BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2898c
Length=128
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842441|ref|NP_337478.1| hypothetical protein MT2966 [Mycoba... 258 2e-67
gi|15610035|ref|NP_217414.1| hypothetical protein Rv2898c [Mycob... 257 4e-67
gi|289553313|ref|ZP_06442523.1| conserved hypothetical protein [... 257 5e-67
gi|308232278|ref|ZP_07415523.2| hypothetical protein TMAG_01099 ... 250 5e-65
gi|308369894|ref|ZP_07419430.2| hypothetical protein TMBG_03042 ... 246 1e-63
gi|240170583|ref|ZP_04749242.1| hypothetical protein MkanA1_1481... 199 8e-50
gi|118463594|ref|YP_882924.1| hypothetical protein MAV_3752 [Myc... 197 5e-49
gi|254776197|ref|ZP_05217713.1| hypothetical protein MaviaA2_162... 194 5e-48
gi|296171471|ref|ZP_06852757.1| possible endonuclease [Mycobacte... 193 8e-48
gi|342858252|ref|ZP_08714907.1| hypothetical protein MCOL_05241 ... 191 4e-47
gi|118617633|ref|YP_905965.1| hypothetical protein MUL_2060 [Myc... 189 1e-46
gi|108798953|ref|YP_639150.1| hypothetical protein Mmcs_1985 [My... 169 1e-40
gi|254821958|ref|ZP_05226959.1| hypothetical protein MintA_18642... 169 1e-40
gi|126434553|ref|YP_001070244.1| hypothetical protein Mjls_1965 ... 167 3e-40
gi|118469536|ref|YP_886847.1| hypothetical protein MSMEG_2508 [M... 167 4e-40
gi|333991259|ref|YP_004523873.1| hypothetical protein JDM601_261... 165 2e-39
gi|145224720|ref|YP_001135398.1| hypothetical protein Mflv_4140 ... 164 4e-39
gi|120403193|ref|YP_953022.1| hypothetical protein Mvan_2202 [My... 156 9e-37
gi|169630295|ref|YP_001703944.1| hypothetical protein MAB_3214c ... 132 1e-29
gi|325673468|ref|ZP_08153159.1| endonuclease [Rhodococcus equi A... 122 2e-26
gi|312139227|ref|YP_004006563.1| hypothetical protein REQ_18100 ... 121 4e-26
gi|336459048|gb|EGO37998.1| hypothetical protein MAPs_07050 [Myc... 119 2e-25
gi|54026114|ref|YP_120356.1| hypothetical protein nfa41430 [Noca... 113 1e-23
gi|257055035|ref|YP_003132867.1| hypothetical protein Svir_09830... 107 6e-22
gi|226305956|ref|YP_002765916.1| hypothetical protein RER_24690 ... 106 1e-21
gi|229491459|ref|ZP_04385283.1| conserved hypothetical protein [... 106 1e-21
gi|340776032|gb|EGR98082.1| TIGR00252 family protein [Propioniba... 105 2e-21
gi|282854574|ref|ZP_06263909.1| conserved hypothetical protein [... 105 3e-21
gi|50842911|ref|YP_056138.1| hypothetical protein PPA1431 [Propi... 103 6e-21
gi|111023510|ref|YP_706482.1| hypothetical protein RHA1_ro06551 ... 103 7e-21
gi|313829533|gb|EFS67247.1| conserved hypothetical protein TIGR0... 103 7e-21
gi|315226784|ref|ZP_07868572.1| endonuclease [Parascardovia dent... 103 8e-21
gi|294787613|ref|ZP_06752866.1| putative endonuclease [Parascard... 103 1e-20
gi|226366012|ref|YP_002783795.1| hypothetical protein ROP_66030 ... 103 1e-20
gi|336117317|ref|YP_004572084.1| hypothetical protein MLP_16670 ... 103 1e-20
gi|314923939|gb|EFS87770.1| conserved hypothetical protein TIGR0... 102 1e-20
gi|289427780|ref|ZP_06429491.1| conserved hypothetical protein T... 102 2e-20
gi|335053622|ref|ZP_08546457.1| TIGR00252 family protein [Propio... 102 2e-20
gi|335277852|gb|AEH29757.1| hypothetical protein TIB1ST10_07350 ... 102 2e-20
gi|284032635|ref|YP_003382566.1| hypothetical protein Kfla_4750 ... 101 4e-20
gi|315106703|gb|EFT78679.1| conserved hypothetical protein TIGR0... 99.8 1e-19
gi|262202032|ref|YP_003273240.1| hypothetical protein Gbro_2095 ... 99.4 1e-19
gi|296268976|ref|YP_003651608.1| hypothetical protein Tbis_0992 ... 98.6 3e-19
gi|260907249|ref|ZP_05915571.1| hypothetical protein BlinB_18076... 98.2 3e-19
gi|2251165|emb|CAB10643.1| hypothetical protein MLCB250.49 [Myco... 98.2 4e-19
gi|284992381|ref|YP_003410935.1| hypothetical protein Gobs_3998 ... 97.8 4e-19
gi|271963372|ref|YP_003337568.1| hypothetical protein Sros_1836 ... 97.8 5e-19
gi|331698496|ref|YP_004334735.1| hypothetical protein Psed_4735 ... 97.8 5e-19
gi|15827845|ref|NP_302108.1| hypothetical protein ML1607 [Mycoba... 97.4 5e-19
gi|309811486|ref|ZP_07705268.1| TIGR00252 family protein [Dermac... 97.4 6e-19
>gi|15842441|ref|NP_337478.1| hypothetical protein MT2966 [Mycobacterium tuberculosis CDC1551]
gi|148824087|ref|YP_001288841.1| hypothetical protein TBFG_12912 [Mycobacterium tuberculosis F11]
gi|167969527|ref|ZP_02551804.1| hypothetical protein MtubH3_16481 [Mycobacterium tuberculosis
H37Ra]
19 more sequence titles
Length=141
Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV
Sbjct 14 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 73
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE
Sbjct 74 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 133
Query 121 LTHLQGIG 128
LTHLQGIG
Sbjct 134 LTHLQGIG 141
>gi|15610035|ref|NP_217414.1| hypothetical protein Rv2898c [Mycobacterium tuberculosis H37Rv]
gi|31794074|ref|NP_856567.1| hypothetical protein Mb2922c [Mycobacterium bovis AF2122/97]
gi|121638779|ref|YP_979003.1| hypothetical protein BCG_2919c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
39 more sequence titles
Length=128
Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV
Sbjct 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE
Sbjct 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
Query 121 LTHLQGIG 128
LTHLQGIG
Sbjct 121 LTHLQGIG 128
>gi|289553313|ref|ZP_06442523.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289437945|gb|EFD20438.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
Length=133
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV
Sbjct 6 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 65
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE
Sbjct 66 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 125
Query 121 LTHLQGIG 128
LTHLQGIG
Sbjct 126 LTHLQGIG 133
>gi|308232278|ref|ZP_07415523.2| hypothetical protein TMAG_01099 [Mycobacterium tuberculosis SUMu001]
gi|308375918|ref|ZP_07445535.2| hypothetical protein TMGG_02432 [Mycobacterium tuberculosis SUMu007]
gi|308214468|gb|EFO73867.1| hypothetical protein TMAG_01099 [Mycobacterium tuberculosis SUMu001]
gi|308344819|gb|EFP33670.1| hypothetical protein TMGG_02432 [Mycobacterium tuberculosis SUMu007]
Length=125
Score = 250 bits (639), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 4 LKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTR 63
+KTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTR
Sbjct 1 MKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTR 60
Query 64 TGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 123
TGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH
Sbjct 61 TGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 120
Query 124 LQGIG 128
LQGIG
Sbjct 121 LQGIG 125
>gi|308369894|ref|ZP_07419430.2| hypothetical protein TMBG_03042 [Mycobacterium tuberculosis SUMu002]
gi|308371170|ref|ZP_07424055.2| hypothetical protein TMCG_02148 [Mycobacterium tuberculosis SUMu003]
gi|308372288|ref|ZP_07428094.2| hypothetical protein TMDG_00090 [Mycobacterium tuberculosis SUMu004]
13 more sequence titles
Length=122
Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Query 7 MTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGD 66
MTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGD
Sbjct 1 MTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGD 60
Query 67 GYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQG 126
GYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQG
Sbjct 61 GYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQG 120
Query 127 IG 128
IG
Sbjct 121 IG 122
>gi|240170583|ref|ZP_04749242.1| hypothetical protein MkanA1_14815 [Mycobacterium kansasii ATCC
12478]
Length=119
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/122 (82%), Positives = 109/122 (90%), Gaps = 3/122 (2%)
Query 7 MTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGD 66
MTR QLGA+GE LAVD+LT +GLRILNRNWRCRYGELDVIACD R+VVFVEVKTRTGD
Sbjct 1 MTRAQLGALGEQLAVDHLTGLGLRILNRNWRCRYGELDVIACDPGARSVVFVEVKTRTGD 60
Query 67 GYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQG 126
GYGGLAHAVTE KVRRLRRLAGLWLA Q++RWAAVRIDVIGVR+G + R PELTHL+G
Sbjct 61 GYGGLAHAVTEPKVRRLRRLAGLWLAGQDQRWAAVRIDVIGVRIGRR---RVPELTHLKG 117
Query 127 IG 128
IG
Sbjct 118 IG 119
>gi|118463594|ref|YP_882924.1| hypothetical protein MAV_3752 [Mycobacterium avium 104]
gi|189040301|sp|A0QJ36.1|Y3752_MYCA1 RecName: Full=UPF0102 protein MAV_3752
gi|118164881|gb|ABK65778.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=128
Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/120 (83%), Positives = 108/120 (90%), Gaps = 3/120 (2%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R+QLGAMGEALAVD+LT MGLR+L+RNWRCRYGELD+IACD AT TVVFVEVKTRTGDGY
Sbjct 12 RIQLGAMGEALAVDHLTRMGLRVLHRNWRCRYGELDIIACDDATSTVVFVEVKTRTGDGY 71
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGIG 128
GGL AVT RKVRRLRRLAGLWLA Q+ RWAA+RIDVIGVRVG + RTPE+THLQGIG
Sbjct 72 GGLPQAVTPRKVRRLRRLAGLWLAGQDRRWAAIRIDVIGVRVGRR---RTPEITHLQGIG 128
>gi|254776197|ref|ZP_05217713.1| hypothetical protein MaviaA2_16213 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=128
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/120 (82%), Positives = 107/120 (90%), Gaps = 3/120 (2%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R+QLGAMGEALAVD+LT MGLR+L+RNWRCRYGELD+IACD AT TVVFVEVKTRTGDGY
Sbjct 12 RIQLGAMGEALAVDHLTRMGLRVLHRNWRCRYGELDIIACDDATSTVVFVEVKTRTGDGY 71
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGIG 128
GGL AVT RKVRRLRRLAGLWLA Q+ WAA+RIDVIGVRVG + RTPE+THLQGIG
Sbjct 72 GGLPQAVTPRKVRRLRRLAGLWLAGQDRGWAAIRIDVIGVRVGRR---RTPEITHLQGIG 128
>gi|296171471|ref|ZP_06852757.1| possible endonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894157|gb|EFG73917.1| possible endonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=128
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/128 (81%), Positives = 110/128 (86%), Gaps = 3/128 (2%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTT TMTR+QLGAMGEALAVD+LT MGLRIL+RNWRCRYGELDVIACD ATRT VFVEV
Sbjct 4 MTTETTMTRLQLGAMGEALAVDHLTRMGLRILHRNWRCRYGELDVIACDEATRTAVFVEV 63
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRTGDGYGGLA+AVTERKVRRLRRLA LWLA Q+ RWAA+RIDVI RTPE
Sbjct 64 KTRTGDGYGGLAYAVTERKVRRLRRLAALWLAGQDTRWAALRIDVI---RVRVGRRRTPE 120
Query 121 LTHLQGIG 128
+THLQGIG
Sbjct 121 ITHLQGIG 128
>gi|342858252|ref|ZP_08714907.1| hypothetical protein MCOL_05241 [Mycobacterium colombiense CECT
3035]
gi|342133956|gb|EGT87136.1| hypothetical protein MCOL_05241 [Mycobacterium colombiense CECT
3035]
Length=125
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/128 (78%), Positives = 110/128 (86%), Gaps = 3/128 (2%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTT TMTR+QLGAMGEALA D+L MG RI+ RNWRCRYGELD+IA D AT TVVFVEV
Sbjct 1 MTTETTMTRIQLGAMGEALAADHLMRMGFRIVARNWRCRYGELDIIARDDATSTVVFVEV 60
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRTGDGYGGLA+AVT RKV RLRRLAGLWLA Q++R AA+RIDVIGVRVG + RTPE
Sbjct 61 KTRTGDGYGGLAYAVTPRKVLRLRRLAGLWLAGQDQRCAAIRIDVIGVRVGRR---RTPE 117
Query 121 LTHLQGIG 128
+THL+GIG
Sbjct 118 ITHLRGIG 125
>gi|118617633|ref|YP_905965.1| hypothetical protein MUL_2060 [Mycobacterium ulcerans Agy99]
gi|183981825|ref|YP_001850116.1| hypothetical protein MMAR_1812 [Mycobacterium marinum M]
gi|189039451|sp|A0PQ75.1|Y2060_MYCUA RecName: Full=UPF0102 protein MUL_2060
gi|238689246|sp|B2HJM5.1|Y1812_MYCMM RecName: Full=UPF0102 protein MMAR_1812
gi|118569743|gb|ABL04494.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175151|gb|ACC40261.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=122
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/125 (76%), Positives = 109/125 (88%), Gaps = 3/125 (2%)
Query 4 LKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTR 63
+KT+TR+QLGA+GE LAV++L+ GL+IL RNWRCRYGELDVIAC+AATRTVVFVEVKTR
Sbjct 1 MKTLTRMQLGALGEQLAVEHLSGQGLQILTRNWRCRYGELDVIACEAATRTVVFVEVKTR 60
Query 64 TGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 123
TGDGYGGLA AVTE KVRRLRRLAGLWLA Q+ WAAVR+DVIGVR+G + PE+TH
Sbjct 61 TGDGYGGLAQAVTEGKVRRLRRLAGLWLAGQDRGWAAVRLDVIGVRIGRSAN---PEITH 117
Query 124 LQGIG 128
L G+G
Sbjct 118 LMGVG 122
>gi|108798953|ref|YP_639150.1| hypothetical protein Mmcs_1985 [Mycobacterium sp. MCS]
gi|119868068|ref|YP_938020.1| hypothetical protein Mkms_2031 [Mycobacterium sp. KMS]
gi|123178986|sp|Q1BAJ0.1|Y1985_MYCSS RecName: Full=UPF0102 protein Mmcs_1985
gi|189039436|sp|A1UEH2.1|Y2031_MYCSK RecName: Full=UPF0102 protein Mkms_2031
gi|108769372|gb|ABG08094.1| protein of unknown function UPF0102 [Mycobacterium sp. MCS]
gi|119694157|gb|ABL91230.1| protein of unknown function UPF0102 [Mycobacterium sp. KMS]
Length=135
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/128 (67%), Positives = 102/128 (80%), Gaps = 3/128 (2%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
+ + T TR +GA+GE LAV +L S+G+R+L RNWRCRYGELDVIA D A R VVFVEV
Sbjct 11 LAPMTTWTRAAIGALGEDLAVKHLDSLGMRVLERNWRCRYGELDVIAEDPAARAVVFVEV 70
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRT D +GG+A AVT +KVRRLRRLAGLWLA ++ERWAAVRIDVIGVR+G + TPE
Sbjct 71 KTRTTDHFGGVAEAVTPQKVRRLRRLAGLWLAGRDERWAAVRIDVIGVRIGRQA---TPE 127
Query 121 LTHLQGIG 128
+THL G+
Sbjct 128 ITHLTGVA 135
>gi|254821958|ref|ZP_05226959.1| hypothetical protein MintA_18642 [Mycobacterium intracellulare
ATCC 13950]
Length=116
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/101 (86%), Positives = 92/101 (92%), Gaps = 1/101 (0%)
Query 10 VQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYG 69
+QLGAMGEALAVD+LT GLRIL+RNWRCRYGELD+IACD A T VFVEVKTRTGDGYG
Sbjct 17 IQLGAMGEALAVDHLTRAGLRILHRNWRCRYGELDIIACDRAG-TAVFVEVKTRTGDGYG 75
Query 70 GLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRV 110
GLAHAVT RKVRRLRRLAGLWLA Q+ RWAA+RIDVIGVRV
Sbjct 76 GLAHAVTPRKVRRLRRLAGLWLAGQDRRWAAIRIDVIGVRV 116
>gi|126434553|ref|YP_001070244.1| hypothetical protein Mjls_1965 [Mycobacterium sp. JLS]
gi|189039418|sp|A3PXX6.1|Y1965_MYCSJ RecName: Full=UPF0102 protein Mjls_1965
gi|126234353|gb|ABN97753.1| protein of unknown function UPF0102 [Mycobacterium sp. JLS]
Length=135
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/128 (66%), Positives = 101/128 (79%), Gaps = 3/128 (2%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
+ + T TR +GA+GE LAV +L S+G+R+L RNWRCRYGELDVIA D A R VVFVEV
Sbjct 11 LAPMTTWTRAAIGALGEDLAVKHLDSLGMRVLERNWRCRYGELDVIAEDPAARAVVFVEV 70
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPE 120
KTRT D +GG+ AVT +KVRRLRRLAGLWLA ++ERWAAVRIDVIGVR+G + TPE
Sbjct 71 KTRTTDHFGGVVQAVTPQKVRRLRRLAGLWLAGRDERWAAVRIDVIGVRIGRQA---TPE 127
Query 121 LTHLQGIG 128
+THL G+
Sbjct 128 ITHLTGVA 135
>gi|118469536|ref|YP_886847.1| hypothetical protein MSMEG_2508 [Mycobacterium smegmatis str.
MC2 155]
gi|189039705|sp|A0QVA9.1|Y2508_MYCS2 RecName: Full=UPF0102 protein MSMEG_2508
gi|118170823|gb|ABK71719.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=124
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/125 (65%), Positives = 102/125 (82%), Gaps = 3/125 (2%)
Query 4 LKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTR 63
+ ++TR +LGA+GE +AV++L ++GL+ L RNWRCRYGELD+IA DAAT TVVFVEVKTR
Sbjct 3 MSSLTRAELGALGEEVAVEHLAALGLKTLARNWRCRYGELDIIAEDAATGTVVFVEVKTR 62
Query 64 TGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 123
+GDG+GGLA AVT +KVRR+RRLA +WLA Q+ WA +RIDVIGVRVG R PE+ H
Sbjct 63 SGDGFGGLAEAVTPQKVRRIRRLAAIWLAAQDAHWAVLRIDVIGVRVG---RSRDPEIVH 119
Query 124 LQGIG 128
L G+G
Sbjct 120 LAGVG 124
>gi|333991259|ref|YP_004523873.1| hypothetical protein JDM601_2619 [Mycobacterium sp. JDM601]
gi|333487227|gb|AEF36619.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=122
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/124 (68%), Positives = 97/124 (79%), Gaps = 3/124 (2%)
Query 4 LKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTR 63
+ TMTR +LGA+GE LAVD+L G IL RNWRCRYGELDVIA D A VVFVEVKTR
Sbjct 1 MTTMTRAELGALGEQLAVDHLLGQGWTILARNWRCRYGELDVIADDPAAGAVVFVEVKTR 60
Query 64 TGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 123
TGDG+GGLA+AV KVRR+RRLAGLWLA Q+ W VR+DVIGVR+G RTPE+TH
Sbjct 61 TGDGFGGLAYAVPPEKVRRVRRLAGLWLAGQQSHWVEVRVDVIGVRIG---RCRTPEITH 117
Query 124 LQGI 127
L+G+
Sbjct 118 LRGV 121
>gi|145224720|ref|YP_001135398.1| hypothetical protein Mflv_4140 [Mycobacterium gilvum PYR-GCK]
gi|315445050|ref|YP_004077929.1| hypothetical protein Mspyr1_34830 [Mycobacterium sp. Spyr1]
gi|189040278|sp|A4TEA7.1|Y4140_MYCGI RecName: Full=UPF0102 protein Mflv_4140
gi|145217206|gb|ABP46610.1| protein of unknown function UPF0102 [Mycobacterium gilvum PYR-GCK]
gi|315263353|gb|ADU00095.1| conserved hypothetical protein TIGR00252 [Mycobacterium sp. Spyr1]
Length=123
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/124 (65%), Positives = 100/124 (81%), Gaps = 3/124 (2%)
Query 5 KTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRT 64
+T TR +GA+GE LAVDYL +GLR+L RNWRCRYGELDV+ D A + VVFVEVKTRT
Sbjct 3 RTDTRAGVGALGEQLAVDYLQGLGLRVLARNWRCRYGELDVVVADDAVQAVVFVEVKTRT 62
Query 65 GDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHL 124
D +GG+A AVT KVRRLRRLAGLWL++Q+ RW +VR+DV+ VR+G GR+PELTH+
Sbjct 63 TDRFGGVAEAVTPVKVRRLRRLAGLWLSEQDARWESVRLDVVTVRIG---QGRSPELTHI 119
Query 125 QGIG 128
+G+G
Sbjct 120 EGVG 123
>gi|120403193|ref|YP_953022.1| hypothetical protein Mvan_2202 [Mycobacterium vanbaalenii PYR-1]
gi|189039777|sp|A1T766.1|Y2202_MYCVP RecName: Full=UPF0102 protein Mvan_2202
gi|119956011|gb|ABM13016.1| protein of unknown function UPF0102 [Mycobacterium vanbaalenii
PYR-1]
Length=121
Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/122 (65%), Positives = 96/122 (79%), Gaps = 5/122 (4%)
Query 6 TMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTG 65
T +R ++GA+GE LAVDYL +GLR+L RNWRCRYGELDVIA D R VVF+EVKTRT
Sbjct 4 TESRAEIGALGEQLAVDYLQGLGLRVLARNWRCRYGELDVIAADG--RAVVFIEVKTRTT 61
Query 66 DGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQ 125
D +GG+A AVT KVRRLRRLAG+WLA Q WAAVRIDV+ VR+G + R PE+TH++
Sbjct 62 DRFGGVAQAVTPTKVRRLRRLAGVWLAQQPGHWAAVRIDVVTVRIGRR---RVPEVTHIK 118
Query 126 GI 127
G+
Sbjct 119 GV 120
>gi|169630295|ref|YP_001703944.1| hypothetical protein MAB_3214c [Mycobacterium abscessus ATCC
19977]
gi|169242262|emb|CAM63290.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=120
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/124 (56%), Positives = 88/124 (71%), Gaps = 6/124 (4%)
Query 5 KTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRT 64
+++R Q+G GE LA DYL G +L+RNWRCR+GELD++A +VFVEVKTRT
Sbjct 3 HSLSRSQIGIHGEDLAADYLRQHGFTVLDRNWRCRHGELDIVA--VCGDLLVFVEVKTRT 60
Query 65 GDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHL 124
G +G A AVT K+RRLRRLAG+WLA Q W++VRIDVI VR+ +G TPELTH+
Sbjct 61 GQRFGTPAEAVTYAKLRRLRRLAGIWLAAQGGSWSSVRIDVIEVRL----AGATPELTHI 116
Query 125 QGIG 128
G+G
Sbjct 117 HGVG 120
>gi|325673468|ref|ZP_08153159.1| endonuclease [Rhodococcus equi ATCC 33707]
gi|325555489|gb|EGD25160.1| endonuclease [Rhodococcus equi ATCC 33707]
Length=118
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/118 (56%), Positives = 80/118 (68%), Gaps = 5/118 (4%)
Query 10 VQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYG 69
+ LGAMGE LA LT+ G+RIL+RNWRCR+GELD+IA D T+VFVEVKTR+G G+G
Sbjct 5 LALGAMGEELAASALTAAGMRILDRNWRCRHGELDLIAVDG--DTIVFVEVKTRSGLGFG 62
Query 70 GLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
A AVT K RR+R LA WLAD + W VR DV+ V V + R P +THL +
Sbjct 63 SPAEAVTYAKQRRIRMLAQRWLADSDRHWPHVRFDVVAVLV---DRRREPAVTHLPAV 117
>gi|312139227|ref|YP_004006563.1| hypothetical protein REQ_18100 [Rhodococcus equi 103S]
gi|311888566|emb|CBH47878.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=118
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/118 (55%), Positives = 80/118 (68%), Gaps = 5/118 (4%)
Query 10 VQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYG 69
+ LGAMGE LA LT+ G+RIL+RNWRCR+GELD++A D T+VFVEVKTR+G G+G
Sbjct 5 LALGAMGEELAASALTAAGMRILDRNWRCRHGELDLVAVDG--DTIVFVEVKTRSGLGFG 62
Query 70 GLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
A AVT K RR+R LA WLAD + W VR DV+ V V + R P +THL +
Sbjct 63 SPAEAVTYAKQRRIRMLAQRWLADSDRHWPHVRFDVVAVLV---DRRREPAVTHLPAV 117
>gi|336459048|gb|EGO37998.1| hypothetical protein MAPs_07050 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=77
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/78 (81%), Positives = 67/78 (86%), Gaps = 3/78 (3%)
Query 51 ATRTVVFVEVKTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRV 110
AT TVVFVEVKTRTGDGYGGL AVT RKVRRLRRLAGLWLA Q+ WAA+RIDVIGVRV
Sbjct 3 ATSTVVFVEVKTRTGDGYGGLPQAVTPRKVRRLRRLAGLWLAGQDRGWAAIRIDVIGVRV 62
Query 111 GPKNSGRTPELTHLQGIG 128
G + RTPE+THLQGIG
Sbjct 63 GRR---RTPEITHLQGIG 77
>gi|54026114|ref|YP_120356.1| hypothetical protein nfa41430 [Nocardia farcinica IFM 10152]
gi|81373731|sp|Q5YS49.1|Y4143_NOCFA RecName: Full=UPF0102 protein NFA_41430
gi|54017622|dbj|BAD58992.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=127
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/116 (53%), Positives = 77/116 (67%), Gaps = 5/116 (4%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LGA GE LA +L G+ I+ RNWRCRYGELD+IA DA +T FVEVKTR G G+G
Sbjct 16 LGAHGEELAARFLRDAGMEIVARNWRCRYGELDLIARDA--QTTAFVEVKTRRGLGFGTP 73
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
A AVT K +R+RRLA LWLA+Q+ W +R DV+ V + P G P + HL+ +
Sbjct 74 AEAVTFTKRQRIRRLALLWLAEQDGPWQQIRFDVVSVLMTP---GHRPVIDHLKAV 126
>gi|257055035|ref|YP_003132867.1| hypothetical protein Svir_09830 [Saccharomonospora viridis DSM
43017]
gi|256584907|gb|ACU96040.1| conserved hypothetical protein TIGR00252 [Saccharomonospora viridis
DSM 43017]
Length=125
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 74/122 (61%), Gaps = 5/122 (4%)
Query 5 KTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRT 64
K +RV LG GE LAV++L GL IL RNWRCR GELD++A D RT+V EVKTR+
Sbjct 7 KGESRVALGRRGEDLAVEHLRRQGLVILERNWRCREGELDILATDG--RTLVVCEVKTRS 64
Query 65 GDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHL 124
G GYG AVT+ K R+RRL WLA + W +R DVI + PK P L H+
Sbjct 65 GRGYGIPTEAVTQDKRNRIRRLTLRWLASRRVAWCPLRFDVIAIECSPKEP---PRLRHV 121
Query 125 QG 126
G
Sbjct 122 VG 123
>gi|226305956|ref|YP_002765916.1| hypothetical protein RER_24690 [Rhodococcus erythropolis PR4]
gi|226185073|dbj|BAH33177.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=123
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/113 (51%), Positives = 70/113 (62%), Gaps = 5/113 (4%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LGA GE +AV++L GL I+ RNWRCRYGELDV+A +VFVEVKTR+G GYG
Sbjct 12 LGARGEDVAVEFLVDAGLEIVERNWRCRYGELDVVATSG--DRIVFVEVKTRSGVGYGSP 69
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHL 124
A +VT K RR+R LA WL D W+ VR DV+ V +G P + H
Sbjct 70 AESVTFAKQRRIRVLAMQWLTDSGRSWSRVRFDVVAVLIGRDG---VPSVEHF 119
>gi|229491459|ref|ZP_04385283.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321744|gb|EEN87541.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=123
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/113 (51%), Positives = 71/113 (63%), Gaps = 5/113 (4%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LGA GE +AV++L GL I+ RNWRCRYGELDV+A + +VFVEVKTR+G GYG
Sbjct 12 LGARGEDVAVEFLIDAGLEIVERNWRCRYGELDVVAT--SGDRIVFVEVKTRSGVGYGSP 69
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHL 124
A +VT K RR+R LA WL D W+ VR DV+ V +G P + H
Sbjct 70 AESVTFAKQRRIRVLAMQWLTDSGRSWSRVRFDVVAVLIGRDG---VPSVEHF 119
>gi|340776032|gb|EGR98082.1| TIGR00252 family protein [Propionibacterium acnes SK182B-JCVI]
Length=139
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/119 (48%), Positives = 76/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R GA GE LA +YL S+G I+ RNW C GE+D++A + +TVVF+EVK R+G G+
Sbjct 25 RPAFGAWGEDLAAEYLESLGWTIIARNWACDVGEIDLVAREG--QTVVFIEVKARSGTGF 82
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL Q+E +VRID IGV V P G P +TH++GI
Sbjct 83 GDPLESITTAKVRKLHELALTWLVSQDEGAHSVRIDAIGVMVRP---GTKPSITHVRGI 138
>gi|282854574|ref|ZP_06263909.1| conserved hypothetical protein [Propionibacterium acnes J139]
gi|282582156|gb|EFB87538.1| conserved hypothetical protein [Propionibacterium acnes J139]
gi|314981834|gb|EFT25927.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL110PA3]
gi|315090699|gb|EFT62675.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL110PA4]
Length=140
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/119 (49%), Positives = 76/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R GA GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+G G+
Sbjct 26 RPAFGAWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSGTGF 83
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q+E +VRID IGV V P G P +TH++GI
Sbjct 84 GDPLESITTAKVRKLHELALAWLVNQDEGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 139
>gi|50842911|ref|YP_056138.1| hypothetical protein PPA1431 [Propionibacterium acnes KPA171202]
gi|289426447|ref|ZP_06428190.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
SK187]
gi|335051496|ref|ZP_08544415.1| TIGR00252 family protein [Propionibacterium sp. 409-HC1]
29 more sequence titles
Length=140
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/119 (48%), Positives = 76/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R GA GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+G G+
Sbjct 26 RPAFGAWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSGTGF 83
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q++ +VRID IGV V P G P +TH++GI
Sbjct 84 GDPLESITTAKVRKLHELALAWLVNQDDGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 139
>gi|111023510|ref|YP_706482.1| hypothetical protein RHA1_ro06551 [Rhodococcus jostii RHA1]
gi|122955109|sp|Q0S2B2.1|Y6551_RHOSR RecName: Full=UPF0102 protein RHA1_ro06551
gi|110823040|gb|ABG98324.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=118
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (65%), Gaps = 5/114 (4%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LGA GE LA YLT G+ I++RNWR RYGE+D+IA + +VFVEVKTR G GYG
Sbjct 7 LGAHGEDLAARYLTEAGMEIVDRNWRSRYGEVDLIAAEGDW--LVFVEVKTRRGLGYGSP 64
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQ 125
A AVT K RR+R LA WL D W+ VR DV+ + +G G P++ H++
Sbjct 65 AEAVTFSKQRRIRLLAVEWLRDSGRHWSRVRFDVVAIMIG---HGPQPQIEHVR 115
>gi|313829533|gb|EFS67247.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL063PA2]
gi|315108927|gb|EFT80903.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL030PA2]
Length=140
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/119 (48%), Positives = 76/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R GA GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+G G+
Sbjct 26 RPAFGAWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSGTGF 83
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q++ +VRID IGV V P G P +TH++GI
Sbjct 84 GDPLESITTAKVRKLHELALAWLVNQDDGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 139
>gi|315226784|ref|ZP_07868572.1| endonuclease [Parascardovia denticolens DSM 10105]
gi|315120916|gb|EFT84048.1| endonuclease [Parascardovia denticolens DSM 10105]
Length=150
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/130 (44%), Positives = 77/130 (60%), Gaps = 4/130 (3%)
Query 2 TTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFV--- 58
T L +T ++G +GE +A DYL S+G RIL+RNW CRYGELD++A + F+
Sbjct 21 TRLNDLTGKEVGRIGEDIAADYLGSLGYRILDRNWNCRYGELDIVALSPPFHSKQFIVVA 80
Query 59 EVKTRTGDGYGGLAHAVTERKVRRLRRLAGLWL-ADQEERWAAVRIDVIGVRVGPKNSGR 117
EVKTR D G AVT+RK+ LRR A LWL A +RIDVIG+ + G
Sbjct 81 EVKTRRTDICGSPLEAVTDRKLAHLRRAAFLWLDAHPHFPHHPMRIDVIGISLHEDEHGY 140
Query 118 TPELTHLQGI 127
P ++H++ +
Sbjct 141 APIISHVKEV 150
>gi|294787613|ref|ZP_06752866.1| putative endonuclease [Parascardovia denticolens F0305]
gi|294484969|gb|EFG32604.1| putative endonuclease [Parascardovia denticolens F0305]
Length=132
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/130 (44%), Positives = 77/130 (60%), Gaps = 4/130 (3%)
Query 2 TTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFV--- 58
T L +T ++G +GE +A DYL S+G RIL+RNW CRYGELD++A + F+
Sbjct 3 TRLNDLTGKEVGRIGEDIAADYLGSLGYRILDRNWNCRYGELDIVALSPPFHSKQFIVVA 62
Query 59 EVKTRTGDGYGGLAHAVTERKVRRLRRLAGLWL-ADQEERWAAVRIDVIGVRVGPKNSGR 117
EVKTR D G AVT+RK+ LRR A LWL A +RIDVIG+ + G
Sbjct 63 EVKTRRTDICGSPLEAVTDRKLAHLRRAAFLWLDAHPHFPHHPMRIDVIGISLHEDEHGY 122
Query 118 TPELTHLQGI 127
P ++H++ +
Sbjct 123 APIISHVKEV 132
>gi|226366012|ref|YP_002783795.1| hypothetical protein ROP_66030 [Rhodococcus opacus B4]
gi|254806564|sp|C1B2T3.1|Y6603_RHOOB RecName: Full=UPF0102 protein ROP_66030
gi|226244502|dbj|BAH54850.1| hypothetical protein [Rhodococcus opacus B4]
Length=118
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/114 (50%), Positives = 73/114 (65%), Gaps = 5/114 (4%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LGA GE LA YLT G+ I++RNWR RYGE+D+IA + +VFVEVKTR G GYG
Sbjct 7 LGAHGEDLAARYLTEAGMEIIDRNWRSRYGEVDLIAAEGDW--LVFVEVKTRRGLGYGTP 64
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQ 125
A AVT K RR+R LA WL + W+ VR DV+ + +G G P++ H++
Sbjct 65 AEAVTFSKQRRIRLLAVEWLRESSRHWSRVRFDVVAIMIG---HGPQPQIEHVR 115
>gi|336117317|ref|YP_004572084.1| hypothetical protein MLP_16670 [Microlunatus phosphovorus NM-1]
gi|334685096|dbj|BAK34681.1| hypothetical protein MLP_16670 [Microlunatus phosphovorus NM-1]
Length=125
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 76/124 (62%), Gaps = 6/124 (4%)
Query 8 TRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAA--TRTVVFVEVKTRTG 65
TR ++GA GE LA L S G+ IL+RNW CR+GELDV+A D + RT VF EVK RTG
Sbjct 4 TRNEIGATGETLAALELQSQGMEILDRNWSCRWGELDVVALDPSGGRRTAVFCEVKCRTG 63
Query 66 DGYGGLAHAVTERKVRRLRRLAGLWLADQEE-RWAAVRIDVIGVRVGPKNSGRTPELTHL 124
GYG ++T KV RLR+LA WL+ VR+D IGV + R P LTH+
Sbjct 64 RGYGDPLESLTYAKVSRLRKLAAEWLSQHPGLALDGVRLDAIGVLL---ERDRQPVLTHV 120
Query 125 QGIG 128
GIG
Sbjct 121 VGIG 124
>gi|314923939|gb|EFS87770.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL001PA1]
gi|314966116|gb|EFT10215.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL082PA2]
gi|315094911|gb|EFT66887.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL060PA1]
gi|315104183|gb|EFT76159.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL050PA2]
gi|327328007|gb|EGE69776.1| putative endonuclease [Propionibacterium acnes HL103PA1]
Length=140
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/119 (48%), Positives = 75/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R GA GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+ G+
Sbjct 26 RPAFGAWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSDTGF 83
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q+E +VRID IGV V P G P +TH++GI
Sbjct 84 GDPLESITTAKVRKLHELALAWLVNQDEGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 139
>gi|289427780|ref|ZP_06429491.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
J165]
gi|295130968|ref|YP_003581631.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
SK137]
gi|289159044|gb|EFD07237.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
J165]
32 more sequence titles
Length=140
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/119 (48%), Positives = 75/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R GA GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R G G+
Sbjct 26 RPAFGAWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARLGTGF 83
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q++ +VRID IGV V P G P +TH++GI
Sbjct 84 GDPLESITTAKVRKLHELALAWLVNQDDGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 139
>gi|335053622|ref|ZP_08546457.1| TIGR00252 family protein [Propionibacterium sp. 434-HC2]
gi|333766697|gb|EGL43984.1| TIGR00252 family protein [Propionibacterium sp. 434-HC2]
Length=140
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/119 (48%), Positives = 75/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R G GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+G G+
Sbjct 26 RPAFGVWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSGTGF 83
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q++ +VRID IGV V P G P +TH++GI
Sbjct 84 GDPLESITTAKVRKLHELALAWLVNQDDGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 139
>gi|335277852|gb|AEH29757.1| hypothetical protein TIB1ST10_07350 [Propionibacterium acnes
6609]
Length=139
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/119 (48%), Positives = 75/119 (64%), Gaps = 5/119 (4%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R G GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+G G+
Sbjct 25 RPAFGVWGEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSGTGF 82
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
G ++T KVR+L LA WL +Q++ +VRID IGV V P G P +TH++GI
Sbjct 83 GDPLESITTAKVRKLHELALAWLVNQDDGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 138
>gi|284032635|ref|YP_003382566.1| hypothetical protein Kfla_4750 [Kribbella flavida DSM 17836]
gi|283811928|gb|ADB33767.1| protein of unknown function UPF0102 [Kribbella flavida DSM 17836]
Length=118
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/121 (47%), Positives = 73/121 (61%), Gaps = 5/121 (4%)
Query 8 TRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDG 67
T+ +G GE LA ++LT G IL RNWRC GE+D++A + R +V EVKTR G
Sbjct 3 TKDAVGQYGEQLAAEHLTQAGFAILARNWRCELGEIDIVAREG--RALVVCEVKTRRGLN 60
Query 68 YGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
YG ++T RK+ LRRL G WL + E R VRIDV+ V V P G P + HL+G+
Sbjct 61 YGSPLESITYRKLSTLRRLVGRWLQEHEVRPPEVRIDVVSVLVPP---GGAPTVEHLRGV 117
Query 128 G 128
G
Sbjct 118 G 118
>gi|315106703|gb|EFT78679.1| conserved hypothetical protein TIGR00252 [Propionibacterium acnes
HL030PA1]
Length=110
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/112 (49%), Positives = 73/112 (66%), Gaps = 5/112 (4%)
Query 16 GEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGLAHAV 75
GE LA Y+ S+G I+ RNW C GE+D+IA D +TVVF+EVK R+G G+G ++
Sbjct 3 GEDLAAQYVESLGWTIIARNWTCDVGEIDLIARD--DQTVVFIEVKARSGTGFGDPLESI 60
Query 76 TERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTHLQGI 127
T KVR+L LA WL +Q++ +VRID IGV V P G P +TH++GI
Sbjct 61 TTAKVRKLHELALAWLVNQDDGVHSVRIDAIGVMVRP---GAEPTVTHVRGI 109
>gi|262202032|ref|YP_003273240.1| hypothetical protein Gbro_2095 [Gordonia bronchialis DSM 43247]
gi|262085379|gb|ACY21347.1| protein of unknown function UPF0102 [Gordonia bronchialis DSM
43247]
Length=137
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/107 (45%), Positives = 70/107 (66%), Gaps = 2/107 (1%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R +G +GE +A +++T+ G R+L+RNWR RYGELD+IA D R +V VEVKTR Y
Sbjct 17 RRHIGHLGEDIAAEFVTNRGWRVLHRNWRNRYGELDLIAADG--RVLVVVEVKTRASLMY 74
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNS 115
AVT K+ R+R+L +WL++Q W+ +R DVI V++ P +
Sbjct 75 SDPLEAVTPAKLSRMRKLTRMWLSEQNGSWSQIRFDVISVQLDPHHP 121
>gi|296268976|ref|YP_003651608.1| hypothetical protein Tbis_0992 [Thermobispora bispora DSM 43833]
gi|296091763|gb|ADG87715.1| protein of unknown function UPF0102 [Thermobispora bispora DSM
43833]
Length=117
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/98 (56%), Positives = 70/98 (72%), Gaps = 2/98 (2%)
Query 11 QLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGG 70
+LG GE +A +YL + G+RIL RNWRCR GE+D++A D +T +V VEVKTR+G +G
Sbjct 6 RLGRDGERVAEEYLRAEGMRILARNWRCREGEIDILAQDGST--LVVVEVKTRSGRSHGT 63
Query 71 LAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGV 108
AVT K+RRLR LA WLA Q ER+ AVRIDV+ +
Sbjct 64 AFEAVTPAKLRRLRMLAARWLAAQGERFDAVRIDVVAL 101
>gi|260907249|ref|ZP_05915571.1| hypothetical protein BlinB_18076 [Brevibacterium linens BL2]
Length=132
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/112 (44%), Positives = 73/112 (66%), Gaps = 7/112 (6%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LG GE LA D+L G+ I+ RN+RC GE+D+IA D T +VFVEVKTR G
Sbjct 20 LGQTGEDLAADFLQRQGMVIIERNFRCPRGEIDIIAKDGDT--IVFVEVKTRRTLAQGSP 77
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 123
AVT K+R++R L+G+WL+ Q++ +A++RID +G+ + P+ P+ +H
Sbjct 78 LEAVTAAKLRKIRTLSGIWLSQQKDFFASIRIDALGIVMDPE-----PDYSH 124
>gi|2251165|emb|CAB10643.1| hypothetical protein MLCB250.49 [Mycobacterium leprae]
Length=117
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/96 (59%), Positives = 65/96 (68%), Gaps = 1/96 (1%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTT K MTRVQL AMGE AVD LT MGLR L+ NWRCRYGE DVIA + A RTVV +
Sbjct 22 MTTHKAMTRVQLEAMGEVFAVDNLTRMGLRGLHCNWRCRYGECDVIASETAHRTVV-SRL 80
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEE 96
++ G + E+KVR LR LAGLW A+Q+E
Sbjct 81 RSIAATVMEGSRRSAPEQKVRWLRWLAGLWPANQDE 116
>gi|284992381|ref|YP_003410935.1| hypothetical protein Gobs_3998 [Geodermatophilus obscurus DSM
43160]
gi|284065626|gb|ADB76564.1| protein of unknown function UPF0102 [Geodermatophilus obscurus
DSM 43160]
Length=139
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 73/125 (59%), Gaps = 5/125 (4%)
Query 2 TTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVK 61
T + T LGA GE +A YLT GLR+L+RNWRCR GELD++A D +VF EVK
Sbjct 17 TVGRVRTTSDLGAHGERIAAAYLTDSGLRVLDRNWRCRDGELDIVARDGD--ALVFCEVK 74
Query 62 TRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPEL 121
TR G+G AV K RRLR LA WLA +ER +R DV+GV V R +
Sbjct 75 TRRAVGFGHPVEAVGHVKQRRLRVLAQRWLAAHDERAPELRFDVVGVLV---RVDRPALV 131
Query 122 THLQG 126
THL+
Sbjct 132 THLRA 136
>gi|271963372|ref|YP_003337568.1| hypothetical protein Sros_1836 [Streptosporangium roseum DSM
43021]
gi|270506547|gb|ACZ84825.1| conserved hypothetical protein [Streptosporangium roseum DSM
43021]
Length=117
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/98 (55%), Positives = 71/98 (73%), Gaps = 2/98 (2%)
Query 11 QLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGG 70
+LG GE +AVDYL + G++IL+RNWRC GE+DV+A + R +V VEVKTR+G +G
Sbjct 6 ELGRHGEQVAVDYLLAHGMQILDRNWRCPDGEIDVVAREG--RALVVVEVKTRSGRTHGT 63
Query 71 LAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGV 108
AVT K+ RLRRL G WLA++ ER+ +VRIDVI +
Sbjct 64 AFEAVTVVKLARLRRLTGRWLAERRERFDSVRIDVIAL 101
>gi|331698496|ref|YP_004334735.1| hypothetical protein Psed_4735 [Pseudonocardia dioxanivorans
CB1190]
gi|326953185|gb|AEA26882.1| UPF0102 protein yraN [Pseudonocardia dioxanivorans CB1190]
Length=118
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/112 (48%), Positives = 70/112 (63%), Gaps = 5/112 (4%)
Query 12 LGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGYGGL 71
LG GE +A +YL GL +L+RNWRCR GELD+IA +A +V EVKTR+G +G
Sbjct 7 LGRRGEDVAAEYLEKQGLVVLDRNWRCREGELDIIATGSAG--LVVCEVKTRSGTAFGEP 64
Query 72 AHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRVGPKNSGRTPELTH 123
A AVT+RK+ R+RR+ WLA W AVR DV+ + + P GR + H
Sbjct 65 AEAVTDRKIARIRRVTQAWLAAHGLPWCAVRFDVLAIVIEP---GRPATIQH 113
>gi|15827845|ref|NP_302108.1| hypothetical protein ML1607 [Mycobacterium leprae TN]
gi|221230322|ref|YP_002503738.1| hypothetical protein MLBr_01607 [Mycobacterium leprae Br4923]
gi|6919997|sp|O33024.2|Y1607_MYCLE RecName: Full=UPF0102 protein ML1607
gi|13093397|emb|CAC30558.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933429|emb|CAR71702.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=96
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/96 (59%), Positives = 65/96 (68%), Gaps = 1/96 (1%)
Query 1 MTTLKTMTRVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEV 60
MTT K MTRVQL AMGE AVD LT MGLR L+ NWRCRYGE DVIA + A RTVV +
Sbjct 1 MTTHKAMTRVQLEAMGEVFAVDNLTRMGLRGLHCNWRCRYGECDVIASETAHRTVV-SRL 59
Query 61 KTRTGDGYGGLAHAVTERKVRRLRRLAGLWLADQEE 96
++ G + E+KVR LR LAGLW A+Q+E
Sbjct 60 RSIAATVMEGSRRSAPEQKVRWLRWLAGLWPANQDE 95
>gi|309811486|ref|ZP_07705268.1| TIGR00252 family protein [Dermacoccus sp. Ellin185]
gi|308434537|gb|EFP58387.1| TIGR00252 family protein [Dermacoccus sp. Ellin185]
Length=165
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/102 (56%), Positives = 64/102 (63%), Gaps = 2/102 (1%)
Query 9 RVQLGAMGEALAVDYLTSMGLRILNRNWRCRYGELDVIACDAATRTVVFVEVKTRTGDGY 68
R LGA GE A YL S+G IL NWRC GE+DV+A D R +V VEVKTR +
Sbjct 51 RRTLGAQGERHACAYLASLGYEILETNWRCSEGEIDVVARDG--REIVVVEVKTRRSQRF 108
Query 69 GGLAHAVTERKVRRLRRLAGLWLADQEERWAAVRIDVIGVRV 110
G AVT K RLRRLA LWL ++E AAVRIDVIGV V
Sbjct 109 GPAVEAVTHEKHLRLRRLACLWLREREVSAAAVRIDVIGVDV 150
Lambda K H
0.323 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128801298864
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40