BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2902c
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tub... 529 2e-148
gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (R... 527 8e-148
gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bov... 526 9e-148
gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium ... 394 9e-108
gi|342858247|ref|ZP_08714902.1| ribonuclease HII [Mycobacterium ... 384 1e-104
gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium ... 384 1e-104
gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avi... 372 2e-101
gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ul... 371 5e-101
gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium ... 371 7e-101
gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [... 371 7e-101
gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium ... 369 4e-100
gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium lep... 368 6e-100
gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp... 358 5e-97
gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium... 358 6e-97
gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium va... 355 3e-96
gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium av... 354 7e-96
gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium... 350 1e-94
gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium sm... 347 1e-93
gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium... 324 8e-87
gi|333991264|ref|YP_004523878.1| ribonuclease HII protein RnhB [... 318 5e-85
gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jost... 301 5e-80
gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus o... 298 5e-79
gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococ... 296 2e-78
gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus e... 293 1e-77
gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus er... 291 8e-77
gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofe... 285 5e-75
gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinic... 285 6e-75
gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus eq... 273 2e-71
gi|343925306|ref|ZP_08764831.1| ribonuclease HII [Gordonia alkan... 268 4e-70
gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella pa... 268 6e-70
gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronch... 264 9e-69
gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacteri... 248 5e-64
gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacteriu... 246 3e-63
gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus ro... 239 4e-61
gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus r... 238 5e-61
gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium e... 238 5e-61
gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia ... 236 2e-60
gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia... 235 6e-60
gi|334697156|gb|AEG81953.1| Ribonuclease HII [Corynebacterium ul... 234 1e-59
gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium g... 234 1e-59
gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellu... 232 5e-59
gi|337291043|ref|YP_004630064.1| ribonuclease HII [Corynebacteri... 231 9e-59
gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacteriu... 231 9e-59
gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacteriu... 230 1e-58
gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacteriu... 230 2e-58
gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacteriu... 229 3e-58
gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium ps... 228 6e-58
gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacteri... 228 7e-58
gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium d... 228 8e-58
gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora vi... 227 2e-57
>gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tuberculosis H37Rv]
gi|15842445|ref|NP_337482.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551]
gi|121638783|ref|YP_979007.1| ribonuclease HII [Mycobacterium bovis BCG str. Pasteur 1173P2]
80 more sequence titles
Length=264
Score = 529 bits (1362), Expect = 2e-148, Method: Compositional matrix adjust.
Identities = 264/264 (100%), Positives = 264/264 (100%), Gaps = 0/264 (0%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV
Sbjct 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP
Sbjct 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ
Sbjct 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
Query 241 TGEGRWSKSSHPATMRATGRAQGT 264
TGEGRWSKSSHPATMRATGRAQGT
Sbjct 241 TGEGRWSKSSHPATMRATGRAQGT 264
>gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis
C]
gi|124602053|gb|EAY61063.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis
C]
Length=264
Score = 527 bits (1357), Expect = 8e-148, Method: Compositional matrix adjust.
Identities = 263/264 (99%), Positives = 263/264 (99%), Gaps = 0/264 (0%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
RIASLAALDDSKKLSEQAREKLF LICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV
Sbjct 61 RIASLAALDDSKKLSEQAREKLFSLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP
Sbjct 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ
Sbjct 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
Query 241 TGEGRWSKSSHPATMRATGRAQGT 264
TGEGRWSKSSHPATMRATGRAQGT
Sbjct 241 TGEGRWSKSSHPATMRATGRAQGT 264
>gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bovis AF2122/97]
gi|39932282|sp|Q7TXM7.1|RNH2_MYCBO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|31619673|emb|CAD96613.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium
bovis AF2122/97]
Length=264
Score = 526 bits (1356), Expect = 9e-148, Method: Compositional matrix adjust.
Identities = 263/264 (99%), Positives = 263/264 (99%), Gaps = 0/264 (0%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDR GVHVANIEGMRRAV
Sbjct 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRHGVHVANIEGMRRAV 120
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP
Sbjct 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ
Sbjct 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
Query 241 TGEGRWSKSSHPATMRATGRAQGT 264
TGEGRWSKSSHPATMRATGRAQGT
Sbjct 241 TGEGRWSKSSHPATMRATGRAQGT 264
>gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium kansasii ATCC 12478]
Length=239
Score = 394 bits (1011), Expect = 9e-108, Method: Compositional matrix adjust.
Identities = 210/245 (86%), Positives = 222/245 (91%), Gaps = 6/245 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M KTWPPRTVIRKSGGLR TLESALHR GLGPVAGVDEVGRGACAGPLVVAACVLGP
Sbjct 1 MNKTWPPRTVIRKSGGLR---TLESALHRSGLGPVAGVDEVGRGACAGPLVVAACVLGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL+E+AREKLFPLICRYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLAALDDSKKLTEKAREKLFPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDR+MVA+DA +P
Sbjct 118 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDAQYP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
GYGFAEHKGYSTPAH+ ALARLGPCP+HRYSFINVRRVA GS+ VA+ P P A+
Sbjct 178 GYGFAEHKGYSTPAHTLALARLGPCPEHRYSFINVRRVADGSDVRVVAECDPGP---PAE 234
Query 241 TGEGR 245
GE R
Sbjct 235 RGEVR 239
>gi|342858247|ref|ZP_08714902.1| ribonuclease HII [Mycobacterium colombiense CECT 3035]
gi|342133951|gb|EGT87131.1| ribonuclease HII [Mycobacterium colombiense CECT 3035]
Length=239
Score = 384 bits (985), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 206/240 (86%), Positives = 217/240 (91%), Gaps = 6/240 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MATTWPPRTVIRKSSGLR---TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPG 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL+E AREKLFPLI RYA+AYHVVFIP AEVDRRGVHVANIEGMRRAV
Sbjct 58 RMESLAALDDSKKLTEAAREKLFPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGL +PSLPVIGGDA AACIAAASVLAKVSRDR+MVA++ADHP
Sbjct 118 AGLSVRPGYVLSDGFRVPGLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDP---RDG 237
GYGFA HKGYSTPAHS ALARLGPCP+HRYSFINVRRVA+GS VAD QPDP RDG
Sbjct 178 GYGFALHKGYSTPAHSTALARLGPCPEHRYSFINVRRVANGSGERVVADCQPDPPMERDG 237
>gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium intracellulare ATCC 13950]
Length=239
Score = 384 bits (985), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 206/240 (86%), Positives = 217/240 (91%), Gaps = 6/240 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MATTWPPRTVIRKSSGLR---TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPG 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL+E AREKLFPLI RYA+AYHVVFIP AEVDRRGVHVANIEGMRRAV
Sbjct 58 RMESLAALDDSKKLTEAAREKLFPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGL +PSLPVIGGDA AACIAAASVLAKVSRDR+MVA++ADHP
Sbjct 118 AGLSVRPGYVLSDGFRVPGLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDP---RDG 237
GYGFA HKGYSTPAHS ALARLGPCP+HRYSFINVRRVA+GS T VAD PDP RDG
Sbjct 178 GYGFALHKGYSTPAHSTALARLGPCPEHRYSFINVRRVANGSGTRLVADCDPDPPLQRDG 237
>gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|81413495|sp|Q73VP3.1|RNH2_MYCPA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|41397427|gb|AAS05287.1| RnhB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459039|gb|EGO37989.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis
S397]
Length=239
Score = 372 bits (956), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 196/233 (85%), Positives = 213/233 (92%), Gaps = 3/233 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MATTWPPRTVIRKSSGLR---TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPG 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
++ SLAALDDSKKL+E RE+LFP+I RYA+AYHVVFIP AEVDRRGVHVANIEGMRRAV
Sbjct 58 KLESLAALDDSKKLTESVRERLFPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL++RPGYVLSDGFRVPGL +PSLPVIGGDA AACIAAASVLAKVSRDR+MVA+DA+HP
Sbjct 118 AGLSLRPGYVLSDGFRVPGLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPD 233
GYGFA+HKGYSTPAHS ALARLGPCPQHR+SFINVRRVA+GS VAD +PD
Sbjct 178 GYGFADHKGYSTPAHSAALARLGPCPQHRHSFINVRRVANGSGGRVVADCKPD 230
>gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ulcerans Agy99]
gi|166226630|sp|A0PQ70.1|RNH2_MYCUA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118569738|gb|ABL04489.1| ribonuclease HII protein RnhB [Mycobacterium ulcerans Agy99]
Length=239
Score = 371 bits (953), Expect = 5e-101, Method: Compositional matrix adjust.
Identities = 197/241 (82%), Positives = 211/241 (88%), Gaps = 6/241 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPPRTVIRKS GLR TLESAL R GLGPVAGVDEVGRGACAGPLVVAAC LGP
Sbjct 1 MATTWPPRTVIRKSSGLR---TLESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R SLAALDDSKKL+E+ REKLFPLICRYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RYESLAALDDSKKLTEKTREKLFPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGL +PSLPVIGGDAAAACIAAASVLAKVSRDR+MVA+D +P
Sbjct 118 AGLSVRPGYVLSDGFRVPGLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDP---RDG 237
GYGFAEHKGYST AH+ AL +LGPCP+HR SFINVRRVA+ SN A A+ + DP RDG
Sbjct 178 GYGFAEHKGYSTRAHTLALTQLGPCPEHRRSFINVRRVATRSNGAATAEREADPPQERDG 237
Query 238 T 238
T
Sbjct 238 T 238
>gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium avium subsp. avium ATCC 25291]
Length=239
Score = 371 bits (952), Expect = 7e-101, Method: Compositional matrix adjust.
Identities = 195/233 (84%), Positives = 212/233 (91%), Gaps = 3/233 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGP
Sbjct 1 MATTWPPRTVIRKSSGLR---TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPA 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
++ SLAALDDSKKL+E RE+LFP+I RYA+AYHVVFIP AEVDRRGVHVANIEGMRRAV
Sbjct 58 KLESLAALDDSKKLTESVRERLFPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL++RPGYVLSDGFRVPGL +PSLPVIGGDA AACIAAASVLAKVSRDR+MVA+DA+HP
Sbjct 118 AGLSLRPGYVLSDGFRVPGLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPD 233
GYGFA+HKGYSTPAHS ALARLGPCPQHR+SFINVRRVA+GS VAD +PD
Sbjct 178 GYGFADHKGYSTPAHSAALARLGPCPQHRHSFINVRRVANGSGGRVVADCKPD 230
>gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [Mycobacterium marinum M]
gi|238689245|sp|B2HJL9.1|RNH2_MYCMM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|183175145|gb|ACC40255.1| ribonuclease HII protein RnhB [Mycobacterium marinum M]
Length=239
Score = 371 bits (952), Expect = 7e-101, Method: Compositional matrix adjust.
Identities = 197/241 (82%), Positives = 211/241 (88%), Gaps = 6/241 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPPRTVIRKS GLR TLESAL R GLGPVAGVDEVGRGACAGPLVVAAC LGP
Sbjct 1 MATTWPPRTVIRKSSGLR---TLESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R SLAALDDSKKL+E+ REKLFPLICRYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RYESLAALDDSKKLTEKTREKLFPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGL +PSLPVIGGDAAAACIAAASVLAKVSRDR+MVA+D +P
Sbjct 118 AGLSVRPGYVLSDGFRVPGLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDP---RDG 237
GYGFAEHKGYST AH+ AL +LGPCP+HR SFINVRRVA+ SN A A+ + DP RDG
Sbjct 178 GYGFAEHKGYSTRAHTLALTQLGPCPEHRRSFINVRRVATRSNGAAAAEREADPPQERDG 237
Query 238 T 238
T
Sbjct 238 T 238
>gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894152|gb|EFG73912.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=242
Score = 369 bits (946), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 199/237 (84%), Positives = 213/237 (90%), Gaps = 6/237 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M WPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MRGPWPPRTVIRKSAGLR---TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPG 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL+E AREKLFPLI RYA+AYHVVFIP AEVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLAALDDSKKLTEGAREKLFPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL++RPGYVLSDGFRVPGLP+PSLPVIGGDA AACIAAASVLAKVSRDR+MVA+DADHP
Sbjct 118 AGLSLRPGYVLSDGFRVPGLPVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDADHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTA---EVADGQPDP 234
GYGFAEHKGYSTPAHS AL +LGPCP+HR SFINVRRVA GS + VA+ +PDP
Sbjct 178 GYGFAEHKGYSTPAHSTALTQLGPCPEHRRSFINVRRVALGSTGSGGRVVAECRPDP 234
>gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium leprae TN]
gi|221230324|ref|YP_002503740.1| ribonuclease HII [Mycobacterium leprae Br4923]
gi|7227915|sp|O33022.1|RNH2_MYCLE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|254807982|sp|B8ZRW3.1|RNH2_MYCLB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2251163|emb|CAB10634.1| ribonuclease HII [Mycobacterium leprae]
gi|13093399|emb|CAC30562.1| ribonuclease HII [Mycobacterium leprae]
gi|219933431|emb|CAR71706.1| ribonuclease HII [Mycobacterium leprae Br4923]
Length=240
Score = 368 bits (944), Expect = 6e-100, Method: Compositional matrix adjust.
Identities = 188/245 (77%), Positives = 204/245 (84%), Gaps = 5/245 (2%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M TWPP +IRKSGGLRGM TLE L R GLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MATTWPPCRIIRKSGGLRGMWTLEYELQRSGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ +LDDSKKLS + RE LFPLICRYA+AYHVVFIPS EVDR GV VANIEGMRRAV
Sbjct 61 RLEE--SLDDSKKLSAKGREMLFPLICRYALAYHVVFIPSVEVDRHGVQVANIEGMRRAV 118
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGL +PSLPV+GGDA ACIAAASVLAKVSRDR+MVA+DAD+P
Sbjct 119 AGLSVRPGYVLSDGFRVPGLSVPSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYP 178
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQ 240
GYGFA HKGY T AHS AL +LGPCP+HRYSFINVRR+ + SNT VA P P A+
Sbjct 179 GYGFAAHKGYCTRAHSLALTQLGPCPEHRYSFINVRRIVTRSNTRAVAGFTPAP---PAE 235
Query 241 TGEGR 245
GE R
Sbjct 236 HGECR 240
>gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp. MCS]
gi|119868055|ref|YP_938007.1| ribonuclease HII [Mycobacterium sp. KMS]
gi|123070330|sp|Q1BAK3.1|RNH2_MYCSS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|166226628|sp|A1UEF9.1|RNH2_MYCSK RecName: Full=Ribonuclease HII; Short=RNase HII
gi|108769359|gb|ABG08081.1| RNase HII [Mycobacterium sp. MCS]
gi|119694144|gb|ABL91217.1| RNase HII [Mycobacterium sp. KMS]
Length=239
Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 189/237 (80%), Positives = 210/237 (89%), Gaps = 4/237 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M +WPPRTVIRK+ GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGP
Sbjct 1 MPASWPPRTVIRKASGLR---TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL E+ RE+LFP+I RYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLAALDDSKKLGEKERERLFPVIRRYALAYHVVFIPSEEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGLPMPSLPV+GGDAAAACIAAASVLAKVSRDR+MVA++ +HP
Sbjct 118 AGLSVRPGYVLSDGFRVPGLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDG 237
GYGFAEHKGYSTPAH+ ALA LGPC QHRYSFINVRR+ + + T +++ G D G
Sbjct 178 GYGFAEHKGYSTPAHTAALAELGPCAQHRYSFINVRRLVT-AGTPQISGGLTDAEPG 233
>gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium sp. JLS]
gi|166226627|sp|A3PXW3.1|RNH2_MYCSJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|126234340|gb|ABN97740.1| RNase HII [Mycobacterium sp. JLS]
Length=239
Score = 358 bits (918), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 189/237 (80%), Positives = 210/237 (89%), Gaps = 4/237 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M +WPPRTVIRK+ GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGP
Sbjct 1 MPASWPPRTVIRKASGLR---TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL E+ RE+LFP+I RYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLAALDDSKKLGEKERERLFPVIRRYALAYHVVFIPSGEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGLPMPSLPV+GGDAAAACIAAASVLAKVSRDR+MVA++ +HP
Sbjct 118 AGLSVRPGYVLSDGFRVPGLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDG 237
GYGFAEHKGYSTPAH+ ALA LGPC QHRYSFINVRR+ + + T +++ G D G
Sbjct 178 GYGFAEHKGYSTPAHTAALAELGPCAQHRYSFINVRRLVT-AGTPQISGGLTDAEPG 233
>gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium vanbaalenii PYR-1]
gi|166226631|sp|A1T759.1|RNH2_MYCVP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119956004|gb|ABM13009.1| RNase HII [Mycobacterium vanbaalenii PYR-1]
Length=249
Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 190/233 (82%), Positives = 205/233 (88%), Gaps = 11/233 (4%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M WPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGP
Sbjct 1 MPAAWPPRTVIRKSSGLR---TLESALYRAGLGPVAGVDEVGRGACAGPLVVAACVLGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL+E RE+LFPLI RYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLAALDDSKKLNENERERLFPLIRRYALAYHVVFIPSQEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL++RPGYVLSDGFRVPGLPMPSLPV+GGDAAAACIAAASVLAKVSRDR+MVA++ +HP
Sbjct 118 AGLSLRPGYVLSDGFRVPGLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEDEHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPD 233
GYGFAEHKGYST AHS ALARLGP QHRYSFINVRR+ V DG+P+
Sbjct 178 GYGFAEHKGYSTRAHSAALARLGPSSQHRYSFINVRRL--------VMDGEPE 222
>gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium avium 104]
gi|189043629|sp|A0QJ41.1|RNH2_MYCA1 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118167315|gb|ABK68212.1| ribonuclease HII [Mycobacterium avium 104]
Length=230
Score = 354 bits (909), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 192/236 (82%), Positives = 210/236 (89%), Gaps = 6/236 (2%)
Query 10 VIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALD 69
+IRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGPG++ SLAALD
Sbjct 1 MIRKSSGLR---TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALD 57
Query 70 DSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGY 129
DSKKL+E RE+LFP+I RYA+AYHVVFIP AEVDRRGVHVANIEGMRRAVAGL++RPGY
Sbjct 58 DSKKLTESVRERLFPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGY 117
Query 130 VLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKG 189
VLSDGFRVPGL +PSLPVIGGDA AACIAAASVLAKVSRDR+MVA+DA+HPGYGFA+HKG
Sbjct 118 VLSDGFRVPGLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKG 177
Query 190 YSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQPDPRDGTAQTGEGR 245
YSTPAHS ALARLGPCPQHR+SFINVRRVA+GS VAD +PD Q EGR
Sbjct 178 YSTPAHSAALARLGPCPQHRHSFINVRRVANGSGGRVVADCKPDL---PLQRDEGR 230
>gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium gilvum PYR-GCK]
gi|315445077|ref|YP_004077956.1| RNase HII [Mycobacterium sp. Spyr1]
gi|189043630|sp|A4TE84.1|RNH2_MYCGI RecName: Full=Ribonuclease HII; Short=RNase HII
gi|145217233|gb|ABP46637.1| RNase HII [Mycobacterium gilvum PYR-GCK]
gi|315263380|gb|ADU00122.1| RNase HII [Mycobacterium sp. Spyr1]
Length=253
Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 187/232 (81%), Positives = 202/232 (88%), Gaps = 11/232 (4%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M WPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAAC+LGP
Sbjct 1 MPAVWPPRTVIRKSSGLR---TLESALYRAGLGPVAGVDEVGRGACAGPLVVAACILGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SL+ALDDSKKL+E RE+LFPLI RYAVA+HVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLSALDDSKKLNESERERLFPLIRRYAVAFHVVFIPSVEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGLAVRPGYVLSDGFRVPGLPMPSLPV+GGDAAAACIAAASVLAKVSRDR+MVA+D +HP
Sbjct 118 AGLAVRPGYVLSDGFRVPGLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMDQEHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQP 232
GYGFA+HKGYST AHS AL LGP QHR+SFINVRR+ V DG+P
Sbjct 178 GYGFADHKGYSTRAHSAALNDLGPSTQHRFSFINVRRL--------VVDGEP 221
>gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155]
gi|166226626|sp|A0QV44.1|RNH2_MYCS2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118172942|gb|ABK73838.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155]
Length=272
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 182/229 (80%), Positives = 199/229 (87%), Gaps = 3/229 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M +WPPRTVIRKS GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGP
Sbjct 1 MPGSWPPRTVIRKSSGLR---TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R+ SLAALDDSKKL E+ RE+LFPLI RYA+AYHVVFIPS EVDRRGVHVANIEGMRRAV
Sbjct 58 RLESLAALDDSKKLGEKERERLFPLIRRYALAYHVVFIPSHEVDRRGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL+VRPGYVLSDGFRVPGL +PSLPVIGGDAAAACIAAASVLAKVSRDR+MV ++ HP
Sbjct 118 AGLSVRPGYVLSDGFRVPGLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVEMEEQHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVAD 229
GYGFAEHKGY TPAH+ AL R GPC +HRYS++NVRR A + +D
Sbjct 178 GYGFAEHKGYITPAHTAALTRHGPCVEHRYSYVNVRRAAEATGVRWASD 226
>gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium abscessus ATCC 19977]
gi|238688907|sp|B1MDH9.1|RNH2_MYCA9 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|169242270|emb|CAM63298.1| Ribonuclease HII (RNase HII) [Mycobacterium abscessus]
Length=234
Score = 324 bits (831), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 171/223 (77%), Positives = 190/223 (86%), Gaps = 3/223 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M+ +WPPRTVIRK+ GLR TLE L R GLGPVAGVDE GRGACAGPLV+AACVLG
Sbjct 1 MSTSWPPRTVIRKASGLR---TLELTLDRVGLGPVAGVDEAGRGACAGPLVIAACVLGSN 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
+ SLAAL+DSKKL+E+ RE LFPLICRYA AYHVV +P+ EVDR GVHVANIEGMRRAV
Sbjct 58 QRKSLAALNDSKKLTEKMRETLFPLICRYAEAYHVVSVPADEVDRIGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGL V+PGYVL+DGFRVPGLP+PSLPVIGGDA+AACIAAASVLAKVSRDRVMV +D+DHP
Sbjct 118 AGLGVKPGYVLTDGFRVPGLPVPSLPVIGGDASAACIAAASVLAKVSRDRVMVNMDSDHP 177
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSN 223
GYGFA HKGYST H+ AL RLGP QHR SF+NVR A GS+
Sbjct 178 GYGFAVHKGYSTAVHTEALRRLGPSAQHRQSFVNVRNAAMGSS 220
>gi|333991264|ref|YP_004523878.1| ribonuclease HII protein RnhB [Mycobacterium sp. JDM601]
gi|333487232|gb|AEF36624.1| ribonuclease HII protein RnhB [Mycobacterium sp. JDM601]
Length=234
Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 185/234 (80%), Positives = 199/234 (86%), Gaps = 13/234 (5%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M WPPRTVIR+S GLR TLESAL+R GLGPVAGVDEVGRGACAGPLVVAACVLGPG
Sbjct 1 MAPAWPPRTVIRRSPGLR---TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPG 57
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
R A+LAALDDSK+L+ ARE+LFPLI R+A+AYHVVFIP A+VD RGVHVANIEGMRRAV
Sbjct 58 RPAALAALDDSKRLTANAREQLFPLIRRHALAYHVVFIPPADVDARGVHVANIEGMRRAV 117
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
AGLA+RPGYVLSDGFRVPGLPMPSLPVIGGD AAACIAAASVLAKVSRDR M L D P
Sbjct 118 AGLALRPGYVLSDGFRVPGLPMPSLPVIGGDGAAACIAAASVLAKVSRDRYMATL--DDP 175
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVAS--------GSNTAE 226
GYGFA+HKGYST AH+ ALA LGPC QHRYSFINVR VA+ G+N AE
Sbjct 176 GYGFADHKGYSTAAHTAALAALGPCGQHRYSFINVRNVAALAAATGTMGTNRAE 229
>gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jostii RHA1]
gi|122955111|sp|Q0S2B9.1|RNH2_RHOSR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110823033|gb|ABG98317.1| ribonuclease H [Rhodococcus jostii RHA1]
Length=226
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 166/226 (74%), Positives = 184/226 (82%), Gaps = 7/226 (3%)
Query 4 TWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA 63
+WPPR VIR+S GLR T+ESAL R GLGPVAGVDE GRGACAGPLVVAACVL P
Sbjct 3 SWPPRIVIRRSSGLR---TMESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYP 59
Query 64 SLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGL 123
+LA LDDSKKL+E+ RE+LFP I R AVA+ VV P+ EVDR GVHVANIEGMRRAVAGL
Sbjct 60 ALARLDDSKKLTERTREELFPAITRLAVAWSVVSFPAEEVDRMGVHVANIEGMRRAVAGL 119
Query 124 AVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYG 183
+ PGYVL+DGFRVPGLP PSLPVIGGDAAAACIAAASVLAKVSRDRVMVA+D HPGYG
Sbjct 120 STTPGYVLTDGFRVPGLPAPSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYG 179
Query 184 FAEHKGYSTPAHSRALARLGPCPQHRYSFINV----RRVASGSNTA 225
FA HKGY+TPAH AL +LGPCP+HR S+ NV RV + S +A
Sbjct 180 FAIHKGYNTPAHLTALEKLGPCPEHRRSWSNVAALIHRVDNSSGSA 225
>gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus opacus B4]
gi|254807984|sp|C1B2S6.1|RNH2_RHOOB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|226244495|dbj|BAH54843.1| ribonuclease HII [Rhodococcus opacus B4]
Length=226
Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/226 (74%), Positives = 182/226 (81%), Gaps = 7/226 (3%)
Query 4 TWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA 63
+WPPR VIR+S GLR T+ESAL R GLGPVAGVDE GRGACAGPLVVAACVL P
Sbjct 3 SWPPRIVIRRSSGLR---TMESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYP 59
Query 64 SLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGL 123
+LA LDDSKKL+E+ RE+LFP I R AVA+ VV P+ EVDR GVHVANIEGMRRAVAGL
Sbjct 60 ALARLDDSKKLTERTREELFPAITRLAVAWSVVSFPADEVDRMGVHVANIEGMRRAVAGL 119
Query 124 AVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYG 183
PGYVL+DGFRVPGLP PSLPVIGGDAAAACIAAASVLAKVSRDRVMVA+D HPGYG
Sbjct 120 TTTPGYVLTDGFRVPGLPAPSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYG 179
Query 184 FAEHKGYSTPAHSRALARLGPCPQHRYSFINV----RRVASGSNTA 225
FA HKGY+TPAH AL LGPCP+HR S+ NV RV + S +A
Sbjct 180 FAIHKGYNTPAHLAALEVLGPCPEHRRSWSNVAALLHRVDNSSGSA 225
>gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococcus equi 103S]
gi|311888563|emb|CBH47875.1| ribonuclease HII RnhB [Rhodococcus equi 103S]
Length=230
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/228 (73%), Positives = 187/228 (83%), Gaps = 6/228 (2%)
Query 4 TWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA 63
TWPPRTVIR++ GLR T+ESAL R GLGPVAGVDE GRGACAGPLVVAACVLG A
Sbjct 3 TWPPRTVIRRASGLR---TMESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHA 59
Query 64 SLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGL 123
+LA LDDSKKL+E+ R++LFP+I R A+A+ VV IP+AEVDR GVHVANIEGMRRAVAGL
Sbjct 60 ALARLDDSKKLTEKVRDELFPVIKRLALAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGL 119
Query 124 AVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYG 183
V PGYVL+DGFRVPGLP PSLPVIGGDA+AACIAAASVLAKVSRDR MVALD + PGYG
Sbjct 120 TVAPGYVLTDGFRVPGLPAPSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYG 179
Query 184 FAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASGSNTAEVADGQ 231
FA HKGYST H+ AL LGPC +HR S+ N VA+ S E A+G+
Sbjct 180 FAGHKGYSTAVHTAALNELGPCREHRMSYAN---VAAASRAFESAEGR 224
>gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus erythropolis PR4]
gi|259494071|sp|C0ZXT2.1|RNH2_RHOE4 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|226185063|dbj|BAH33167.1| putative ribonuclease HII [Rhodococcus erythropolis PR4]
Length=226
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/218 (73%), Positives = 180/218 (83%), Gaps = 5/218 (2%)
Query 4 TWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA 63
+WPPR VIR+S GLR T+ESAL R GLGPVAGVDE GRGACAGPLV+AACVL P A
Sbjct 3 SWPPRVVIRRSAGLR---TMESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQA 59
Query 64 SLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGL 123
+LA LDDSKKL+E+ARE+LFP I R A+A+ VV +P+AEVD+ G+HVANIEGMRRAVAGL
Sbjct 60 ALARLDDSKKLTERAREELFPAIKRLALAWSVVSVPAAEVDQIGIHVANIEGMRRAVAGL 119
Query 124 AVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYG 183
+ PGYVL+DGFRVPGL PSLPVIGGD AAACIAAASVLAKV+RDRVM +D HPGYG
Sbjct 120 DLEPGYVLTDGFRVPGLTAPSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDETHPGYG 179
Query 184 FAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASG 221
FA HKGYSTP H AL LGPCP+HR ++ NV VA+G
Sbjct 180 FAIHKGYSTPLHMDALDELGPCPEHRMTYANV--VAAG 215
>gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus erythropolis SK121]
gi|229321683|gb|EEN87480.1| ribonuclease HII [Rhodococcus erythropolis SK121]
Length=226
Score = 291 bits (744), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 156/218 (72%), Positives = 179/218 (83%), Gaps = 5/218 (2%)
Query 4 TWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA 63
+WPPR VIR+S GLR T+ESAL R GLGPVAGVDE GRGACAGPLV+AACVL P A
Sbjct 3 SWPPRVVIRRSAGLR---TMESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQA 59
Query 64 SLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGL 123
+LA LDDSKKL+E+ARE+LFP I R A+A+ V+ +P+AEVD+ G+HVANIEGMRRAVA L
Sbjct 60 ALARLDDSKKLTERAREELFPAIKRLALAWSVISVPAAEVDQIGIHVANIEGMRRAVASL 119
Query 124 AVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYG 183
+ PGYVL+DGFRVPGL PSLPVIGGD AAACIAAASVLAKV+RDRVM +D HPGYG
Sbjct 120 DLEPGYVLTDGFRVPGLTAPSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDDTHPGYG 179
Query 184 FAEHKGYSTPAHSRALARLGPCPQHRYSFINVRRVASG 221
FA HKGYSTP H AL LGPCP+HR ++ NV VA+G
Sbjct 180 FAIHKGYSTPLHMDALDELGPCPEHRMTYANV--VAAG 215
>gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395]
gi|326198469|gb|EGD55653.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395]
Length=219
Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 157/218 (73%), Positives = 179/218 (83%), Gaps = 5/218 (2%)
Query 1 MTKT--WPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLG 58
MT+T WPPR+ +RK+ GLR TLE L R GLGPVAGVDE GRGACAGPLVVAACVLG
Sbjct 1 MTRTTRWPPRSPVRKAAGLR---TLEFTLARQGLGPVAGVDEAGRGACAGPLVVAACVLG 57
Query 59 PGRIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRR 118
++ SLA+LDDSKKLSE RE+L+ + R+AV+++VV IP+AEVDR GVHVANIEGMRR
Sbjct 58 AAQLKSLASLDDSKKLSEATRERLYTAVVRHAVSWNVVAIPAAEVDRLGVHVANIEGMRR 117
Query 119 AVAGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDAD 178
AVAGL+VRPGYVLSDGF+VPGLP PSLPVIGGDA AACIAAASVLAKV+RDR+MVALDA+
Sbjct 118 AVAGLSVRPGYVLSDGFQVPGLPAPSLPVIGGDANAACIAAASVLAKVTRDRMMVALDAE 177
Query 179 HPGYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVR 216
PGY FA HKGYST H L GP +HR S+ NVR
Sbjct 178 LPGYEFAVHKGYSTALHMACLDARGPSVEHRMSYRNVR 215
>gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152]
gi|81373729|sp|Q5YS47.1|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152]
Length=251
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 155/212 (74%), Positives = 177/212 (84%), Gaps = 3/212 (1%)
Query 5 WPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIAS 64
WPPR V+RK+GGLR TLE+AL RGGLGPVAGVDE GRG CAGPLVVAAC+L P
Sbjct 7 WPPRMVMRKAGGLR---TLEAALIRGGLGPVAGVDEAGRGPCAGPLVVAACLLAPKAYDR 63
Query 65 LAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLA 124
LA LDDSKKL+E ARE+L+P+I R A+A+ VV IP+ E+D G+HVANIEGMRRAVAGL
Sbjct 64 LAGLDDSKKLTEAAREELYPVITRLALAWEVVVIPAWEIDAIGIHVANIEGMRRAVAGLR 123
Query 125 VRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGF 184
RPGYVL+DGFRVPGL PSLPVIGGDAAAACIAAAS+LAKV+RDR+MV LD+ HPGYGF
Sbjct 124 QRPGYVLTDGFRVPGLAAPSLPVIGGDAAAACIAAASILAKVTRDRIMVELDSRHPGYGF 183
Query 185 AEHKGYSTPAHSRALARLGPCPQHRYSFINVR 216
A HKGY+TP H+ AL RLGPC +HR S+ NVR
Sbjct 184 AAHKGYNTPEHTAALQRLGPCSEHRRSWRNVR 215
>gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus equi ATCC 33707]
gi|325555491|gb|EGD25162.1| ribonuclease HII [Rhodococcus equi ATCC 33707]
Length=212
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/209 (74%), Positives = 172/209 (83%), Gaps = 3/209 (1%)
Query 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82
+ESAL R GLGPVAGVDE GRGACAGPLVVAACVLG A+LA LDDSKKL+E+ R++L
Sbjct 1 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 60
Query 83 FPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPGLPM 142
FP+I R AVA+ VV IP+AEVDR GVHVANIEGMRRAVAGL V PGYVL+DGFRVPGLP
Sbjct 61 FPVIKRLAVAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVPGLPA 120
Query 143 PSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALARL 202
PSLPVIGGDA+AACIAAASVLAKVSRDR MVALD + PGYGFA HKGYST H+ AL L
Sbjct 121 PSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNEL 180
Query 203 GPCPQHRYSFINVRRVASGSNTAEVADGQ 231
GPC +HR S+ N VA+ S E A+G+
Sbjct 181 GPCREHRMSYAN---VAAASRAFESAEGR 206
>gi|343925306|ref|ZP_08764831.1| ribonuclease HII [Gordonia alkanivorans NBRC 16433]
gi|343764745|dbj|GAA11757.1| ribonuclease HII [Gordonia alkanivorans NBRC 16433]
Length=234
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/220 (68%), Positives = 172/220 (79%), Gaps = 4/220 (1%)
Query 5 WPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIAS 64
WPPR+ +R++ GLR T E ALHR GLGPVAGVDE GRGACAGPLVVAACVL P ++AS
Sbjct 10 WPPRSPVRRAAGLR---TFEFALHRQGLGPVAGVDEAGRGACAGPLVVAACVLKPTQLAS 66
Query 65 LAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLA 124
LA LDDSK+L+E+ RE L+ + RYA A+ V I +AE+DR G+HVANIEGMRRAVA L
Sbjct 67 LADLDDSKRLTEKTRETLYQSVTRYAHAWSAVIIDAAEIDRIGIHVANIEGMRRAVAALD 126
Query 125 VRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGF 184
V PGYVLSDGF VPGL PSLPVIGGD AAACIAAAS++AKV+RDR+MVA+DAD PGY F
Sbjct 127 VTPGYVLSDGFVVPGLTAPSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDADLPGYDF 186
Query 185 AEHKGYSTPAHSRALARLGPCPQHRYSFINV-RRVASGSN 223
A HKGYST H + GP PQHR S+ NV RV S +N
Sbjct 187 AIHKGYSTALHMSRIDAAGPSPQHRMSYRNVAARVVSSAN 226
>gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella paurometabola DSM 20162]
gi|296027483|gb|ADG78253.1| Ribonuclease H [Tsukamurella paurometabola DSM 20162]
Length=228
Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 154/229 (68%), Positives = 174/229 (76%), Gaps = 8/229 (3%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
M WPPR V+R S GL T+ES L R GLGPVAG+DE GRGACAGP+ VAAC+L P
Sbjct 1 MRDRWPPRPVVRSSSGLS---TMESVLGRAGLGPVAGIDEAGRGACAGPMTVAACIL-PR 56
Query 61 RI-ASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRA 119
+I SLA LDDSKKLSE ARE+L+P I ++AV++ VV IP+AEVDR GVHVANI GMRRA
Sbjct 57 KIPPSLARLDDSKKLSEIARERLYPEILKHAVSWSVVTIPAAEVDRLGVHVANISGMRRA 116
Query 120 VAGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADH 179
+A L V PGYVL DGF VPGL +PSLPVIGGDA+A+CIAAASVLAKV+RDRVM LDAD+
Sbjct 117 IATLQVTPGYVLIDGFTVPGLGIPSLPVIGGDASASCIAAASVLAKVTRDRVMAELDADY 176
Query 180 PGYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINVR---RVASGSNTA 225
GYGFA HKGYST AH AL LGP QHR + NVR R S TA
Sbjct 177 DGYGFAVHKGYSTAAHMAALGELGPSDQHRMRYQNVRAALRATSNEGTA 225
>gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronchialis DSM 43247]
gi|262085376|gb|ACY21344.1| Ribonuclease H [Gordonia bronchialis DSM 43247]
Length=228
Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/215 (67%), Positives = 168/215 (79%), Gaps = 4/215 (1%)
Query 1 MTKTWPPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPG 60
MT+ WPPR IR++ LR T E ALHR GLGPVAGVDE GRGACAGPLVVAACVL P
Sbjct 1 MTR-WPPRAPIRRAASLR---TFEFALHRNGLGPVAGVDEAGRGACAGPLVVAACVLKPT 56
Query 61 RIASLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAV 120
++ SLA LDDSK+L+E+ RE L+ + RYA ++ V I +AE+DR G+HVANIEGMRRAV
Sbjct 57 QLTSLADLDDSKRLTERTRETLYRAVTRYAHSWSAVIIDAAEIDRIGIHVANIEGMRRAV 116
Query 121 AGLAVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHP 180
A L V PGYVLSDGF+VPGL PSLPVIGGD AAACIAAAS++AKV+RDR+MVA+D +HP
Sbjct 117 AALDVTPGYVLSDGFKVPGLTAPSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDDEHP 176
Query 181 GYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINV 215
GY FA HKGYST H + GP PQHR S+ NV
Sbjct 177 GYDFAVHKGYSTAHHMSRIDTAGPSPQHRMSYRNV 211
>gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231]
gi|302331000|gb|ADL21194.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 1002]
gi|341825128|gb|AEK92649.1| Ribonuclease HII [Corynebacterium pseudotuberculosis PAT10]
Length=240
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/211 (58%), Positives = 156/211 (74%), Gaps = 3/211 (1%)
Query 6 PPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASL 65
P R IRK L+ +RT E L + GLGPVAG+DE GRG+C GP+ +AAC+L IA+L
Sbjct 17 PQRVKIRK---LKHLRTFEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAAL 73
Query 66 AALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAV 125
A L DSKKLS + RE+L+PLI +YAVA+ ++ I ++E+DR G+ ANI GMRRA+A L+
Sbjct 74 ATLTDSKKLSSRMREELYPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSK 133
Query 126 RPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFA 185
+PGYVL D RVPGL PSLP+IGGD AA CIAAASVLAK SRD +M+ LD ++PGYG
Sbjct 134 QPGYVLIDAMRVPGLTCPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLG 193
Query 186 EHKGYSTPAHSRALARLGPCPQHRYSFINVR 216
+HKGY T +H A+ R G P+HRYS+ NV+
Sbjct 194 DHKGYGTKSHIDAVRRHGGTPEHRYSYANVK 224
>gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867]
gi|227543214|ref|ZP_03973263.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866]
gi|227091505|gb|EEI26817.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181023|gb|EEI61995.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866]
Length=208
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/198 (63%), Positives = 145/198 (74%), Gaps = 0/198 (0%)
Query 20 MRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAR 79
MRT E AL + GLGPVAGVDE GRGACAGP+ +AAC+L I L LDDSKKL+ R
Sbjct 1 MRTHEVALAKAGLGPVAGVDEAGRGACAGPITIAACILPDQFIPELELLDDSKKLTPARR 60
Query 80 EKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPG 139
LFPLI R+A+A+H+V I + ++D RG+ ANI GMRRAV GLAVRPGYVL+D + VPG
Sbjct 61 AHLFPLIKRHAIAWHIVHISAHDIDERGITDANISGMRRAVGGLAVRPGYVLTDAWWVPG 120
Query 140 LPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRAL 199
PSLPVIGGDA A CIAAASVLAK SRD++M+ DA +PGYGFA HKGY T H A+
Sbjct 121 FAQPSLPVIGGDATARCIAAASVLAKYSRDQIMIDYDAQYPGYGFAGHKGYGTAKHMDAV 180
Query 200 ARLGPCPQHRYSFINVRR 217
G P HRYS+ NVR
Sbjct 181 RHHGASPIHRYSYSNVRN 198
>gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus rotundus DSM 44985]
gi|296181515|gb|ADG98421.1| Ribonuclease H [Segniliparus rotundus DSM 44985]
Length=221
Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/198 (63%), Positives = 143/198 (73%), Gaps = 0/198 (0%)
Query 18 RGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQ 77
+G+ E+AL R G VAGVDE GRGACAGPLVVA+CVL P +L LDDSK+L+ Q
Sbjct 19 KGLHAFEAALRRAGYTSVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQ 78
Query 78 AREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRV 137
RE L P I ++ +HVV +P AEVD GVH AN+EGMRRAVAGLA P YVL DGF V
Sbjct 79 KREWLEPRIREQSLGWHVVVMPPAEVDAMGVHQANLEGMRRAVAGLAQPPDYVLMDGFDV 138
Query 138 PGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSR 197
PG+P P+ V+GGD ACIAAASVLAKV+RDR+MVALD GYGFA HKGY T AH
Sbjct 139 PGMPSPAQRVVGGDRLVACIAAASVLAKVARDRIMVALDQSRSGYGFAAHKGYCTAAHMS 198
Query 198 ALARLGPCPQHRYSFINV 215
ALA+ GPC HRYS+ V
Sbjct 199 ALAQFGPCEHHRYSYAPV 216
>gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974]
gi|316253260|gb|EFV12660.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974]
Length=215
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/196 (65%), Positives = 140/196 (72%), Gaps = 0/196 (0%)
Query 20 MRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAR 79
M ES L R GL VAGVDE GRGACAGPLVVA+CVL P +L LDDSK+L+ Q R
Sbjct 1 MHAFESVLRRAGLAAVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKR 60
Query 80 EKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPG 139
E L P I + A ++HVV +P EVD GVH AN+EGMRRAVAGLA P YVL DGF VP
Sbjct 61 EWLEPRIFQQAASWHVVVMPPGEVDAMGVHQANLEGMRRAVAGLAEVPDYVLLDGFEVPR 120
Query 140 LPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRAL 199
L P+ V+GGD ACIAAASVLAKV+RDR+M LD HPGYGFA HKGY T AH AL
Sbjct 121 LGAPARRVVGGDRLVACIAAASVLAKVARDRIMAELDEAHPGYGFATHKGYCTAAHMAAL 180
Query 200 ARLGPCPQHRYSFINV 215
A LGPC QHRYS+ V
Sbjct 181 AELGPCDQHRYSYAPV 196
>gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium efficiens YS-314]
gi|259507538|ref|ZP_05750438.1| ribonuclease HII [Corynebacterium efficiens YS-314]
gi|39932418|sp|Q8FP63.1|RNH2_COREF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|23493766|dbj|BAC18735.1| putative ribonuclease HII [Corynebacterium efficiens YS-314]
gi|259164858|gb|EEW49412.1| ribonuclease HII [Corynebacterium efficiens YS-314]
Length=231
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/199 (61%), Positives = 145/199 (73%), Gaps = 0/199 (0%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSE 76
L+ +RT E AL R GLGPVAGVDE GRGAC GP+ +AAC+L IA LA L DSK+LS
Sbjct 7 LKQLRTYEVALSRHGLGPVAGVDEAGRGACCGPISIAACILPDRPIADLAVLTDSKQLSP 66
Query 77 QAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR 136
R +L PL+ ++AVA+ V+ I +A++DR G+ ANI GMRRAVA L VRPGYVL+D FR
Sbjct 67 PVRARLMPLVKKHAVAWSVIHISAADIDRFGIQHANISGMRRAVAALEVRPGYVLTDAFR 126
Query 137 VPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHS 196
+PGLP PSLP+ GGDA+A CIAAASVLAK +RD +M + P YG A HKGYST H
Sbjct 127 IPGLPCPSLPIPGGDASARCIAAASVLAKQTRDEIMTDMAQQFPQYGLAGHKGYSTKVHM 186
Query 197 RALARLGPCPQHRYSFINV 215
A+ R G PQHRYS+ NV
Sbjct 187 DAVRRHGASPQHRYSYANV 205
>gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
gi|326953187|gb|AEA26884.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
Length=265
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/212 (67%), Positives = 154/212 (73%), Gaps = 4/212 (1%)
Query 5 W-PPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA 63
W P R V+R+S G TL+S LHR GLGPVAGVDE GRGACAGPLVVAACVL PG
Sbjct 22 WRPERAVVRRSAG---NWTLQSTLHRHGLGPVAGVDEAGRGACAGPLVVAACVLRPGDAQ 78
Query 64 SLAALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGL 123
LA L DSK L+ ARE+ F L+ R AV VV IP E+DRRGVH ANIEGMRRAVAGL
Sbjct 79 RLAGLTDSKLLTAAAREEYFELLTRRAVDLSVVVIPPREIDRRGVHAANIEGMRRAVAGL 138
Query 124 AVRPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYG 183
A RPGYVL+DGF V G P+L V GD AAC+AAASVLAKV+RDR+MV LD P YG
Sbjct 139 AQRPGYVLTDGFPVRGFGAPALAVPKGDLVAACVAAASVLAKVTRDRIMVELDERLPQYG 198
Query 184 FAEHKGYSTPAHSRALARLGPCPQHRYSFINV 215
FA HKGY TP H ALA GP +HRYSF+NV
Sbjct 199 FAVHKGYCTPVHDAALAAHGPSAEHRYSFVNV 230
>gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia sp. P1]
Length=234
Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/223 (60%), Positives = 150/223 (68%), Gaps = 4/223 (1%)
Query 29 RGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKLFPLICR 88
R GLGPVAGVDE GRGA AGPLVVAACVL P A+L L DSK L+ ARE + I +
Sbjct 1 RHGLGPVAGVDEAGRGASAGPLVVAACVLRPADAAALDGLTDSKLLTASAREHWYGRIRK 60
Query 89 YAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLA-VRPGYVLSDGFRVPGLPMPSLPV 147
A+ VV IP AEVDRRGVH+ANIEGMRRAVA L V PGYVL+DGF V G P+L V
Sbjct 61 RALDLAVVVIPPAEVDRRGVHIANIEGMRRAVAALTTVPPGYVLTDGFAVRGFGRPALAV 120
Query 148 IGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALARLGPCPQ 207
GD AACIAAASVLAKV+RDR+M LDA+H YGFA HKGY+TP H AL GPCP+
Sbjct 121 PKGDRVAACIAAASVLAKVTRDRIMTELDAEHAAYGFAVHKGYNTPEHEGALRAHGPCPE 180
Query 208 HRYSFINVRRVASGSNTAEVADGQPDPRDGTAQTGE---GRWS 247
HR+SF NV VA + + DP + TGE RW
Sbjct 181 HRFSFANVAAVAGREVPGGLVHNETDPDEVLGDTGEVEPARWE 223
>gi|334697156|gb|AEG81953.1| Ribonuclease HII [Corynebacterium ulcerans 809]
Length=240
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/211 (59%), Positives = 157/211 (75%), Gaps = 3/211 (1%)
Query 6 PPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASL 65
P IRK L+ +RT E L + GLGPVAG+DE GRG+C GP+ +AAC+L P IA+L
Sbjct 17 PQEIKIRK---LKYLRTFEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPPRPIAAL 73
Query 66 AALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAV 125
A L DSKKLS + RE+L+PLI ++AV++ ++ IP++E+D G+ ANI GMRRAVA L+
Sbjct 74 ATLTDSKKLSPRMREELYPLIKKHAVSWSILHIPASEIDAYGIQHANISGMRRAVALLSE 133
Query 126 RPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFA 185
+PGY L D RVPGLP PSLPVIGGDAAA CIAAASVLAK SRD +M+ LD ++PGYG
Sbjct 134 KPGYALIDAMRVPGLPCPSLPVIGGDAAARCIAAASVLAKQSRDELMIDLDKEYPGYGLG 193
Query 186 EHKGYSTPAHSRALARLGPCPQHRYSFINVR 216
+HKGY T +H A+ R G P+HRYS+ NVR
Sbjct 194 DHKGYGTKSHIDAVRRHGGTPEHRYSYANVR 224
>gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
gi|62390872|ref|YP_226274.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
gi|41326211|emb|CAF20373.1| PROBABLE RIBONUCLEASE HII PROTEIN [Corynebacterium glutamicum
ATCC 13032]
Length=222
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/201 (57%), Positives = 142/201 (71%), Gaps = 0/201 (0%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSE 76
L+ +RT E L R GLGPVAGVDE GRGAC GP+ +AAC+L I LAAL DSKKLS
Sbjct 4 LKHLRTFEVTLSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSA 63
Query 77 QAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR 136
REKL PLI ++A+A+ V+ I + ++DR G+ ANI GMRRAVA L +PGYVL+D +
Sbjct 64 STREKLMPLIKKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMK 123
Query 137 VPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHS 196
VPG +P LP+IGGDA+A CIAAASVLAK +RD +M + D+P YG HKGYST H
Sbjct 124 VPGFTVPYLPIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHM 183
Query 197 RALARLGPCPQHRYSFINVRR 217
A+ G P+HRYS+ NV +
Sbjct 184 DAVRHHGASPEHRYSYANVAK 204
>gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellulolyticus 11B]
gi|189043529|sp|A0LV66.1|RNH2_ACIC1 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|117649224|gb|ABK53326.1| Ribonuclease H [Acidothermus cellulolyticus 11B]
Length=307
Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/213 (60%), Positives = 144/213 (68%), Gaps = 2/213 (0%)
Query 24 ESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKLF 83
E L R GL PVAGVDE GRGACAGPLVVAA +LG R +A L DSK+L+ ARE ++
Sbjct 35 ERRLARLGLEPVAGVDEAGRGACAGPLVVAAVILGSDRRNRIAGLADSKQLTPAARESIY 94
Query 84 PLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPGLPMP 143
I A+A+ VV IPS+EVD GVH ANI GMRRAVAGLAVRP YVL+DGF + GL P
Sbjct 95 NEIISRALAWSVVVIPSSEVDELGVHAANITGMRRAVAGLAVRPAYVLTDGFSIAGLNAP 154
Query 144 SLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALARLG 203
L V GD A ACIAAASV+AKV+RDR+MV L P Y FA HKGY T H ALAR G
Sbjct 155 GLAVCKGDEAVACIAAASVVAKVTRDRLMVELHEKFPMYEFATHKGYVTAGHRAALARHG 214
Query 204 PCPQHRYSFINVRRVASGSN--TAEVADGQPDP 234
PCP+HR SF+ VRR E+AD P
Sbjct 215 PCPEHRRSFVTVRRAGGRMELRITELADSDDSP 247
>gi|337291043|ref|YP_004630064.1| ribonuclease HII [Corynebacterium ulcerans BR-AD22]
gi|334699349|gb|AEG84145.1| Ribonuclease HII [Corynebacterium ulcerans BR-AD22]
Length=240
Score = 231 bits (589), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/206 (60%), Positives = 154/206 (75%), Gaps = 3/206 (1%)
Query 11 IRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDD 70
IRK L+ +RT E L + GLGPVAG+DE GRG+C GP+ +AAC+L P I +LA L D
Sbjct 22 IRK---LKYLRTFEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPPRPIVALATLTD 78
Query 71 SKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYV 130
SKKLS + RE+L+PLI ++AVA+ ++ IP++E+D G+ ANI GMRRAVA L+ +PGY
Sbjct 79 SKKLSPRMREELYPLIKKHAVAWSILHIPASEIDAYGIQHANISGMRRAVALLSEKPGYA 138
Query 131 LSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGY 190
L D RVPGLP PSLPVIGGDAAA CIAAASVLAK SRD +M+ LD +PGYG +HKGY
Sbjct 139 LIDAMRVPGLPCPSLPVIGGDAAARCIAAASVLAKQSRDELMIDLDKAYPGYGLGDHKGY 198
Query 191 STPAHSRALARLGPCPQHRYSFINVR 216
T +H A+ R G P+HRYS+ NVR
Sbjct 199 GTKSHIDAVRRHGGTPEHRYSYANVR 224
>gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141]
gi|255297812|gb|EET77123.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141]
Length=213
Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/201 (63%), Positives = 147/201 (74%), Gaps = 0/201 (0%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSE 76
L+ RT E AL + GLGPVAG DE GRGAC GP+ +AACV+ I LAAL DSKKL+
Sbjct 4 LKQRRTYEVALSKAGLGPVAGADEAGRGACCGPITIAACVMPDRPIKELAALTDSKKLTP 63
Query 77 QAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR 136
+ REKLFPLI AV + VV I + ++D+RG+ ANI GMRRAVA L RPGYVL+D
Sbjct 64 KQREKLFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLETRPGYVLTDALF 123
Query 137 VPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHS 196
+PGL P LP+IGGDAAA CIAAASVLAKVSRD +M LDA +PGYG A HKGY T AH
Sbjct 124 IPGLTQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDARYPGYGLASHKGYGTKAHE 183
Query 197 RALARLGPCPQHRYSFINVRR 217
A+A LG CP+HR S+ NVRR
Sbjct 184 AAIAALGACPEHRMSYENVRR 204
>gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacterium amycolatum SK46]
gi|213952731|gb|EEB64113.1| ribonuclease HII [Corynebacterium amycolatum SK46]
Length=205
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/194 (60%), Positives = 143/194 (74%), Gaps = 0/194 (0%)
Query 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82
+E AL + GLGPVAGVDE GRGACAGP+V+AAC L IA L L DSKKL+ ARE+L
Sbjct 1 MEVALAKRGLGPVAGVDEAGRGACAGPIVIAACCLPERPIAELDKLTDSKKLTPAARERL 60
Query 83 FPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPGLPM 142
FPLI R+A+++ V IP++ +D+ G+ AN+ GMRRAVAGL RPGYVL+D +V G
Sbjct 61 FPLIQRFAISFCVTTIPASYIDQFGIQDANVTGMRRAVAGLEQRPGYVLTDALKVSGFTA 120
Query 143 PSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALARL 202
P LPVIGGD+ CIAAASVLAKV+RDR+MV L +P YG A HKGY T +H A++R
Sbjct 121 PYLPVIGGDSTCRCIAAASVLAKVTRDRIMVDLSEKYPDYGLAGHKGYGTASHMEAISRH 180
Query 203 GPCPQHRYSFINVR 216
G P+HR+S+ NVR
Sbjct 181 GATPEHRWSYRNVR 194
>gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291]
gi|227078920|gb|EEI16883.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291]
Length=213
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/201 (59%), Positives = 143/201 (72%), Gaps = 0/201 (0%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSE 76
L+ +RT E AL + GLGPVAGVDE GRGAC GP+ VAACVL P +A L L DSK+L
Sbjct 4 LKQLRTYEVALDKAGLGPVAGVDEAGRGACFGPVTVAACVLPPRPLAQLDGLTDSKQLRP 63
Query 77 QAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR 136
AR L+ IC A+++ VV IP+AE+DRRG+ VAN++G RRAVA L RPGYVL D R
Sbjct 64 VARASLYDAICDVALSFAVVHIPAAEIDRRGIQVANVDGARRAVAKLGARPGYVLVDALR 123
Query 137 VPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHS 196
VPGL P LP+IGGD+ A CIAAASVLAKVSRDR++ + + YG A HKGY T AH
Sbjct 124 VPGLTAPQLPIIGGDSTARCIAAASVLAKVSRDRLVTEMAQRYADYGIAGHKGYGTQAHM 183
Query 197 RALARLGPCPQHRYSFINVRR 217
A+ R G +HRYS+ NVR+
Sbjct 184 AAVRRYGASDEHRYSYANVRQ 204
>gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305537|gb|EFQ81605.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035]
Length=213
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/201 (63%), Positives = 146/201 (73%), Gaps = 0/201 (0%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSE 76
L+ RT E AL + GLGPVAGVDE GRGAC GP+ +AACV+ I LA L DSKKL+
Sbjct 4 LKQRRTYEVALSKAGLGPVAGVDEAGRGACCGPITIAACVMPDRPIKELAQLTDSKKLTP 63
Query 77 QAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR 136
+ REKLFPLI AV + VV I + ++D+RG+ ANI GMRRAVA L RPGYVL+D
Sbjct 64 KQREKLFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLEARPGYVLTDALF 123
Query 137 VPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHS 196
+PGL P LP+IGGDAAA CIAAASVLAKVSRD +M LD +PGYG A HKGY T AH
Sbjct 124 IPGLTQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDVRYPGYGLASHKGYGTKAHE 183
Query 197 RALARLGPCPQHRYSFINVRR 217
A+A LG CP+HR S+ NVRR
Sbjct 184 AAIAALGACPEHRMSYENVRR 204
>gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium pseudotuberculosis I19]
Length=204
Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/191 (59%), Positives = 143/191 (75%), Gaps = 3/191 (1%)
Query 6 PPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASL 65
P R IRK L+ +RT E L + GLGPVAG+DE GRG+C GP+ +AAC+L IA+L
Sbjct 17 PQRVKIRK---LKHLRTFEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAAL 73
Query 66 AALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAV 125
A L DSKKLS + RE+L+PLI +YAVA+ ++ I ++E+DR G+ ANI GMRRA+A L+
Sbjct 74 ATLTDSKKLSSRMREELYPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSK 133
Query 126 RPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFA 185
+PGYVL D RVPGL PSLP+IGGD AA CIAAASVLAK SRD +M+ LD ++PGYG
Sbjct 134 QPGYVLIDAMRVPGLTCPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLG 193
Query 186 EHKGYSTPAHS 196
+HKGY T +H+
Sbjct 194 DHKGYGTKSHA 204
>gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
gi|262184381|ref|ZP_06043802.1| ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
gi|227454409|gb|ACP33162.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
Length=213
Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/200 (61%), Positives = 142/200 (71%), Gaps = 2/200 (1%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIA-SLAALDDSKKLS 75
L+ RT E AL + GLGPVAGVDE GRGAC GP+ +AAC+L P RI L LDDSKKL+
Sbjct 4 LKQKRTYEVALSKAGLGPVAGVDEAGRGACCGPVTIAACIL-PDRILPGLEWLDDSKKLT 62
Query 76 EQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGF 135
AREKL P+I R A+A+ VV I + +D G+ AN+ GMRRAVA L +RPGYVLSD
Sbjct 63 PAAREKLEPVIKRRALAWSVVHIGAKGIDAFGIQHANLSGMRRAVAQLGIRPGYVLSDAL 122
Query 136 RVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAH 195
VPGLP P LP+IGGD AA CIAAASVLAKVSRDR+M + +PGY HKGY T H
Sbjct 123 FVPGLPAPQLPIIGGDTAARCIAAASVLAKVSRDRLMADVAKQYPGYALETHKGYGTAVH 182
Query 196 SRALARLGPCPQHRYSFINV 215
A+ARLG P+HR S+ NV
Sbjct 183 QEAIARLGATPEHRMSYRNV 202
>gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium diphtheriae NCTC 13129]
gi|73917606|sp|Q6NGJ8.1|RNH2_CORDI RecName: Full=Ribonuclease HII; Short=RNase HII
gi|38200356|emb|CAE50042.1| ribonuclease HII [Corynebacterium diphtheriae]
Length=229
Score = 228 bits (581), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 142/200 (71%), Gaps = 0/200 (0%)
Query 17 LRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSE 76
L+ +RT E L + GLGPVAGVDE GRG+C GP+ +AAC++ IA L AL DSKKLS
Sbjct 18 LKHLRTFEVTLDKHGLGPVAGVDEAGRGSCCGPITIAACIMPQRPIAQLQALTDSKKLSA 77
Query 77 QAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR 136
R +L+PLI +YA+A+ ++ I +AE+DR G+ ANI GMRRA+ L V PGYVL+D +
Sbjct 78 AKRAELYPLIKKYALAWSIIHISAAEIDREGIQHANIFGMRRAIEKLDVAPGYVLTDAMK 137
Query 137 VPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHS 196
VPGL PSLP+IGGDAA CIAAASVLAK SRD +M L +P YG +HKGY T +H
Sbjct 138 VPGLRCPSLPIIGGDAAVRCIAAASVLAKHSRDLIMDDLGGKYPEYGLEDHKGYGTKSHM 197
Query 197 RALARLGPCPQHRYSFINVR 216
A+ G P+HRYS+ NV+
Sbjct 198 DAVRHHGATPEHRYSYSNVK 217
>gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora viridis DSM 43017]
gi|256584905|gb|ACU96038.1| RNase HII [Saccharomonospora viridis DSM 43017]
Length=275
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/207 (64%), Positives = 152/207 (74%), Gaps = 4/207 (1%)
Query 6 PPRTVIRKSGGLRGMRTLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASL 65
PPR VIR L++AL R GLGPV GVDE GRGACAGPLVVAACVL PG A L
Sbjct 6 PPRAVIRGDISW----ALQAALDRRGLGPVVGVDEAGRGACAGPLVVAACVLRPGDGAKL 61
Query 66 AALDDSKKLSEQAREKLFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAV 125
L DSK L+ AR++++ I R A+ Y +V IP AE+D +GVH ANIEGMRRAVA L+
Sbjct 62 PELADSKSLTPLARDRVYERILRRALDYSIVVIPPAEIDVQGVHTANIEGMRRAVAALSQ 121
Query 126 RPGYVLSDGFRVPGLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFA 185
RPGYVL DGFRVPGLP PS+PV+ GD A AC+AAASVLAKV+RDR+MV L A++P YGF
Sbjct 122 RPGYVLLDGFRVPGLPAPSVPVLKGDRAVACVAAASVLAKVTRDRIMVGLHAEYPVYGFE 181
Query 186 EHKGYSTPAHSRALARLGPCPQHRYSF 212
HKGY+T H ALA GPC HR+SF
Sbjct 182 VHKGYTTVEHRTALAEHGPCEAHRWSF 208
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 397943428394
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40