BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2907c
Length=176
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610044|ref|NP_217423.1| 16S rRNA-processing protein RimM [M... 340 4e-92
gi|183981814|ref|YP_001850105.1| 16S rRNA processing protein Rim... 244 3e-63
gi|118617623|ref|YP_905955.1| 16S rRNA-processing protein RimM [... 243 7e-63
gi|240170572|ref|ZP_04749231.1| 16S rRNA-processing protein [Myc... 242 1e-62
gi|254821201|ref|ZP_05226202.1| 16S rRNA-processing protein RimM... 241 3e-62
gi|118463723|ref|YP_882934.1| 16S rRNA-processing protein RimM [... 240 7e-62
gi|41409073|ref|NP_961909.1| 16S rRNA-processing protein [Mycoba... 239 1e-61
gi|15827851|ref|NP_302114.1| 16S rRNA-processing protein RimM [M... 236 1e-60
gi|254776207|ref|ZP_05217723.1| 16S rRNA-processing protein RimM... 235 2e-60
gi|296171461|ref|ZP_06852747.1| 16S rRNA processing protein RimM... 234 5e-60
gi|342858242|ref|ZP_08714897.1| 16S rRNA-processing protein RimM... 231 4e-59
gi|108798935|ref|YP_639132.1| 16S rRNA-processing protein RimM [... 221 3e-56
gi|333991269|ref|YP_004523883.1| 16S rRNA processing protein Rim... 214 5e-54
gi|145224752|ref|YP_001135430.1| 16S rRNA-processing protein Rim... 209 1e-52
gi|169630308|ref|YP_001703957.1| 16S rRNA-processing protein Rim... 209 1e-52
gi|120403181|ref|YP_953010.1| 16S rRNA-processing protein RimM [... 208 2e-52
gi|289763083|ref|ZP_06522461.1| 16S rRNA processing protein rimM... 204 6e-51
gi|111023496|ref|YP_706468.1| 16S rRNA-processing protein RimM [... 200 8e-50
gi|226365998|ref|YP_002783781.1| 16S rRNA-processing protein Rim... 198 3e-49
gi|226305933|ref|YP_002765893.1| 16S rRNA processing protein Rim... 197 6e-49
gi|118469073|ref|YP_886777.1| 16S rRNA-processing protein RimM [... 197 6e-49
gi|229491346|ref|ZP_04385170.1| 16S rRNA processing protein RimM... 197 7e-49
gi|312139214|ref|YP_004006550.1| 16S rRNA processing protein rim... 193 8e-48
gi|54026126|ref|YP_120368.1| 16S rRNA-processing protein RimM [N... 192 2e-47
gi|333919236|ref|YP_004492817.1| ribosome maturation factor rimM... 179 1e-43
gi|319950997|ref|ZP_08024867.1| 16S rRNA-processing protein RimM... 179 2e-43
gi|296139336|ref|YP_003646579.1| 16S rRNA processing protein Rim... 179 2e-43
gi|343925313|ref|ZP_08764838.1| ribosome maturation factor RimM ... 172 1e-41
gi|257055029|ref|YP_003132861.1| 16S rRNA processing protein Rim... 163 8e-39
gi|317508408|ref|ZP_07966078.1| 16S rRNA processing protein RimM... 161 4e-38
gi|326382874|ref|ZP_08204564.1| 16S rRNA-processing protein RimM... 159 2e-37
gi|271963365|ref|YP_003337561.1| 16S rRNA processing protein Rim... 158 2e-37
gi|134102488|ref|YP_001108149.1| 16S rRNA processing protein [Sa... 158 2e-37
gi|297559208|ref|YP_003678182.1| 16S rRNA processing protein Rim... 153 8e-36
gi|256379918|ref|YP_003103578.1| 16S rRNA processing protein Rim... 152 3e-35
gi|262202022|ref|YP_003273230.1| 16S rRNA processing protein Rim... 151 3e-35
gi|296268965|ref|YP_003651597.1| 16S rRNA processing protein Rim... 151 4e-35
gi|296394373|ref|YP_003659257.1| 16S rRNA processing protein Rim... 150 5e-35
gi|300783879|ref|YP_003764170.1| 16S rRNA processing protein Rim... 150 7e-35
gi|238063307|ref|ZP_04608016.1| ribosome maturation factor rimM ... 149 1e-34
gi|330466289|ref|YP_004404032.1| 16S rRNA-processing protein Rim... 148 4e-34
gi|302865889|ref|YP_003834526.1| 16S rRNA processing protein Rim... 147 4e-34
gi|315502433|ref|YP_004081320.1| 16S rRNA processing protein rim... 146 1e-33
gi|159036842|ref|YP_001536095.1| 16S rRNA-processing protein Rim... 145 2e-33
gi|302525174|ref|ZP_07277516.1| 16S rRNA processing protein RimM... 145 2e-33
gi|72161068|ref|YP_288725.1| 16S rRNA-processing protein RimM [T... 145 3e-33
gi|145593858|ref|YP_001158155.1| 16S rRNA-processing protein Rim... 144 5e-33
gi|269127627|ref|YP_003300997.1| 16S rRNA processing protein Rim... 144 7e-33
gi|311898560|dbj|BAJ30968.1| putative 16S rRNA-processing protei... 141 3e-32
gi|19553253|ref|NP_601255.1| 16S rRNA-processing protein RimM [C... 139 1e-31
>gi|15610044|ref|NP_217423.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis
H37Rv]
gi|15842450|ref|NP_337487.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis
CDC1551]
gi|31794083|ref|NP_856576.1| 16S rRNA-processing protein RimM [Mycobacterium bovis AF2122/97]
83 more sequence titles
Length=176
Score = 340 bits (872), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 176/176 (100%), Positives = 176/176 (100%), Gaps = 0/176 (0%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR
Sbjct 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG
Sbjct 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE
Sbjct 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
>gi|183981814|ref|YP_001850105.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
gi|238689244|sp|B2HJL4.1|RIMM_MYCMM RecName: Full=Ribosome maturation factor rimM
gi|183175140|gb|ACC40250.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
Length=174
Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/175 (75%), Positives = 144/175 (83%), Gaps = 3/175 (1%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELV+GRVVK+HG+TGEVVVEIRTD+P RF PG LRAK DGG + +YVIE VR
Sbjct 1 MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T G+
Sbjct 58 EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
>gi|118617623|ref|YP_905955.1| 16S rRNA-processing protein RimM [Mycobacterium ulcerans Agy99]
gi|166226457|sp|A0PQ65.1|RIMM_MYCUA RecName: Full=Ribosome maturation factor rimM
gi|118569733|gb|ABL04484.1| 16S rRNA processing protein RimM [Mycobacterium ulcerans Agy99]
Length=174
Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 130/175 (75%), Positives = 144/175 (83%), Gaps = 3/175 (1%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELV+GRVVK+HG+TGEVVVEIRTD+P RF PG LRAK DGG + +YVIE VR
Sbjct 1 MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPI+EPDTYYDHQL GL V+T G+
Sbjct 58 EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIEEPDTYYDHQLEGLRVRTTAGQD 117
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
>gi|240170572|ref|ZP_04749231.1| 16S rRNA-processing protein [Mycobacterium kansasii ATCC 12478]
Length=177
Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/179 (74%), Positives = 149/179 (84%), Gaps = 7/179 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRVVK+HG+ GE+VVEIRTDDP +RFAPGT LRAK D G E S YVI+SVR
Sbjct 1 MELVVGRVVKAHGIGGELVVEIRTDDPDNRFAPGTLLRAKSSRDPGHERS---YVIDSVR 57
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
HG RLLVRL GV DRDAADALRGS+FVID+DDLPPI+E DTYYDHQL GL V+TATG+
Sbjct 58 DHGARLLVRLVGVTDRDAADALRGSVFVIDSDDLPPIEEADTYYDHQLEGLRVRTATGQD 117
Query 121 VGVVTEVVHTAAGELLAVK----RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HTAAGELLAV+ EVLVPFVRAIVTSVSL+DG+++IDPP GLL+L
Sbjct 118 VGVVAEVLHTAAGELLAVRPADGSQEGEVLVPFVRAIVTSVSLEDGVLQIDPPDGLLDL 176
>gi|254821201|ref|ZP_05226202.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare
ATCC 13950]
Length=171
Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/175 (72%), Positives = 143/175 (82%), Gaps = 4/175 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MEL VGRVVK+HG+ GE+VVEIRTDDP RFA G LR K GG +V+ES R
Sbjct 1 MELTVGRVVKAHGIGGEIVVEIRTDDPDARFATGNALRGKASRGGGER----DFVVESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HGGRLLVRLAG++DRDAADALRG+LFV+D+DDLPPIDE DTYYDH+L GL V+T TG
Sbjct 57 EHGGRLLVRLAGISDRDAADALRGTLFVVDSDDLPPIDEADTYYDHELEGLHVRTITGRD 116
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HTAAGELLAV+R+S E LVPFV AIVTSVSLDDG +EIDPP GLL+L
Sbjct 117 VGVVAEVLHTAAGELLAVRRESGEALVPFVTAIVTSVSLDDGTIEIDPPEGLLDL 171
>gi|118463723|ref|YP_882934.1| 16S rRNA-processing protein RimM [Mycobacterium avium 104]
gi|166226451|sp|A0QJ46.1|RIMM_MYCA1 RecName: Full=Ribosome maturation factor rimM
gi|118165010|gb|ABK65907.1| 16S rRNA processing protein RimM [Mycobacterium avium 104]
Length=175
Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/179 (73%), Positives = 148/179 (83%), Gaps = 8/179 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MEL VGRVVK+HG++GE+VVEIRTDDPA RFAPG LRAK P GG E S V IES R
Sbjct 1 MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAK-PSRGGPERSCV---IESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HGGRLLVRLAGV DRDAADALRG+LFV+D+ +LP IDEPDTYYDHQL GL V+T G+
Sbjct 57 EHGGRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQR 116
Query 121 VGVVTEVVHTAAGELLAVKRDSD----EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V EV+HTAAGELLAV+ D+D EVLVPFV AIVT+VSLDDG++EIDPP GLL+L
Sbjct 117 VGAVAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175
>gi|41409073|ref|NP_961909.1| 16S rRNA-processing protein [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|59798798|sp|Q73VN8.1|RIMM_MYCPA RecName: Full=Ribosome maturation factor rimM
gi|41397432|gb|AAS05292.1| RimM [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459034|gb|EGO37984.1| 16S rRNA processing protein RimM [Mycobacterium avium subsp.
paratuberculosis S397]
Length=175
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/179 (73%), Positives = 147/179 (83%), Gaps = 8/179 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MEL VGRVVK+HG++GE+VVEIRTDDPA RFAPG LRAK P GG E S V IES R
Sbjct 1 MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAK-PSRGGPERSCV---IESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HGGRLLVRLAGV DRDAADALRG+LFV+D+ +LP IDEPDTYYDHQL GL V+T G
Sbjct 57 EHGGRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRR 116
Query 121 VGVVTEVVHTAAGELLAVKRDSD----EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V EV+HTAAGELLAV+ D+D EVLVPFV AIVT+VSLDDG++EIDPP GLL+L
Sbjct 117 VGAVAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175
>gi|15827851|ref|NP_302114.1| 16S rRNA-processing protein RimM [Mycobacterium leprae TN]
gi|221230328|ref|YP_002503744.1| 16S rRNA-processing protein RimM [Mycobacterium leprae Br4923]
gi|3914643|sp|O33016.1|RIMM_MYCLE RecName: Full=Ribosome maturation factor rimM
gi|254797758|sp|B8ZRW7.1|RIMM_MYCLB RecName: Full=Ribosome maturation factor rimM
gi|2251157|emb|CAB10628.1| hypothetical protein MLCB250.34 [Mycobacterium leprae]
gi|13093403|emb|CAC30567.1| 16S rRNA processing protein [Mycobacterium leprae]
gi|219933435|emb|CAR71711.1| 16S rRNA processing protein [Mycobacterium leprae Br4923]
Length=179
Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/175 (74%), Positives = 140/175 (80%), Gaps = 3/175 (1%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
+EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG LRAK GG E Y + R
Sbjct 8 LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T G
Sbjct 65 EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV VSLDDGIVEIDPP GLL+L
Sbjct 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
>gi|254776207|ref|ZP_05217723.1| 16S rRNA-processing protein RimM [Mycobacterium avium subsp.
avium ATCC 25291]
Length=175
Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/179 (72%), Positives = 146/179 (82%), Gaps = 8/179 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MEL VGRVVK+HG++GE+VVEIRTDDPA R APG LRAK P GG E S V IES R
Sbjct 1 MELTVGRVVKAHGISGEIVVEIRTDDPAARLAPGNTLRAK-PSRGGPERSCV---IESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HGGRLLVRLAGV DRDAADALRG+LFV+D+ +LP IDEPDTYYDHQL GL V+T G
Sbjct 57 EHGGRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRR 116
Query 121 VGVVTEVVHTAAGELLAVKRDSD----EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V EV+HTAAGELLAV+ D+D EVLVPFV AIVT+VSL+DG++EIDPP GLL+L
Sbjct 117 VGAVAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLEDGLIEIDPPDGLLDL 175
>gi|296171461|ref|ZP_06852747.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894147|gb|EFG73907.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=173
Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/176 (71%), Positives = 141/176 (81%), Gaps = 5/176 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MEL VGRV K+HG+ GEVVVEIRTDDP RFAPG LR + GG +V+ES R
Sbjct 1 MELTVGRVAKAHGIGGEVVVEIRTDDPGARFAPGNTLRGRASRGGGER----DFVVESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HGGRLL+RLAGV DRD+ADALRG++FV+D+DDLPPIDEPDTYYDHQL GL V+T G
Sbjct 57 EHGGRLLLRLAGVTDRDSADALRGTVFVVDSDDLPPIDEPDTYYDHQLEGLHVRTVAGHD 116
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HTAAGELLAV+R D E LVPFV AIVTSVSLDD +VEIDPP GLL+L
Sbjct 117 VGVVAEVLHTAAGELLAVRRGDGGEALVPFVGAIVTSVSLDDRVVEIDPPEGLLDL 172
>gi|342858242|ref|ZP_08714897.1| 16S rRNA-processing protein RimM [Mycobacterium colombiense CECT
3035]
gi|342133946|gb|EGT87126.1| 16S rRNA-processing protein RimM [Mycobacterium colombiense CECT
3035]
Length=175
Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/179 (70%), Positives = 141/179 (79%), Gaps = 8/179 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MEL VGRVVK+HG+TGEVVVE+RTDDP RFAPG LRAK G +ES R
Sbjct 1 MELTVGRVVKAHGITGEVVVEVRTDDPDARFAPGNALRAKHSRAGWER----ELTVESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+HGGRLLVRLAGV DRDAADALRG+LFV+D++ LP IDE DTYYDHQL GL V+T GE
Sbjct 57 EHGGRLLVRLAGVTDRDAADALRGTLFVVDSEALPAIDEADTYYDHQLEGLRVRTIAGEQ 116
Query 121 VGVVTEVVHTAAGELLAVKRDS----DEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VGVV EV+HTAAGELLAV++D+ EVLVPFV AIVTSVSLDDG V+IDPP GLL+L
Sbjct 117 VGVVAEVLHTAAGELLAVRQDAGDEKREVLVPFVSAIVTSVSLDDGTVDIDPPEGLLDL 175
>gi|108798935|ref|YP_639132.1| 16S rRNA-processing protein RimM [Mycobacterium sp. MCS]
gi|119868050|ref|YP_938002.1| 16S rRNA-processing protein RimM [Mycobacterium sp. KMS]
gi|126434535|ref|YP_001070226.1| 16S rRNA-processing protein RimM [Mycobacterium sp. JLS]
6 more sequence titles
Length=173
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/177 (68%), Positives = 143/177 (81%), Gaps = 5/177 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LV+GRV K+HGVTGE+VVE+RTDDP RF PG RLR + P GGAE + +V+ESVR
Sbjct 1 MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAP-RGGAERA---FVVESVR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
HGGRLL+RL GVADR AADALRG++F++D+ DLPPI+EPD YYDHQL GL+V+T G
Sbjct 57 PHGGRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVD 116
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
VG V EV+HTAAGELL+VK + E+LVPFV AIV VSL DG+VEIDPP GLL+LE
Sbjct 117 VGTVAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDLE 173
>gi|333991269|ref|YP_004523883.1| 16S rRNA processing protein RimM [Mycobacterium sp. JDM601]
gi|333487237|gb|AEF36629.1| 16S rRNA processing protein RimM [Mycobacterium sp. JDM601]
Length=173
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/180 (67%), Positives = 137/180 (77%), Gaps = 14/180 (7%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGT----RLRAKGPFDGGAEGSAVSYVI 56
MEL VGRVVK+HG+TGEVVV++RTDDP +RF PG R R + P D V+
Sbjct 1 MELTVGRVVKAHGITGEVVVDVRTDDPDERFTPGAVLCARKRGEQPRD---------VVV 51
Query 57 ESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTA 116
++VR HG RLLVRLAGV+DRDAADALRGSL VID+ DLPPIDE DTYYDHQL GL V+T
Sbjct 52 DAVRPHGSRLLVRLAGVSDRDAADALRGSLLVIDSADLPPIDEDDTYYDHQLEGLRVRTE 111
Query 117 TGEGVGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
GE +G VTEV+HT AGELLAV+R D E+LVPFV AIVTSVSL + +V IDPP GLL L
Sbjct 112 AGEDIGTVTEVLHTGAGELLAVRRTDGAELLVPFVSAIVTSVSLAEQLVWIDPPDGLLEL 171
>gi|145224752|ref|YP_001135430.1| 16S rRNA-processing protein RimM [Mycobacterium gilvum PYR-GCK]
gi|315445082|ref|YP_004077961.1| 16S rRNA processing protein RimM [Mycobacterium sp. Spyr1]
gi|189040844|sp|A4TE78.1|RIMM_MYCGI RecName: Full=Ribosome maturation factor rimM
gi|145217238|gb|ABP46642.1| 16S rRNA processing protein RimM [Mycobacterium gilvum PYR-GCK]
gi|315263385|gb|ADU00127.1| 16S rRNA processing protein RimM [Mycobacterium sp. Spyr1]
Length=173
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/177 (67%), Positives = 136/177 (77%), Gaps = 5/177 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVGRV K+HGVTGE+ VE+RTDDP RF G LR + P GGAE YVIESVR
Sbjct 1 MDLVVGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRPP-RGGAERE---YVIESVR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
HG RLLVR GVADRDAADALRG++F++D+ DLPPI++PD +YDHQL GL V T +G
Sbjct 57 THGDRLLVRFDGVADRDAADALRGTVFLVDSADLPPIEDPDEFYDHQLEGLTVITTSGGE 116
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
VG V EV+HTAAGELLAV+ D EVLVPFV AIV SVSLDD ++ IDPP GLL L+
Sbjct 117 VGKVAEVLHTAAGELLAVRTADDTEVLVPFVSAIVLSVSLDDQLITIDPPDGLLELD 173
>gi|169630308|ref|YP_001703957.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus ATCC
19977]
gi|238688780|sp|B1MDI4.1|RIMM_MYCA9 RecName: Full=Ribosome maturation factor rimM
gi|169242275|emb|CAM63303.1| Probable 16S rRNA processing protein RimM [Mycobacterium abscessus]
Length=173
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/176 (61%), Positives = 137/176 (78%), Gaps = 5/176 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGR+ ++HGVTGE+ VE+RTDDP +RFA G+ L + P GG+ + +ESVR
Sbjct 1 MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSR----RFTVESVR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+H GRLL+R AGV+DRDAADALRG+LF++D DLPPI++PD +YDHQL GL V+T G
Sbjct 57 EHSGRLLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAA 116
Query 121 VGVVTEVVHTAAGELLAVK-RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V+EV+HT GELL+V+ + E+LVPFV AIVTS+SL D ++EIDPP GLL+L
Sbjct 117 VGTVSEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDPPEGLLDL 172
>gi|120403181|ref|YP_953010.1| 16S rRNA-processing protein RimM [Mycobacterium vanbaalenii PYR-1]
gi|166226458|sp|A1T754.1|RIMM_MYCVP RecName: Full=Ribosome maturation factor rimM
gi|119955999|gb|ABM13004.1| 16S rRNA processing protein RimM [Mycobacterium vanbaalenii PYR-1]
Length=172
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/176 (65%), Positives = 136/176 (78%), Gaps = 5/176 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVGRVVK+HGVTGE+ V++RTDDP RF G LR + P GGAE +VIESVR
Sbjct 1 MDLVVGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGR-PARGGAERE---FVIESVR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
HG R+L+RL GV DRDAADALRG+LF++D+ +LPPI++PD +YDHQL G+ V T G+
Sbjct 57 SHGDRMLIRLQGVGDRDAADALRGTLFLVDSAELPPIEDPDEFYDHQLEGMAVSTTGGQP 116
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V EV+HTAAGELLAV+ D EVLVPFV AIV SVSL D +EIDPP GLL+L
Sbjct 117 VGTVAEVLHTAAGELLAVRDPDGAEVLVPFVSAIVVSVSLADNAIEIDPPEGLLDL 172
>gi|289763083|ref|ZP_06522461.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
GM 1503]
gi|289710589|gb|EFD74605.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
GM 1503]
Length=119
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR
Sbjct 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYY 104
QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYY
Sbjct 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYY 104
>gi|111023496|ref|YP_706468.1| 16S rRNA-processing protein RimM [Rhodococcus jostii RHA1]
gi|122955113|sp|Q0S2C6.1|RIMM_RHOSR RecName: Full=Ribosome maturation factor rimM
gi|110823026|gb|ABG98310.1| 16S rRNA processing protein [Rhodococcus jostii RHA1]
Length=183
Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 106/177 (60%), Positives = 132/177 (75%), Gaps = 7/177 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHG+ GE+VVE+RTD+P DRFA G LR P E + +Y +E+ R
Sbjct 1 MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKP----REQTVSTYTVEAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLL+RL GV+DR AADALRG+LFVID+ +L P D+PD +YDH+L GL V+ A G
Sbjct 57 DHSGRLLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLADGTE 116
Query 121 VGVVTEVVHTAAGELLAVKRDSD---EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VG V EV+H+AAGELL+++R D E+LVPFV AIVTSVS+ DG+ IDPP GLL+
Sbjct 117 VGTVIEVLHSAAGELLSIRRAGDQSGELLVPFVAAIVTSVSVADGVALIDPPEGLLD 173
>gi|226365998|ref|YP_002783781.1| 16S rRNA-processing protein RimM [Rhodococcus opacus B4]
gi|254797760|sp|C1B2R9.1|RIMM_RHOOB RecName: Full=Ribosome maturation factor rimM
gi|226244488|dbj|BAH54836.1| putative 16S rRNA processing protein RimM [Rhodococcus opacus
B4]
Length=183
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/177 (60%), Positives = 133/177 (76%), Gaps = 7/177 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHG+ GE+VVE+RTD+P DRFA G LR P E + +Y +E+ R
Sbjct 1 MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKP----REQTVNTYRVEAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+H GRLL+RL GV DR AADALRG+LFVID+ +L P D+PD +YDH+L GL V+ A G
Sbjct 57 EHSGRLLLRLEGVPDRTAADALRGTLFVIDSAELVPSDDPDEFYDHELEGLSVRLADGTE 116
Query 121 VGVVTEVVHTAAGELLAVKR---DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
+G V EV+H+AAGELL+++R S E+LVPFV AIVTSVS+ DG+V IDPP GLL+
Sbjct 117 LGAVIEVLHSAAGELLSIRRAGEQSGELLVPFVAAIVTSVSVADGVVVIDPPEGLLD 173
>gi|226305933|ref|YP_002765893.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis PR4]
gi|259585650|sp|C0ZXR9.1|RIMM_RHOE4 RecName: Full=Ribosome maturation factor rimM
gi|226185050|dbj|BAH33154.1| probable 16S rRNA processing protein RimM [Rhodococcus erythropolis
PR4]
Length=190
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/177 (59%), Positives = 132/177 (75%), Gaps = 7/177 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHG+ GE+VVE+RTD+P DRFA G+ LR + P E + SY +E+ R
Sbjct 1 MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKP----RESTLKSYTVEAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLL+RL GV+DR ADALRG+LFVID+ +L P D+PD +YDH+L GL V G
Sbjct 57 DHSGRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTE 116
Query 121 VGVVTEVVHTAAGELLAVKR---DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VG V EV+H+AAGELL+++R S E+L+PFV AIVTSVS+ DG+V I+PP GLL+
Sbjct 117 VGSVIEVLHSAAGELLSIRRTGETSGELLIPFVAAIVTSVSIADGVVMIEPPEGLLD 173
>gi|118469073|ref|YP_886777.1| 16S rRNA-processing protein RimM [Mycobacterium smegmatis str.
MC2 155]
gi|166226453|sp|A0QV39.1|RIMM_MYCS2 RecName: Full=Ribosome maturation factor rimM
gi|118170360|gb|ABK71256.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis str.
MC2 155]
Length=173
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/177 (62%), Positives = 130/177 (74%), Gaps = 7/177 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVGRVVK+HG++GEVVVEIRTDDP RFAPG LR + G+ Y IESVR
Sbjct 1 MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
HGGRLLVRLAGVADR+ AD LRG++F++D +LP ID+PD +YDH+L G+ V T
Sbjct 56 AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
Query 121 VGVVTEVVHTAAGELLAVKRDS--DEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V EV+HTA GE+LAVK D E+LVPFV AIVTSVS + + IDPP GLL+L
Sbjct 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
>gi|229491346|ref|ZP_04385170.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
gi|229321631|gb|EEN87428.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
Length=190
Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/177 (59%), Positives = 132/177 (75%), Gaps = 7/177 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHG+ GE+VVE+RTD+P DRFA G+ LR + P E + SY +E+ R
Sbjct 1 MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKP----RESTLKSYTVEAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLL+RL GV+DR ADALRG+LFVID+ +L P D+PD +YDH+L GL V G
Sbjct 57 DHSGRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGAE 116
Query 121 VGVVTEVVHTAAGELLAVKR---DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VG V EV+H+AAGELL+++R S E+L+PFV AIVTSVS+ DG+V I+PP GLL+
Sbjct 117 VGSVIEVLHSAAGELLSIRRAGETSGELLIPFVAAIVTSVSIADGVVVIEPPEGLLD 173
>gi|312139214|ref|YP_004006550.1| 16S rRNA processing protein rimm [Rhodococcus equi 103S]
gi|325673479|ref|ZP_08153170.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
gi|311888553|emb|CBH47865.1| 16S rRNA processing protein RimM [Rhodococcus equi 103S]
gi|325555500|gb|EGD25171.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
Length=188
Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/182 (58%), Positives = 132/182 (73%), Gaps = 12/182 (6%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHG+ GE+VVE+RTD+P +RFA G LR + P E +Y +E+ R
Sbjct 1 MELVVGRVAKSHGIRGELVVEVRTDEPEERFAVGAELRGRKP----RENKLHTYTVEAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGE- 119
+H GRLL+RL GVADR AAD LRG+LFVID DL P D+PD +YDH+L GL V+ A G
Sbjct 57 EHSGRLLLRLEGVADRTAADNLRGTLFVIDTADLTPSDDPDEFYDHELEGLTVRMAAGRP 116
Query 120 ----GVGVVTEVVHTAAGELLAVK---RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGL 172
VG V EV+H+AAGELL+++ + S E+LVPFV AIV +VS+ DG++EIDPP GL
Sbjct 117 DAGTPVGTVLEVLHSAAGELLSIRPEGQTSGELLVPFVTAIVPTVSVADGLIEIDPPEGL 176
Query 173 LN 174
L+
Sbjct 177 LD 178
>gi|54026126|ref|YP_120368.1| 16S rRNA-processing protein RimM [Nocardia farcinica IFM 10152]
gi|59798616|sp|Q5YS37.1|RIMM_NOCFA RecName: Full=Ribosome maturation factor rimM
gi|54017634|dbj|BAD59004.1| putative 16S rRNA processing protein [Nocardia farcinica IFM
10152]
Length=174
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/178 (59%), Positives = 130/178 (74%), Gaps = 6/178 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHGV GE+VVE+RTDDP RFA GT LR + P + +ES R
Sbjct 1 MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLP----RSTEVREFTVESAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+H GRLLV LAGV DR AADALRG+LFV+D+ +LPP D+PD +YDH+L GL V+ G
Sbjct 57 EHSGRLLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAV 116
Query 121 VGVVTEVVHTAAGELLAVK--RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
+G VTEV+H+AAGELL+++ D E+L+PFV AIV +VS+ +G V IDPP GLL+ E
Sbjct 117 LGTVTEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLDPE 174
>gi|333919236|ref|YP_004492817.1| ribosome maturation factor rimM [Amycolicicoccus subflavus DQS3-9A1]
gi|333481457|gb|AEF40017.1| Ribosome maturation factor rimM [Amycolicicoccus subflavus DQS3-9A1]
Length=171
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/177 (55%), Positives = 130/177 (74%), Gaps = 8/177 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVS-YVIESV 59
MELVVGR+ KSHG+ GE+VVE+RTD+P RFA G +LRA+ P SAV+ + +E+
Sbjct 1 MELVVGRIAKSHGIRGEIVVEVRTDEPEQRFAVGAQLRARAP-----RSSAVTAFTVEAA 55
Query 60 RQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGE 119
R+H GRLLVRLAGVADR++AD+LRG LFV+D+ +LP + D YYDH+L GL+V+ A+G
Sbjct 56 REHSGRLLVRLAGVADRESADSLRGMLFVVDSSELPASGD-DEYYDHELEGLVVRFASGG 114
Query 120 GVGVVTEVVHTAAGELLAVK-RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
+GV+ EV+HTAAGE L+++ D EVL+PF+ V V + G VE+ PP GLL L
Sbjct 115 DLGVIREVLHTAAGETLSIEATDGREVLIPFITDFVPVVDVPGGFVEVTPPDGLLEL 171
>gi|319950997|ref|ZP_08024867.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
gi|319435340|gb|EFV90590.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
Length=177
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/176 (57%), Positives = 122/176 (70%), Gaps = 3/176 (1%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRVVKSHGV GE+VVE+RTD P +RFAPG RL G G + +E+ R
Sbjct 1 MELVVGRVVKSHGVRGELVVEVRTDSPEERFAPGARL--TGRVGKGDRATDRDVTVEAAR 58
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLLVRLAGV+DRD ADALRG L ++D+ +LP ++PD Y+DHQLVGL V +G
Sbjct 59 SHSGRLLVRLAGVSDRDTADALRGMLLLVDSAELPDPEDPDEYHDHQLVGLRVLDTSGAP 118
Query 121 VGVVTEVVHTAAGELLAVK-RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
+G VTE+VHT AGELL ++ D + LVPFV +V V + G IDPP GLL+L
Sbjct 119 LGEVTEIVHTPAGELLGIRLTDGADALVPFVTEMVPEVDVPGGTCVIDPPEGLLDL 174
>gi|296139336|ref|YP_003646579.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola
DSM 20162]
gi|296027470|gb|ADG78240.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola
DSM 20162]
Length=173
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/177 (56%), Positives = 123/177 (70%), Gaps = 5/177 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
MELVVGRV KSHG+ GE+VV++RTD P RFA G L + P + +Y + + R
Sbjct 1 MELVVGRVAKSHGIRGEIVVDVRTDSPELRFADGAVLTGRRPRAKDTQ----TYTVAASR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+H GRLLVRL GV DR AAD LRG+LFVID+ D+ P D+PD +YDH+L GL V+TA G
Sbjct 57 EHSGRLLVRLEGVTDRTAADELRGTLFVIDSADVQPSDDPDEFYDHELEGLAVRTADGTE 116
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
VGV+ EV+H GELL+VK D E+L+PFV AIV V + G +EIDPP GLL+ E
Sbjct 117 VGVIAEVLHPPGGELLSVKAPDGREILIPFVTAIVPVVDVAGGFIEIDPPEGLLDPE 173
>gi|343925313|ref|ZP_08764838.1| ribosome maturation factor RimM [Gordonia alkanivorans NBRC 16433]
gi|343764752|dbj|GAA11764.1| ribosome maturation factor RimM [Gordonia alkanivorans NBRC 16433]
Length=177
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/175 (55%), Positives = 126/175 (72%), Gaps = 7/175 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVGRVVKSHG+ GE+VV++RTD+P RFA G+ LR + P GG G + + + R
Sbjct 1 MDLVVGRVVKSHGIRGELVVDVRTDEPELRFARGSVLRGRLPRGGGERG----FTVTAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+H GRLLV L GVA RDAADALRG+LF+ID+ ++ P D+PD +YDH+L G+ VQ G
Sbjct 57 EHSGRLLVSLEGVAGRDAADALRGTLFLIDSSEVEPSDDPDEFYDHELEGVPVQLTDGTE 116
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VGVV V+H GELL+V+ D EVL+PFVR IV +V+ + ++ IDPP GLL+
Sbjct 117 VGVVESVLHMPGGELLSVRTPDRREVLIPFVRQIVPTVTRE--LIVIDPPEGLLD 169
>gi|257055029|ref|YP_003132861.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
gi|256584901|gb|ACU96034.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
Length=174
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/179 (51%), Positives = 118/179 (66%), Gaps = 9/179 (5%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M++VVGR+VK HG+ GEV V++RTD P +RFAP T L K +G + +VR
Sbjct 1 MQVVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKM-----RDGRTRPLTVAAVR 55
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
HGGRLLVR V DR AA+ +RG+ +ID D+LPPID+PD +YDH+L GL + G
Sbjct 56 PHGGRLLVRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTV 115
Query 121 VGVVTEVVHTAAGELLAVKRDSD----EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V EVVH+ GELLAV+ + EVLVPFV AIV V +D G + +DPP GLL++
Sbjct 116 VGTVREVVHSPGGELLAVEVEESGRRREVLVPFVAAIVPRVEVDRGRIVLDPPEGLLDV 174
>gi|317508408|ref|ZP_07966078.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC BAA-974]
gi|316253255|gb|EFV12655.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC BAA-974]
Length=179
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/176 (49%), Positives = 118/176 (68%), Gaps = 5/176 (2%)
Query 2 ELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQ 61
ELVVGR+ KSHG+ GEV VEIRTD+P RFAPG+ L + P A+ + + + SVR+
Sbjct 3 ELVVGRIAKSHGLVGEVAVEIRTDEPELRFAPGSALAVRMP---KAKAAGKTLRVVSVRE 59
Query 62 HGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQ-TATGEG 120
H RLLV GV DR AAD+LRG+L V+ ++DLPP ++PD +YDH+LVGL ++ TG
Sbjct 60 HANRLLVSFEGVVDRTAADSLRGALLVVRSEDLPPNEDPDEFYDHELVGLRIEDHGTGAE 119
Query 121 VGVVTEVVHTAAGELLAVK-RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
+G + +V H+A G+ L + +D EVL+PFV AIV +S D + + P GLL L
Sbjct 120 LGEIADVAHSAGGDWLVARVKDGREVLIPFVAAIVVEISRSDRVARVALPEGLLEL 175
>gi|326382874|ref|ZP_08204564.1| 16S rRNA-processing protein RimM [Gordonia neofelifaecis NRRL
B-59395]
gi|326198464|gb|EGD55648.1| 16S rRNA-processing protein RimM [Gordonia neofelifaecis NRRL
B-59395]
Length=175
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/175 (57%), Positives = 122/175 (70%), Gaps = 5/175 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LV+GRVVK+HG+ GEVVV+IRTDDPADRFA GTRLR + + G G Y + + R
Sbjct 1 MDLVIGRVVKTHGIRGEVVVDIRTDDPADRFAVGTRLRGRAARNAG--GGETEYEVTAAR 58
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLL+ LA V R+ AD LRG+LFVIDA D+ D+PD +YDH+L GL V T G
Sbjct 59 MHAGRLLLSLADVRGREEADRLRGTLFVIDAADVDSGDDPDEFYDHELEGLPVSTVDGVE 118
Query 121 VGVVTEVVHTAAGELLAV-KRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VGVV EV+H GELL+V D EVLVPFVR IV +V+ + +EIDPP GL+
Sbjct 119 VGVVKEVLHLPGGELLSVTTTDGREVLVPFVREIVPTVTREG--IEIDPPDGLIE 171
>gi|271963365|ref|YP_003337561.1| 16S rRNA processing protein RimM [Streptosporangium roseum DSM
43021]
gi|270506540|gb|ACZ84818.1| 16S rRNA processing protein RimM [Streptosporangium roseum DSM
43021]
Length=171
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/174 (53%), Positives = 118/174 (68%), Gaps = 8/174 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LV+GR+ + HG+ G+V VE+RTDDP RFAPGT + A P SA VIES R
Sbjct 1 MQLVIGRIGRPHGLRGDVSVEVRTDDPERRFAPGTAV-ATDP------ASAGPLVIESRR 53
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H G LLVR GV DR+ A+ LRG+ VID+ D+PP D+PD +YDHQL+GL V T GE
Sbjct 54 WHSGVLLVRFEGVNDRNRAEDLRGTTLVIDSADIPPSDDPDEFYDHQLIGLAVLTPDGER 113
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VG V++V+H +LL V+R EV VPFV+A+V V LD G++ +D P GLL+
Sbjct 114 VGEVSDVLHHGQ-DLLVVRRGGAEVYVPFVKALVPVVDLDKGVLVVDGPAGLLD 166
>gi|134102488|ref|YP_001108149.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL
2338]
gi|291004121|ref|ZP_06562094.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL
2338]
gi|166226476|sp|A4FME9.1|RIMM_SACEN RecName: Full=Ribosome maturation factor rimM
gi|133915111|emb|CAM05224.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL
2338]
Length=180
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/177 (52%), Positives = 116/177 (66%), Gaps = 5/177 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
+ L VGR+V+ HGV GE+VVE+RTD P RFAPG+ L G GA S ++ + + R
Sbjct 7 LTLAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVL---GMRRRGAHASE-NFTVAAAR 62
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLLVR GV R+AA+ LRG+L + AD+L D+PD ++DHQL GL V GE
Sbjct 63 PHAGRLLVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEE 122
Query 121 VGVVTEVVHTAAGELLAVKRDSD-EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
GVV EVVHT AGELLAV+ D EVLVPFV +V + L+ G + +DPP GL + E
Sbjct 123 AGVVAEVVHTPAGELLAVRTPDDREVLVPFVSEMVPEIDLEAGRIVVDPPEGLFDAE 179
>gi|297559208|ref|YP_003678182.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843656|gb|ADH65676.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=170
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/175 (49%), Positives = 116/175 (67%), Gaps = 7/175 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M LVVGR+ ++HGV G+V V++RTDDPA RFA G+ L A P + G + S R
Sbjct 1 MRLVVGRIGRAHGVRGDVAVDVRTDDPAARFADGSVL-ATDPAEAG------PLTVVSTR 53
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
+H GRLLVR GVADRDAA+ LRG+ ++D++D+PP+++PD ++DH+L+GL T E
Sbjct 54 RHSGRLLVRFEGVADRDAAEGLRGTALLVDSEDIPPLEDPDEFHDHELIGLAAVTTGAEP 113
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V +V+H A L+ D EV VPFV A+V V + G + IDPP GLL+L
Sbjct 114 VGTVADVLHHAQDLLVVTTPDGAEVYVPFVAALVPEVDVAGGRIVIDPPPGLLDL 168
>gi|256379918|ref|YP_003103578.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
gi|255924221|gb|ACU39732.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
Length=172
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/175 (49%), Positives = 111/175 (64%), Gaps = 6/175 (3%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M++VVGRV K+HG+ GE+ V++RTD P RFA G+ L AK +G++ + + R
Sbjct 1 MDVVVGRVAKAHGIRGELAVDVRTDSPEARFALGSVLAAKL-----RDGTSRDLTVAAAR 55
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLLVR V RD A+ LRG+L + D LPP D+PD +YDHQL GL + A G
Sbjct 56 YHSGRLLVRFEEVLTRDVAELLRGTLLLGSTDALPPTDDPDEFYDHQLEGLAAELADGTR 115
Query 121 VGVVTEVVHTAAGELLA-VKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
+G V E+VH GELL V+ D E LVPFVR IV +V + G V +DPP GLL+
Sbjct 116 IGTVKEIVHGPGGELLVLVREDGSEALVPFVRQIVPTVDVAGGRVVVDPPEGLLD 170
>gi|262202022|ref|YP_003273230.1| 16S rRNA processing protein RimM [Gordonia bronchialis DSM 43247]
gi|262085369|gb|ACY21337.1| 16S rRNA processing protein RimM [Gordonia bronchialis DSM 43247]
Length=172
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/175 (55%), Positives = 117/175 (67%), Gaps = 7/175 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVGRV KSHGV GEVVV+IRTDDP RFA GT LR + P G + + + R
Sbjct 1 MDLVVGRVAKSHGVRGEVVVDIRTDDPETRFAVGTVLRGRMPKGAGDR----EFTVTAAR 56
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLL+ LA V DR AAD LRG LF+ID+ + P D+PD +YDH+L G+ V T G
Sbjct 57 HHAGRLLLSLAEVTDRGAADGLRGVLFLIDSSEAQPSDDPDEFYDHELEGVPVSTVDGVS 116
Query 121 VGVVTEVVHTAAGELLAVK-RDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VGVV V+H GELL+V+ D EVLVPFVR IV +V+ + + IDPP GLL+
Sbjct 117 VGVVESVLHLPGGELLSVRTEDRREVLVPFVRQIVPTVTREQ--IVIDPPDGLLD 169
>gi|296268965|ref|YP_003651597.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
gi|296091752|gb|ADG87704.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
Length=171
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/177 (52%), Positives = 116/177 (66%), Gaps = 9/177 (5%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVGR+ + HGV GEV VE+RTD+P RFAPG+ L A P D G +E R
Sbjct 1 MQLVVGRIGRPHGVRGEVTVEVRTDEPEARFAPGSVL-ATDPADAG------PLTVERAR 53
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H G LLV AGV DR+AA+ LRG+L VID+ D+PP +PD ++DH+L+GL V T G+
Sbjct 54 WHRGILLVAFAGVPDRNAAERLRGTLLVIDSADIPPSGDPDEFHDHELLGLAVVTTDGQR 113
Query 121 VGVVTEVVHTAAGELLAVKRDS-DEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE 176
VG V +V+H +LL V+R S +EV VPFV+AIV V G + IDPP GLL L
Sbjct 114 VGEVADVLHHGQ-DLLVVRRPSGEEVYVPFVKAIVPEVDPGAGRLVIDPPPGLLELN 169
>gi|296394373|ref|YP_003659257.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
gi|296181520|gb|ADG98426.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
Length=171
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 116/174 (67%), Gaps = 5/174 (2%)
Query 4 VVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQHG 63
+VGR+ KSHG+TGEV VEIRTDDP RFAPG+ L + P A+ + + + S R+H
Sbjct 1 MVGRIAKSHGLTGEVAVEIRTDDPERRFAPGSTLLLRMP---KAKQADKALHVLSAREHA 57
Query 64 GRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGL-MVQTATGEGVG 122
LLV A V DR AAD+LRG+L V+ +DLPP ++PD +YDH+LVGL +V A G +G
Sbjct 58 SHLLVTFAEVMDRAAADSLRGALLVVRTEDLPPSEDPDEFYDHELVGLRIVDRAGGGELG 117
Query 123 VVTEVVHTAAGELLAVKRD-SDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
V +VVH+A G+ L + + EVLVPFV AIV VSL + ++ P GLL+L
Sbjct 118 EVADVVHSAGGDWLVARVEGGREVLVPFVAAIVVEVSLAEKTAWVELPEGLLDL 171
>gi|300783879|ref|YP_003764170.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei
U32]
gi|299793393|gb|ADJ43768.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei
U32]
gi|340525273|gb|AEK40478.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei
S699]
Length=170
Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/178 (47%), Positives = 111/178 (63%), Gaps = 13/178 (7%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPG----TRLRAKGPFDGGAEGSAVSYVI 56
M++VVGR+ K+HG+ GE+ V++RTD P RF G T+LR +GS I
Sbjct 1 MDVVVGRIAKAHGIRGELAVDVRTDSPEQRFKIGAAVTTKLR---------DGSKRELTI 51
Query 57 ESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTA 116
+ R+H GRLLVR V RD A+ LRG+L + D LPP ++PD +YDH+L GL +
Sbjct 52 AAAREHSGRLLVRFEEVLTRDVAETLRGALLLADTATLPPTEDPDEFYDHELAGLRAELT 111
Query 117 TGEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
G VG V E+VH+ AGELL + + EVLVPFV AIV +V + G V +DPP GLL+
Sbjct 112 DGTVVGKVVEIVHSPAGELLELDVEGREVLVPFVHAIVPTVDIAGGRVVLDPPEGLLD 169
>gi|238063307|ref|ZP_04608016.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
gi|237885118|gb|EEP73946.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
Length=185
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/185 (46%), Positives = 117/185 (64%), Gaps = 10/185 (5%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKG---PFDGGAEGSAVSY--- 54
M L+VGR+ K HG+ GEV VE+RTD+P RFAPG+ L + P A G V +
Sbjct 1 MRLIVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLATEPGAVPPANPASGPGVPFRVP 60
Query 55 ---VIESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGL 111
+ES R H GRLLV G+ +RD A+ALRG+L +D+ D+ P ++P+ ++DHQLVGL
Sbjct 61 AELTVESARWHQGRLLVVFDGILERDVAEALRGTLLGVDSADVAPPEDPEEFHDHQLVGL 120
Query 112 MVQTATGEGVGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPH 170
V T GE +G V ++ H A +LL ++R + L+PFV+AIV V L G + +DPP
Sbjct 121 AVVTPAGEHLGEVVKIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRIVVDPPS 180
Query 171 GLLNL 175
GLL+L
Sbjct 181 GLLDL 185
>gi|330466289|ref|YP_004404032.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
gi|328809260|gb|AEB43432.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
Length=187
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/188 (48%), Positives = 119/188 (64%), Gaps = 14/188 (7%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGP---FDGGAEGSAV----- 52
M L+VGR+ K HG+ GEV VE+RTD+P RFAPG L A P GG E +A
Sbjct 1 MLLIVGRIGKPHGIRGEVTVEVRTDEPDTRFAPGVVL-ATMPGVVPRGGQEPAAEPGERY 59
Query 53 ----SYVIESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQL 108
+ +E+VR H GRLLV GV DRD A+ALRG+L +D+ D+ P ++P+ ++DHQL
Sbjct 60 EVPDALTVEAVRWHQGRLLVAFEGVLDRDVAEALRGTLLTVDSADVAPPEDPEEFHDHQL 119
Query 109 VGLMVQTATGEGVGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEID 167
VGL V T +GE +G V + H A +LL ++R + L+PFV+AIV V L G V +D
Sbjct 120 VGLAVVTPSGERLGEVARIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRVVVD 179
Query 168 PPHGLLNL 175
PP GLL+L
Sbjct 180 PPGGLLDL 187
>gi|302865889|ref|YP_003834526.1| 16S rRNA processing protein RimM [Micromonospora aurantiaca ATCC
27029]
gi|302568748|gb|ADL44950.1| 16S rRNA processing protein RimM [Micromonospora aurantiaca ATCC
27029]
Length=179
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/179 (49%), Positives = 114/179 (64%), Gaps = 4/179 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKG---PFDGGAEGSAVSYVIE 57
M LVVGR+ K HG+ GEV VE+RTD+P RFAPG+ L + P + GA + +E
Sbjct 1 MLLVVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVE 60
Query 58 SVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTAT 117
S R H GRLLV GV +RD A+ALR +L +D+ D+ P ++P+ ++DHQLVGL V T
Sbjct 61 SARWHQGRLLVAFEGVLERDVAEALRNTLLGVDSADVAPPEDPEEFHDHQLVGLTVVTRD 120
Query 118 GEGVGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
GE VG V + H A E+L ++R + LVPFV+AIV V L G V +D P GLL+L
Sbjct 121 GEHVGEVARIDHAPASEMLVLRRPEGRTALVPFVKAIVPEVDLAGGRVVVDLPGGLLDL 179
>gi|315502433|ref|YP_004081320.1| 16S rRNA processing protein rimm [Micromonospora sp. L5]
gi|315409052|gb|ADU07169.1| 16S rRNA processing protein RimM [Micromonospora sp. L5]
Length=179
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/179 (48%), Positives = 114/179 (64%), Gaps = 4/179 (2%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKG---PFDGGAEGSAVSYVIE 57
M LVVGR+ K HG+ GEV VE+RTD+P RFAPG+ L + P + GA + +E
Sbjct 1 MLLVVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVE 60
Query 58 SVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTAT 117
S R H GRLLV GV +RD A+ALR +L +D+ D+ P ++P+ ++DHQLVGL V T
Sbjct 61 SARWHQGRLLVAFEGVLERDVAEALRNTLLGVDSADVAPPEDPEEFHDHQLVGLTVVTRD 120
Query 118 GEGVGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
GE VG V + H A ++L ++R + LVPFV+AIV V L G V +D P GLL+L
Sbjct 121 GEHVGEVARIDHAPASDMLVLRRPEGRTALVPFVKAIVPEVDLAGGRVVVDLPGGLLDL 179
>gi|159036842|ref|YP_001536095.1| 16S rRNA-processing protein RimM [Salinispora arenicola CNS-205]
gi|209573593|sp|A8M679.1|RIMM_SALAI RecName: Full=Ribosome maturation factor rimM
gi|157915677|gb|ABV97104.1| 16S rRNA processing protein RimM [Salinispora arenicola CNS-205]
Length=180
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/179 (49%), Positives = 113/179 (64%), Gaps = 6/179 (3%)
Query 3 LVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLR----AKGPFDGGAEGSAVSYVIES 58
LVVGR+ K HG+ GEV VE+RTD+P RFAPG+ LR A P GA +E+
Sbjct 2 LVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPASPGAYRVPSELTVET 61
Query 59 VRQHGGRLL-VRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTAT 117
R H GRLL V GV DR+ A+ALRG+ +D D+ +P+ ++DHQLVGL V T+
Sbjct 62 ARWHQGRLLLVAFEGVLDRNVAEALRGTFVGVDRADVTAPTDPEEFHDHQLVGLAVVTSA 121
Query 118 GEGVGVVTEVVHTAAGELLAVKRDSD-EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
GE +G + + H A +LL ++R D +VL+PFVRAIV V L G V +DPP GLL+L
Sbjct 122 GERLGEIVRIDHAPAADLLVLRRPGDRDVLIPFVRAIVPEVDLAGGRVVVDPPGGLLDL 180
>gi|302525174|ref|ZP_07277516.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
gi|302434069|gb|EFL05885.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
Length=171
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/178 (49%), Positives = 112/178 (63%), Gaps = 13/178 (7%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPG----TRLRAKGPFDGGAEGSAVSYVI 56
M++VVGR+ K+HG+ GE+ V++RTD P +RFA G T+LR +GS I
Sbjct 1 MDVVVGRIAKAHGIRGELAVDVRTDSPQERFAIGAVVTTKLR---------DGSTRELTI 51
Query 57 ESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTA 116
+ R+H GRLLVR V RD A+ LRG+L + D D LPP +PD +YDH+L GL +
Sbjct 52 AAAREHSGRLLVRFEEVLTRDVAETLRGALLLADTDSLPPTGDPDEFYDHELAGLRAELT 111
Query 117 TGEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
G VG V EVVH+ AGELL + D VLVPFVRAIV V + G V +DPP GLL+
Sbjct 112 DGTVVGKVVEVVHSPAGELLELDHDGRSVLVPFVRAIVPVVDVAGGRVVLDPPEGLLD 169
>gi|72161068|ref|YP_288725.1| 16S rRNA-processing protein RimM [Thermobifida fusca YX]
gi|109893064|sp|Q47S65.1|RIMM_THEFY RecName: Full=Ribosome maturation factor rimM
gi|71914800|gb|AAZ54702.1| 16S rRNA processing protein RimM [Thermobifida fusca YX]
Length=170
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/175 (49%), Positives = 105/175 (60%), Gaps = 7/175 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M LVVGR+ + HGV GEV VE+RTD P +RF G L P D G I + R
Sbjct 1 MRLVVGRIGRPHGVKGEVTVEVRTDSPEERFVVGKALETD-PADVG------PLTITAQR 53
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H RLLVR V DR AA+ LRG V+D+ +LPP+D+PD ++DH+L+GL V+T GE
Sbjct 54 WHKDRLLVRFEEVPDRTAAEQLRGVFLVVDSAELPPLDDPDEFHDHELIGLRVETVDGEA 113
Query 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
VG V +V+H A L+ EVLVPFVR +V V G V IDPP GLL L
Sbjct 114 VGEVVDVLHHAQDMLVVSGEKGSEVLVPFVRELVPDVDTAAGRVVIDPPPGLLEL 168
>gi|145593858|ref|YP_001158155.1| 16S rRNA-processing protein RimM [Salinispora tropica CNB-440]
gi|209573594|sp|A4X4H7.1|RIMM_SALTO RecName: Full=Ribosome maturation factor rimM
gi|145303195|gb|ABP53777.1| 16S rRNA processing protein RimM [Salinispora tropica CNB-440]
Length=180
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/179 (48%), Positives = 114/179 (64%), Gaps = 6/179 (3%)
Query 3 LVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLR----AKGPFDGGAEGSAVSYVIES 58
LVVGR+ K HG+ GEV VE+RTD+P RFAPG+ LR A P GA +E+
Sbjct 2 LVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPAHPGAYRVPGELTVEA 61
Query 59 VRQHGGR-LLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTAT 117
R H GR LLV GV DR+ A+ALRG+L +D D+ P +P+ ++DHQLVGL V T+
Sbjct 62 ARWHQGRVLLVTFEGVLDRNVAEALRGTLVGVDRADVAPPTDPEEFHDHQLVGLAVVTSA 121
Query 118 GEGVGVVTEVVHTAAGELLAVKRDS-DEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
GE +G + + H A +LL ++R +VL+PFV+AIV + L G V +DPP GLL+L
Sbjct 122 GERLGEIARIDHAPAADLLVLRRPGRRDVLIPFVQAIVPEIDLAGGRVVVDPPGGLLDL 180
>gi|269127627|ref|YP_003300997.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
gi|268312585|gb|ACY98959.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
Length=172
Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/174 (47%), Positives = 111/174 (64%), Gaps = 9/174 (5%)
Query 2 ELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQ 61
++VVGR+ + HGV GEV V++RTDDP RFAPG L P G +E R
Sbjct 5 QVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLG-------PLTVERARW 57
Query 62 HGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEGV 121
H GRLL+R GV DR AA+ LRG+ V+D DLPP+++PD ++DH+L+GL T G V
Sbjct 58 HVGRLLLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPV 117
Query 122 GVVTEVVHTAAGELLAVKRDS-DEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
G V +++H A +LL ++R++ E LVPFV A+V V + G + IDPP GLL+
Sbjct 118 GTVRDILHYAQ-DLLVIRRETGGEALVPFVAALVPEVDVAGGRIVIDPPPGLLD 170
>gi|311898560|dbj|BAJ30968.1| putative 16S rRNA-processing protein RimM [Kitasatospora setae
KM-6054]
Length=210
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/175 (49%), Positives = 111/175 (64%), Gaps = 8/175 (4%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
M+LVVG++ ++HG+ G+V VE+RTD+P R PG L D A G IES R
Sbjct 1 MQLVVGKIGRAHGIRGDVSVEVRTDEPELRLGPGAVLLT----DPAAIGP---LTIESGR 53
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLL+R AGV DR AA+ALRG++ + + D D+PD YYDHQL+GL V A G
Sbjct 54 VHSGRLLLRFAGVKDRTAAEALRGTMLIAEIDPEETPDDPDEYYDHQLIGLDVVLADGTP 113
Query 121 VGVVTEVVHTAAGELLAVKR-DSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
VG +TEV+H +LL V+R D EVLVPFV IV + LD+ V + PP GL++
Sbjct 114 VGELTEVIHLPYQDLLTVQRPDGTEVLVPFVEQIVPVIDLDEQRVVLTPPPGLID 168
>gi|19553253|ref|NP_601255.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum
ATCC 13032]
gi|62390889|ref|YP_226291.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum
ATCC 13032]
gi|24418639|sp|Q8NNX5.1|RIMM_CORGL RecName: Full=Ribosome maturation factor rimM
gi|21324822|dbj|BAB99445.1| RimM protein, required for 16S rRNA processing [Corynebacterium
glutamicum ATCC 13032]
gi|41326228|emb|CAF20390.1| RIMM PROTEIN (16S RRNA PROCESSING PROTEIN) [Corynebacterium glutamicum
ATCC 13032]
Length=171
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 109/176 (62%), Gaps = 10/176 (5%)
Query 1 MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60
EL +G+VVKSHG+ GEVVVE+ TDDP RFA G L +G G S I++ R
Sbjct 5 QELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVL------NGKQAGKEHSLTIDAAR 58
Query 61 QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120
H GRLLV+ A V DR AAD+LRG+ F A L D+ D +YDH+L GL V GE
Sbjct 59 MHQGRLLVKFAEVPDRTAADSLRGTRFF--AAPLEDEDDEDGFYDHELEGLRV-IHEGED 115
Query 121 VGVVTEVVHTAAGELLAVKRDS-DEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175
+G VT V+H AGE+L V+ S E L+PFV AIV V L++G I PP GLL+L
Sbjct 116 IGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL 171
Lambda K H
0.318 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 149040830208
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40