BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2911 Length=291 Score E Sequences producing significant alignments: (Bits) Value gi|15842454|ref|NP_337491.1| D-alanyl-D-alanine carboxypeptidase... 587 9e-166 gi|289444466|ref|ZP_06434210.1| D-alanyl-D-alanine carboxypeptid... 585 2e-165 gi|253798001|ref|YP_003031002.1| D-alanyl-D-alanine carboxypepti... 585 3e-165 gi|339295747|gb|AEJ47858.1| D-alanyl-D-alanine carboxypeptidase ... 577 8e-163 gi|82408083|pdb|2BCF|A Chain A, Crystal Structure Of A Evolved P... 518 5e-145 gi|240170567|ref|ZP_04749226.1| putative D-alanyl-D-alanine carb... 500 1e-139 gi|342858238|ref|ZP_08714893.1| D-alanyl-D-alanine carboxypeptid... 493 2e-137 gi|296171457|ref|ZP_06852743.1| serine-type D-Ala-D-Ala carboxyp... 489 2e-136 gi|254821197|ref|ZP_05226198.1| DacB [Mycobacterium intracellula... 484 5e-135 gi|183981810|ref|YP_001850101.1| D-alanyl-D-alanine carboxypepti... 483 2e-134 gi|118617619|ref|YP_905951.1| D-alanyl-D-alanine carboxypeptidas... 480 1e-133 gi|41409077|ref|NP_961913.1| DacB [Mycobacterium avium subsp. pa... 478 6e-133 gi|118465675|ref|YP_882938.1| D-alanyl-D-alanine carboxypeptidas... 477 8e-133 gi|289759031|ref|ZP_06518409.1| LOW QUALITY PROTEIN: D-alanyl-D-... 454 8e-126 gi|108798930|ref|YP_639127.1| Serine-type D-Ala-D-Ala carboxypep... 385 3e-105 gi|120403176|ref|YP_953005.1| Serine-type D-Ala-D-Ala carboxypep... 385 5e-105 gi|126434530|ref|YP_001070221.1| Serine-type D-Ala-D-Ala carboxy... 385 6e-105 gi|118469695|ref|YP_886773.1| D-alanyl-D-alanine carboxypeptidas... 382 4e-104 gi|333991273|ref|YP_004523887.1| D-alanyl-D-alanine carboxypepti... 380 2e-103 gi|315445088|ref|YP_004077967.1| D-alanyl-D-alanine carboxypepti... 377 1e-102 gi|145224758|ref|YP_001135436.1| Serine-type D-Ala-D-Ala carboxy... 377 1e-102 gi|317509103|ref|ZP_07966732.1| D-alanyl-D-alanine carboxypeptid... 346 3e-93 gi|296395141|ref|YP_003660025.1| peptidase S11 D-alanyl-D-alanin... 343 1e-92 gi|169630315|ref|YP_001703964.1| D-alanyl-D-alanine carboxypepti... 341 8e-92 gi|108798929|ref|YP_639126.1| peptidase S11, D-alanyl-D-alanine ... 280 1e-73 gi|126434529|ref|YP_001070220.1| peptidase S11, D-alanyl-D-alani... 280 2e-73 gi|118471560|ref|YP_886772.1| D-alanyl-D-alanine carboxypeptidas... 272 5e-71 gi|145224759|ref|YP_001135437.1| peptidase S11, D-alanyl-D-alani... 257 2e-66 gi|315445089|ref|YP_004077968.1| D-alanyl-D-alanine carboxypepti... 256 2e-66 gi|120403175|ref|YP_953004.1| peptidase S11, D-alanyl-D-alanine ... 256 2e-66 gi|317508309|ref|ZP_07965989.1| D-alanyl-D-alanine carboxypeptid... 254 1e-65 gi|317508066|ref|ZP_07965751.1| D-alanyl-D-alanine carboxypeptid... 243 3e-62 gi|343926643|ref|ZP_08766141.1| D-alanyl-D-alanine carboxypeptid... 240 2e-61 gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxyp... 237 1e-60 gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypepti... 236 2e-60 gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB... 235 5e-60 gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxyp... 234 2e-59 gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypepti... 233 3e-59 gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypepti... 231 8e-59 gi|333921635|ref|YP_004495216.1| serine-type D-Ala-D-Ala carboxy... 231 9e-59 gi|333991792|ref|YP_004524406.1| penicillin-binding protein DacC... 230 2e-58 gi|296394587|ref|YP_003659471.1| peptidase S11 D-alanyl-D-alanin... 230 2e-58 gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidas... 230 2e-58 gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypepti... 225 8e-57 gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypep... 224 2e-56 gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC ... 223 3e-56 gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine... 223 3e-56 gi|296394426|ref|YP_003659310.1| peptidase S11 D-alanyl-D-alanin... 222 6e-56 gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxy... 222 6e-56 gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypep... 221 9e-56 >gi|15842454|ref|NP_337491.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis CDC1551] gi|31794087|ref|NP_856580.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis AF2122/97] gi|57117035|ref|YP_177914.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis H37Rv] 64 more sequence titles Length=291 Score = 587 bits (1512), Expect = 9e-166, Method: Compositional matrix adjust. Identities = 291/291 (100%), Positives = 291/291 (100%), Gaps = 0/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD Sbjct 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL Sbjct 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL Sbjct 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT Sbjct 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL Sbjct 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 >gi|289444466|ref|ZP_06434210.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis T46] gi|289571098|ref|ZP_06451325.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis T17] gi|289417385|gb|EFD14625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis T46] gi|289544852|gb|EFD48500.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis T17] Length=291 Score = 585 bits (1508), Expect = 2e-165, Method: Compositional matrix adjust. Identities = 290/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD Sbjct 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL Sbjct 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL Sbjct 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT Sbjct 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQ SVGSL Sbjct 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQTSVGSL 291 >gi|253798001|ref|YP_003031002.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis KZN 1435] gi|289553300|ref|ZP_06442510.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis KZN 605] gi|297635529|ref|ZP_06953309.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis KZN 4207] 6 more sequence titles Length=291 Score = 585 bits (1507), Expect = 3e-165, Method: Compositional matrix adjust. Identities = 290/291 (99%), Positives = 291/291 (100%), Gaps = 0/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 M+KLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD Sbjct 1 MQKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL Sbjct 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL Sbjct 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT Sbjct 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL Sbjct 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 >gi|339295747|gb|AEJ47858.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis CCDC5079] gi|339299363|gb|AEJ51473.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis CCDC5180] Length=287 Score = 577 bits (1487), Expect = 8e-163, Method: Compositional matrix adjust. Identities = 287/287 (100%), Positives = 287/287 (100%), Gaps = 0/287 (0%) Query 5 MTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVA 64 MTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVA Sbjct 1 MTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVA 60 Query 65 HPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVS 124 HPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVS Sbjct 61 HPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVS 120 Query 125 GNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIF 184 GNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIF Sbjct 121 GNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIF 180 Query 185 RAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGA 244 RAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGA Sbjct 181 RAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGA 240 Query 245 AARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 AARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL Sbjct 241 AARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 287 >gi|82408083|pdb|2BCF|A Chain A, Crystal Structure Of A Evolved Putative Penicillin-Binding Protein Homolog, Rv2911, From Mycobacterium Tuberculosis. Length=276 Score = 518 bits (1333), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 258/267 (97%), Positives = 259/267 (98%), Gaps = 0/267 (0%) Query 25 ADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD 84 ADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD Sbjct 2 ADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD 61 Query 85 LNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVA 144 LNSTVVADVADTQAECNCVGVKPGRSYT RQLLDGLLLVSGNDAANTLAH LGGQDVTVA Sbjct 62 LNSTVVADVADTQAECNCVGVKPGRSYTVRQLLDGLLLVSGNDAANTLAHXLGGQDVTVA 121 Query 145 KMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMF 204 K NAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAA ANPVFAQI AEPSA F Sbjct 122 KXNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAXANPVFAQIIAEPSAXF 181 Query 205 PSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEG 264 PSD+GEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIA YGLVKEG Sbjct 182 PSDDGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAXXYGLVKEG 241 Query 265 GPTYWDQAATLFDWGFALNPQASVGSL 291 GPTYWDQAATLFDWGFALNPQASVGSL Sbjct 242 GPTYWDQAATLFDWGFALNPQASVGSL 268 >gi|240170567|ref|ZP_04749226.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium kansasii ATCC 12478] Length=294 Score = 500 bits (1287), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 245/267 (92%), Positives = 254/267 (96%), Gaps = 0/267 (0%) Query 25 ADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD 84 AD DVQPAGSVPIPDGPAQTWIVADLDSGQVLA RDQNVAHPPASTIKVLLALVALDELD Sbjct 28 ADTDVQPAGSVPIPDGPAQTWIVADLDSGQVLAERDQNVAHPPASTIKVLLALVALDELD 87 Query 85 LNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVA 144 LNSTVVADVADTQ ECNCVG+KPGR+YTARQLLD LLLVSGNDAANTLA MLGGQDV VA Sbjct 88 LNSTVVADVADTQVECNCVGIKPGRTYTARQLLDALLLVSGNDAANTLAQMLGGQDVAVA 147 Query 145 KMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMF 204 KMNAKAA LGA STHA TPSGLDGPGGSGASTAHDL VIFRAAMANPVFA+ITAEPSAMF Sbjct 148 KMNAKAAALGAGSTHAATPSGLDGPGGSGASTAHDLAVIFRAAMANPVFARITAEPSAMF 207 Query 205 PSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEG 264 P DNG+Q IVNQDELLQRYPGAIGGKTG+TNAARKTFVGAAAR GRRLVIAMMYG+VKEG Sbjct 208 PGDNGDQPIVNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARNGRRLVIAMMYGMVKEG 267 Query 265 GPTYWDQAATLFDWGFALNPQASVGSL 291 GPTYWDQAA+LFDWGFAL+PQAS+GSL Sbjct 268 GPTYWDQAASLFDWGFALSPQASIGSL 294 >gi|342858238|ref|ZP_08714893.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium colombiense CECT 3035] gi|342133942|gb|EGT87122.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium colombiense CECT 3035] Length=297 Score = 493 bits (1268), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 249/298 (84%), Positives = 263/298 (89%), Gaps = 8/298 (2%) Query 1 MRKL------MTATA-ALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSG 53 MRKL M AT AL C TV+ AWAD + QP GS+PIPDGPAQTWIVADLDSG Sbjct 1 MRKLTALGFRMAATLFALGTCTATVAMSTAWAD-NSQPVGSLPIPDGPAQTWIVADLDSG 59 Query 54 QVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTA 113 QVLAGRDQNV HPPASTIK LLA V LD + L+STVVADVADTQ ECNCVGVK GR+YTA Sbjct 60 QVLAGRDQNVPHPPASTIKTLLAQVVLDSVSLDSTVVADVADTQVECNCVGVKAGRTYTA 119 Query 114 RQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSG 173 RQLLDGLLLVSGNDAANTLAHMLGG DVTVAKMNAKAA+LGAT+THA TPSGLDGPGGSG Sbjct 120 RQLLDGLLLVSGNDAANTLAHMLGGPDVTVAKMNAKAASLGATNTHAATPSGLDGPGGSG 179 Query 174 ASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGY 233 ASTAHDL VIFRAAMANPVFAQITAEPSAMFP DNG+ I NQDELLQRYPGAIGGKTG+ Sbjct 180 ASTAHDLAVIFRAAMANPVFAQITAEPSAMFPGDNGDHPITNQDELLQRYPGAIGGKTGF 239 Query 234 TNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 TNAARKTFVGAAARGGRRLVIAMMYGL+KEGGPTYWDQAATLFDWGFA +PQ+S+GSL Sbjct 240 TNAARKTFVGAAARGGRRLVIAMMYGLIKEGGPTYWDQAATLFDWGFAQSPQSSIGSL 297 >gi|296171457|ref|ZP_06852743.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894143|gb|EFG73903.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=294 Score = 489 bits (1260), Expect = 2e-136, Method: Compositional matrix adjust. Identities = 247/295 (84%), Positives = 265/295 (90%), Gaps = 5/295 (1%) Query 1 MRKLM---TATAALCACAVT-VSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVL 56 MRK+M AAL V +A A+ AD+ +QP GSVPIPDGPAQTWIVADLDSGQVL Sbjct 1 MRKVMALRVGVAALLTVGVCGATAPASRADS-MQPVGSVPIPDGPAQTWIVADLDSGQVL 59 Query 57 AGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQL 116 AGRDQNVAHPPASTIKVLLALV LD++ L+STVVAD ADTQ ECNCVGVKPGR YTARQL Sbjct 60 AGRDQNVAHPPASTIKVLLALVTLDQVSLDSTVVADAADTQVECNCVGVKPGRLYTARQL 119 Query 117 LDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGAST 176 LDGLLLVSGNDAANTLAHMLGG + TVAKMNAKAA+LGATSTHA TPSGLDGPGGSG+ST Sbjct 120 LDGLLLVSGNDAANTLAHMLGGPEATVAKMNAKAASLGATSTHAATPSGLDGPGGSGSST 179 Query 177 AHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 236 AHDL VIFRAAMANPVFA ITAEPSAMFP D+G+QLI NQDELLQRYPGAIGGKTG+T+A Sbjct 180 AHDLAVIFRAAMANPVFAHITAEPSAMFPGDHGDQLITNQDELLQRYPGAIGGKTGFTDA 239 Query 237 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 ARKTFVGAAARGGRRLVIAMMYGLVK GGP+YWDQAATLFDWGFALNPQ+S+GSL Sbjct 240 ARKTFVGAAARGGRRLVIAMMYGLVKAGGPSYWDQAATLFDWGFALNPQSSIGSL 294 >gi|254821197|ref|ZP_05226198.1| DacB [Mycobacterium intracellulare ATCC 13950] Length=295 Score = 484 bits (1247), Expect = 5e-135, Method: Compositional matrix adjust. Identities = 233/262 (89%), Positives = 248/262 (95%), Gaps = 0/262 (0%) Query 30 QPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTV 89 QP GS+PIPDGPAQTWI+ADLDSGQVLAGRDQNVAHPPASTIK LLA V LD + L+STV Sbjct 34 QPIGSIPIPDGPAQTWIIADLDSGQVLAGRDQNVAHPPASTIKTLLAQVVLDSVSLDSTV 93 Query 90 VADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAK 149 VADVADTQ ECNCVG+KPGR+YTARQLLDGLLLVSGNDAANTLAHMLGG DVTVAKMNAK Sbjct 94 VADVADTQVECNCVGIKPGRTYTARQLLDGLLLVSGNDAANTLAHMLGGPDVTVAKMNAK 153 Query 150 AATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNG 209 AA+LGAT+THA TPSGLDGPGGSG+STAHDL VIFRAAMANPVFAQITAEPSAMFP DNG Sbjct 154 AASLGATNTHAATPSGLDGPGGSGSSTAHDLAVIFRAAMANPVFAQITAEPSAMFPGDNG 213 Query 210 EQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYW 269 ++LI NQDELLQRYPGAIGGKTG+TNAARKTFVGAAARGGRRLVIAMMYGLVKEGGP+YW Sbjct 214 DRLITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPSYW 273 Query 270 DQAATLFDWGFALNPQASVGSL 291 DQAATLFDWGFA +PQA +GSL Sbjct 274 DQAATLFDWGFAQSPQAGIGSL 295 >gi|183981810|ref|YP_001850101.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M] gi|183175136|gb|ACC40246.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M] Length=290 Score = 483 bits (1243), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 244/291 (84%), Positives = 256/291 (88%), Gaps = 1/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 MRK+M AA A T+S A AD ++QPAGSVPIPDGPAQTWIVADLD+GQVLAGRD Sbjct 1 MRKVMAVAAA-LLTAATISGATASADTEMQPAGSVPIPDGPAQTWIVADLDTGQVLAGRD 59 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 QNV HPPASTIKVLLALVALDELDLNSTVVAD ADT ECNCVGVK G +YTARQLLDGL Sbjct 60 QNVTHPPASTIKVLLALVALDELDLNSTVVADEADTHVECNCVGVKAGHTYTARQLLDGL 119 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLA MLGGQD VAKMNAKAA LGA +THA TPSGLDGPGGSG STAHDL Sbjct 120 LLVSGNDAANTLAQMLGGQDAAVAKMNAKAAALGAMNTHAATPSGLDGPGGSGWSTAHDL 179 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VIFR AMANPVFA ITAEPSAMFP ++GE IVNQDELLQRYPGAIGGKTGYTNAARKT Sbjct 180 AVIFRTAMANPVFAHITAEPSAMFPGEDGEHPIVNQDELLQRYPGAIGGKTGYTNAARKT 239 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAAAR GRRLVIAMMYGLVKEGGPTYWDQA +LFDWGFALNPQ+ +GSL Sbjct 240 FVGAAARNGRRLVIAMMYGLVKEGGPTYWDQAGSLFDWGFALNPQSGIGSL 290 >gi|118617619|ref|YP_905951.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans Agy99] gi|118569729|gb|ABL04480.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans Agy99] Length=290 Score = 480 bits (1236), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 241/291 (83%), Positives = 255/291 (88%), Gaps = 1/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 MRK+M A A T+S A AD ++QPAGSVPIPDGPAQTWIVADLD+GQVLAGRD Sbjct 1 MRKVMAVAAV-LLTAATISGATASADTEMQPAGSVPIPDGPAQTWIVADLDTGQVLAGRD 59 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 QNV HPPASTIKVLLALVALDEL+LNSTVVAD ADT ECNCVGVK G +YTARQLLDGL Sbjct 60 QNVTHPPASTIKVLLALVALDELNLNSTVVADEADTHVECNCVGVKAGHTYTARQLLDGL 119 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLA +LGGQD VAKMNAKAA LGA +THA TPSGLDGPGGSG STAHDL Sbjct 120 LLVSGNDAANTLAQLLGGQDAAVAKMNAKAAALGAMNTHAATPSGLDGPGGSGWSTAHDL 179 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VIFR AMANPVFA ITAEPSAMFP ++GE IVNQDELLQRYPGAIGGKTGYTNAARKT Sbjct 180 AVIFRTAMANPVFAHITAEPSAMFPGEDGEHPIVNQDELLQRYPGAIGGKTGYTNAARKT 239 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAAAR GRRLVIAMMYGLVKEGGPTYWDQA +LFDWGFALNPQ+ +GSL Sbjct 240 FVGAAARNGRRLVIAMMYGLVKEGGPTYWDQAGSLFDWGFALNPQSGIGSL 290 >gi|41409077|ref|NP_961913.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397436|gb|AAS05296.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10] Length=289 Score = 478 bits (1229), Expect = 6e-133, Method: Compositional matrix adjust. Identities = 243/292 (84%), Positives = 259/292 (89%), Gaps = 4/292 (1%) Query 1 MRKLMTATAALCACAVTVSAGAAWADAD-VQPAGSVPIPDGPAQTWIVADLDSGQVLAGR 59 MRKL TA AAL + GA A AD QPAGS+PIPDGPAQTWI+ADLDSGQVLAGR Sbjct 1 MRKLWTAAAALLLVG---ACGAPTAAADSTQPAGSIPIPDGPAQTWIIADLDSGQVLAGR 57 Query 60 DQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDG 119 D NVAHPPASTIK LLA V LDE+ L++TVVAD ADTQ ECNCVG+KPGRSYTARQLLD Sbjct 58 DPNVAHPPASTIKTLLAQVVLDEVSLDATVVADAADTQVECNCVGIKPGRSYTARQLLDA 117 Query 120 LLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHD 179 LLLVSGNDAANTLAHMLGG + TVAKMNAKAA LGAT+THA+TPSGLDGP GSG+STAHD Sbjct 118 LLLVSGNDAANTLAHMLGGPEATVAKMNAKAAALGATNTHASTPSGLDGPNGSGSSTAHD 177 Query 180 LVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARK 239 L VIFRAAMANPVFAQITAEPSAMFP DNG Q I NQDELLQRYPGAIGGKTG+TNAARK Sbjct 178 LAVIFRAAMANPVFAQITAEPSAMFPGDNGLQPITNQDELLQRYPGAIGGKTGFTNAARK 237 Query 240 TFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 TFVGAAARGGRRLVIAMMYGL+KEGGP+YWDQAATLFDWGFA +PQAS+GSL Sbjct 238 TFVGAAARGGRRLVIAMMYGLIKEGGPSYWDQAATLFDWGFAQSPQASIGSL 289 >gi|118465675|ref|YP_882938.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104] gi|254776211|ref|ZP_05217727.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp. avium ATCC 25291] gi|118166962|gb|ABK67859.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104] gi|336459030|gb|EGO37980.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp. paratuberculosis S397] Length=298 Score = 477 bits (1228), Expect = 8e-133, Method: Compositional matrix adjust. Identities = 243/292 (84%), Positives = 259/292 (89%), Gaps = 4/292 (1%) Query 1 MRKLMTATAALCACAVTVSAGAAWADAD-VQPAGSVPIPDGPAQTWIVADLDSGQVLAGR 59 MRKL TA AAL + GA A AD QPAGS+PIPDGPAQTWI+ADLDSGQVLAGR Sbjct 10 MRKLWTAAAALLLVG---ACGAPTAAADSTQPAGSIPIPDGPAQTWIIADLDSGQVLAGR 66 Query 60 DQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDG 119 D NVAHPPASTIK LLA V LDE+ L++TVVAD ADTQ ECNCVG+KPGRSYTARQLLD Sbjct 67 DPNVAHPPASTIKTLLAQVVLDEVSLDATVVADAADTQVECNCVGIKPGRSYTARQLLDA 126 Query 120 LLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHD 179 LLLVSGNDAANTLAHMLGG + TVAKMNAKAA LGAT+THA+TPSGLDGP GSG+STAHD Sbjct 127 LLLVSGNDAANTLAHMLGGPEATVAKMNAKAAALGATNTHASTPSGLDGPNGSGSSTAHD 186 Query 180 LVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARK 239 L VIFRAAMANPVFAQITAEPSAMFP DNG Q I NQDELLQRYPGAIGGKTG+TNAARK Sbjct 187 LAVIFRAAMANPVFAQITAEPSAMFPGDNGLQPITNQDELLQRYPGAIGGKTGFTNAARK 246 Query 240 TFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 TFVGAAARGGRRLVIAMMYGL+KEGGP+YWDQAATLFDWGFA +PQAS+GSL Sbjct 247 TFVGAAARGGRRLVIAMMYGLIKEGGPSYWDQAATLFDWGFAQSPQASIGSL 298 >gi|289759031|ref|ZP_06518409.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis T85] gi|289714595|gb|EFD78607.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium tuberculosis T85] Length=240 Score = 454 bits (1168), Expect = 8e-126, Method: Compositional matrix adjust. Identities = 225/225 (100%), Positives = 225/225 (100%), Gaps = 0/225 (0%) Query 67 PASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGN 126 PASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGN Sbjct 16 PASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGN 75 Query 127 DAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA 186 DAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA Sbjct 76 DAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA 135 Query 187 AMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAA 246 AMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAA Sbjct 136 AMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAA 195 Query 247 RGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 RGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL Sbjct 196 RGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 240 >gi|108798930|ref|YP_639127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119868045|ref|YP_937997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] gi|108769349|gb|ABG08071.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119694134|gb|ABL91207.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] Length=291 Score = 385 bits (990), Expect = 3e-105, Method: Compositional matrix adjust. Identities = 198/291 (69%), Positives = 229/291 (79%), Gaps = 0/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 M +L++ A + A V+A A AD D+QP GSVPIP GPA+ WIVAD+D+GQVLAGR+ Sbjct 1 MGRLVSLFAIVLAALGVVAAPVAAADIDIQPVGSVPIPAGPAEAWIVADMDTGQVLAGRN 60 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 + PASTIK LLA V LDE+ L++T+ A+ ADT+ ECNC GV PG YTARQLL+ L Sbjct 61 DTTRYAPASTIKTLLAQVVLDEVPLDTTIAAEEADTRVECNCAGVAPGHVYTARQLLEAL 120 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLA MLGG D VAKMNAKAA LGA T+ TPSGLDGPG STAHDL Sbjct 121 LLVSGNDAANTLARMLGGMDSAVAKMNAKAAQLGAHGTNVVTPSGLDGPGMPFWSTAHDL 180 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VIFRAAMANPVFAQITA PS +FP+ GE ++VNQ+ELL RYPGAIGGKTG+T+ ARKT Sbjct 181 AVIFRAAMANPVFAQITAMPSTVFPTKAGEAVLVNQNELLHRYPGAIGGKTGFTDIARKT 240 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAA R GRRLV+ +M+GLVKEGGPTYWDQAA L DWGF L+ ASVG+L Sbjct 241 FVGAAQRDGRRLVVVLMHGLVKEGGPTYWDQAAGLLDWGFGLDRGASVGTL 291 >gi|120403176|ref|YP_953005.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] gi|119955994|gb|ABM12999.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] Length=294 Score = 385 bits (988), Expect = 5e-105, Method: Compositional matrix adjust. Identities = 196/294 (67%), Positives = 228/294 (78%), Gaps = 3/294 (1%) Query 1 MRKLMTATAALCACAVTVS---AGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLA 57 M +L+ A+ +VS A A A VQPAGS+PIPDGPAQ WIVAD+D+G VLA Sbjct 1 MTRLLACLGAVLCLVGSVSVPHAAAVPATGIVQPAGSMPIPDGPAQAWIVADMDTGAVLA 60 Query 58 GRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLL 117 RD++ PASTIKVLLA+V LDEL L++T+VA+ ADT ECNC GV PGR+YT RQLL Sbjct 61 ARDEHGHFAPASTIKVLLAMVVLDELPLDATIVANEADTLVECNCAGVTPGRTYTTRQLL 120 Query 118 DGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTA 177 + LLLVSGNDAANTLA MLGG+DV V KMNAKAATLGA T+A +PSG+DGPG ST Sbjct 121 EALLLVSGNDAANTLATMLGGRDVAVMKMNAKAATLGAYGTNAGSPSGIDGPGIDIWSTP 180 Query 178 HDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAA 237 DL VIFRAAMA+PVFAQI A+P+A+FP+ G+ ++VNQDELL RYPG GGKTGYT+ A Sbjct 181 RDLAVIFRAAMADPVFAQIVAQPTAVFPAKTGDVVLVNQDELLHRYPGTFGGKTGYTDLA 240 Query 238 RKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 RKTFVG AAR GR LV+A+MYGLVKEGGPTYWDQAA L DWGFAL P + V L Sbjct 241 RKTFVGGAARNGRHLVVALMYGLVKEGGPTYWDQAAALLDWGFALGPNSGVSRL 294 >gi|126434530|ref|YP_001070221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] gi|126234330|gb|ABN97730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] Length=291 Score = 385 bits (988), Expect = 6e-105, Method: Compositional matrix adjust. Identities = 197/291 (68%), Positives = 228/291 (79%), Gaps = 0/291 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRD 60 M +L++ A + A V+A A AD D+QP GSVPIP GPA+ WIVAD+D+GQVLAGR+ Sbjct 1 MGRLVSLFAIVLAALGVVAAPVAAADIDIQPVGSVPIPAGPAEAWIVADMDTGQVLAGRN 60 Query 61 QNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGL 120 + PASTIK LLA V LDE+ L++T+ A+ ADT+ ECNC GV PG YTARQLL+ L Sbjct 61 DTTRYAPASTIKTLLAQVVLDEVPLDTTIAAEEADTRVECNCAGVAPGHVYTARQLLEAL 120 Query 121 LLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDL 180 LLVSGNDAANTLA MLGG D VAKMNAKAA LGA T+ TPSGLDGPG STAHDL Sbjct 121 LLVSGNDAANTLARMLGGMDSAVAKMNAKAAQLGAHGTNVVTPSGLDGPGMPFWSTAHDL 180 Query 181 VVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKT 240 VIFRAAMANPVF QITA PS +FP+ GE ++VNQ+ELL RYPGAIGGKTG+T+ ARKT Sbjct 181 AVIFRAAMANPVFVQITAMPSTVFPTKAGEAVLVNQNELLHRYPGAIGGKTGFTDIARKT 240 Query 241 FVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 FVGAA R GRRLV+ +M+GLVKEGGPTYWDQAA L DWGF L+ ASVG+L Sbjct 241 FVGAAQRDGRRLVVVLMHGLVKEGGPTYWDQAAGLLDWGFGLDRGASVGTL 291 >gi|118469695|ref|YP_886773.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118170982|gb|ABK71878.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length=296 Score = 382 bits (980), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 188/269 (70%), Positives = 217/269 (81%), Gaps = 0/269 (0%) Query 23 AWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDE 82 A ADAD+Q GSV P+GPA+TW+VAD+D+GQ+LAGR + V H PASTIK LLALV LDE Sbjct 28 ARADADIQQVGSVAPPEGPAETWVVADMDTGQILAGRGEYVRHAPASTIKTLLALVVLDE 87 Query 83 LDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVT 142 + L+ST+VAD DT ECNC GV PGR+YTARQLL+ LL SGNDAANTLA MLGG + Sbjct 88 VPLDSTIVADETDTDVECNCAGVAPGRTYTARQLLEAALLASGNDAANTLARMLGGPEAA 147 Query 143 VAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSA 202 VAKMNAKAA LGA T+ TPSGLD PG ST HDL VIFRAAMA+PVFAQITA PS Sbjct 148 VAKMNAKAAQLGARDTNVVTPSGLDAPGMPFWSTPHDLAVIFRAAMADPVFAQITAMPST 207 Query 203 MFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVK 262 +FP+ G++++VNQ+ELL RYPG +GGKTG+T+ ARKTFV AA R GRRLVIAMMYGLVK Sbjct 208 VFPAKTGDRVLVNQNELLHRYPGTLGGKTGFTDIARKTFVAAAQRDGRRLVIAMMYGLVK 267 Query 263 EGGPTYWDQAATLFDWGFALNPQASVGSL 291 EGGPTYWDQAA L DWGFA + AS+G+L Sbjct 268 EGGPTYWDQAAGLLDWGFAQDRSASIGAL 296 >gi|333991273|ref|YP_004523887.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium sp. JDM601] gi|333487241|gb|AEF36633.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium sp. JDM601] Length=292 Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 206/292 (71%), Positives = 239/292 (82%), Gaps = 1/292 (0%) Query 1 MRKLMTATAALCACAVTVSAGAAWADADV-QPAGSVPIPDGPAQTWIVADLDSGQVLAGR 59 MRK++ A ++ AA A ADV QP GS PIP GPA W++ADLDSG+VLA + Sbjct 1 MRKILACWAMAATVLALLATTAAPASADVAQPLGSAPIPAGPAPNWLIADLDSGEVLAEQ 60 Query 60 DQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDG 119 + A PPASTIKVLLALVALDEL+L+ TVVA ADT ECNC+G+KPGRSYTARQLL+G Sbjct 61 NGYAATPPASTIKVLLALVALDELNLDDTVVATPADTAVECNCLGIKPGRSYTARQLLEG 120 Query 120 LLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHD 179 LLLVSGNDAAN LA MLGG + VAKMNAKAA +GA +THATTPSGLDGPGGSGA+T HD Sbjct 121 LLLVSGNDAANALADMLGGPEAAVAKMNAKAAAVGAAATHATTPSGLDGPGGSGATTPHD 180 Query 180 LVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARK 239 L VIFRAAMANPVFA+ITA+ +AMFP+++GE+ IVN +ELL RYPGA GGKTG+T+AARK Sbjct 181 LAVIFRAAMANPVFAEITAQHAAMFPTESGERPIVNMNELLTRYPGAFGGKTGFTDAARK 240 Query 240 TFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 T+VGAAAR GRRLV+AMMYGL++EGGPTYWDQA L DWGFA P + VGSL Sbjct 241 TYVGAAARDGRRLVVAMMYGLIREGGPTYWDQAGALLDWGFAQGPMSGVGSL 292 >gi|315445088|ref|YP_004077967.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] gi|315263391|gb|ADU00133.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] Length=297 Score = 377 bits (969), Expect = 1e-102, Method: Compositional matrix adjust. Identities = 191/295 (65%), Positives = 226/295 (77%), Gaps = 5/295 (1%) Query 2 RKLMTATAALC-----ACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVL 56 R L + AALC + V+ +A A VQPAGSVP+PDGPAQ W++AD+D+G VL Sbjct 3 RLLASLGAALCLILAGSGVVSPTASAVPVTGIVQPAGSVPVPDGPAQAWVLADMDTGAVL 62 Query 57 AGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQL 116 A R +N PASTIK+LLA+V LDEL L++TVVA+ ADT+ ECNC GV PG +YT RQL Sbjct 63 AARQENGRFAPASTIKILLAMVVLDELPLDATVVANEADTRVECNCAGVAPGTTYTTRQL 122 Query 117 LDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGAST 176 L+GLLLVSGNDAANTLA MLGG+D VAKMNAKAA LGA T A +PSG+DGPG ST Sbjct 123 LEGLLLVSGNDAANTLATMLGGRDAAVAKMNAKAAGLGAHGTRAGSPSGIDGPGIDIWST 182 Query 177 AHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 236 DL V+FRAAMA PVFAQITA+P+A+FP+ +G+ ++VNQDE+L RYPG GGKTGYT+ Sbjct 183 PRDLAVLFRAAMAYPVFAQITAQPTAVFPTKSGDVVLVNQDEMLHRYPGTFGGKTGYTDL 242 Query 237 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 ARKTFV A+R GR LV+AMMYGLV EGGPTYWDQA+ L DWGFAL P A V L Sbjct 243 ARKTFVAGASRNGRHLVVAMMYGLVTEGGPTYWDQASALLDWGFALGPNAGVSRL 297 >gi|145224758|ref|YP_001135436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] gi|145217244|gb|ABP46648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] Length=313 Score = 377 bits (968), Expect = 1e-102, Method: Compositional matrix adjust. Identities = 191/295 (65%), Positives = 226/295 (77%), Gaps = 5/295 (1%) Query 2 RKLMTATAALC-----ACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVL 56 R L + AALC + V+ +A A VQPAGSVP+PDGPAQ W++AD+D+G VL Sbjct 19 RLLASLGAALCLILAGSGVVSPTASAVPVTGIVQPAGSVPVPDGPAQAWVLADMDTGAVL 78 Query 57 AGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQL 116 A R +N PASTIK+LLA+V LDEL L++TVVA+ ADT+ ECNC GV PG +YT RQL Sbjct 79 AARQENGRFAPASTIKILLAMVVLDELPLDATVVANEADTRVECNCAGVAPGTTYTTRQL 138 Query 117 LDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGAST 176 L+GLLLVSGNDAANTLA MLGG+D VAKMNAKAA LGA T A +PSG+DGPG ST Sbjct 139 LEGLLLVSGNDAANTLATMLGGRDAAVAKMNAKAAGLGAHGTRAGSPSGIDGPGIDIWST 198 Query 177 AHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 236 DL V+FRAAMA PVFAQITA+P+A+FP+ +G+ ++VNQDE+L RYPG GGKTGYT+ Sbjct 199 PRDLAVLFRAAMAYPVFAQITAQPTAVFPTKSGDVVLVNQDEMLHRYPGTFGGKTGYTDL 258 Query 237 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 ARKTFV A+R GR LV+AMMYGLV EGGPTYWDQA+ L DWGFAL P A V L Sbjct 259 ARKTFVAGASRNGRHLVVAMMYGLVTEGGPTYWDQASALLDWGFALGPNAGVSRL 313 >gi|317509103|ref|ZP_07966732.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] gi|316252632|gb|EFV12073.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] Length=303 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/265 (66%), Positives = 195/265 (74%), Gaps = 1/265 (0%) Query 27 ADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLN 86 A P GS +PDGPA W+VAD+DSG++LA ++ HPPASTIK LLAL +DE L+ Sbjct 40 APCSPVGSPDLPDGPADAWLVADMDSGEILAAKNPYAYHPPASTIKTLLALTVIDEAPLD 99 Query 87 STVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKM 146 S V A D AEC+CVG+KPG YT RQLLD LLLVSGNDAANTLA LGG D VAKM Sbjct 100 SAVTA-TKDDLAECSCVGIKPGHDYTIRQLLDALLLVSGNDAANTLAESLGGFDSAVAKM 158 Query 147 NAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPS 206 NAKA +GAT TH +PSGLD PG +T HDL VIFR A+ P+FA+ITAEPSAMFP Sbjct 159 NAKAQEIGATDTHTGSPSGLDWPGMEMHTTPHDLAVIFREALNRPLFAEITAEPSAMFPG 218 Query 207 DNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGP 266 D GE I NQDELL YPGA+GGKTG+TNAA+KTFVGAA R GRRLV+AMMYGL G P Sbjct 219 DGGENEIHNQDELLSLYPGALGGKTGFTNAAKKTFVGAAERDGRRLVVAMMYGLNTPGNP 278 Query 267 TYWDQAATLFDWGFALNPQASVGSL 291 TYWDQA L DWGFAL SVG L Sbjct 279 TYWDQAQALLDWGFALPEGESVGQL 303 >gi|296395141|ref|YP_003660025.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] gi|296182288|gb|ADG99194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] Length=304 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/265 (65%), Positives = 203/265 (77%), Gaps = 1/265 (0%) Query 27 ADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLN 86 A PAGS +PDGPA+ W++AD+DSG++LA ++ H PASTIK LLAL +DE+ L+ Sbjct 41 APCSPAGSPEVPDGPAEAWLLADMDSGEILAAKNPYAYHAPASTIKTLLALTVIDEVPLD 100 Query 87 STVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKM 146 STV+A+ +D AEC+CVGV GR Y+ RQLLDGLLLVSGNDAANTLA LGG D VAKM Sbjct 101 STVLANRSDL-AECSCVGVTTGREYSVRQLLDGLLLVSGNDAANTLAEALGGFDAAVAKM 159 Query 147 NAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPS 206 N KAA +GA+ T +PSGLD PG +T DL VIFR A++ PVFA+ITAEP+A+FP Sbjct 160 NEKAAEIGASDTRTGSPSGLDWPGMEMHTTPRDLAVIFREALSRPVFAEITAEPTALFPG 219 Query 207 DNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGP 266 D+GE I NQDELL YPGA+GGKTG+TNAARKTFVGAA R GRRLV++MM+GL GGP Sbjct 220 DSGEDEIRNQDELLTLYPGALGGKTGFTNAARKTFVGAAERDGRRLVVSMMHGLNAPGGP 279 Query 267 TYWDQAATLFDWGFALNPQASVGSL 291 TYWDQA L DWGFAL P +VG L Sbjct 280 TYWDQAQALLDWGFALGPDQNVGQL 304 >gi|169630315|ref|YP_001703964.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus ATCC 19977] gi|169242282|emb|CAM63310.1| Probable D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus] Length=287 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 181/275 (66%), Positives = 215/275 (79%), Gaps = 10/275 (3%) Query 17 TVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLA 76 T+ G A AD + P P+GPAQ W+VADLDSGQ+LA RD H PASTIKVLLA Sbjct 23 TLPVGVARADM------AAPPPEGPAQAWLVADLDSGQILAARDPYATHAPASTIKVLLA 76 Query 77 LVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHML 136 LVALDE+ +++TVVAD AD +AECNCVG+K G++YTAR+LLD LL SGNDAANTLAH+L Sbjct 77 LVALDEVPMDATVVADAADAKAECNCVGIKAGQTYTARELLDAALLESGNDAANTLAHLL 136 Query 137 GGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQI 196 GG+ TV KMNAKAA LGATSTH +PSGLD PG ++ HDL VIFRAA+ANPVFA+I Sbjct 137 GGRQATVDKMNAKAAALGATSTHTDSPSGLDAPGMDMRTSPHDLAVIFRAALANPVFAEI 196 Query 197 TAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAM 256 TA+PSA FP + NQ+EL+ RYPG IGGKTG+T+ ARKT+V AA R G+RLV++M Sbjct 197 TAQPSAPFPGRG----LHNQNELMYRYPGVIGGKTGFTDIARKTYVVAAERDGKRLVVSM 252 Query 257 MYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 MYGLV EGGPTYWDQAA+LFDWGF + +SVGSL Sbjct 253 MYGLVHEGGPTYWDQAASLFDWGFVNDGSSSVGSL 287 >gi|108798929|ref|YP_639126.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. MCS] gi|119868044|ref|YP_937996.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. KMS] gi|108769348|gb|ABG08070.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. MCS] gi|119694133|gb|ABL91206.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. KMS] Length=264 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/255 (57%), Positives = 178/255 (70%), Gaps = 9/255 (3%) Query 27 ADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLN 86 A QPAG+V +P+GPAQ W++ADLDSG+VLA R+ H PASTIKVLLA+V LD L + Sbjct 17 AQPQPAGAVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPD 76 Query 87 STVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKM 146 + A+ + T+ EC+CVG+ PG+ YT RQLL LL+VSGNDAAN LA MLGGQ VA M Sbjct 77 NFARANRSHTEVECSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADMLGGQRAAVAAM 136 Query 147 NAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPS 206 N KAA +GA ST A++PSGLDGPG +T HDL V+ RAA+ P+ AQI P+A FP Sbjct 137 NRKAALVGAKSTRASSPSGLDGPGWESITTPHDLAVMLRAALKYPLIAQIMRSPTAPFPG 196 Query 207 DNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGP 266 + + NQ+ELL RYPG I GKTG+TN ARKT+VGAA RG RRL + MYG Sbjct 197 ----KTLTNQNELLSRYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVVQMYGTGD---- 248 Query 267 TYWDQAATLFDWGFA 281 + QA LFD+GF+ Sbjct 249 -LYGQAIGLFDYGFS 262 >gi|126434529|ref|YP_001070220.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. JLS] gi|126234329|gb|ABN97729.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. JLS] Length=264 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 144/255 (57%), Positives = 178/255 (70%), Gaps = 9/255 (3%) Query 27 ADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLN 86 A QPAG+V +P+GPAQ W++ADLDSG+VLA R+ H PASTIKVLLA+V LD L + Sbjct 17 AQPQPAGAVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPD 76 Query 87 STVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKM 146 + A+ + T+ EC+CVG+ PG+ YT RQLL LL+VSGNDAAN LA MLGGQ VA M Sbjct 77 NFARANRSHTEVECSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADMLGGQRAAVAAM 136 Query 147 NAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPS 206 N KAA +GA ST A++PSGLDGPG +T HDL V+ RAA+ P+ AQI P+A FP Sbjct 137 NRKAALVGAKSTRASSPSGLDGPGWESITTPHDLAVMLRAALNYPLIAQIMRSPTAPFPG 196 Query 207 DNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGP 266 + + NQ+ELL RYPG I GKTG+TN ARKT+VGAA RG RRL + MYG Sbjct 197 ----KTLTNQNELLSRYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVVQMYGTGD---- 248 Query 267 TYWDQAATLFDWGFA 281 + QA LFD+GF+ Sbjct 249 -LYGQAIGLFDYGFS 262 >gi|118471560|ref|YP_886772.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118172847|gb|ABK73743.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length=275 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 142/245 (58%), Positives = 175/245 (72%), Gaps = 9/245 (3%) Query 37 IPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADT 96 + DGPA+ W+VAD+D+G+VLA +D ++ PASTIK LLA+V LD L ++ A+ + T Sbjct 39 VTDGPAKAWLVADMDTGRVLASKDPYGSYAPASTIKPLLAMVVLDHLRPDNFARANASHT 98 Query 97 QAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGAT 156 + EC+CVG+KPG+ YT RQLLD LL+VSGNDAAN LA MLGG V VA MN KAA +GA Sbjct 99 KVECSCVGLKPGQPYTTRQLLDALLMVSGNDAANMLADMLGGPRVAVAAMNRKAAAVGAR 158 Query 157 STHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQ 216 +T A +PSGLDGPG +T HDL VIFRAA+ PV AQI + +A FP + + Q Sbjct 159 NTRAASPSGLDGPGWESLTTPHDLAVIFRAALNYPVIAQILRQTTAQFPG----KTLTYQ 214 Query 217 DELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLF 276 +ELL RYPG IGGKTGYTN ARKT+VGAA RG RRLV+ MYG G Y DQA LF Sbjct 215 NELLTRYPGDIGGKTGYTNLARKTYVGAAQRGNRRLVVVQMYGT----GDLY-DQAIRLF 269 Query 277 DWGFA 281 D+GF+ Sbjct 270 DYGFS 274 >gi|145224759|ref|YP_001135437.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium gilvum PYR-GCK] gi|145217245|gb|ABP46649.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium gilvum PYR-GCK] Length=277 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/245 (56%), Positives = 169/245 (69%), Gaps = 9/245 (3%) Query 37 IPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADT 96 IPDGPA+ W+VADLD+G+VLA +D + PASTIKVLLA+ LD L +S A+ + T Sbjct 40 IPDGPAKAWLVADLDTGRVLASKDPYGTYAPASTIKVLLAMTVLDHLRPDSFARANESHT 99 Query 97 QAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGAT 156 + EC+C G+ PG++YT QL+ +L+VSGNDAA L MLGGQ V VA MN KAA +GA Sbjct 100 KIECSCAGLTPGQAYTTAQLVSAILMVSGNDAATMLGDMLGGQRVAVAAMNRKAALVGAR 159 Query 157 STHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQ 216 ST A++ SGLDGPG +T HDL VI RAA+ P+ AQI P+A FP + + NQ Sbjct 160 STKASSTSGLDGPGWESVTTPHDLAVIMRAALKYPLIAQIMRSPTAPFPG----KTLHNQ 215 Query 217 DELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLF 276 +ELL RYPG +GGKTG+TN ARKT+VGAA RG RRLV+ MYG G Y QA L Sbjct 216 NELLSRYPGDLGGKTGFTNLARKTYVGAAQRGNRRLVVVQMYGT----GDLY-GQAMQLL 270 Query 277 DWGFA 281 D+GF+ Sbjct 271 DYGFS 275 >gi|315445089|ref|YP_004077968.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] gi|315263392|gb|ADU00134.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] Length=277 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/245 (56%), Positives = 169/245 (69%), Gaps = 9/245 (3%) Query 37 IPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADT 96 IPDGPA+ W+VADLD+G+VLA +D + PASTIKVLLA+ LD L +S A+ + T Sbjct 40 IPDGPAKAWLVADLDTGRVLASKDPYGTYAPASTIKVLLAMTVLDHLRPDSFARANESHT 99 Query 97 QAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGAT 156 + EC+C G+ PG++YT QL+ +L+VSGNDAA L MLGGQ V VA MN KAA +GA Sbjct 100 KIECSCAGLTPGQAYTTAQLVSAILMVSGNDAATMLGDMLGGQRVAVAAMNRKAALVGAR 159 Query 157 STHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQ 216 ST A++ SGLDGPG +T HDL VI RAA+ P+ AQI P+A FP + + NQ Sbjct 160 STKASSTSGLDGPGWESVTTPHDLAVIMRAALKYPLIAQIMRSPTAPFPG----KTLHNQ 215 Query 217 DELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLF 276 +ELL RYPG +GGKTG+TN ARKT+VGAA RG RRLV+ MYG G Y QA L Sbjct 216 NELLSRYPGDLGGKTGFTNLARKTYVGAAQRGNRRLVVVQMYGT----GDLY-GQAMQLL 270 Query 277 DWGFA 281 D+GF+ Sbjct 271 DYGFS 275 >gi|120403175|ref|YP_953004.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium vanbaalenii PYR-1] gi|119955993|gb|ABM12998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium vanbaalenii PYR-1] Length=278 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 134/243 (56%), Positives = 170/243 (70%), Gaps = 9/243 (3%) Query 39 DGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQA 98 DGPA+ W+VADLD+G+VLA ++ + PASTIKVLLA+ LD L ++ A+ + T+ Sbjct 43 DGPAEAWLVADLDTGRVLASKNPYGTYAPASTIKVLLAMTVLDHLRPDNFARANESHTRV 102 Query 99 ECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATST 158 EC+CVG++PG++YT QL+ +L+VSGNDAAN LA MLGGQ V VA MN KAA +GA ST Sbjct 103 ECSCVGLQPGQAYTTAQLVAAILMVSGNDAANMLADMLGGQRVAVAAMNRKAALVGARST 162 Query 159 HATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDE 218 A++PSGLDGPG +T HDL VI RAA+ P+ AQI PSA FP + + NQ+E Sbjct 163 RASSPSGLDGPGWESVTTPHDLAVIMRAALKYPLIAQIMRSPSAPFPG----KTLHNQNE 218 Query 219 LLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDW 278 LL RYPG + GKTG+TN ARKT+VGAA RG RRLV+ MYG G Y A L D+ Sbjct 219 LLSRYPGDLAGKTGFTNLARKTYVGAAQRGNRRLVVVQMYGT----GDLY-GHAIRLLDY 273 Query 279 GFA 281 GF+ Sbjct 274 GFS 276 >gi|317508309|ref|ZP_07965989.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] gi|316253484|gb|EFV12874.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] Length=297 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 147/302 (49%), Positives = 191/302 (64%), Gaps = 21/302 (6%) Query 4 LMTATAALCACAVTVSAGAAWADAD------------VQPAGSVPIPDGPAQTWIVADLD 51 L TA L A + ++A A++A AD VQP+GS P+PDG A W+VADLD Sbjct 2 LRTALRTLIAISSAMAATASFATADPDDPTLAPQSGVVQPSGSEPVPDGAAPAWLVADLD 61 Query 52 SGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCV--GVKPGR 109 +G+VLA R+ + + PASTIK LLA+V L ELD+ ++ + D A+ + ++PG Sbjct 62 TGEVLAARNPHSHYHPASTIKTLLAIVVLSELDVGQSLTENADDEAADRESIVRFIRPGE 121 Query 110 SYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGP 169 ++T R+LL+ LL++S N AANTLA LGG VAKMNA+AA LGA T A TPSGL+ P Sbjct 122 THTVRELLEALLMISSNGAANTLARALGGVGPAVAKMNAEAARLGANDTRAATPSGLEAP 181 Query 170 GGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGG 229 G S S+ HDL + FRAA+ NP FA+I + A QL VN+D LL YPG +GG Sbjct 182 GVS--SSPHDLALFFRAALRNPTFAEIVRQERATVSGSPAIQL-VNRDPLLGSYPGMLGG 238 Query 230 KTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVG 289 KTG+T+ A+ FVGAAAR GRRLV+A+M+ G QA LFDWGFAL P VG Sbjct 239 KTGFTDEAQYNFVGAAARHGRRLVVAVMH----NPGSYPAQQARALFDWGFALEPGLEVG 294 Query 290 SL 291 +L Sbjct 295 TL 296 >gi|317508066|ref|ZP_07965751.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] gi|316253634|gb|EFV13019.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] Length=399 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 136/268 (51%), Positives = 170/268 (64%), Gaps = 7/268 (2%) Query 29 VQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNST 88 VQPAGS +P+GPA+ W+VADLDSGQVLA D + PASTIK LLAL LDELD N Sbjct 77 VQPAGSPALPEGPARGWLVADLDSGQVLAASDPHGRFRPASTIKTLLALAVLDELDPNHV 136 Query 89 VVADVADTQA--ECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLG---GQDVTV 143 V D A E ++PG YT +LL+G L+VS N AAN LA +LG G + V Sbjct 137 VQLTDGDQTADEESQHPFIEPGGKYTVFELLEGALMVSSNGAANALARVLGAGGGVEAAV 196 Query 144 AKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAM 203 KMN A LGA T ATTPSG++ PGG S+ +DL +IFRAAM +F +I ++ S Sbjct 197 KKMNDLAGLLGAKDTRATTPSGVEAPGGPSTSSPYDLALIFRAAMKQDIFRKIVSQKSIT 256 Query 204 FPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKE 263 D + +VN + +L YPG +GGKTG+T ++KTFV AA R GRRLV+ MYGL Sbjct 257 MHGDPDDFPLVNDNAMLDDYPGMLGGKTGFTEDSQKTFVAAAERDGRRLVVTQMYGL--N 314 Query 264 GGPTYWDQAATLFDWGFALNPQASVGSL 291 G T+ +QA+ L DWGFAL+P VG L Sbjct 315 GATTFREQASALLDWGFALDPALGVGKL 342 >gi|343926643|ref|ZP_08766141.1| D-alanyl-D-alanine carboxypeptidase [Gordonia alkanivorans NBRC 16433] gi|343763395|dbj|GAA13067.1| D-alanyl-D-alanine carboxypeptidase [Gordonia alkanivorans NBRC 16433] Length=434 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/259 (50%), Positives = 169/259 (66%), Gaps = 15/259 (5%) Query 45 WIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVG 104 W++ADLDSG V+A +D + + PASTIKVLLAL+ LDELDL++TV+ D E + G Sbjct 117 WLIADLDSGNVIAAKDPHGRYRPASTIKVLLALIVLDELDLDATVLPTAEDWSTEGDSCG 176 Query 105 VKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPS 164 + PG YT R LL GLL+VSGND AN LA LGG + T+ KMNA+A LGA+ T A +PS Sbjct 177 MGPGGRYTVRDLLTGLLMVSGNDCANALARELGGVETTLEKMNARARELGASDTRAASPS 236 Query 165 GLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFP-----------SDNGEQLI 213 GLD G S S+ +DL +I+R AMA F ++ A+P+ FP D+ + Sbjct 237 GLDAAGMS--SSPYDLALIYREAMAQGTFRELIAKPTFRFPGYPRRPDVPGDKDHPPYDM 294 Query 214 VNQDELL-QRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQA 272 + + LL YPG +GGKTGYT+ ARKTFVGAA R GRR+++ MYGL EG YWDQA Sbjct 295 YSSNRLLVDGYPGMLGGKTGYTDDARKTFVGAAERDGRRILVVQMYGLSVEGD-MYWDQA 353 Query 273 ATLFDWGFALNPQASVGSL 291 +F++GF P+ +VG L Sbjct 354 REMFEYGFRAGPEITVGRL 372 >gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC 33707] gi|325553558|gb|EGD23236.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC 33707] Length=444 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 138/294 (47%), Positives = 181/294 (62%), Gaps = 26/294 (8%) Query 9 AALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPA 68 AAL C V + G A++ G W+++DLD+GQVLA +D + + PA Sbjct 99 AALGNCGVVTAPGTPPLPAEISATG-----------WVLSDLDTGQVLAAKDPHGRYRPA 147 Query 69 STIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDA 128 STIKVLLALVALDELDL++T+VA+ E + VG+ G +Y+ QL+ GL++ SGNDA Sbjct 148 STIKVLLALVALDELDLDTTIVANPEAASMEGSSVGLGAGGTYSNLQLMQGLVMRSGNDA 207 Query 129 ANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAM 188 A LA LGG+ TVAKMNAKAA+LGA+ T + SGLDGPG S ++ +DL + FRAAM Sbjct 208 AQALAQQLGGEQATVAKMNAKAASLGASDTRTASVSGLDGPGMS--TSPYDLALFFRAAM 265 Query 189 ANPVFAQITAEPSAMFPSDNGEQL-----------IVNQDELLQRYPGAIGGKTGYTNAA 237 NP FA + + MFP + I N ++LL YPGA+GGKTGYT+ A Sbjct 266 QNPTFAGLITTDTVMFPGHPADPTKPDDKPVDPYPIFNDNQLLANYPGALGGKTGYTDDA 325 Query 238 RKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 R+TFVG A R GRRL + +M V P W+Q L D+G+AL+P SVG L Sbjct 326 RQTFVGGAERDGRRLAVTLMAADVLPIRP--WEQVGRLLDYGWALDPAVSVGVL 377 >gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S] gi|311890112|emb|CBH49430.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi 103S] Length=444 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 138/294 (47%), Positives = 180/294 (62%), Gaps = 26/294 (8%) Query 9 AALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPA 68 AAL C V + G A++ G W+++DLD+GQVLA +D + + PA Sbjct 99 AALGNCGVVTAPGTPPLPAEISATG-----------WVLSDLDTGQVLAAKDPHGRYRPA 147 Query 69 STIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDA 128 STIKVLLALVALDELDL++T+VA E + VG+ G +Y+ QL+ GL++ SGNDA Sbjct 148 STIKVLLALVALDELDLDTTIVASPEAASMEGSSVGLGAGGTYSNLQLMQGLVMRSGNDA 207 Query 129 ANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAM 188 A LA LGG+ TVAKMNAKAA+LGA+ T + SGLDGPG S ++ +DL + FRAAM Sbjct 208 AQALAQQLGGEQATVAKMNAKAASLGASDTRTASVSGLDGPGMS--TSPYDLALFFRAAM 265 Query 189 ANPVFAQITAEPSAMFPSDNGEQL-----------IVNQDELLQRYPGAIGGKTGYTNAA 237 NP FA + + MFP + I N ++LL YPGA+GGKTGYT+ A Sbjct 266 QNPTFAGLITTDTVMFPGHPADPTKPDDKPVDPYPIFNDNQLLANYPGALGGKTGYTDDA 325 Query 238 RKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 R+TFVG A R GRRL + +M V P W+Q L D+G+AL+P SVG L Sbjct 326 RQTFVGGAERDGRRLAVTLMAADVLPIRP--WEQVGRLLDYGWALDPAVSVGVL 377 >gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB1 [Mycobacterium abscessus ATCC 19977] gi|169242727|emb|CAM63755.1| Probable penicillin-binding protein DacB1 [Mycobacterium abscessus] Length=429 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 132/273 (49%), Positives = 177/273 (65%), Gaps = 14/273 (5%) Query 29 VQPAGSVPIP-DGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNS 87 + P G+ P+P D A++W++ADL++G V+A +D + H PAS IKVL+A+ A++ L+LN Sbjct 100 ITPDGAGPVPNDISAESWLIADLNTGNVVAAKDPHARHRPASVIKVLVAMEAINNLNLNQ 159 Query 88 TVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMN 147 VV D +E VGV G +YT RQLL GLL+ SGNDAA+ LA LGG D TVAK+N Sbjct 160 AVVGTQEDANSEGTRVGVDVGGTYTVRQLLTGLLMNSGNDAAHALAVQLGGMDETVAKIN 219 Query 148 AKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFP-- 205 A LGA T A TPSGLDGPG S ++A+DL + ++ A A+P FA + + P A FP Sbjct 220 DMAQKLGARDTRAATPSGLDGPGMS--TSAYDLGLFYKYAFADPTFADLVSAPKATFPGH 277 Query 206 -------SDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMY 258 D+ + N ++LL YPGA+GGKTGYT+ A++TFVGAA R GRRLV+ M+ Sbjct 278 PAKPGERDDHPAYEMTNDNKLLYNYPGALGGKTGYTDDAQQTFVGAAERDGRRLVVTMLR 337 Query 259 GLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 G P W+QAA L D+GF+ AS+G L Sbjct 338 GTRLPIAP--WEQAAHLLDYGFSTPRDASIGKL 368 >gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis SK121] gi|229323649|gb|EEN89407.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis SK121] Length=429 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/275 (49%), Positives = 175/275 (64%), Gaps = 16/275 (5%) Query 29 VQPAGSVPIP-DGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNS 87 V P G+ P+P D A W++AD ++G+VLA +D + + PASTIK+LLALVALDELDL++ Sbjct 93 VLPDGAPPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELDLDT 152 Query 88 TVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMN 147 + A D AE + VG+ G YT RQL+ GL++ SGNDAA+ LA LGG V+KMN Sbjct 153 EITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGDAAAVSKMN 212 Query 148 AKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFP-- 205 A AA LGA T TPSGLDGPG S S+++DL VIF A+ NP FA + + FP Sbjct 213 ALAAELGALDTRTATPSGLDGPGMS--SSSYDLAVIFHTALQNPTFAGLIHTETVEFPGF 270 Query 206 ---------SDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAM 256 D + N ++LL Y GA+GGKTG+T+ AR T+VGAA R GR+L++ + Sbjct 271 PKDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTL 330 Query 257 MYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 M G K P W+QAA L D+G+AL +VGSL Sbjct 331 MGGEAKPIRP--WEQAARLLDYGYALPASTTVGSL 363 >gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] gi|226244201|dbj|BAH54549.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] Length=426 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 136/292 (47%), Positives = 173/292 (60%), Gaps = 26/292 (8%) Query 11 LCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPAST 70 L C V + GA AD+ +G W+VAD+DSG VLA +D + + PAST Sbjct 81 LAECGVALPDGAPALPADIAASG-----------WVVADIDSGDVLAAKDPHGRYRPAST 129 Query 71 IKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAAN 130 IK+LLALVALDELDL+ TV A D E + VG+ YT RQL+ GL++ SGNDAA+ Sbjct 130 IKMLLALVALDELDLDKTVTATAEDAAVEGSAVGIGKNGQYTNRQLMQGLVMASGNDAAH 189 Query 131 TLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMAN 190 LA LGG TV KMN A TLGA T TPSGLDGPG S S+ DL +IF AM N Sbjct 190 LLARQLGGDAATVEKMNRLADTLGAHDTRTATPSGLDGPGMS--SSPFDLALIFHNAMKN 247 Query 191 PVFAQITAEPSAMFP-----------SDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARK 239 P FA++ + + FP D + N ++LL YPGA+GGKTG+T+ AR Sbjct 248 PTFAELISTETVQFPGFPKDPAIPEDQDRPPFALANDNQLLYNYPGALGGKTGFTDDARH 307 Query 240 TFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 T+VG A GRRL++ +M + P W+QAA L D+GFAL+ + VGSL Sbjct 308 TYVGGADHDGRRLMVTLMGAEAQPIRP--WEQAARLLDYGFALDRDSRVGSL 357 >gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] gi|226184616|dbj|BAH32720.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] Length=437 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 132/275 (48%), Positives = 173/275 (63%), Gaps = 16/275 (5%) Query 29 VQPAGSVPIP-DGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNS 87 V P G+ P+P D A W++AD ++G+VLA +D + + PASTIK+LLALVALDELDL++ Sbjct 101 VLPDGAPPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELDLDT 160 Query 88 TVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMN 147 + A D AE + VG+ G YT RQL+ GL++ SGNDAA+ LA LGG V+KMN Sbjct 161 EITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGDAAAVSKMN 220 Query 148 AKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFP-- 205 A A LGA T TPSGLDGPG S S+ +DL VIF A+ NP FA + + FP Sbjct 221 ALAVELGALDTRTATPSGLDGPGMS--SSPYDLAVIFHTALQNPTFAGLIHTETVEFPGF 278 Query 206 ---------SDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAM 256 D + N ++LL Y GA+GGKTG+T+ AR T+VGAA R GR+L++ + Sbjct 279 PKDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTL 338 Query 257 MYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 M G K P W+QAA L D+G+AL +VGSL Sbjct 339 MGGEAKPIRP--WEQAARLLDYGYALPASTTVGSL 371 >gi|333921635|ref|YP_004495216.1| serine-type D-Ala-D-Ala carboxypeptidase [Amycolicicoccus subflavus DQS3-9A1] gi|333483856|gb|AEF42416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Amycolicicoccus subflavus DQS3-9A1] Length=443 Score = 231 bits (589), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 132/293 (46%), Positives = 173/293 (60%), Gaps = 28/293 (9%) Query 11 LCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPAST 70 L C + ++ GA ++ A +W+VADLD+G VLA +D + H PAST Sbjct 101 LADCELVLAPGAPEPPEEIS-----------AASWLVADLDTGDVLAAKDPHGRHRPAST 149 Query 71 IKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAAN 130 IK LLALVA DE+DL T++ D E + G+ PG YT L+ L++ SGNDAAN Sbjct 150 IKTLLALVAFDEIDLGRTIIGTTEDANIEGSRAGIGPGGEYTNEILMKALVMASGNDAAN 209 Query 131 TLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMAN 190 +A LGG D TV KMN AA LGA T A TPSGLDGPG S S+A+DL VIFRAAM N Sbjct 210 AIAQQLGGVDETVRKMNEYAAELGALDTRAATPSGLDGPGMS--SSAYDLAVIFRAAMEN 267 Query 191 PVFAQITAEPSAMFPS-----------DNGEQLIVNQDELLQRYPGAIGGKTGYTNAARK 239 PVF + P FP D + N + + YP +IGGK G+TN+AR+ Sbjct 268 PVFVEYLQTPHIDFPGYPADPATPGDFDRPGFAMGNDNVVNWMYPDSIGGKNGFTNSARQ 327 Query 240 TFVGAAARGGRRLVIAMMYGLVKEGGPT-YWDQAATLFDWGFALNPQASVGSL 291 T+VGAA R GRRL++++M + E P W Q A LFD+GF + +++VG+L Sbjct 328 TYVGAAERDGRRLIVSVM---MAENEPKPVWQQVADLFDYGFGIGEESTVGTL 377 >gi|333991792|ref|YP_004524406.1| penicillin-binding protein DacC [Mycobacterium sp. JDM601] gi|333487760|gb|AEF37152.1| penicillin-binding protein DacC [Mycobacterium sp. JDM601] Length=400 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/284 (49%), Positives = 171/284 (61%), Gaps = 17/284 (5%) Query 10 ALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPAS 69 AL C + V+ G DV A++W+VAD+DSG V+A RD + H PAS Sbjct 68 ALAGCGIVVAPGTPPVPGDVS-----------AESWLVADMDSGAVIAARDPHGRHRPAS 116 Query 70 TIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAA 129 IKVL A+ AL+ELDL V D AE VGV PG +T QLL GLL+ SGNDAA Sbjct 117 VIKVLTAMAALNELDLAKVVPGTQEDANAEGTRVGVGPGGDFTVNQLLHGLLMGSGNDAA 176 Query 130 NTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMA 189 + LA LGG D + K+NA AA LG T A TPSGLDGPG S ++A+D+ + +R A Sbjct 177 HALATELGGMDTALHKINALAARLGGRDTRAATPSGLDGPGMS--TSAYDIALFYRYAWN 234 Query 190 NPVFAQITAEPSAMFP--SDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAAR 247 NPVFA I A + FP D + N ++LL YPGA+GGKTGYT+ A +TFVGAA+R Sbjct 235 NPVFADIVATRNFAFPGYGDVPGYTLENDNQLLYNYPGALGGKTGYTDDAGQTFVGAASR 294 Query 248 GGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 GRRLV ++ G + P W QAA L D+GFA P VG+L Sbjct 295 DGRRLVAVLLRGTRQPIPP--WQQAAQLLDYGFATPPGTRVGTL 336 >gi|296394587|ref|YP_003659471.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] gi|296181734|gb|ADG98640.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] Length=407 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/286 (48%), Positives = 172/286 (61%), Gaps = 7/286 (2%) Query 11 LCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPAST 70 L AVTV A + VQP GS +P GPA W+VADLD+GQVLA D + PAST Sbjct 66 LPVPAVTVGGAALASCGVVQPPGSPALPQGPAHGWLVADLDNGQVLAAEDPHGRFRPAST 125 Query 71 IKVLLALVALDELDLNSTVVADVADTQA--ECNCVGVKPGRSYTARQLLDGLLLVSGNDA 128 +K LLAL L+ELD V D A E ++ G +Y+ LL+G L+VS N A Sbjct 126 VKTLLALAVLNELDPKQLVQLTEGDQTADEESEHKFIQAGTTYSVFDLLEGALMVSSNGA 185 Query 129 ANTLAHMLGGQD---VTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFR 185 AN LA +LGG V KMN+ A LGA T ATTPSG++ PGG +S+ +DL +IFR Sbjct 186 ANALARVLGGPGGVAAAVQKMNSLADELGAKDTRATTPSGVEAPGGPSSSSPYDLALIFR 245 Query 186 AAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAA 245 AAM + F +I + S + + +VN + +L YPG +GGKTGYT+ A KTFVGAA Sbjct 246 AAMKHADFRKIVGQKSVSMHGNPDDFPLVNDNAMLDDYPGMLGGKTGYTDDAEKTFVGAA 305 Query 246 ARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 RG RRLV+ MYGL G T+ +QAA L DWGF+ +P VG L Sbjct 306 ERGRRRLVVTQMYGL--NGASTFREQAAALLDWGFSSDPAIGVGKL 349 >gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118172334|gb|ABK73230.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length=397 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/258 (52%), Positives = 162/258 (63%), Gaps = 6/258 (2%) Query 36 PIP-DGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVA 94 P+P D A+ WIVAD+D+G V+A RD + H PAS IKVL A AL+EL+LN V Sbjct 84 PVPEDVSAEAWIVADMDTGDVIAARDPHGRHRPASIIKVLTATAALNELNLNKRVAGTQD 143 Query 95 DTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLG 154 D AE VGV PG YT LL GLL+ SGNDAA+ LA LGG D + K+N AA LG Sbjct 144 DANAEGTRVGVGPGGQYTINDLLHGLLMYSGNDAAHALAMQLGGWDPALQKLNTLAAKLG 203 Query 155 ATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFP-SDNGEQLI 213 T A TPSGLDGPG S ++A+D+ + +R A NPVFA I S FP D G I Sbjct 204 GRDTRAATPSGLDGPGMS--TSAYDIALFYRYAWQNPVFADIVHTQSYQFPGRDGGSYPI 261 Query 214 VNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAA 273 N ++LL YPGA+GGKTGYT+ A +TFVGAA R GRRL+ ++ G P W+QAA Sbjct 262 ENDNKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLIAVLLKGTRVPIAP--WEQAA 319 Query 274 TLFDWGFALNPQASVGSL 291 L D+GFA P VG+L Sbjct 320 RLLDYGFATPPGTKVGTL 337 >gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|299792290|gb|ADJ42665.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|340524150|gb|AEK39355.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei S699] Length=414 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 131/259 (51%), Positives = 165/259 (64%), Gaps = 9/259 (3%) Query 29 VQPAGSVPIPDG-PAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNS 87 V P+G++ PDG A +W+V DLD+G V+A +D + PAS IK LLALV + +LD Sbjct 82 VTPSGALNPPDGNTAASWLVQDLDTGAVVAAKDPHARQRPASLIKTLLALVVVTQLDPQQ 141 Query 88 TVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMN 147 T+VA D + EC CVG+ G YT QLL GLL+ SGND A+ A LGG D VAKMN Sbjct 142 TIVATKEDAEQECTCVGLVAGGQYTVDQLLHGLLMHSGNDVAHVFATALGGPDSAVAKMN 201 Query 148 AKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSD 207 A AA +GA T A TPSGLDGPG S ++A+DL +IF AM P FA++ A + FP Sbjct 202 ALAAKIGALDTRAATPSGLDGPGMS--TSAYDLSLIFNYAMKQPEFAKVVATKNFEFPPA 259 Query 208 NGEQL--IVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGG 265 G+ I N ++LL YPG +GGKTG+T+ AR T+VGAA R G+RL + M L E Sbjct 260 GGKPAIPIFNDNKLLGVYPGFLGGKTGFTDDARHTYVGAAQRKGKRLAVVM---LRAEQK 316 Query 266 PT-YWDQAATLFDWGFALN 283 PT DQAA L D+GFAL Sbjct 317 PTKVVDQAAKLLDYGFALE 335 >gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] gi|110822736|gb|ABG98020.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] Length=431 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/292 (46%), Positives = 170/292 (59%), Gaps = 26/292 (8%) Query 11 LCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPAST 70 L C V + A AD+ +G W+VAD+D+G VLA +D + + PAST Sbjct 86 LAECGVILPDDAPALPADIAASG-----------WVVADIDTGDVLAAKDPHGRYRPAST 134 Query 71 IKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAAN 130 IK+LLALVAL ELDL+ TV A D E + VG+ YT RQL+ GL++ SGNDAA+ Sbjct 135 IKMLLALVALSELDLDKTVTATAEDAAVEGSAVGIGKNGQYTNRQLMQGLVMASGNDAAH 194 Query 131 TLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMAN 190 LA LGG TV KMN A TLGA T TPSGLDGPG S S+ DL +IF AM N Sbjct 195 LLARQLGGDAATVDKMNHLADTLGAHDTRTATPSGLDGPGMS--SSPFDLALIFHTAMKN 252 Query 191 PVFAQITAEPSAMFP-----------SDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARK 239 P FA++ + + FP D + N ++LL Y GA+GGKTG+T+ AR Sbjct 253 PTFAELISTETVQFPGFPKDPAIPDDQDRPPFALANDNQLLYNYDGALGGKTGFTDDARH 312 Query 240 TFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 T+VG A GRRL++ +M + P W+QAA L D+GFAL+ A VGSL Sbjct 313 TYVGGADHDGRRLMVTLMGAEAQPIRP--WEQAARLLDYGFALDRDAQVGSL 362 >gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC [Mycobacterium kansasii ATCC 12478] Length=408 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/259 (50%), Positives = 166/259 (65%), Gaps = 7/259 (2%) Query 36 PIP-DGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVA 94 P+P D A+ W+VADLDSG V+A RD + H PAS IKVL+A+ A++EL+LN +V Sbjct 90 PVPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASIIKVLVAMAAINELNLNKSVAGTDD 149 Query 95 DTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLG 154 D AE VGV G +YT QLL GLL+ SGNDAA+ LA LGG + + K+N AA LG Sbjct 150 DAAAEGTKVGVDAGGTYTVNQLLHGLLMHSGNDAAHALARQLGGMQMALEKINVLAAKLG 209 Query 155 ATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFP--SDNGEQL 212 T TPSGLDGPG S ++A+D+ + +R A NP FA I A S FP D+ Sbjct 210 GRDTRVATPSGLDGPGMS--TSAYDIGLFYRYAWRNPTFADIVATRSYDFPGHGDHPGYE 267 Query 213 IVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQA 272 + N ++LL YPGA+GGKTGYT+ A +TFVGAA R GRRL+ +++G + P W+QA Sbjct 268 LENDNQLLYHYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLLHGTRQPIAP--WEQA 325 Query 273 ATLFDWGFALNPQASVGSL 291 A L D+GF+ VGSL Sbjct 326 AHLLDYGFSTPAGTQVGSL 344 >gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia neofelifaecis NRRL B-59395] gi|326199370|gb|EGD56551.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia neofelifaecis NRRL B-59395] Length=416 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/259 (50%), Positives = 162/259 (63%), Gaps = 15/259 (5%) Query 45 WIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCVG 104 W++ADLDSG+V+A +D + + PASTIKVLLALVALDEL L+ V A D E + G Sbjct 109 WLIADLDSGRVIAAKDPHGRYRPASTIKVLLALVALDELPLDKQVEATPEDWSMEGDSCG 168 Query 105 VKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPS 164 + PG YT R LL GL++VSGND AN LA LGG D +AKMNAKAA LGA T AT+PS Sbjct 169 MGPGGHYTVRDLLSGLVVVSGNDCANALAGQLGGHDAALAKMNAKAAELGARDTRATSPS 228 Query 165 GLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPS-----------DNGEQLI 213 GLD PG S ++ +DL ++FR AM N F Q+ + + FP D+ + Sbjct 229 GLDAPGMS--TSPYDLALLFREAMGNATFRQLISMKNYTFPGYPKRPDVPDDVDHPAWTM 286 Query 214 VNQDELLQ-RYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQA 272 + LL+ +PG +GGKTGYT+ A KTFVGAA R GRR+VI MYGL E Y QA Sbjct 287 GTSNPLLRDDWPGMLGGKTGYTDDALKTFVGAAERNGRRIVITQMYGL-NEADNMYAQQA 345 Query 273 ATLFDWGFALNPQASVGSL 291 +FD+GFA G+L Sbjct 346 ERMFDYGFAAPESVDAGTL 364 >gi|296394426|ref|YP_003659310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] gi|296181573|gb|ADG98479.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] Length=289 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 136/265 (52%), Positives = 170/265 (65%), Gaps = 12/265 (4%) Query 29 VQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNST 88 +QPAGS P P+G A W+VADLD+G+VLA RD + + PASTIK LLA+V LDELD Sbjct 32 LQPAGSAPAPEGAAPAWLVADLDTGEVLASRDAHGRYRPASTIKTLLAIVVLDELDTAQK 91 Query 89 VVADVADTQAECNCV--GVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKM 146 V AD A+ V ++PG + +LL+ L++S N AAN LA LGG VAKM Sbjct 92 VTETDADEVADRESVVKFIRPGEVRSVYELLEATLMISSNGAANALARSLGGVGAAVAKM 151 Query 147 NAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPS 206 NA+AA LGA THA TPSGL+ PG S ++ +DL ++F+AA+ P FA I + SA P Sbjct 152 NAEAARLGALDTHAATPSGLEAPGAS--TSPNDLALLFQAALRRPDFAAIVGQESAALP- 208 Query 207 DNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGP 266 G QL VN+D LL YPG +GGKTG+T+ A+ FVGAAAR GRRLV+A+M+ G Sbjct 209 --GAQL-VNRDPLLGSYPGMLGGKTGFTDEAQYNFVGAAARSGRRLVVAVMH----NPGS 261 Query 267 TYWDQAATLFDWGFALNPQASVGSL 291 QA L DWGF L P VGSL Sbjct 262 YPARQAGALLDWGFELEPGLGVGSL 286 >gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM 43827] gi|255924756|gb|ACU40267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM 43827] Length=669 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 124/251 (50%), Positives = 162/251 (65%), Gaps = 5/251 (1%) Query 42 AQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECN 101 A+TW+VAD+DSG VLA D + PAS IKVLLA+VA EL L+S + A DT+ EC Sbjct 83 AKTWLVADMDSGAVLAAYDPHGRQRPASVIKVLLAMVAAKELPLDSQMTAIEEDTEQECT 142 Query 102 CVGVKPGRSYTARQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHAT 161 C+G+K G +YT QLL L++ SGND AN LA LGG + KMNA A LGA T A Sbjct 143 CIGLKAGNTYTVEQLLQSLVMASGNDVANALARRLGGLPSAIRKMNALATELGARDTRAI 202 Query 162 TPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDN-GEQLIVNQDELL 220 TPSGLD PG S ++A+D+ +IFRAAM P FA+ A FP++ G + ++N + L+ Sbjct 203 TPSGLDAPGTS--TSAYDVALIFRAAMKYPDFARAIATQRIEFPAEEGGTKPVINDNRLM 260 Query 221 QRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGF 280 Y GA+GGKTG+T+ A+ T+VGAA R GRRLV ++ + T DQAA L D+GF Sbjct 261 TSYAGALGGKTGFTDDAQHTYVGAAERDGRRLVAVLLRAQQQPLRTT--DQAARLLDYGF 318 Query 281 ALNPQASVGSL 291 +L +VG L Sbjct 319 SLPASTTVGKL 329 >gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] gi|119955387|gb|ABM12392.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] Length=403 Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 131/283 (47%), Positives = 167/283 (60%), Gaps = 16/283 (5%) Query 10 ALCACAVTVSAGAAWADADVQPAGSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPAS 69 AL C V + G ADV A+ W+VADLDSG V+A RD + H PAS Sbjct 74 ALSGCGVITAPGTPPVPADVS-----------AEAWLVADLDSGDVIAARDPHGRHRPAS 122 Query 70 TIKVLLALVALDELDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAA 129 IKVL A+ A+++L L+ + D E VGV PG Y+ LL GLL+ SGNDAA Sbjct 123 IIKVLTAMQAINDLPLHKVIPGTEEDAAQEGTKVGVGPGGFYSINDLLHGLLMYSGNDAA 182 Query 130 NTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMA 189 + LA +GG + K+NA A LGA T TPSGLDGPG S ++A+D+ + +R A Sbjct 183 HALAMQMGGMQTALNKINALAGKLGARDTRVATPSGLDGPGMS--TSAYDIGLFYRYAWQ 240 Query 190 NPVFAQITAEPSAMFPSDNGEQL-IVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARG 248 NPVF I A S+ FP +G I N ++LL YPGA+GGKTG+T+ A +TFVGAA R Sbjct 241 NPVFTDIVATRSSNFPGRDGAGYPIENDNKLLANYPGALGGKTGFTDDAGQTFVGAATRD 300 Query 249 GRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASVGSL 291 GRRLV ++ G + P W+QAA L D+GFA P VGSL Sbjct 301 GRRLVAVLLRGTRQPIAP--WEQAARLLDYGFATAPGTKVGSL 341 Lambda K H 0.316 0.130 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 477082076112 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40