BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2912c
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610049|ref|NP_217428.1| TetR family transcriptional regulat... 389 2e-106
gi|340627902|ref|YP_004746354.1| putative transcriptional regula... 388 3e-106
gi|254365551|ref|ZP_04981596.1| hypothetical transcriptional reg... 385 2e-105
gi|183981809|ref|YP_001850100.1| TetR family transcriptional reg... 342 2e-92
gi|118617618|ref|YP_905950.1| TetR family transcriptional regula... 336 1e-90
gi|240170566|ref|ZP_04749225.1| putative transcriptional regulat... 332 2e-89
gi|342858237|ref|ZP_08714892.1| TetR family transcriptional regu... 326 1e-87
gi|254821196|ref|ZP_05226197.1| transcriptional regulator, TetR ... 326 1e-87
gi|296171456|ref|ZP_06852742.1| TetR family transcriptional regu... 322 1e-86
gi|118466229|ref|YP_882939.1| TetR family transcriptional regula... 309 1e-82
gi|336459029|gb|EGO37979.1| transcriptional regulator [Mycobacte... 305 2e-81
gi|41409078|ref|NP_961914.1| hypothetical protein MAP2980c [Myco... 304 4e-81
gi|333989547|ref|YP_004522161.1| TetR family transcriptional reg... 283 1e-74
gi|289763088|ref|ZP_06522466.1| TetR family transcriptional regu... 263 8e-69
gi|118470636|ref|YP_890361.1| HTH-type transcriptional regulator... 260 7e-68
gi|169627783|ref|YP_001701432.1| putative HTH-type transcription... 171 4e-41
gi|311743401|ref|ZP_07717208.1| TetR family transcriptional regu... 119 3e-25
gi|333921711|ref|YP_004495292.1| putative transcriptional regula... 111 6e-23
gi|338532043|ref|YP_004665377.1| TetR family transcriptional reg... 101 7e-20
gi|108763662|ref|YP_635020.1| TetR family transcriptional regula... 100 9e-20
gi|34498880|ref|NP_903095.1| hypothetical protein CV_3425 [Chrom... 88.2 6e-16
gi|300784384|ref|YP_003764675.1| TetR family transcriptional reg... 85.9 3e-15
gi|310818224|ref|YP_003950582.1| TetR family transcriptional reg... 80.1 1e-13
gi|54024058|ref|YP_118300.1| putative transcriptional regulator ... 71.6 5e-11
gi|336178082|ref|YP_004583457.1| regulatory protein TetR [Franki... 71.6 5e-11
gi|170742796|ref|YP_001771451.1| TetR family transcriptional reg... 70.9 1e-10
gi|333991364|ref|YP_004523978.1| TetR family transcriptional reg... 70.5 1e-10
gi|302525611|ref|ZP_07277953.1| predicted protein [Streptomyces ... 70.1 1e-10
gi|260426661|ref|ZP_05780640.1| transcriptional regulator, TetR ... 69.7 2e-10
gi|338531327|ref|YP_004664661.1| TetR family transcriptional reg... 69.7 2e-10
gi|108761552|ref|YP_628362.1| TetR family transcriptional regula... 69.7 2e-10
gi|83950519|ref|ZP_00959252.1| putative transcriptional regulato... 69.7 2e-10
gi|134099783|ref|YP_001105444.1| TetR family transcriptional reg... 69.3 3e-10
gi|220921544|ref|YP_002496845.1| TetR family transcriptional reg... 68.9 4e-10
gi|56695487|ref|YP_165836.1| TetR family transcriptional regulat... 68.6 4e-10
gi|288924057|ref|ZP_06418117.1| transcriptional regulator, TetR ... 68.6 5e-10
gi|54027417|ref|YP_121659.1| putative transcriptional regulator ... 67.4 1e-09
gi|312138790|ref|YP_004006126.1| tetr family transcriptional reg... 67.0 1e-09
gi|169629478|ref|YP_001703127.1| putative transcriptional regula... 66.6 2e-09
gi|325676512|ref|ZP_08156190.1| TetR family transcriptional regu... 66.2 2e-09
gi|288917009|ref|ZP_06411380.1| transcriptional regulator, TetR ... 65.1 5e-09
gi|169627481|ref|YP_001701130.1| TetR family transcriptional reg... 65.1 6e-09
gi|269125808|ref|YP_003299178.1| TetR family transcriptional reg... 64.3 9e-09
gi|343928173|ref|ZP_08767628.1| putative TetR family transcripti... 63.5 1e-08
gi|111021280|ref|YP_704252.1| TetR family transcriptional regula... 63.5 1e-08
gi|226363622|ref|YP_002781404.1| TetR family transcriptional reg... 63.5 2e-08
gi|334343327|ref|YP_004555931.1| regulatory protein TetR [Sphing... 63.5 2e-08
gi|146275755|ref|YP_001165915.1| TetR family transcriptional reg... 63.5 2e-08
gi|89067670|ref|ZP_01155124.1| putative transcriptional regulato... 63.2 2e-08
gi|226303920|ref|YP_002763878.1| TetR family transcriptional reg... 63.2 2e-08
>gi|15610049|ref|NP_217428.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
H37Rv]
gi|15842455|ref|NP_337492.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31794088|ref|NP_856581.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97]
76 more sequence titles
gi|121638793|ref|YP_979017.1| TetR family transcriptional regulator [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148662756|ref|YP_001284279.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148824101|ref|YP_001288855.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
F11]
gi|167969541|ref|ZP_02551818.1| hypothetical transcriptional regulatory protein, tetR-family
[Mycobacterium tuberculosis H37Ra]
gi|224991285|ref|YP_002645974.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253798000|ref|YP_003031001.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
KZN 1435]
gi|254233003|ref|ZP_04926330.1| hypothetical protein TBCG_02850 [Mycobacterium tuberculosis C]
gi|254551984|ref|ZP_05142431.1| transcriptional regulator, tetR-family protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|289444467|ref|ZP_06434211.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
T46]
gi|289448577|ref|ZP_06438321.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
CPHL_A]
gi|289553299|ref|ZP_06442509.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
KZN 605]
gi|289571099|ref|ZP_06451326.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
T17]
gi|289575617|ref|ZP_06455844.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
K85]
gi|289746711|ref|ZP_06506089.1| TetR-family transcriptional regulator [Mycobacterium tuberculosis
02_1987]
gi|289751577|ref|ZP_06510955.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
T92]
gi|289755024|ref|ZP_06514402.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289759032|ref|ZP_06518410.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
T85]
gi|294993992|ref|ZP_06799683.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
210]
gi|297635530|ref|ZP_06953310.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
KZN 4207]
gi|297732529|ref|ZP_06961647.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
KZN R506]
gi|298526381|ref|ZP_07013790.1| transcriptional regulatory protein (probably tetR-family) [Mycobacterium
tuberculosis 94_M4241A]
gi|306777200|ref|ZP_07415537.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu001]
gi|306781107|ref|ZP_07419444.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu002]
gi|306785747|ref|ZP_07424069.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu003]
gi|306789786|ref|ZP_07428108.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu004]
gi|306794600|ref|ZP_07432902.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu005]
gi|306798843|ref|ZP_07437145.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu006]
gi|306804689|ref|ZP_07441357.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu008]
gi|306808881|ref|ZP_07445549.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu007]
gi|306968980|ref|ZP_07481641.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu009]
gi|306973317|ref|ZP_07485978.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu010]
gi|307081025|ref|ZP_07490195.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu011]
gi|307085624|ref|ZP_07494737.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu012]
gi|313659861|ref|ZP_07816741.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
KZN V2475]
gi|339632918|ref|YP_004724560.1| TetR family transcriptional regulator [Mycobacterium africanum
GM041182]
gi|54040636|sp|P67441.1|Y2936_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator
Mb2936c
gi|54042976|sp|P67440.1|Y2912_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
Rv2912c/MT2980
gi|1403434|emb|CAA98349.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY)
[Mycobacterium tuberculosis H37Rv]
gi|13882759|gb|AAK47306.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis
CDC1551]
gi|31619683|emb|CAD96623.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY)
[Mycobacterium bovis AF2122/97]
gi|121494441|emb|CAL72922.1| Probable transcriptional regulatory protein (probably tetR-family)
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124602062|gb|EAY61072.1| hypothetical protein TBCG_02850 [Mycobacterium tuberculosis C]
gi|148506908|gb|ABQ74717.1| TetR-family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148722628|gb|ABR07253.1| hypothetical transcriptional regulatory protein, tetR-family
[Mycobacterium tuberculosis F11]
gi|224774400|dbj|BAH27206.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253319503|gb|ACT24106.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
KZN 1435]
gi|289417386|gb|EFD14626.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
T46]
gi|289421535|gb|EFD18736.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
CPHL_A]
gi|289437931|gb|EFD20424.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
KZN 605]
gi|289540048|gb|EFD44626.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
K85]
gi|289544853|gb|EFD48501.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
T17]
gi|289687239|gb|EFD54727.1| TetR-family transcriptional regulator [Mycobacterium tuberculosis
02_1987]
gi|289692164|gb|EFD59593.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
T92]
gi|289695611|gb|EFD63040.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289714596|gb|EFD78608.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
T85]
gi|298496175|gb|EFI31469.1| transcriptional regulatory protein (probably tetR-family) [Mycobacterium
tuberculosis 94_M4241A]
gi|308214482|gb|EFO73881.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu001]
gi|308326093|gb|EFP14944.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu002]
gi|308329657|gb|EFP18508.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu003]
gi|308333796|gb|EFP22647.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu004]
gi|308337190|gb|EFP26041.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu005]
gi|308340921|gb|EFP29772.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu006]
gi|308344833|gb|EFP33684.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu007]
gi|308348781|gb|EFP37632.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu008]
gi|308353482|gb|EFP42333.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu009]
gi|308357347|gb|EFP46198.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu010]
gi|308361231|gb|EFP50082.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu011]
gi|308364851|gb|EFP53702.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
SUMu012]
gi|323718522|gb|EGB27693.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|326904526|gb|EGE51459.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
W-148]
gi|328457774|gb|AEB03197.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis
KZN 4207]
gi|339295748|gb|AEJ47859.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CCDC5079]
gi|339299364|gb|AEJ51474.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CCDC5180]
gi|339332274|emb|CCC27986.1| putative transcriptional regulatory protein (probably TETR-family)
[Mycobacterium africanum GM041182]
gi|341602831|emb|CCC65509.1| probable transcriptional regulatory protein (probably tetR-family)
[Mycobacterium bovis BCG str. Moreau RDJ]
gi|344220743|gb|AEN01374.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CTRI-2]
Length=195
Score = 389 bits (998), Expect = 2e-106, Method: Compositional matrix adjust.
Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL
Sbjct 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE
Sbjct 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
Query 181 EQRIPMLTALLTAGL 195
EQRIPMLTALLTAGL
Sbjct 181 EQRIPMLTALLTAGL 195
>gi|340627902|ref|YP_004746354.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340006092|emb|CCC45264.1| putative transcriptional regulatory protein (probably TETR-family)
[Mycobacterium canettii CIPT 140010059]
Length=195
Score = 388 bits (996), Expect = 3e-106, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL
Sbjct 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
KETLQNVLGQYSAKIHDAARALPGAESFPEETFPV+VALMTNVFDGAAIVRGVLPQPELE
Sbjct 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVVVALMTNVFDGAAIVRGVLPQPELE 180
Query 181 EQRIPMLTALLTAGL 195
EQRIPMLTALLTAGL
Sbjct 181 EQRIPMLTALLTAGL 195
>gi|254365551|ref|ZP_04981596.1| hypothetical transcriptional regulatory protein (probably tetR-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|134151064|gb|EBA43109.1| hypothetical transcriptional regulatory protein (probably tetR-family)
[Mycobacterium tuberculosis str. Haarlem]
Length=195
Score = 385 bits (988), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATAYEVLRRQLETFTKQVAEIPADR ALPAALTILRDITAGSTNAVLYELMVAARTDEKL
Sbjct 61 ATAYEVLRRQLETFTKQVAEIPADRRALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE
Sbjct 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
Query 181 EQRIPMLTALLTAGL 195
EQRIPMLTALLTAGL
Sbjct 181 EQRIPMLTALLTAGL 195
>gi|183981809|ref|YP_001850100.1| TetR family transcriptional regulator [Mycobacterium marinum
M]
gi|183175135|gb|ACC40245.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium
marinum M]
Length=200
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/195 (87%), Positives = 184/195 (95%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLLQASIDTI+EVGYARASAA+ITKRAGVSVGALFRHFETMGDFMA
Sbjct 1 MARTQQQRREETVARLLQASIDTIVEVGYARASAAIITKRAGVSVGALFRHFETMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATAYEVLRRQL+ FTKQVAEIPADRPAL AAL ILRDITAG+TNAVLYELM+AARTD+KL
Sbjct 61 ATAYEVLRRQLDIFTKQVAEIPADRPALEAALAILRDITAGATNAVLYELMIAARTDDKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
KETLQ+VLGQY AKI+DAAR LPGAE FPEETFP IVA++TNVFDGAAIV VLPQP+++
Sbjct 121 KETLQHVLGQYRAKIYDAARTLPGAEGFPEETFPAIVAVLTNVFDGAAIVGAVLPQPDID 180
Query 181 EQRIPMLTALLTAGL 195
EQRIP+L ALL+A +
Sbjct 181 EQRIPVLAALLSAAV 195
>gi|118617618|ref|YP_905950.1| TetR family transcriptional regulator [Mycobacterium ulcerans
Agy99]
gi|118569728|gb|ABL04479.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium
ulcerans Agy99]
Length=200
Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/195 (86%), Positives = 182/195 (94%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLLQASIDTI+ VGYARASAA+ITKRAGVSVGALFRHFETMGDFMA
Sbjct 1 MARTQQQRREETVARLLQASIDTIVGVGYARASAAIITKRAGVSVGALFRHFETMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATAYEVLRRQL+ FTKQVAEIPADRPAL AAL ILRDITAG+TNAVLYELM+AARTD+KL
Sbjct 61 ATAYEVLRRQLDIFTKQVAEIPADRPALEAALAILRDITAGATNAVLYELMIAARTDDKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
KETLQ+VLGQY AKI+DAAR LPGAE FPE TFP IVA++TNVFDGAAIV VLPQP+++
Sbjct 121 KETLQHVLGQYRAKIYDAARTLPGAEGFPEGTFPAIVAVLTNVFDGAAIVGAVLPQPDID 180
Query 181 EQRIPMLTALLTAGL 195
EQRIP+L ALL+A +
Sbjct 181 EQRIPVLAALLSAAV 195
>gi|240170566|ref|ZP_04749225.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=195
Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/195 (85%), Positives = 182/195 (94%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETV RLL A I IIEVGYARASAA+ITKRAGVSVGALFRHF+TMGDFMA
Sbjct 1 MARTQQQRREETVGRLLDACIAIIIEVGYARASAAMITKRAGVSVGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLETFTK+VAEIPADRPAL +AL ILRDIT+G TNAVLYEL++AARTD+KL
Sbjct 61 ATASEVLRRQLETFTKRVAEIPADRPALESALAILRDITSGPTNAVLYELLIAARTDDKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
++TLQ LGQYSAKI+DAARALPGA+SFPEETFPVIVAL+TNVFDGAA+V+G+LPQPE+E
Sbjct 121 RDTLQQELGQYSAKIYDAARALPGAQSFPEETFPVIVALLTNVFDGAAVVQGILPQPEIE 180
Query 181 EQRIPMLTALLTAGL 195
E RIP+LTALLT GL
Sbjct 181 ELRIPVLTALLTGGL 195
>gi|342858237|ref|ZP_08714892.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342133941|gb|EGT87121.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=198
Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/195 (84%), Positives = 177/195 (91%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETV RL+ A I TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct 1 MARTQQQRREETVGRLIDACIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQL++FTK VAEIPADRPAL AAL ILRDIT+G NAV+YEL+VAARTDEKL
Sbjct 61 ATASEVLRRQLDSFTKGVAEIPADRPALEAALGILRDITSGPANAVIYELLVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ETLQ+ LGQY+AKIHDAARALPGAE FPE+TFPV VALMTNVFDGAA+V GVLPQPE+
Sbjct 121 RETLQHELGQYAAKIHDAARALPGAERFPEDTFPVFVALMTNVFDGAAVVEGVLPQPEIA 180
Query 181 EQRIPMLTALLTAGL 195
QRIP+L ALLTA L
Sbjct 181 AQRIPVLMALLTAAL 195
>gi|254821196|ref|ZP_05226197.1| transcriptional regulator, TetR family protein [Mycobacterium
intracellulare ATCC 13950]
Length=197
Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/195 (84%), Positives = 177/195 (91%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETV RL+ A I TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct 1 MARTQQQRREETVGRLIDACIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLE+FTK VAEIPADRPAL AAL ILRDIT+G NAV+YEL+VAARTDEKL
Sbjct 61 ATASEVLRRQLESFTKGVAEIPADRPALEAALGILRDITSGPANAVIYELLVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ETLQ+ LGQY+AKIHDAARALPGAE FPE+TFPV VALMTNVFDGAA+V GVLPQP++
Sbjct 121 RETLQHELGQYAAKIHDAARALPGAERFPEDTFPVFVALMTNVFDGAAVVEGVLPQPDIA 180
Query 181 EQRIPMLTALLTAGL 195
QRIP+L ALLTA L
Sbjct 181 AQRIPVLMALLTAAL 195
>gi|296171456|ref|ZP_06852742.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894142|gb|EFG73902.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=200
Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/194 (83%), Positives = 175/194 (91%), Gaps = 0/194 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETV RLL A IDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct 1 MARTQQQRREETVGRLLDACIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLETFTK+VAEIP DRPAL AAL ILRD+TA +NAVLYEL+VAARTDEKL
Sbjct 61 ATASEVLRRQLETFTKRVAEIPPDRPALEAALGILRDLTAAPSNAVLYELLVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ TLQ+ L QYS KIH+AAR LPGAESFPEETFPV+VA++TNVFDGAA+V GVLPQP++
Sbjct 121 RATLQHELRQYSTKIHEAARTLPGAESFPEETFPVLVAVLTNVFDGAAVVEGVLPQPQIA 180
Query 181 EQRIPMLTALLTAG 194
EQRIPML LL+A
Sbjct 181 EQRIPMLMTLLSAA 194
>gi|118466229|ref|YP_882939.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|254776212|ref|ZP_05217728.1| transcriptional regulator, TetR family protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|118167516|gb|ABK68413.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
Length=197
Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/195 (80%), Positives = 172/195 (89%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLL ASI TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct 1 MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLE+FTK+VAEIPAD+P L A L ILRD+T+G NAV+YEL VAARTDEKL
Sbjct 61 ATASEVLRRQLESFTKRVAEIPADQPVLEAVLGILRDLTSGPVNAVIYELTVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ETLQ+ L QY+AKI + +RALPG E FP +TFPV+VALM NVFDGAA+V GVLPQPE+
Sbjct 121 RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA 180
Query 181 EQRIPMLTALLTAGL 195
QRIP+LTALL A L
Sbjct 181 AQRIPVLTALLNAAL 195
>gi|336459029|gb|EGO37979.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis
S397]
Length=197
Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/195 (79%), Positives = 171/195 (88%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLL ASI TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct 1 MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLE+FTK+VAEIPAD+P L L ILRD+T+G NAV+YEL VAARTDEKL
Sbjct 61 ATASEVLRRQLESFTKRVAEIPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ETLQ+ L QY+AKI + +RALPG E FP +TFPV+VALM NVFDGAA+V GVLPQPE+
Sbjct 121 RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA 180
Query 181 EQRIPMLTALLTAGL 195
+RIP+LTALL A L
Sbjct 181 ARRIPVLTALLNAAL 195
>gi|41409078|ref|NP_961914.1| hypothetical protein MAP2980c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397437|gb|AAS05297.1| hypothetical protein MAP_2980c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=197
Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/195 (78%), Positives = 171/195 (88%), Gaps = 0/195 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLL ASI TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct 1 MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLE+FTK+VA+IPAD+P L L ILRD+T+G NAV+YEL VAARTDEKL
Sbjct 61 ATASEVLRRQLESFTKRVADIPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ETLQ+ L QY+AKI + +RALPG E FP +TFPV+VALM NVFDGAA+V GVLPQPE+
Sbjct 121 RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA 180
Query 181 EQRIPMLTALLTAGL 195
+RIP+LTALL A L
Sbjct 181 ARRIPVLTALLNAAL 195
>gi|333989547|ref|YP_004522161.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
gi|333485516|gb|AEF34908.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
Length=195
Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/191 (76%), Positives = 162/191 (85%), Gaps = 0/191 (0%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQ++RRE TVA LL ASI TI EVGYARASA VI RAGVS GALFRHF+TMGDFMA
Sbjct 1 MARTQRERREATVAGLLDASIATIAEVGYARASAKVIAARAGVSDGALFRHFDTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA EVLRRQLE F KQVAEIPA+ PAL A LT+LRD+TA STNAVLYEL++AARTDEKL
Sbjct 61 ATAQEVLRRQLERFGKQVAEIPAEVPALEAVLTVLRDLTANSTNAVLYELLIAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE 180
+ TLQ+VL +Y AKI +AAR LPGA++FP E FP +VAL+TN FDGAAIVR VLPQPE+E
Sbjct 121 RATLQHVLAEYGAKIGEAARVLPGADTFPPELFPNLVALLTNTFDGAAIVRAVLPQPEIE 180
Query 181 EQRIPMLTALL 191
RIP+L ALL
Sbjct 181 ANRIPLLLALL 191
>gi|289763088|ref|ZP_06522466.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
GM 1503]
gi|289710594|gb|EFD74610.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
GM 1503]
Length=140
Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 132/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
AYEVLRRQ ETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE
Sbjct 8 AYEVLRRQPETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 67
Query 123 TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ 182
TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ
Sbjct 68 TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ 127
Query 183 RIPMLTALLTAGL 195
RIPMLTALLTAGL
Sbjct 128 RIPMLTALLTAGL 140
>gi|118470636|ref|YP_890361.1| HTH-type transcriptional regulator [Mycobacterium smegmatis str.
MC2 155]
gi|118171923|gb|ABK72819.1| putative HTH-type transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
Length=197
Score = 260 bits (665), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 131/196 (67%), Positives = 157/196 (81%), Gaps = 4/196 (2%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
MARTQQQRREETVARLL ASI TII+VGYARASAAVI +RA VS GALFRHF TMGDFMA
Sbjct 1 MARTQQQRREETVARLLDASIQTIIDVGYARASAAVIARRAQVSDGALFRHFPTMGDFMA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
ATA+EV+RRQLE FTK++AEIPA+ P L A LTILRD+T TN V+YEL++AARTDEKL
Sbjct 61 ATAHEVMRRQLEVFTKRIAEIPAEEPPLQAVLTILRDVTGNDTNTVMYELLIAARTDEKL 120
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFP----VIVALMTNVFDGAAIVRGVLPQ 176
+ TLQ VL +Y+A I++ AR +PG E FP+ VAL+ N FDGAAI+R VLPQ
Sbjct 121 RVTLQEVLTEYAANIYETARTIPGFEQFPQNESRHEAMAAVALLVNTFDGAAIIRPVLPQ 180
Query 177 PELEEQRIPMLTALLT 192
P+LE+ RI +L++L +
Sbjct 181 PDLEDARIALLSSLFS 196
>gi|169627783|ref|YP_001701432.1| putative HTH-type transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169239750|emb|CAM60778.1| Putative HTH-type transcriptional regulator [Mycobacterium abscessus]
Length=204
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/189 (50%), Positives = 125/189 (67%), Gaps = 2/189 (1%)
Query 4 TQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATA 63
TQ +RRE T+ARLL + IDTI E+GY+RAS I KRAG+S GALFRHF T+GDFMA A
Sbjct 10 TQAERRESTIARLLDSGIDTIAELGYSRASVQRIAKRAGLSYGALFRHFPTVGDFMAEVA 69
Query 64 YEVLRRQLETFTKQVAEIPADRPA-LPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
E LRRQL T Q + DR A + ++R + NAVLYELMVAARTDE+L+E
Sbjct 70 RETLRRQLATVRAQF-DRAGDRLAEFEDVMAVMRSLKEEPINAVLYELMVAARTDEQLRE 128
Query 123 TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ 182
TLQ + +Y A++ + AR++PG + E +V ++T++FDG A+V+ + P PEL
Sbjct 129 TLQVAVAEYGAQMVELARSVPGTDRLSESELITLVFMITDMFDGEALVQTLRPYPELVAG 188
Query 183 RIPMLTALL 191
R +L LL
Sbjct 189 RDELLAKLL 197
>gi|311743401|ref|ZP_07717208.1| TetR family transcriptional regulator [Aeromicrobium marinum
DSM 15272]
gi|311313469|gb|EFQ83379.1| TetR family transcriptional regulator [Aeromicrobium marinum
DSM 15272]
Length=206
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/191 (37%), Positives = 104/191 (55%), Gaps = 2/191 (1%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ QRR T+ L+ A++ + EVGYAR + A I + AGVS G LFRHF++ D + A
Sbjct 13 RTQAQRRASTMGALVDAAVHLLGEVGYARTTTAEICRHAGVSTGGLFRHFDSRLDVIVAA 72
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
A EV RQ + F + + + L L +LR NA YEL+VAARTD L+E
Sbjct 73 ADEVRSRQFDQFREGLEAL--SEVTLHDGLVLLRRACRAPINAAWYELLVAARTDAALRE 130
Query 123 TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ 182
L + +Y +I + R +P A + P + ++ + ++ DG A+V V PE E+
Sbjct 131 KLAPLTERYHREIMEIGRTMPVAGALPPDELDTLLLSIVHLLDGEALVSVVHGHPEHEDI 190
Query 183 RIPMLTALLTA 193
R+ L +L+
Sbjct 191 RLEQLVRILSG 201
>gi|333921711|ref|YP_004495292.1| putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483932|gb|AEF42492.1| Hypothetical transcriptional regulatory protein [Amycolicicoccus
subflavus DQS3-9A1]
Length=207
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/186 (36%), Positives = 103/186 (56%), Gaps = 1/186 (0%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQQ+RR T+A L+ A+I+ + EVGYARAS + RAG+S GALFRHF T D A
Sbjct 11 RTQQERRGTTIAALVDAAIEVLAEVGYARASVQQVVDRAGLSQGALFRHFATRLDLFAHV 70
Query 63 AYEVLRRQLETFTKQVAEIPADR-PALPAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
A V RQ+ F ++ + A L+ +R IT TN V +ELM ARTD +L+
Sbjct 71 AEVVADRQIAEFRSELGDKDGRGVRDFTAILSTVRRITRSRTNMVWHELMFHARTDAELR 130
Query 122 ETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEE 181
+ + QY + + ++P + FP+ ++ + F G +I R V+P + ++
Sbjct 131 ARMAELSVQYLDAMEELVESIPETQVFPDMIRRALLEFVIGYFTGESIGRQVVPDADADQ 190
Query 182 QRIPML 187
+++ +L
Sbjct 191 RQLELL 196
>gi|338532043|ref|YP_004665377.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
gi|337258139|gb|AEI64299.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
Length=221
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/190 (36%), Positives = 99/190 (53%), Gaps = 3/190 (1%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQQ+RRE T +LL A+I+T++E GYAR + ++KRAG+S GALF HF+T + +AA
Sbjct 17 RTQQERRETTRRKLLDATIETLVEQGYARLTTVEVSKRAGLSQGALFTHFDTKEELLAAA 76
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
+ R ++ + V P+ R + AA+ +L EL VAARTD +L+
Sbjct 77 VEHLFPRLIQDYLAGVGARPSGRDRIAAAVDMLWAAFQRPELQAAIELYVAARTDAELRV 136
Query 123 TLQNVLGQYSAKIHDAARAL-PGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEE 181
L V G + +H AR L P A P+ F IV L + GAA+ P
Sbjct 137 ALAAVDGPHRENLHRVARELFPEASEHPD--FDSIVELALDAVQGAAVGGSARPNDPAHR 194
Query 182 QRIPMLTALL 191
+ + LT +
Sbjct 195 RMLDALTNFM 204
>gi|108763662|ref|YP_635020.1| TetR family transcriptional regulator [Myxococcus xanthus DK
1622]
gi|108467542|gb|ABF92727.1| transcriptional regulator, TetR family [Myxococcus xanthus DK
1622]
Length=221
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/190 (36%), Positives = 99/190 (53%), Gaps = 3/190 (1%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQQ+RRE T +LL A+I+T++E GYAR + ++KRAG+S GALF HF+T + +AA
Sbjct 17 RTQQERRETTRRKLLDATIETLVEQGYARLTTVEVSKRAGLSQGALFTHFDTKEELLAAA 76
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
+ R ++ + V P+ R + AA+ +L EL VAARTD +L+
Sbjct 77 VEHLFPRLIQDYLAGVGARPSGRDRIAAAVDMLWAAFQRPELQAAIELYVAARTDAELRV 136
Query 123 TLQNVLGQYSAKIHDAARAL-PGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEE 181
L V G + +H AR L P A P+ F IV L + GAA+ P
Sbjct 137 ALAAVDGPHRENLHRVARELFPEASEHPD--FDSIVELALDAVQGAAVGGSARPNDPAHR 194
Query 182 QRIPMLTALL 191
+ + LT +
Sbjct 195 RMLDALTHFM 204
>gi|34498880|ref|NP_903095.1| hypothetical protein CV_3425 [Chromobacterium violaceum ATCC
12472]
gi|34104731|gb|AAQ61088.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length=216
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/198 (33%), Positives = 98/198 (50%), Gaps = 10/198 (5%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQQ RRE T+ +L++A+I+ ++E GY S +I RAGVS GALFRHF T + M
Sbjct 5 RTQQSRRESTIGKLVEAAIECLMESGYHGTSVQLICGRAGVSQGALFRHFATKNELMQPV 64
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
+V+ E+ A++P + +++ + + VL EL++AART L++
Sbjct 65 GRKVVDDIFESALGLAAQLPPGMSEEERIIALMKALVMSPRHIVLLELLMAARTTPDLRD 124
Query 123 TLQNVLGQYSAKIHDAARALPGAESFPEET-----FPVIVALMTNVFDGAAIVRGVLPQP 177
LG S D A+ A FP F ++ +MT + G A+ R + P
Sbjct 125 IF---LGSSSTYFRDRFVAMM-ASLFPRYAISTGFFATLLTMMTTM-HGMALYRTLAEHP 179
Query 178 ELEEQRIPMLTALLTAGL 195
E + R L + L A L
Sbjct 180 EGDRMREQWLLSALRAEL 197
>gi|300784384|ref|YP_003764675.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299793898|gb|ADJ44273.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340525804|gb|AEK41009.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=205
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/128 (42%), Positives = 75/128 (59%), Gaps = 6/128 (4%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ QRRE+T LL A+ID ++EVGYAR S I RAGVS GA+ HF + MAA
Sbjct 7 RTQAQRREQTRTALLDATIDCLVEVGYARTSVQEICARAGVSKGAVQHHFTAKAELMAAA 66
Query 63 AYEV---LRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEK 119
+ LRR+L + + E+P + AA+ +L +G+ + + EL VAARTD +
Sbjct 67 VEHLTTKLRRRL---AESLDELPGGGSGVAAAIDLLWAGYSGTLSTAVTELWVAARTDPE 123
Query 120 LKETLQNV 127
L+ ++ V
Sbjct 124 LRAAIRPV 131
>gi|310818224|ref|YP_003950582.1| TetR family transcriptional regulator [Stigmatella aurantiaca
DW4/3-1]
gi|309391296|gb|ADO68755.1| Transcriptional regulator, TetR family [Stigmatella aurantiaca
DW4/3-1]
Length=216
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/170 (33%), Positives = 83/170 (49%), Gaps = 4/170 (2%)
Query 16 LLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVLRRQLETFT 75
LL A+I ++E GYAR + + +RAGVS GA+F HFET + + A + R ++ +
Sbjct 27 LLDATIGVLVEQGYARLTTVEVARRAGVSQGAIFTHFETKAELLVAAVEHLFPRLIQDYL 86
Query 76 KQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQNVLGQYSAKI 135
+P R + AA+ +L + EL VAART+ +L+ L V G + +
Sbjct 87 AGYGGLPGGRDRIGAAVEMLWAVFERPEMLAAVELYVAARTEPELQAALATVEGPHRNNL 146
Query 136 HDAARAL-PGAESFPEETFPVIVALMTNVFDGAAIVRGVLP-QPELEEQR 183
AR L P A P+ F +V L+ + G AI R P P L R
Sbjct 147 VRVARGLFPEAAEHPD--FEAVVELIIDAVQGGAIARVARPHHPALRRMR 194
>gi|54024058|ref|YP_118300.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54015566|dbj|BAD56936.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=221
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/151 (34%), Positives = 78/151 (52%), Gaps = 4/151 (2%)
Query 4 TQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATA 63
TQ+QR ET A+++ A+I+ ++EVGY + ++ KRAGV+ GAL H+ + D +A
Sbjct 20 TQEQRSAETQAKVMDAAIECLLEVGYGETTTQMVAKRAGVTRGALLHHYPSREDLVAGAV 79
Query 64 YEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL--K 121
+ ++ E + A + +P AL +L + G EL+VA+RTD L +
Sbjct 80 RYLAVKRTEEALRTFARLTQGESLIPDALDLLWALYQGPLFTAAIELLVASRTDPALARQ 139
Query 122 ETLQNVLGQYSAKIHDAARALPG--AESFPE 150
+ S K +A AL G AESF E
Sbjct 140 VEAVEEVVVSSIKAAGSAMALSGISAESFNE 170
>gi|336178082|ref|YP_004583457.1| regulatory protein TetR [Frankia symbiont of Datisca glomerata]
gi|334859062|gb|AEH09536.1| regulatory protein TetR [Frankia symbiont of Datisca glomerata]
Length=240
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/187 (32%), Positives = 85/187 (46%), Gaps = 4/187 (2%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFM-AA 61
RT ++R ++ R+L A++D ++ GYA + VI AGVS G L HF + + AA
Sbjct 42 RTHRERTLDSRQRILDATVDCLVRYGYAGTTTLVIQAEAGVSRGRLLHHFPSREVLLVAA 101
Query 62 TAYEVLRR---QLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDE 118
T + V R E F K + E+P L A+ ++ EL AART+E
Sbjct 102 TQHLVTTRLTTTWEHFGKLLDELPDGAARLDRAVEMMWFTFHQPYFWAAMELWTAARTNE 161
Query 119 KLKETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPE 178
L+E L + A I AA G ETFP + L+ GAA+ G P+
Sbjct 162 ALREALAPAERRLGAAIRTAAEGAFGPALASRETFPQVRELLMTSMRGAAMTYGFDPRTA 221
Query 179 LEEQRIP 185
+ +P
Sbjct 222 ASDPHLP 228
>gi|170742796|ref|YP_001771451.1| TetR family transcriptional regulator [Methylobacterium sp. 4-46]
gi|168197070|gb|ACA19017.1| transcriptional regulator, TetR family [Methylobacterium sp.
4-46]
Length=221
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/198 (32%), Positives = 97/198 (49%), Gaps = 11/198 (5%)
Query 1 MARTQQQRREETVA---RLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGD 57
M+RT++Q++ +VA RL++A++D I EVGY A+ I +RA VS GAL HF T D
Sbjct 1 MSRTERQQQARSVATRERLVRAALDEIFEVGYHAATTQQIAERARVSRGALLHHFPTRAD 60
Query 58 FMAATAYEVLRRQLETFTKQVAEIPAD--RPALPAA--LTILRDITAGSTNAVLYELMVA 113
+ A A EVL L T ++ + AD ALP A + L + +G + E++
Sbjct 61 IILA-AMEVL---LADGTAEIKAVSADVRSGALPLADFVEFLWQLFSGRFFYLSMEMITE 116
Query 114 ARTDEKLKETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGV 173
AR D L+ L V+ ++ A + E P +I+ L N+ G + +
Sbjct 117 ARHDPALRRGLIPVVQRFHAALDAIWVEFCDGERRPPREARIILNLTVNLVRGMGVQTVL 176
Query 174 LPQPELEEQRIPMLTALL 191
P+P+ I +LL
Sbjct 177 RPEPDYYRDMIEAWKSLL 194
>gi|333991364|ref|YP_004523978.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
gi|333487332|gb|AEF36724.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
Length=212
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/118 (39%), Positives = 63/118 (54%), Gaps = 0/118 (0%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ +R T LL A++D ++EVG+ + + +RAGVSVGAL HF T + A
Sbjct 8 RTQAERTAGTRRALLDATLDALVEVGFKGTTTTEVARRAGVSVGALQGHFPTKVGLLTAA 67
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
L R++E F +A + L A +L + +G T A +EL VAARTD L
Sbjct 68 IEFSLNRRIEEFEVLMAGLDPAADKLDEAFDLLWSMYSGPTFAATHELWVAARTDPDL 125
>gi|302525611|ref|ZP_07277953.1| predicted protein [Streptomyces sp. AA4]
gi|302434506|gb|EFL06322.1| predicted protein [Streptomyces sp. AA4]
Length=181
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/163 (32%), Positives = 82/163 (51%), Gaps = 20/163 (12%)
Query 16 LLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVLRRQLET-F 74
+L A+ID ++++GY+RAS I RAGVS GA+ +F T + MAA A E L +L T
Sbjct 1 MLDATIDCLVDIGYSRASVQEICTRAGVSKGAVQHYFATKAELMAA-AVEHLTTKLRTQL 59
Query 75 TKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQNV------- 127
+ +P + AA+ +L + +G+ + + EL VAARTD +L+ ++ V
Sbjct 60 AASLGSLPGGASGVAAAIDLLWEGYSGTLSTAVTELWVAARTDPELRAAIRPVDRALGRA 119
Query 128 -LGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAI 169
LG S D P+E ++ L N+ G A+
Sbjct 120 TLGHISEVAGD----------LPKERAEMLFWLTVNLTRGLAL 152
>gi|260426661|ref|ZP_05780640.1| transcriptional regulator, TetR family [Citreicella sp. SE45]
gi|260421153|gb|EEX14404.1| transcriptional regulator, TetR family [Citreicella sp. SE45]
Length=211
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 69/137 (51%), Gaps = 0/137 (0%)
Query 6 QQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYE 65
Q R T +L++A++DTI +VGY +AS ++RAGVS GAL HF D M A+
Sbjct 8 QARSVATREKLIEAALDTIFDVGYEKASTPEFSRRAGVSRGALLHHFPARSDIMVASMET 67
Query 66 VLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQ 125
+LR + A + + L A + L + +G + E + +RTD++L+ +
Sbjct 68 LLRGGTDEIRDMAASVSRNEIGLDAFIDWLHQLFSGRFFYLAVEFINGSRTDDELRARMI 127
Query 126 NVLGQYSAKIHDAARAL 142
V+ ++ + + R
Sbjct 128 PVVREFHEALDEIWRGF 144
>gi|338531327|ref|YP_004664661.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
gi|337257423|gb|AEI63583.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
Length=209
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/135 (35%), Positives = 70/135 (52%), Gaps = 0/135 (0%)
Query 2 ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA 61
AR +Q+R T RL++A+I + E+G+A A+ VI +RAGVS GA HF T D +AA
Sbjct 9 ARQEQERSRVTRQRLMEAAIGALSELGWAGATMTVIAERAGVSRGACQHHFPTRADLVAA 68
Query 62 TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
V +Q+E ++ A +PAD A L +L I +L VAA D +L+
Sbjct 69 AVEYVGHQQVEAVLRKAARLPADARRTEAILHMLAGIYLSPVFTAAVQLWVAAVADAELR 128
Query 122 ETLQNVLGQYSAKIH 136
L + + + H
Sbjct 129 AQLAPLEARVGREFH 143
>gi|108761552|ref|YP_628362.1| TetR family transcriptional regulator [Myxococcus xanthus DK
1622]
gi|108465432|gb|ABF90617.1| transcriptional regulator, TetR family [Myxococcus xanthus DK
1622]
Length=222
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/135 (35%), Positives = 70/135 (52%), Gaps = 0/135 (0%)
Query 2 ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA 61
R +Q+R T RL++A+I + E+G+A A+ VI +RAGVS GA HF T D +AA
Sbjct 22 GRQEQERSRVTRQRLMEAAIGALSELGWAGATMTVIAERAGVSRGACQHHFPTRADLVAA 81
Query 62 TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
V +Q+E ++ A++PAD A L +L I +L VAA D +L+
Sbjct 82 AVEYVGHQQVEAVLRKAAQLPADARRTEAILHMLAGIYLSPVFTAAVQLWVAAVADAELR 141
Query 122 ETLQNVLGQYSAKIH 136
L + + + H
Sbjct 142 AQLAPLEARVGREFH 156
>gi|83950519|ref|ZP_00959252.1| putative transcriptional regulator [Roseovarius nubinhibens ISM]
gi|83838418|gb|EAP77714.1| putative transcriptional regulator [Roseovarius nubinhibens ISM]
Length=212
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/194 (28%), Positives = 96/194 (50%), Gaps = 5/194 (2%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ +R + T L +A+I ++EVGY+ + I KRAGVS GA H+ D + A
Sbjct 10 RTQTERSDRTRKLLHEATIALLMEVGYSNTTTLGIAKRAGVSRGAQTHHYPEKIDLIVAA 69
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALT-ILRDITAGSTNAVLYELMVAARTDEKLK 121
++ E +Q A + A R +L L + + G E++VAAR D L+
Sbjct 70 TEDMFHAFAEGLAEQAALLRAGRLSLDEFLDRVWHRMLDGDWFYASLEIIVAARGDADLR 129
Query 122 ETLQ----NVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQP 177
+ LQ ++ G++ A + + G+++ P+ VI+ ++ N+F G A+ + P
Sbjct 130 QRLQPAILSLHGRFEAIWRETFAPVSGSDAGPDADPAVILNIVMNMFRGMAVQAVLRPDK 189
Query 178 ELEEQRIPMLTALL 191
++ + ++ +L
Sbjct 190 TFLQEMLKVMADIL 203
>gi|134099783|ref|YP_001105444.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291005626|ref|ZP_06563599.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133912406|emb|CAM02519.1| TetR-family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=207
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/198 (29%), Positives = 92/198 (47%), Gaps = 15/198 (7%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
R QQ R T RLL+A++D++ E G+ + +V+ +RAGVS GA HF T D + A
Sbjct 8 RPQQDRSRATRRRLLEAAVDSLAEHGWTGTTVSVVAERAGVSRGAAQHHFPTREDLVTAA 67
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
V ++ +Q+ ++P + + IL + G+ +L VAA +DE L+E
Sbjct 68 VSHVTDARISEIQEQITKLPRGKGRTEGVVDILVRLYTGTVFRAALQLWVAASSDEALRE 127
Query 123 TLQNVLGQYSAKIHDAA-------RALPGAESFPEETFPVIVAL-MTNVF-DGAAIVRGV 173
+ V + + H A ++PG + T + L + NV D + RG+
Sbjct 128 QVVPVEARVGREAHRLAVELLGVDESVPGVRETVQATLDMARGLGLANVLTDDSRRRRGI 187
Query 174 LPQPE------LEEQRIP 185
+ Q LEE R P
Sbjct 188 VRQWARTLDAVLEEGRRP 205
>gi|220921544|ref|YP_002496845.1| TetR family transcriptional regulator [Methylobacterium nodulans
ORS 2060]
gi|219946150|gb|ACL56542.1| transcriptional regulator, TetR family [Methylobacterium nodulans
ORS 2060]
Length=209
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/152 (34%), Positives = 80/152 (53%), Gaps = 8/152 (5%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ+QR ET ARL+ A++D ++E GYAR + A I +RAGV+ GAL HF D + +
Sbjct 10 RTQEQRTAETRARLIAATLDLLMERGYARTTTAEIAERAGVTRGALNHHFTGKDDLVVHS 69
Query 63 AYEVLRRQLETFTKQV---AEIPADRP-ALPAALTILRDITAGSTNAVLYELMVAARTDE 118
+ QL T T ++ AE+ + ALP + L ++ +G + E + AR +
Sbjct 70 ----VEHQLRTSTGEIRALAELVRNGSLALPGFIDRLWEMFSGRLFLITLEHVTEARHNA 125
Query 119 KLKETLQNVLGQYSAKIHDAARALPGAESFPE 150
L+E L V+ ++ A + R L P+
Sbjct 126 ALREALVPVVREFHAALDATWRDLFRGNDAPD 157
>gi|56695487|ref|YP_165836.1| TetR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
gi|56677224|gb|AAV93890.1| transcriptional regulator, TetR family [Ruegeria pomeroyi DSS-3]
Length=209
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/165 (31%), Positives = 83/165 (51%), Gaps = 3/165 (1%)
Query 4 TQQQRRE-ETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
TQQ RR T A++++A+I + +GYA + A I +RAGVS GA+ HF T +AAT
Sbjct 8 TQQDRRSRSTQAKVIRATITCLDRLGYAETTFARIQERAGVSRGAITHHFPTRQALVAAT 67
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
A E+L R L+ ++ A+ + P + + + E++VA RTD +L
Sbjct 68 AMELLSRALDPVERRAAQAASPEPVRDLITRAWGQVVNAAGGRAMVEILVACRTDAELYR 127
Query 123 TLQNVLGQYSAKIH-DAARALPGAESFPEETFPVIVALMTNVFDG 166
L+ L + + ARA GA+ ++ ++ ++ N G
Sbjct 128 LLETRLHDWDHQSRASVARAYVGADQAADDA-ELLWSMTRNFLRG 171
>gi|288924057|ref|ZP_06418117.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
gi|288344594|gb|EFC79063.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
Length=234
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/169 (27%), Positives = 82/169 (49%), Gaps = 4/169 (2%)
Query 5 QQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAY 64
+ ++RE++ R+L A++D +IE GYA A+ I RAG+S G L HF + + A +
Sbjct 13 RDEQREDSRNRILDAAVDCLIEGGYASATTPRIQARAGISRGGLLHHFPSRDALLVAASE 72
Query 65 EVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLY----ELMVAARTDEKL 120
+ RR++ + +I PA P LT + ++ + + + EL AART +++
Sbjct 73 HLARRRIASTAATAEQIARTHPAGPQRLTRMVELLWTTFHEPHWWAALELWTAARTHDEI 132
Query 121 KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAI 169
L+ V + D A+ G + +P + L+ + G A+
Sbjct 133 AVALRPVERHLGTIVRDGVDAMFGPDYTGHPRYPQVRELLVSSMRGLAL 181
>gi|54027417|ref|YP_121659.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54018925|dbj|BAD60295.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=228
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (31%), Positives = 80/171 (47%), Gaps = 10/171 (5%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA 60
M TQ +RR T ARLL A++ +++EVGYA + + RAGV G L HF T +A
Sbjct 1 MPETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLA 60
Query 61 ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
+ R+ E + + A+IP L AA+ + + +G + E V ARTD L
Sbjct 61 GVVEHLAERRFEQLSTEFAQIPPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDL 120
Query 121 KETL----QNVLGQYSAKIHDAARALPGAESFPEET-FPVIVALMTNVFDG 166
+ Q +L Q ++ D RA FP+++ P I + G
Sbjct 121 RAAFLPLEQRLLEQMHLRVRDLFRA-----EFPDDSRVPTITEFTIEIMTG 166
>gi|312138790|ref|YP_004006126.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
gi|311888129|emb|CBH47441.1| putative TetR family transcriptional regulator [Rhodococcus equi
103S]
Length=211
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/123 (38%), Positives = 62/123 (51%), Gaps = 7/123 (5%)
Query 2 ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA 61
+RTQ +R T +LL A+I+ ++EVGYA S+ +TKRAGVS GA F T + A
Sbjct 29 SRTQAERSAATRGKLLDATIELLVEVGYAGTSSQAVTKRAGVSRGAQLHQFPTKESLVVA 88
Query 62 TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
++ R+L AE+ RP L L + G EL VAARTD L
Sbjct 89 AVGHLVDRRL-------AELLRSRPDPDRGLETLCEAFTGPLFYAALELWVAARTDPGLH 141
Query 122 ETL 124
E +
Sbjct 142 EAM 144
>gi|169629478|ref|YP_001703127.1| putative transcriptional regulator TetR [Mycobacterium abscessus
ATCC 19977]
gi|169241445|emb|CAM62473.1| Putative transcriptional regulator, TetR [Mycobacterium abscessus]
Length=238
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (29%), Positives = 92/201 (46%), Gaps = 24/201 (11%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ++R RLL A++D +++ GYA + + +RAGV+ GAL HF++ + + +
Sbjct 21 RTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAGVTRGALVHHFQSKSELLGES 80
Query 63 AYEVLRRQLETFTKQVAEIPADRPA--LPAALTILRDITAGSTNAVLYELMVAARTDEKL 120
+ RQ + ++ + D A + L L + GS EL +AARTD +L
Sbjct 81 VRHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQGSMFIATMELWIAARTDAEL 140
Query 121 KETLQN----VLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVL-- 174
+ V+ Q+S L + S +E VI + D VRG+L
Sbjct 141 SAQMDQFEFIVMQQFS--------TLGQSVSQTDEELRVIRNITLTAMDA---VRGILVN 189
Query 175 ----PQPELEEQRIPMLTALL 191
PQ E+ +QR A+L
Sbjct 190 SMTAPQ-EVRDQRWARAKAML 209
>gi|325676512|ref|ZP_08156190.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325552690|gb|EGD22374.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=191
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/123 (38%), Positives = 62/123 (51%), Gaps = 7/123 (5%)
Query 2 ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA 61
+RTQ +R T +LL A+I+ ++EVGYA S+ +TKRAGVS GA F T + A
Sbjct 9 SRTQAERSAATRGKLLDATIELLVEVGYAGTSSQAVTKRAGVSRGAQLHQFPTKESLVVA 68
Query 62 TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
++ R+L AE+ RP L L + G EL VAARTD L
Sbjct 69 AVGHLVDRRL-------AELLRSRPDPDRGLETLCEAFTGPLFYAALELWVAARTDPGLH 121
Query 122 ETL 124
E +
Sbjct 122 EAM 124
>gi|288917009|ref|ZP_06411380.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
gi|288351549|gb|EFC85755.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
Length=212
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/165 (26%), Positives = 77/165 (47%), Gaps = 4/165 (2%)
Query 9 REETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVLR 68
RE++ R+L A++D ++E GY A+ I KRAG+S G L HF + + A + + R
Sbjct 17 REDSRNRILDAAVDCLVEGGYVNATTPRIQKRAGISRGGLLHHFPSRDALLVAASEHLAR 76
Query 69 RQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLY----ELMVAARTDEKLKETL 124
R++ + +I P P LT + ++ + + + EL AART++++ L
Sbjct 77 RRIAISVARAEQIARSHPVGPERLTQMVELLWSTFHEPHWWAALELWTAARTNDEIATAL 136
Query 125 QNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAI 169
+ + A A+ G +P + L+ + G A+
Sbjct 137 RPTERHLGGIVRGAVDAMFGPYYVGHPRYPQVRELLLSSMRGLAL 181
>gi|169627481|ref|YP_001701130.1| TetR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169239448|emb|CAM60476.1| Putative transcriptional regulator, TetR family [Mycobacterium
abscessus]
Length=203
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/119 (31%), Positives = 65/119 (55%), Gaps = 0/119 (0%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ++R ARLL+A+ID ++E GY+ + + I RAG + GAL HF++ + MA +
Sbjct 6 RTQEERSAAMRARLLEATIDCLVEFGYSGTTTSRIASRAGATRGALIHHFQSKSELMAES 65
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
+ ++ + +++ + + L +L I G + EL++AART+ L+
Sbjct 66 VRHLAFKRTQAVLEELMAMDQSADPIERYLDVLWRIHQGPLFIAVVELLIAARTEPDLR 124
>gi|269125808|ref|YP_003299178.1| TetR family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268310766|gb|ACY97140.1| transcriptional regulator, TetR family [Thermomonospora curvata
DSM 43183]
Length=228
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/158 (33%), Positives = 80/158 (51%), Gaps = 11/158 (6%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ++RR T ARLL A+ + + ++G+A S +++RAGVS GA H+ T +AA
Sbjct 28 RTQEERRSATQARLLDATAEALADLGWAGLSTTEVSRRAGVSRGAQQHHYPTKMSLVAAA 87
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
+L R + + AE+P ++ + AL + ++ L EL +A RTDE L++
Sbjct 88 LEHLLSRLRAEYEQAYAELPEEQRNIEGALDLFWEMLRQPPAIALLELALAGRTDESLRD 147
Query 123 TLQNVLGQYSAKIHDAARALPG---AESFPEETFPVIV 157
SA +H+ + E FPE P IV
Sbjct 148 --------LSADLHERVIVIIKEVFHELFPESLPPEIV 177
>gi|343928173|ref|ZP_08767628.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343761871|dbj|GAA14554.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=193
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/197 (30%), Positives = 93/197 (48%), Gaps = 19/197 (9%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ +R T R+L A+++ ++EVGYA + + +RAGVS GAL HF T + A
Sbjct 11 RTQAERTAATRTRVLDAAVEALVEVGYAATTTQEVNRRAGVSRGALLHHFPTRESLVVAA 70
Query 63 AYEVLRRQLETFTKQVAEIPADRPAL-PAALTILRDITAGSTNAVLYELMVAARTDEKLK 121
++ R+LE RP L +L + +G EL VAAR D +L+
Sbjct 71 VGHLVDRRLEEVLS--------RPRTGDEGLEVLIESFSGPLFDAALELWVAARCDVELR 122
Query 122 ETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE- 180
L + ++ DA A+ AE F + P + L + G A+ R +L P+ +
Sbjct 123 TALIPL----EQRVSDAL-AVGCAELFGDRYTPAELELSIELARGLAVSR-ILRSPDADR 176
Query 181 ---EQRIPMLTALLTAG 194
++ +P+ LL G
Sbjct 177 EYLDRLLPIWKDLLNRG 193
>gi|111021280|ref|YP_704252.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110820810|gb|ABG96094.1| probable transcriptional regulator, TetR family protein [Rhodococcus
jostii RHA1]
Length=197
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (53%), Gaps = 7/120 (5%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ +R +LL A++D+++E+GYAR + I +RAGVS GA HF T + A
Sbjct 15 RTQAERTAAMRTKLLDAAVDSLVELGYARTTTQGIARRAGVSRGAQLHHFPTKESLVVAA 74
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
++ +++E A++ A R + +L D +G EL VAARTD L E
Sbjct 75 VEHLVDKRMEEIL--AADVDAGR-----GVDVLADAFSGPLFYAALELWVAARTDPALYE 127
>gi|226363622|ref|YP_002781404.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
gi|226242111|dbj|BAH52459.1| putative TetR family transcriptional regulator [Rhodococcus opacus
B4]
Length=194
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (36%), Positives = 63/120 (53%), Gaps = 7/120 (5%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
RTQ +R +LL A++D+++E+GYAR + I +RAGVS GA HF T + A
Sbjct 12 RTQAERTAAMRTKLLDAAVDSLVELGYARTTTQGIARRAGVSRGAQLHHFPTKESLVVAA 71
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
++ +++E AE+ A R + +L D +G EL VAARTD L E
Sbjct 72 VEHLVDKRMEEIL--AAEVDAGR-----GVEVLADAFSGPLFYAALELWVAARTDPVLFE 124
>gi|334343327|ref|YP_004555931.1| regulatory protein TetR [Sphingobium chlorophenolicum L-1]
gi|334104002|gb|AEG51425.1| regulatory protein TetR [Sphingobium chlorophenolicum L-1]
Length=259
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (34%), Positives = 58/120 (49%), Gaps = 0/120 (0%)
Query 8 RREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVL 67
RRE T R+ +A+ID + E GYA AS + +RAGVS GAL + F T A L
Sbjct 59 RREITRQRVFEAAIDCLHETGYAGASTLAVARRAGVSRGALMKQFPTKATLFADLVEHFL 118
Query 68 RRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQNV 127
+ E + + PA P + A + ++ + E+M+ AR D +L E L V
Sbjct 119 DQMREETLNHIRKFPAGLPRIMARVDYAWELYKKPKALAIVEVMLGARGDPELSERLAQV 178
>gi|146275755|ref|YP_001165915.1| TetR family transcriptional regulator [Novosphingobium aromaticivorans
DSM 12444]
gi|145322446|gb|ABP64389.1| transcriptional regulator, TetR family [Novosphingobium aromaticivorans
DSM 12444]
Length=224
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/152 (33%), Positives = 76/152 (50%), Gaps = 10/152 (6%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
R QQ++ T ++L+A++D ++E GYA + A + +RA VS GA+ HF T D +AA
Sbjct 26 RWQQRKSARTREKMLEAAVDCLVEGGYAGLTTAQVAERAQVSRGAMHHHFATRMDLVAAV 85
Query 63 AYEVLRRQLETFTKQ-VAEIPADRPALPAALTI---LRDITAGSTNAVLYELMVAARTDE 118
+ +++ F +A + R AL L R + A L EL VAARTD
Sbjct 86 VEHIFYQRMRVFLDDYIAAMAQSRGALLIDLATDAHWRSVQTREYAAYL-ELAVAARTDH 144
Query 119 KLKETLQNVLGQYSAKIHDAARALPGAESFPE 150
+L N + +A+ +D ESFP+
Sbjct 145 EL-----NAAFEPAARRYDEVWTAEMIESFPQ 171
>gi|89067670|ref|ZP_01155124.1| putative transcriptional regulator [Oceanicola granulosus HTCC2516]
gi|89046640|gb|EAR52695.1| putative transcriptional regulator [Oceanicola granulosus HTCC2516]
Length=216
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (31%), Positives = 66/133 (50%), Gaps = 0/133 (0%)
Query 3 RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT 62
R Q R T +L+QA+++ I +VG+ AS ++RAGVS GAL HF T D + A
Sbjct 13 RPAQARSATTRRKLVQAALEVIYDVGFKSASTPEFSRRAGVSRGALLHHFPTRSDIIVAA 72
Query 63 AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE 122
E+LR + + A +L + L + +G + E + ARTD +L+
Sbjct 73 MEELLRENTREIRQLAGAVAAQEISLGEFVEFLWQMFSGRFFFLSLEFINEARTDSELRG 132
Query 123 TLQNVLGQYSAKI 135
++ V+ + A +
Sbjct 133 RMKPVVRDFHAAL 145
>gi|226303920|ref|YP_002763878.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226183035|dbj|BAH31139.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=194
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/118 (39%), Positives = 62/118 (53%), Gaps = 9/118 (7%)
Query 1 MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDF-M 59
++RTQ +R RLL A++++++E+GYAR S I +RAGVS G HF T +
Sbjct 10 VSRTQAERTAAMRGRLLDAAVESLVELGYARTSTQEIARRAGVSRGTQLHHFPTKESLVV 69
Query 60 AATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTD 117
AA Y V +R E T +V DR L +L D +G EL VAARTD
Sbjct 70 AAVEYLVDKRLEEILTAEV-----DR---GRGLEVLADAFSGPLFYAALELWVAARTD 119
Lambda K H
0.320 0.132 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 202202242956
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40