BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2912c

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610049|ref|NP_217428.1|  TetR family transcriptional regulat...   389    2e-106
gi|340627902|ref|YP_004746354.1|  putative transcriptional regula...   388    3e-106
gi|254365551|ref|ZP_04981596.1|  hypothetical transcriptional reg...   385    2e-105
gi|183981809|ref|YP_001850100.1|  TetR family transcriptional reg...   342    2e-92 
gi|118617618|ref|YP_905950.1|  TetR family transcriptional regula...   336    1e-90 
gi|240170566|ref|ZP_04749225.1|  putative transcriptional regulat...   332    2e-89 
gi|342858237|ref|ZP_08714892.1|  TetR family transcriptional regu...   326    1e-87 
gi|254821196|ref|ZP_05226197.1|  transcriptional regulator, TetR ...   326    1e-87 
gi|296171456|ref|ZP_06852742.1|  TetR family transcriptional regu...   322    1e-86 
gi|118466229|ref|YP_882939.1|  TetR family transcriptional regula...   309    1e-82 
gi|336459029|gb|EGO37979.1|  transcriptional regulator [Mycobacte...   305    2e-81 
gi|41409078|ref|NP_961914.1|  hypothetical protein MAP2980c [Myco...   304    4e-81 
gi|333989547|ref|YP_004522161.1|  TetR family transcriptional reg...   283    1e-74 
gi|289763088|ref|ZP_06522466.1|  TetR family transcriptional regu...   263    8e-69 
gi|118470636|ref|YP_890361.1|  HTH-type transcriptional regulator...   260    7e-68 
gi|169627783|ref|YP_001701432.1|  putative HTH-type transcription...   171    4e-41 
gi|311743401|ref|ZP_07717208.1|  TetR family transcriptional regu...   119    3e-25 
gi|333921711|ref|YP_004495292.1|  putative transcriptional regula...   111    6e-23 
gi|338532043|ref|YP_004665377.1|  TetR family transcriptional reg...   101    7e-20 
gi|108763662|ref|YP_635020.1|  TetR family transcriptional regula...   100    9e-20 
gi|34498880|ref|NP_903095.1|  hypothetical protein CV_3425 [Chrom...  88.2    6e-16 
gi|300784384|ref|YP_003764675.1|  TetR family transcriptional reg...  85.9    3e-15 
gi|310818224|ref|YP_003950582.1|  TetR family transcriptional reg...  80.1    1e-13 
gi|54024058|ref|YP_118300.1|  putative transcriptional regulator ...  71.6    5e-11 
gi|336178082|ref|YP_004583457.1|  regulatory protein TetR [Franki...  71.6    5e-11 
gi|170742796|ref|YP_001771451.1|  TetR family transcriptional reg...  70.9    1e-10 
gi|333991364|ref|YP_004523978.1|  TetR family transcriptional reg...  70.5    1e-10 
gi|302525611|ref|ZP_07277953.1|  predicted protein [Streptomyces ...  70.1    1e-10 
gi|260426661|ref|ZP_05780640.1|  transcriptional regulator, TetR ...  69.7    2e-10 
gi|338531327|ref|YP_004664661.1|  TetR family transcriptional reg...  69.7    2e-10 
gi|108761552|ref|YP_628362.1|  TetR family transcriptional regula...  69.7    2e-10 
gi|83950519|ref|ZP_00959252.1|  putative transcriptional regulato...  69.7    2e-10 
gi|134099783|ref|YP_001105444.1|  TetR family transcriptional reg...  69.3    3e-10 
gi|220921544|ref|YP_002496845.1|  TetR family transcriptional reg...  68.9    4e-10 
gi|56695487|ref|YP_165836.1|  TetR family transcriptional regulat...  68.6    4e-10 
gi|288924057|ref|ZP_06418117.1|  transcriptional regulator, TetR ...  68.6    5e-10 
gi|54027417|ref|YP_121659.1|  putative transcriptional regulator ...  67.4    1e-09 
gi|312138790|ref|YP_004006126.1|  tetr family transcriptional reg...  67.0    1e-09 
gi|169629478|ref|YP_001703127.1|  putative transcriptional regula...  66.6    2e-09 
gi|325676512|ref|ZP_08156190.1|  TetR family transcriptional regu...  66.2    2e-09 
gi|288917009|ref|ZP_06411380.1|  transcriptional regulator, TetR ...  65.1    5e-09 
gi|169627481|ref|YP_001701130.1|  TetR family transcriptional reg...  65.1    6e-09 
gi|269125808|ref|YP_003299178.1|  TetR family transcriptional reg...  64.3    9e-09 
gi|343928173|ref|ZP_08767628.1|  putative TetR family transcripti...  63.5    1e-08 
gi|111021280|ref|YP_704252.1|  TetR family transcriptional regula...  63.5    1e-08 
gi|226363622|ref|YP_002781404.1|  TetR family transcriptional reg...  63.5    2e-08 
gi|334343327|ref|YP_004555931.1|  regulatory protein TetR [Sphing...  63.5    2e-08 
gi|146275755|ref|YP_001165915.1|  TetR family transcriptional reg...  63.5    2e-08 
gi|89067670|ref|ZP_01155124.1|  putative transcriptional regulato...  63.2    2e-08 
gi|226303920|ref|YP_002763878.1|  TetR family transcriptional reg...  63.2    2e-08 


>gi|15610049|ref|NP_217428.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|15842455|ref|NP_337492.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31794088|ref|NP_856581.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 76 more sequence titles
 Length=195

 Score =  389 bits (998),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL
Sbjct  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE
Sbjct  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180

Query  181  EQRIPMLTALLTAGL  195
            EQRIPMLTALLTAGL
Sbjct  181  EQRIPMLTALLTAGL  195


>gi|340627902|ref|YP_004746354.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340006092|emb|CCC45264.1| putative transcriptional regulatory protein (probably TETR-family) 
[Mycobacterium canettii CIPT 140010059]
Length=195

 Score =  388 bits (996),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL
Sbjct  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            KETLQNVLGQYSAKIHDAARALPGAESFPEETFPV+VALMTNVFDGAAIVRGVLPQPELE
Sbjct  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVVVALMTNVFDGAAIVRGVLPQPELE  180

Query  181  EQRIPMLTALLTAGL  195
            EQRIPMLTALLTAGL
Sbjct  181  EQRIPMLTALLTAGL  195


>gi|254365551|ref|ZP_04981596.1| hypothetical transcriptional regulatory protein (probably tetR-family) 
[Mycobacterium tuberculosis str. Haarlem]
 gi|134151064|gb|EBA43109.1| hypothetical transcriptional regulatory protein (probably tetR-family) 
[Mycobacterium tuberculosis str. Haarlem]
Length=195

 Score =  385 bits (988),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 194/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATAYEVLRRQLETFTKQVAEIPADR ALPAALTILRDITAGSTNAVLYELMVAARTDEKL
Sbjct  61   ATAYEVLRRQLETFTKQVAEIPADRRALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE
Sbjct  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180

Query  181  EQRIPMLTALLTAGL  195
            EQRIPMLTALLTAGL
Sbjct  181  EQRIPMLTALLTAGL  195


>gi|183981809|ref|YP_001850100.1| TetR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183175135|gb|ACC40245.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium 
marinum M]
Length=200

 Score =  342 bits (876),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 168/195 (87%), Positives = 184/195 (95%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLLQASIDTI+EVGYARASAA+ITKRAGVSVGALFRHFETMGDFMA
Sbjct  1    MARTQQQRREETVARLLQASIDTIVEVGYARASAAIITKRAGVSVGALFRHFETMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATAYEVLRRQL+ FTKQVAEIPADRPAL AAL ILRDITAG+TNAVLYELM+AARTD+KL
Sbjct  61   ATAYEVLRRQLDIFTKQVAEIPADRPALEAALAILRDITAGATNAVLYELMIAARTDDKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            KETLQ+VLGQY AKI+DAAR LPGAE FPEETFP IVA++TNVFDGAAIV  VLPQP+++
Sbjct  121  KETLQHVLGQYRAKIYDAARTLPGAEGFPEETFPAIVAVLTNVFDGAAIVGAVLPQPDID  180

Query  181  EQRIPMLTALLTAGL  195
            EQRIP+L ALL+A +
Sbjct  181  EQRIPVLAALLSAAV  195


>gi|118617618|ref|YP_905950.1| TetR family transcriptional regulator [Mycobacterium ulcerans 
Agy99]
 gi|118569728|gb|ABL04479.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium 
ulcerans Agy99]
Length=200

 Score =  336 bits (861),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 166/195 (86%), Positives = 182/195 (94%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLLQASIDTI+ VGYARASAA+ITKRAGVSVGALFRHFETMGDFMA
Sbjct  1    MARTQQQRREETVARLLQASIDTIVGVGYARASAAIITKRAGVSVGALFRHFETMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATAYEVLRRQL+ FTKQVAEIPADRPAL AAL ILRDITAG+TNAVLYELM+AARTD+KL
Sbjct  61   ATAYEVLRRQLDIFTKQVAEIPADRPALEAALAILRDITAGATNAVLYELMIAARTDDKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            KETLQ+VLGQY AKI+DAAR LPGAE FPE TFP IVA++TNVFDGAAIV  VLPQP+++
Sbjct  121  KETLQHVLGQYRAKIYDAARTLPGAEGFPEGTFPAIVAVLTNVFDGAAIVGAVLPQPDID  180

Query  181  EQRIPMLTALLTAGL  195
            EQRIP+L ALL+A +
Sbjct  181  EQRIPVLAALLSAAV  195


>gi|240170566|ref|ZP_04749225.1| putative transcriptional regulatory protein [Mycobacterium kansasii 
ATCC 12478]
Length=195

 Score =  332 bits (851),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 164/195 (85%), Positives = 182/195 (94%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETV RLL A I  IIEVGYARASAA+ITKRAGVSVGALFRHF+TMGDFMA
Sbjct  1    MARTQQQRREETVGRLLDACIAIIIEVGYARASAAMITKRAGVSVGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLETFTK+VAEIPADRPAL +AL ILRDIT+G TNAVLYEL++AARTD+KL
Sbjct  61   ATASEVLRRQLETFTKRVAEIPADRPALESALAILRDITSGPTNAVLYELLIAARTDDKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            ++TLQ  LGQYSAKI+DAARALPGA+SFPEETFPVIVAL+TNVFDGAA+V+G+LPQPE+E
Sbjct  121  RDTLQQELGQYSAKIYDAARALPGAQSFPEETFPVIVALLTNVFDGAAVVQGILPQPEIE  180

Query  181  EQRIPMLTALLTAGL  195
            E RIP+LTALLT GL
Sbjct  181  ELRIPVLTALLTGGL  195


>gi|342858237|ref|ZP_08714892.1| TetR family transcriptional regulator [Mycobacterium colombiense 
CECT 3035]
 gi|342133941|gb|EGT87121.1| TetR family transcriptional regulator [Mycobacterium colombiense 
CECT 3035]
Length=198

 Score =  326 bits (836),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 163/195 (84%), Positives = 177/195 (91%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETV RL+ A I TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct  1    MARTQQQRREETVGRLIDACIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQL++FTK VAEIPADRPAL AAL ILRDIT+G  NAV+YEL+VAARTDEKL
Sbjct  61   ATASEVLRRQLDSFTKGVAEIPADRPALEAALGILRDITSGPANAVIYELLVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            +ETLQ+ LGQY+AKIHDAARALPGAE FPE+TFPV VALMTNVFDGAA+V GVLPQPE+ 
Sbjct  121  RETLQHELGQYAAKIHDAARALPGAERFPEDTFPVFVALMTNVFDGAAVVEGVLPQPEIA  180

Query  181  EQRIPMLTALLTAGL  195
             QRIP+L ALLTA L
Sbjct  181  AQRIPVLMALLTAAL  195


>gi|254821196|ref|ZP_05226197.1| transcriptional regulator, TetR family protein [Mycobacterium 
intracellulare ATCC 13950]
Length=197

 Score =  326 bits (835),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 163/195 (84%), Positives = 177/195 (91%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETV RL+ A I TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct  1    MARTQQQRREETVGRLIDACIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLE+FTK VAEIPADRPAL AAL ILRDIT+G  NAV+YEL+VAARTDEKL
Sbjct  61   ATASEVLRRQLESFTKGVAEIPADRPALEAALGILRDITSGPANAVIYELLVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            +ETLQ+ LGQY+AKIHDAARALPGAE FPE+TFPV VALMTNVFDGAA+V GVLPQP++ 
Sbjct  121  RETLQHELGQYAAKIHDAARALPGAERFPEDTFPVFVALMTNVFDGAAVVEGVLPQPDIA  180

Query  181  EQRIPMLTALLTAGL  195
             QRIP+L ALLTA L
Sbjct  181  AQRIPVLMALLTAAL  195


>gi|296171456|ref|ZP_06852742.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894142|gb|EFG73902.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=200

 Score =  322 bits (826),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 161/194 (83%), Positives = 175/194 (91%), Gaps = 0/194 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETV RLL A IDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA
Sbjct  1    MARTQQQRREETVGRLLDACIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLETFTK+VAEIP DRPAL AAL ILRD+TA  +NAVLYEL+VAARTDEKL
Sbjct  61   ATASEVLRRQLETFTKRVAEIPPDRPALEAALGILRDLTAAPSNAVLYELLVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            + TLQ+ L QYS KIH+AAR LPGAESFPEETFPV+VA++TNVFDGAA+V GVLPQP++ 
Sbjct  121  RATLQHELRQYSTKIHEAARTLPGAESFPEETFPVLVAVLTNVFDGAAVVEGVLPQPQIA  180

Query  181  EQRIPMLTALLTAG  194
            EQRIPML  LL+A 
Sbjct  181  EQRIPMLMTLLSAA  194


>gi|118466229|ref|YP_882939.1| TetR family transcriptional regulator [Mycobacterium avium 104]
 gi|254776212|ref|ZP_05217728.1| transcriptional regulator, TetR family protein [Mycobacterium 
avium subsp. avium ATCC 25291]
 gi|118167516|gb|ABK68413.1| transcriptional regulator, TetR family protein [Mycobacterium 
avium 104]
Length=197

 Score =  309 bits (792),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 155/195 (80%), Positives = 172/195 (89%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLL ASI TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct  1    MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLE+FTK+VAEIPAD+P L A L ILRD+T+G  NAV+YEL VAARTDEKL
Sbjct  61   ATASEVLRRQLESFTKRVAEIPADQPVLEAVLGILRDLTSGPVNAVIYELTVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            +ETLQ+ L QY+AKI + +RALPG E FP +TFPV+VALM NVFDGAA+V GVLPQPE+ 
Sbjct  121  RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA  180

Query  181  EQRIPMLTALLTAGL  195
             QRIP+LTALL A L
Sbjct  181  AQRIPVLTALLNAAL  195


>gi|336459029|gb|EGO37979.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=197

 Score =  305 bits (782),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 153/195 (79%), Positives = 171/195 (88%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLL ASI TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct  1    MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLE+FTK+VAEIPAD+P L   L ILRD+T+G  NAV+YEL VAARTDEKL
Sbjct  61   ATASEVLRRQLESFTKRVAEIPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            +ETLQ+ L QY+AKI + +RALPG E FP +TFPV+VALM NVFDGAA+V GVLPQPE+ 
Sbjct  121  RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA  180

Query  181  EQRIPMLTALLTAGL  195
             +RIP+LTALL A L
Sbjct  181  ARRIPVLTALLNAAL  195


>gi|41409078|ref|NP_961914.1| hypothetical protein MAP2980c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397437|gb|AAS05297.1| hypothetical protein MAP_2980c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=197

 Score =  304 bits (779),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 152/195 (78%), Positives = 171/195 (88%), Gaps = 0/195 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLL ASI TIIEVGYARASAAVITKRAGVSVGALFRHF+TMGDFMA
Sbjct  1    MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLE+FTK+VA+IPAD+P L   L ILRD+T+G  NAV+YEL VAARTDEKL
Sbjct  61   ATASEVLRRQLESFTKRVADIPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            +ETLQ+ L QY+AKI + +RALPG E FP +TFPV+VALM NVFDGAA+V GVLPQPE+ 
Sbjct  121  RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA  180

Query  181  EQRIPMLTALLTAGL  195
             +RIP+LTALL A L
Sbjct  181  ARRIPVLTALLNAAL  195


>gi|333989547|ref|YP_004522161.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333485516|gb|AEF34908.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
Length=195

 Score =  283 bits (723),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 144/191 (76%), Positives = 162/191 (85%), Gaps = 0/191 (0%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQ++RRE TVA LL ASI TI EVGYARASA VI  RAGVS GALFRHF+TMGDFMA
Sbjct  1    MARTQRERREATVAGLLDASIATIAEVGYARASAKVIAARAGVSDGALFRHFDTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA EVLRRQLE F KQVAEIPA+ PAL A LT+LRD+TA STNAVLYEL++AARTDEKL
Sbjct  61   ATAQEVLRRQLERFGKQVAEIPAEVPALEAVLTVLRDLTANSTNAVLYELLIAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE  180
            + TLQ+VL +Y AKI +AAR LPGA++FP E FP +VAL+TN FDGAAIVR VLPQPE+E
Sbjct  121  RATLQHVLAEYGAKIGEAARVLPGADTFPPELFPNLVALLTNTFDGAAIVRAVLPQPEIE  180

Query  181  EQRIPMLTALL  191
              RIP+L ALL
Sbjct  181  ANRIPLLLALL  191


>gi|289763088|ref|ZP_06522466.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
GM 1503]
 gi|289710594|gb|EFD74610.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
GM 1503]
Length=140

 Score =  263 bits (673),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 132/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
            AYEVLRRQ ETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE
Sbjct  8    AYEVLRRQPETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  67

Query  123  TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ  182
            TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ
Sbjct  68   TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ  127

Query  183  RIPMLTALLTAGL  195
            RIPMLTALLTAGL
Sbjct  128  RIPMLTALLTAGL  140


>gi|118470636|ref|YP_890361.1| HTH-type transcriptional regulator [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171923|gb|ABK72819.1| putative HTH-type transcriptional regulator [Mycobacterium smegmatis 
str. MC2 155]
Length=197

 Score =  260 bits (665),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 131/196 (67%), Positives = 157/196 (81%), Gaps = 4/196 (2%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            MARTQQQRREETVARLL ASI TII+VGYARASAAVI +RA VS GALFRHF TMGDFMA
Sbjct  1    MARTQQQRREETVARLLDASIQTIIDVGYARASAAVIARRAQVSDGALFRHFPTMGDFMA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
            ATA+EV+RRQLE FTK++AEIPA+ P L A LTILRD+T   TN V+YEL++AARTDEKL
Sbjct  61   ATAHEVMRRQLEVFTKRIAEIPAEEPPLQAVLTILRDVTGNDTNTVMYELLIAARTDEKL  120

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFP----VIVALMTNVFDGAAIVRGVLPQ  176
            + TLQ VL +Y+A I++ AR +PG E FP+          VAL+ N FDGAAI+R VLPQ
Sbjct  121  RVTLQEVLTEYAANIYETARTIPGFEQFPQNESRHEAMAAVALLVNTFDGAAIIRPVLPQ  180

Query  177  PELEEQRIPMLTALLT  192
            P+LE+ RI +L++L +
Sbjct  181  PDLEDARIALLSSLFS  196


>gi|169627783|ref|YP_001701432.1| putative HTH-type transcriptional regulator [Mycobacterium abscessus 
ATCC 19977]
 gi|169239750|emb|CAM60778.1| Putative HTH-type transcriptional regulator [Mycobacterium abscessus]
Length=204

 Score =  171 bits (434),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 94/189 (50%), Positives = 125/189 (67%), Gaps = 2/189 (1%)

Query  4    TQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATA  63
            TQ +RRE T+ARLL + IDTI E+GY+RAS   I KRAG+S GALFRHF T+GDFMA  A
Sbjct  10   TQAERRESTIARLLDSGIDTIAELGYSRASVQRIAKRAGLSYGALFRHFPTVGDFMAEVA  69

Query  64   YEVLRRQLETFTKQVAEIPADRPA-LPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
             E LRRQL T   Q  +   DR A     + ++R +     NAVLYELMVAARTDE+L+E
Sbjct  70   RETLRRQLATVRAQF-DRAGDRLAEFEDVMAVMRSLKEEPINAVLYELMVAARTDEQLRE  128

Query  123  TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ  182
            TLQ  + +Y A++ + AR++PG +   E     +V ++T++FDG A+V+ + P PEL   
Sbjct  129  TLQVAVAEYGAQMVELARSVPGTDRLSESELITLVFMITDMFDGEALVQTLRPYPELVAG  188

Query  183  RIPMLTALL  191
            R  +L  LL
Sbjct  189  RDELLAKLL  197


>gi|311743401|ref|ZP_07717208.1| TetR family transcriptional regulator [Aeromicrobium marinum 
DSM 15272]
 gi|311313469|gb|EFQ83379.1| TetR family transcriptional regulator [Aeromicrobium marinum 
DSM 15272]
Length=206

 Score =  119 bits (297),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 70/191 (37%), Positives = 104/191 (55%), Gaps = 2/191 (1%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ QRR  T+  L+ A++  + EVGYAR + A I + AGVS G LFRHF++  D + A 
Sbjct  13   RTQAQRRASTMGALVDAAVHLLGEVGYARTTTAEICRHAGVSTGGLFRHFDSRLDVIVAA  72

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
            A EV  RQ + F + +  +      L   L +LR       NA  YEL+VAARTD  L+E
Sbjct  73   ADEVRSRQFDQFREGLEAL--SEVTLHDGLVLLRRACRAPINAAWYELLVAARTDAALRE  130

Query  123  TLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEEQ  182
             L  +  +Y  +I +  R +P A + P +    ++  + ++ DG A+V  V   PE E+ 
Sbjct  131  KLAPLTERYHREIMEIGRTMPVAGALPPDELDTLLLSIVHLLDGEALVSVVHGHPEHEDI  190

Query  183  RIPMLTALLTA  193
            R+  L  +L+ 
Sbjct  191  RLEQLVRILSG  201


>gi|333921711|ref|YP_004495292.1| putative transcriptional regulator [Amycolicicoccus subflavus 
DQS3-9A1]
 gi|333483932|gb|AEF42492.1| Hypothetical transcriptional regulatory protein [Amycolicicoccus 
subflavus DQS3-9A1]
Length=207

 Score =  111 bits (277),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 66/186 (36%), Positives = 103/186 (56%), Gaps = 1/186 (0%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQQ+RR  T+A L+ A+I+ + EVGYARAS   +  RAG+S GALFRHF T  D  A  
Sbjct  11   RTQQERRGTTIAALVDAAIEVLAEVGYARASVQQVVDRAGLSQGALFRHFATRLDLFAHV  70

Query  63   AYEVLRRQLETFTKQVAEIPADR-PALPAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
            A  V  RQ+  F  ++ +          A L+ +R IT   TN V +ELM  ARTD +L+
Sbjct  71   AEVVADRQIAEFRSELGDKDGRGVRDFTAILSTVRRITRSRTNMVWHELMFHARTDAELR  130

Query  122  ETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEE  181
              +  +  QY   + +   ++P  + FP+     ++  +   F G +I R V+P  + ++
Sbjct  131  ARMAELSVQYLDAMEELVESIPETQVFPDMIRRALLEFVIGYFTGESIGRQVVPDADADQ  190

Query  182  QRIPML  187
            +++ +L
Sbjct  191  RQLELL  196


>gi|338532043|ref|YP_004665377.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
 gi|337258139|gb|AEI64299.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
Length=221

 Score =  101 bits (251),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 68/190 (36%), Positives = 99/190 (53%), Gaps = 3/190 (1%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQQ+RRE T  +LL A+I+T++E GYAR +   ++KRAG+S GALF HF+T  + +AA 
Sbjct  17   RTQQERRETTRRKLLDATIETLVEQGYARLTTVEVSKRAGLSQGALFTHFDTKEELLAAA  76

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
               +  R ++ +   V   P+ R  + AA+ +L             EL VAARTD +L+ 
Sbjct  77   VEHLFPRLIQDYLAGVGARPSGRDRIAAAVDMLWAAFQRPELQAAIELYVAARTDAELRV  136

Query  123  TLQNVLGQYSAKIHDAARAL-PGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEE  181
             L  V G +   +H  AR L P A   P+  F  IV L  +   GAA+     P      
Sbjct  137  ALAAVDGPHRENLHRVARELFPEASEHPD--FDSIVELALDAVQGAAVGGSARPNDPAHR  194

Query  182  QRIPMLTALL  191
            + +  LT  +
Sbjct  195  RMLDALTNFM  204


>gi|108763662|ref|YP_635020.1| TetR family transcriptional regulator [Myxococcus xanthus DK 
1622]
 gi|108467542|gb|ABF92727.1| transcriptional regulator, TetR family [Myxococcus xanthus DK 
1622]
Length=221

 Score =  100 bits (250),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 68/190 (36%), Positives = 99/190 (53%), Gaps = 3/190 (1%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQQ+RRE T  +LL A+I+T++E GYAR +   ++KRAG+S GALF HF+T  + +AA 
Sbjct  17   RTQQERRETTRRKLLDATIETLVEQGYARLTTVEVSKRAGLSQGALFTHFDTKEELLAAA  76

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
               +  R ++ +   V   P+ R  + AA+ +L             EL VAARTD +L+ 
Sbjct  77   VEHLFPRLIQDYLAGVGARPSGRDRIAAAVDMLWAAFQRPELQAAIELYVAARTDAELRV  136

Query  123  TLQNVLGQYSAKIHDAARAL-PGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELEE  181
             L  V G +   +H  AR L P A   P+  F  IV L  +   GAA+     P      
Sbjct  137  ALAAVDGPHRENLHRVARELFPEASEHPD--FDSIVELALDAVQGAAVGGSARPNDPAHR  194

Query  182  QRIPMLTALL  191
            + +  LT  +
Sbjct  195  RMLDALTHFM  204


>gi|34498880|ref|NP_903095.1| hypothetical protein CV_3425 [Chromobacterium violaceum ATCC 
12472]
 gi|34104731|gb|AAQ61088.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 
12472]
Length=216

 Score = 88.2 bits (217),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 64/198 (33%), Positives = 98/198 (50%), Gaps = 10/198 (5%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQQ RRE T+ +L++A+I+ ++E GY   S  +I  RAGVS GALFRHF T  + M   
Sbjct  5    RTQQSRRESTIGKLVEAAIECLMESGYHGTSVQLICGRAGVSQGALFRHFATKNELMQPV  64

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
              +V+    E+     A++P         + +++ +     + VL EL++AART   L++
Sbjct  65   GRKVVDDIFESALGLAAQLPPGMSEEERIIALMKALVMSPRHIVLLELLMAARTTPDLRD  124

Query  123  TLQNVLGQYSAKIHDAARALPGAESFPEET-----FPVIVALMTNVFDGAAIVRGVLPQP  177
                 LG  S    D   A+  A  FP        F  ++ +MT +  G A+ R +   P
Sbjct  125  IF---LGSSSTYFRDRFVAMM-ASLFPRYAISTGFFATLLTMMTTM-HGMALYRTLAEHP  179

Query  178  ELEEQRIPMLTALLTAGL  195
            E +  R   L + L A L
Sbjct  180  EGDRMREQWLLSALRAEL  197


>gi|300784384|ref|YP_003764675.1| TetR family transcriptional regulator [Amycolatopsis mediterranei 
U32]
 gi|299793898|gb|ADJ44273.1| TetR family transcriptional regulator [Amycolatopsis mediterranei 
U32]
 gi|340525804|gb|AEK41009.1| TetR family transcriptional regulator [Amycolatopsis mediterranei 
S699]
Length=205

 Score = 85.9 bits (211),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 53/128 (42%), Positives = 75/128 (59%), Gaps = 6/128 (4%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ QRRE+T   LL A+ID ++EVGYAR S   I  RAGVS GA+  HF    + MAA 
Sbjct  7    RTQAQRREQTRTALLDATIDCLVEVGYARTSVQEICARAGVSKGAVQHHFTAKAELMAAA  66

Query  63   AYEV---LRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEK  119
               +   LRR+L    + + E+P     + AA+ +L    +G+ +  + EL VAARTD +
Sbjct  67   VEHLTTKLRRRL---AESLDELPGGGSGVAAAIDLLWAGYSGTLSTAVTELWVAARTDPE  123

Query  120  LKETLQNV  127
            L+  ++ V
Sbjct  124  LRAAIRPV  131


>gi|310818224|ref|YP_003950582.1| TetR family transcriptional regulator [Stigmatella aurantiaca 
DW4/3-1]
 gi|309391296|gb|ADO68755.1| Transcriptional regulator, TetR family [Stigmatella aurantiaca 
DW4/3-1]
Length=216

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 56/170 (33%), Positives = 83/170 (49%), Gaps = 4/170 (2%)

Query  16   LLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVLRRQLETFT  75
            LL A+I  ++E GYAR +   + +RAGVS GA+F HFET  + + A    +  R ++ + 
Sbjct  27   LLDATIGVLVEQGYARLTTVEVARRAGVSQGAIFTHFETKAELLVAAVEHLFPRLIQDYL  86

Query  76   KQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQNVLGQYSAKI  135
                 +P  R  + AA+ +L  +          EL VAART+ +L+  L  V G +   +
Sbjct  87   AGYGGLPGGRDRIGAAVEMLWAVFERPEMLAAVELYVAARTEPELQAALATVEGPHRNNL  146

Query  136  HDAARAL-PGAESFPEETFPVIVALMTNVFDGAAIVRGVLP-QPELEEQR  183
               AR L P A   P+  F  +V L+ +   G AI R   P  P L   R
Sbjct  147  VRVARGLFPEAAEHPD--FEAVVELIIDAVQGGAIARVARPHHPALRRMR  194


>gi|54024058|ref|YP_118300.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54015566|dbj|BAD56936.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=221

 Score = 71.6 bits (174),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 50/151 (34%), Positives = 78/151 (52%), Gaps = 4/151 (2%)

Query  4    TQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATA  63
            TQ+QR  ET A+++ A+I+ ++EVGY   +  ++ KRAGV+ GAL  H+ +  D +A   
Sbjct  20   TQEQRSAETQAKVMDAAIECLLEVGYGETTTQMVAKRAGVTRGALLHHYPSREDLVAGAV  79

Query  64   YEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL--K  121
              +  ++ E   +  A +      +P AL +L  +  G       EL+VA+RTD  L  +
Sbjct  80   RYLAVKRTEEALRTFARLTQGESLIPDALDLLWALYQGPLFTAAIELLVASRTDPALARQ  139

Query  122  ETLQNVLGQYSAKIHDAARALPG--AESFPE  150
                  +   S K   +A AL G  AESF E
Sbjct  140  VEAVEEVVVSSIKAAGSAMALSGISAESFNE  170


>gi|336178082|ref|YP_004583457.1| regulatory protein TetR [Frankia symbiont of Datisca glomerata]
 gi|334859062|gb|AEH09536.1| regulatory protein TetR [Frankia symbiont of Datisca glomerata]
Length=240

 Score = 71.6 bits (174),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 58/187 (32%), Positives = 85/187 (46%), Gaps = 4/187 (2%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFM-AA  61
            RT ++R  ++  R+L A++D ++  GYA  +  VI   AGVS G L  HF +    + AA
Sbjct  42   RTHRERTLDSRQRILDATVDCLVRYGYAGTTTLVIQAEAGVSRGRLLHHFPSREVLLVAA  101

Query  62   TAYEVLRR---QLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDE  118
            T + V  R     E F K + E+P     L  A+ ++             EL  AART+E
Sbjct  102  TQHLVTTRLTTTWEHFGKLLDELPDGAARLDRAVEMMWFTFHQPYFWAAMELWTAARTNE  161

Query  119  KLKETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPE  178
             L+E L     +  A I  AA    G      ETFP +  L+     GAA+  G  P+  
Sbjct  162  ALREALAPAERRLGAAIRTAAEGAFGPALASRETFPQVRELLMTSMRGAAMTYGFDPRTA  221

Query  179  LEEQRIP  185
              +  +P
Sbjct  222  ASDPHLP  228


>gi|170742796|ref|YP_001771451.1| TetR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197070|gb|ACA19017.1| transcriptional regulator, TetR family [Methylobacterium sp. 
4-46]
Length=221

 Score = 70.9 bits (172),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 62/198 (32%), Positives = 97/198 (49%), Gaps = 11/198 (5%)

Query  1    MARTQQQRREETVA---RLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGD  57
            M+RT++Q++  +VA   RL++A++D I EVGY  A+   I +RA VS GAL  HF T  D
Sbjct  1    MSRTERQQQARSVATRERLVRAALDEIFEVGYHAATTQQIAERARVSRGALLHHFPTRAD  60

Query  58   FMAATAYEVLRRQLETFTKQVAEIPAD--RPALPAA--LTILRDITAGSTNAVLYELMVA  113
             + A A EVL   L   T ++  + AD    ALP A  +  L  + +G    +  E++  
Sbjct  61   IILA-AMEVL---LADGTAEIKAVSADVRSGALPLADFVEFLWQLFSGRFFYLSMEMITE  116

Query  114  ARTDEKLKETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGV  173
            AR D  L+  L  V+ ++ A +          E  P     +I+ L  N+  G  +   +
Sbjct  117  ARHDPALRRGLIPVVQRFHAALDAIWVEFCDGERRPPREARIILNLTVNLVRGMGVQTVL  176

Query  174  LPQPELEEQRIPMLTALL  191
             P+P+     I    +LL
Sbjct  177  RPEPDYYRDMIEAWKSLL  194


>gi|333991364|ref|YP_004523978.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333487332|gb|AEF36724.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
Length=212

 Score = 70.5 bits (171),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 45/118 (39%), Positives = 63/118 (54%), Gaps = 0/118 (0%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ +R   T   LL A++D ++EVG+   +   + +RAGVSVGAL  HF T    + A 
Sbjct  8    RTQAERTAGTRRALLDATLDALVEVGFKGTTTTEVARRAGVSVGALQGHFPTKVGLLTAA  67

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
                L R++E F   +A +      L  A  +L  + +G T A  +EL VAARTD  L
Sbjct  68   IEFSLNRRIEEFEVLMAGLDPAADKLDEAFDLLWSMYSGPTFAATHELWVAARTDPDL  125


>gi|302525611|ref|ZP_07277953.1| predicted protein [Streptomyces sp. AA4]
 gi|302434506|gb|EFL06322.1| predicted protein [Streptomyces sp. AA4]
Length=181

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 52/163 (32%), Positives = 82/163 (51%), Gaps = 20/163 (12%)

Query  16   LLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVLRRQLET-F  74
            +L A+ID ++++GY+RAS   I  RAGVS GA+  +F T  + MAA A E L  +L T  
Sbjct  1    MLDATIDCLVDIGYSRASVQEICTRAGVSKGAVQHYFATKAELMAA-AVEHLTTKLRTQL  59

Query  75   TKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQNV-------  127
               +  +P     + AA+ +L +  +G+ +  + EL VAARTD +L+  ++ V       
Sbjct  60   AASLGSLPGGASGVAAAIDLLWEGYSGTLSTAVTELWVAARTDPELRAAIRPVDRALGRA  119

Query  128  -LGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAI  169
             LG  S    D           P+E   ++  L  N+  G A+
Sbjct  120  TLGHISEVAGD----------LPKERAEMLFWLTVNLTRGLAL  152


>gi|260426661|ref|ZP_05780640.1| transcriptional regulator, TetR family [Citreicella sp. SE45]
 gi|260421153|gb|EEX14404.1| transcriptional regulator, TetR family [Citreicella sp. SE45]
Length=211

 Score = 69.7 bits (169),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 40/137 (30%), Positives = 69/137 (51%), Gaps = 0/137 (0%)

Query  6    QQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYE  65
            Q R   T  +L++A++DTI +VGY +AS    ++RAGVS GAL  HF    D M A+   
Sbjct  8    QARSVATREKLIEAALDTIFDVGYEKASTPEFSRRAGVSRGALLHHFPARSDIMVASMET  67

Query  66   VLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQ  125
            +LR   +      A +  +   L A +  L  + +G    +  E +  +RTD++L+  + 
Sbjct  68   LLRGGTDEIRDMAASVSRNEIGLDAFIDWLHQLFSGRFFYLAVEFINGSRTDDELRARMI  127

Query  126  NVLGQYSAKIHDAARAL  142
             V+ ++   + +  R  
Sbjct  128  PVVREFHEALDEIWRGF  144


>gi|338531327|ref|YP_004664661.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
 gi|337257423|gb|AEI63583.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1]
Length=209

 Score = 69.7 bits (169),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 47/135 (35%), Positives = 70/135 (52%), Gaps = 0/135 (0%)

Query  2    ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA  61
            AR +Q+R   T  RL++A+I  + E+G+A A+  VI +RAGVS GA   HF T  D +AA
Sbjct  9    ARQEQERSRVTRQRLMEAAIGALSELGWAGATMTVIAERAGVSRGACQHHFPTRADLVAA  68

Query  62   TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
                V  +Q+E   ++ A +PAD     A L +L  I          +L VAA  D +L+
Sbjct  69   AVEYVGHQQVEAVLRKAARLPADARRTEAILHMLAGIYLSPVFTAAVQLWVAAVADAELR  128

Query  122  ETLQNVLGQYSAKIH  136
              L  +  +   + H
Sbjct  129  AQLAPLEARVGREFH  143


>gi|108761552|ref|YP_628362.1| TetR family transcriptional regulator [Myxococcus xanthus DK 
1622]
 gi|108465432|gb|ABF90617.1| transcriptional regulator, TetR family [Myxococcus xanthus DK 
1622]
Length=222

 Score = 69.7 bits (169),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 46/135 (35%), Positives = 70/135 (52%), Gaps = 0/135 (0%)

Query  2    ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA  61
             R +Q+R   T  RL++A+I  + E+G+A A+  VI +RAGVS GA   HF T  D +AA
Sbjct  22   GRQEQERSRVTRQRLMEAAIGALSELGWAGATMTVIAERAGVSRGACQHHFPTRADLVAA  81

Query  62   TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
                V  +Q+E   ++ A++PAD     A L +L  I          +L VAA  D +L+
Sbjct  82   AVEYVGHQQVEAVLRKAAQLPADARRTEAILHMLAGIYLSPVFTAAVQLWVAAVADAELR  141

Query  122  ETLQNVLGQYSAKIH  136
              L  +  +   + H
Sbjct  142  AQLAPLEARVGREFH  156


>gi|83950519|ref|ZP_00959252.1| putative transcriptional regulator [Roseovarius nubinhibens ISM]
 gi|83838418|gb|EAP77714.1| putative transcriptional regulator [Roseovarius nubinhibens ISM]
Length=212

 Score = 69.7 bits (169),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 53/194 (28%), Positives = 96/194 (50%), Gaps = 5/194 (2%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ +R + T   L +A+I  ++EVGY+  +   I KRAGVS GA   H+    D + A 
Sbjct  10   RTQTERSDRTRKLLHEATIALLMEVGYSNTTTLGIAKRAGVSRGAQTHHYPEKIDLIVAA  69

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALT-ILRDITAGSTNAVLYELMVAARTDEKLK  121
              ++     E   +Q A + A R +L   L  +   +  G       E++VAAR D  L+
Sbjct  70   TEDMFHAFAEGLAEQAALLRAGRLSLDEFLDRVWHRMLDGDWFYASLEIIVAARGDADLR  129

Query  122  ETLQ----NVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQP  177
            + LQ    ++ G++ A   +    + G+++ P+    VI+ ++ N+F G A+   + P  
Sbjct  130  QRLQPAILSLHGRFEAIWRETFAPVSGSDAGPDADPAVILNIVMNMFRGMAVQAVLRPDK  189

Query  178  ELEEQRIPMLTALL  191
               ++ + ++  +L
Sbjct  190  TFLQEMLKVMADIL  203


>gi|134099783|ref|YP_001105444.1| TetR family transcriptional regulator [Saccharopolyspora erythraea 
NRRL 2338]
 gi|291005626|ref|ZP_06563599.1| TetR family transcriptional regulator [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133912406|emb|CAM02519.1| TetR-family transcriptional regulator [Saccharopolyspora erythraea 
NRRL 2338]
Length=207

 Score = 69.3 bits (168),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 57/198 (29%), Positives = 92/198 (47%), Gaps = 15/198 (7%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            R QQ R   T  RLL+A++D++ E G+   + +V+ +RAGVS GA   HF T  D + A 
Sbjct  8    RPQQDRSRATRRRLLEAAVDSLAEHGWTGTTVSVVAERAGVSRGAAQHHFPTREDLVTAA  67

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
               V   ++    +Q+ ++P  +      + IL  +  G+      +L VAA +DE L+E
Sbjct  68   VSHVTDARISEIQEQITKLPRGKGRTEGVVDILVRLYTGTVFRAALQLWVAASSDEALRE  127

Query  123  TLQNVLGQYSAKIHDAA-------RALPGAESFPEETFPVIVAL-MTNVF-DGAAIVRGV  173
             +  V  +   + H  A        ++PG     + T  +   L + NV  D +   RG+
Sbjct  128  QVVPVEARVGREAHRLAVELLGVDESVPGVRETVQATLDMARGLGLANVLTDDSRRRRGI  187

Query  174  LPQPE------LEEQRIP  185
            + Q        LEE R P
Sbjct  188  VRQWARTLDAVLEEGRRP  205


>gi|220921544|ref|YP_002496845.1| TetR family transcriptional regulator [Methylobacterium nodulans 
ORS 2060]
 gi|219946150|gb|ACL56542.1| transcriptional regulator, TetR family [Methylobacterium nodulans 
ORS 2060]
Length=209

 Score = 68.9 bits (167),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 51/152 (34%), Positives = 80/152 (53%), Gaps = 8/152 (5%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ+QR  ET ARL+ A++D ++E GYAR + A I +RAGV+ GAL  HF    D +  +
Sbjct  10   RTQEQRTAETRARLIAATLDLLMERGYARTTTAEIAERAGVTRGALNHHFTGKDDLVVHS  69

Query  63   AYEVLRRQLETFTKQV---AEIPADRP-ALPAALTILRDITAGSTNAVLYELMVAARTDE  118
                +  QL T T ++   AE+  +   ALP  +  L ++ +G    +  E +  AR + 
Sbjct  70   ----VEHQLRTSTGEIRALAELVRNGSLALPGFIDRLWEMFSGRLFLITLEHVTEARHNA  125

Query  119  KLKETLQNVLGQYSAKIHDAARALPGAESFPE  150
             L+E L  V+ ++ A +    R L      P+
Sbjct  126  ALREALVPVVREFHAALDATWRDLFRGNDAPD  157


>gi|56695487|ref|YP_165836.1| TetR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56677224|gb|AAV93890.1| transcriptional regulator, TetR family [Ruegeria pomeroyi DSS-3]
Length=209

 Score = 68.6 bits (166),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 50/165 (31%), Positives = 83/165 (51%), Gaps = 3/165 (1%)

Query  4    TQQQRRE-ETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            TQQ RR   T A++++A+I  +  +GYA  + A I +RAGVS GA+  HF T    +AAT
Sbjct  8    TQQDRRSRSTQAKVIRATITCLDRLGYAETTFARIQERAGVSRGAITHHFPTRQALVAAT  67

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
            A E+L R L+   ++ A+  +  P           +   +    + E++VA RTD +L  
Sbjct  68   AMELLSRALDPVERRAAQAASPEPVRDLITRAWGQVVNAAGGRAMVEILVACRTDAELYR  127

Query  123  TLQNVLGQYSAKIH-DAARALPGAESFPEETFPVIVALMTNVFDG  166
             L+  L  +  +     ARA  GA+   ++   ++ ++  N   G
Sbjct  128  LLETRLHDWDHQSRASVARAYVGADQAADDA-ELLWSMTRNFLRG  171


>gi|288924057|ref|ZP_06418117.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
 gi|288344594|gb|EFC79063.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
Length=234

 Score = 68.6 bits (166),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 45/169 (27%), Positives = 82/169 (49%), Gaps = 4/169 (2%)

Query  5    QQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAY  64
            + ++RE++  R+L A++D +IE GYA A+   I  RAG+S G L  HF +    + A + 
Sbjct  13   RDEQREDSRNRILDAAVDCLIEGGYASATTPRIQARAGISRGGLLHHFPSRDALLVAASE  72

Query  65   EVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLY----ELMVAARTDEKL  120
             + RR++ +      +I    PA P  LT + ++   + +   +    EL  AART +++
Sbjct  73   HLARRRIASTAATAEQIARTHPAGPQRLTRMVELLWTTFHEPHWWAALELWTAARTHDEI  132

Query  121  KETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAI  169
               L+ V       + D   A+ G +      +P +  L+ +   G A+
Sbjct  133  AVALRPVERHLGTIVRDGVDAMFGPDYTGHPRYPQVRELLVSSMRGLAL  181


>gi|54027417|ref|YP_121659.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54018925|dbj|BAD60295.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=228

 Score = 67.4 bits (163),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 53/171 (31%), Positives = 80/171 (47%), Gaps = 10/171 (5%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMA  60
            M  TQ +RR  T ARLL A++ +++EVGYA  +   +  RAGV  G L  HF T    +A
Sbjct  1    MPETQARRRARTRARLLDAAVASLVEVGYAGTTTLEVQNRAGVPRGTLQHHFPTKPALLA  60

Query  61   ATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
                 +  R+ E  + + A+IP     L AA+ +   + +G +     E  V ARTD  L
Sbjct  61   GVVEHLAERRFEQLSTEFAQIPPGCDRLAAAVELTMGMLSGPSFLATLECWVGARTDPDL  120

Query  121  KETL----QNVLGQYSAKIHDAARALPGAESFPEET-FPVIVALMTNVFDG  166
            +       Q +L Q   ++ D  RA      FP+++  P I      +  G
Sbjct  121  RAAFLPLEQRLLEQMHLRVRDLFRA-----EFPDDSRVPTITEFTIEIMTG  166


>gi|312138790|ref|YP_004006126.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311888129|emb|CBH47441.1| putative TetR family transcriptional regulator [Rhodococcus equi 
103S]
Length=211

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 46/123 (38%), Positives = 62/123 (51%), Gaps = 7/123 (5%)

Query  2    ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA  61
            +RTQ +R   T  +LL A+I+ ++EVGYA  S+  +TKRAGVS GA    F T    + A
Sbjct  29   SRTQAERSAATRGKLLDATIELLVEVGYAGTSSQAVTKRAGVSRGAQLHQFPTKESLVVA  88

Query  62   TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
                ++ R+L       AE+   RP     L  L +   G       EL VAARTD  L 
Sbjct  89   AVGHLVDRRL-------AELLRSRPDPDRGLETLCEAFTGPLFYAALELWVAARTDPGLH  141

Query  122  ETL  124
            E +
Sbjct  142  EAM  144


>gi|169629478|ref|YP_001703127.1| putative transcriptional regulator TetR [Mycobacterium abscessus 
ATCC 19977]
 gi|169241445|emb|CAM62473.1| Putative transcriptional regulator, TetR [Mycobacterium abscessus]
Length=238

 Score = 66.6 bits (161),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 57/201 (29%), Positives = 92/201 (46%), Gaps = 24/201 (11%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ++R      RLL A++D +++ GYA  +   + +RAGV+ GAL  HF++  + +  +
Sbjct  21   RTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAGVTRGALVHHFQSKSELLGES  80

Query  63   AYEVLRRQLETFTKQVAEIPADRPA--LPAALTILRDITAGSTNAVLYELMVAARTDEKL  120
               +  RQ +    ++  +  D  A  +   L  L  +  GS      EL +AARTD +L
Sbjct  81   VRHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQGSMFIATMELWIAARTDAEL  140

Query  121  KETLQN----VLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVL--  174
               +      V+ Q+S         L  + S  +E   VI  +     D    VRG+L  
Sbjct  141  SAQMDQFEFIVMQQFS--------TLGQSVSQTDEELRVIRNITLTAMDA---VRGILVN  189

Query  175  ----PQPELEEQRIPMLTALL  191
                PQ E+ +QR     A+L
Sbjct  190  SMTAPQ-EVRDQRWARAKAML  209


>gi|325676512|ref|ZP_08156190.1| TetR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
 gi|325552690|gb|EGD22374.1| TetR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
Length=191

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 46/123 (38%), Positives = 62/123 (51%), Gaps = 7/123 (5%)

Query  2    ARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAA  61
            +RTQ +R   T  +LL A+I+ ++EVGYA  S+  +TKRAGVS GA    F T    + A
Sbjct  9    SRTQAERSAATRGKLLDATIELLVEVGYAGTSSQAVTKRAGVSRGAQLHQFPTKESLVVA  68

Query  62   TAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
                ++ R+L       AE+   RP     L  L +   G       EL VAARTD  L 
Sbjct  69   AVGHLVDRRL-------AELLRSRPDPDRGLETLCEAFTGPLFYAALELWVAARTDPGLH  121

Query  122  ETL  124
            E +
Sbjct  122  EAM  124


>gi|288917009|ref|ZP_06411380.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
 gi|288351549|gb|EFC85755.1| transcriptional regulator, TetR family [Frankia sp. EUN1f]
Length=212

 Score = 65.1 bits (157),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 42/165 (26%), Positives = 77/165 (47%), Gaps = 4/165 (2%)

Query  9    REETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVLR  68
            RE++  R+L A++D ++E GY  A+   I KRAG+S G L  HF +    + A +  + R
Sbjct  17   REDSRNRILDAAVDCLVEGGYVNATTPRIQKRAGISRGGLLHHFPSRDALLVAASEHLAR  76

Query  69   RQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLY----ELMVAARTDEKLKETL  124
            R++     +  +I    P  P  LT + ++   + +   +    EL  AART++++   L
Sbjct  77   RRIAISVARAEQIARSHPVGPERLTQMVELLWSTFHEPHWWAALELWTAARTNDEIATAL  136

Query  125  QNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAI  169
            +         +  A  A+ G        +P +  L+ +   G A+
Sbjct  137  RPTERHLGGIVRGAVDAMFGPYYVGHPRYPQVRELLLSSMRGLAL  181


>gi|169627481|ref|YP_001701130.1| TetR family transcriptional regulator [Mycobacterium abscessus 
ATCC 19977]
 gi|169239448|emb|CAM60476.1| Putative transcriptional regulator, TetR family [Mycobacterium 
abscessus]
Length=203

 Score = 65.1 bits (157),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 36/119 (31%), Positives = 65/119 (55%), Gaps = 0/119 (0%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ++R     ARLL+A+ID ++E GY+  + + I  RAG + GAL  HF++  + MA +
Sbjct  6    RTQEERSAAMRARLLEATIDCLVEFGYSGTTTSRIASRAGATRGALIHHFQSKSELMAES  65

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
               +  ++ +   +++  +      +   L +L  I  G     + EL++AART+  L+
Sbjct  66   VRHLAFKRTQAVLEELMAMDQSADPIERYLDVLWRIHQGPLFIAVVELLIAARTEPDLR  124


>gi|269125808|ref|YP_003299178.1| TetR family transcriptional regulator [Thermomonospora curvata 
DSM 43183]
 gi|268310766|gb|ACY97140.1| transcriptional regulator, TetR family [Thermomonospora curvata 
DSM 43183]
Length=228

 Score = 64.3 bits (155),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 51/158 (33%), Positives = 80/158 (51%), Gaps = 11/158 (6%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ++RR  T ARLL A+ + + ++G+A  S   +++RAGVS GA   H+ T    +AA 
Sbjct  28   RTQEERRSATQARLLDATAEALADLGWAGLSTTEVSRRAGVSRGAQQHHYPTKMSLVAAA  87

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
               +L R    + +  AE+P ++  +  AL +  ++        L EL +A RTDE L++
Sbjct  88   LEHLLSRLRAEYEQAYAELPEEQRNIEGALDLFWEMLRQPPAIALLELALAGRTDESLRD  147

Query  123  TLQNVLGQYSAKIHDAARALPG---AESFPEETFPVIV  157
                     SA +H+    +      E FPE   P IV
Sbjct  148  --------LSADLHERVIVIIKEVFHELFPESLPPEIV  177


>gi|343928173|ref|ZP_08767628.1| putative TetR family transcriptional regulator [Gordonia alkanivorans 
NBRC 16433]
 gi|343761871|dbj|GAA14554.1| putative TetR family transcriptional regulator [Gordonia alkanivorans 
NBRC 16433]
Length=193

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 59/197 (30%), Positives = 93/197 (48%), Gaps = 19/197 (9%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ +R   T  R+L A+++ ++EVGYA  +   + +RAGVS GAL  HF T    + A 
Sbjct  11   RTQAERTAATRTRVLDAAVEALVEVGYAATTTQEVNRRAGVSRGALLHHFPTRESLVVAA  70

Query  63   AYEVLRRQLETFTKQVAEIPADRPAL-PAALTILRDITAGSTNAVLYELMVAARTDEKLK  121
               ++ R+LE            RP      L +L +  +G       EL VAAR D +L+
Sbjct  71   VGHLVDRRLEEVLS--------RPRTGDEGLEVLIESFSGPLFDAALELWVAARCDVELR  122

Query  122  ETLQNVLGQYSAKIHDAARALPGAESFPEETFPVIVALMTNVFDGAAIVRGVLPQPELE-  180
              L  +      ++ DA  A+  AE F +   P  + L   +  G A+ R +L  P+ + 
Sbjct  123  TALIPL----EQRVSDAL-AVGCAELFGDRYTPAELELSIELARGLAVSR-ILRSPDADR  176

Query  181  ---EQRIPMLTALLTAG  194
               ++ +P+   LL  G
Sbjct  177  EYLDRLLPIWKDLLNRG  193


>gi|111021280|ref|YP_704252.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820810|gb|ABG96094.1| probable transcriptional regulator, TetR family protein [Rhodococcus 
jostii RHA1]
Length=197

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (53%), Gaps = 7/120 (5%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ +R      +LL A++D+++E+GYAR +   I +RAGVS GA   HF T    + A 
Sbjct  15   RTQAERTAAMRTKLLDAAVDSLVELGYARTTTQGIARRAGVSRGAQLHHFPTKESLVVAA  74

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
               ++ +++E      A++ A R      + +L D  +G       EL VAARTD  L E
Sbjct  75   VEHLVDKRMEEIL--AADVDAGR-----GVDVLADAFSGPLFYAALELWVAARTDPALYE  127


>gi|226363622|ref|YP_002781404.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242111|dbj|BAH52459.1| putative TetR family transcriptional regulator [Rhodococcus opacus 
B4]
Length=194

 Score = 63.5 bits (153),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 43/120 (36%), Positives = 63/120 (53%), Gaps = 7/120 (5%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            RTQ +R      +LL A++D+++E+GYAR +   I +RAGVS GA   HF T    + A 
Sbjct  12   RTQAERTAAMRTKLLDAAVDSLVELGYARTTTQGIARRAGVSRGAQLHHFPTKESLVVAA  71

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
               ++ +++E      AE+ A R      + +L D  +G       EL VAARTD  L E
Sbjct  72   VEHLVDKRMEEIL--AAEVDAGR-----GVEVLADAFSGPLFYAALELWVAARTDPVLFE  124


>gi|334343327|ref|YP_004555931.1| regulatory protein TetR [Sphingobium chlorophenolicum L-1]
 gi|334104002|gb|AEG51425.1| regulatory protein TetR [Sphingobium chlorophenolicum L-1]
Length=259

 Score = 63.5 bits (153),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/120 (34%), Positives = 58/120 (49%), Gaps = 0/120 (0%)

Query  8    RREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAATAYEVL  67
            RRE T  R+ +A+ID + E GYA AS   + +RAGVS GAL + F T     A      L
Sbjct  59   RREITRQRVFEAAIDCLHETGYAGASTLAVARRAGVSRGALMKQFPTKATLFADLVEHFL  118

Query  68   RRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKETLQNV  127
             +  E     + + PA  P + A +    ++        + E+M+ AR D +L E L  V
Sbjct  119  DQMREETLNHIRKFPAGLPRIMARVDYAWELYKKPKALAIVEVMLGARGDPELSERLAQV  178


>gi|146275755|ref|YP_001165915.1| TetR family transcriptional regulator [Novosphingobium aromaticivorans 
DSM 12444]
 gi|145322446|gb|ABP64389.1| transcriptional regulator, TetR family [Novosphingobium aromaticivorans 
DSM 12444]
Length=224

 Score = 63.5 bits (153),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 49/152 (33%), Positives = 76/152 (50%), Gaps = 10/152 (6%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            R QQ++   T  ++L+A++D ++E GYA  + A + +RA VS GA+  HF T  D +AA 
Sbjct  26   RWQQRKSARTREKMLEAAVDCLVEGGYAGLTTAQVAERAQVSRGAMHHHFATRMDLVAAV  85

Query  63   AYEVLRRQLETFTKQ-VAEIPADRPALPAALTI---LRDITAGSTNAVLYELMVAARTDE  118
               +  +++  F    +A +   R AL   L      R +      A L EL VAARTD 
Sbjct  86   VEHIFYQRMRVFLDDYIAAMAQSRGALLIDLATDAHWRSVQTREYAAYL-ELAVAARTDH  144

Query  119  KLKETLQNVLGQYSAKIHDAARALPGAESFPE  150
            +L     N   + +A+ +D        ESFP+
Sbjct  145  EL-----NAAFEPAARRYDEVWTAEMIESFPQ  171


>gi|89067670|ref|ZP_01155124.1| putative transcriptional regulator [Oceanicola granulosus HTCC2516]
 gi|89046640|gb|EAR52695.1| putative transcriptional regulator [Oceanicola granulosus HTCC2516]
Length=216

 Score = 63.2 bits (152),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/133 (31%), Positives = 66/133 (50%), Gaps = 0/133 (0%)

Query  3    RTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDFMAAT  62
            R  Q R   T  +L+QA+++ I +VG+  AS    ++RAGVS GAL  HF T  D + A 
Sbjct  13   RPAQARSATTRRKLVQAALEVIYDVGFKSASTPEFSRRAGVSRGALLHHFPTRSDIIVAA  72

Query  63   AYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTDEKLKE  122
              E+LR       +    + A   +L   +  L  + +G    +  E +  ARTD +L+ 
Sbjct  73   MEELLRENTREIRQLAGAVAAQEISLGEFVEFLWQMFSGRFFFLSLEFINEARTDSELRG  132

Query  123  TLQNVLGQYSAKI  135
             ++ V+  + A +
Sbjct  133  RMKPVVRDFHAAL  145


>gi|226303920|ref|YP_002763878.1| TetR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
 gi|226183035|dbj|BAH31139.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
Length=194

 Score = 63.2 bits (152),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 46/118 (39%), Positives = 62/118 (53%), Gaps = 9/118 (7%)

Query  1    MARTQQQRREETVARLLQASIDTIIEVGYARASAAVITKRAGVSVGALFRHFETMGDF-M  59
            ++RTQ +R      RLL A++++++E+GYAR S   I +RAGVS G    HF T     +
Sbjct  10   VSRTQAERTAAMRGRLLDAAVESLVELGYARTSTQEIARRAGVSRGTQLHHFPTKESLVV  69

Query  60   AATAYEVLRRQLETFTKQVAEIPADRPALPAALTILRDITAGSTNAVLYELMVAARTD  117
            AA  Y V +R  E  T +V     DR      L +L D  +G       EL VAARTD
Sbjct  70   AAVEYLVDKRLEEILTAEV-----DR---GRGLEVLADAFSGPLFYAALELWVAARTD  119



Lambda     K      H
   0.320    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 202202242956


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40