BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2917 Length=626 Score E Sequences producing significant alignments: (Bits) Value gi|15610054|ref|NP_217433.1| hypothetical protein Rv2917 [Mycoba... 1260 0.0 gi|31794093|ref|NP_856586.1| hypothetical protein Mb2941 [Mycoba... 1258 0.0 gi|340627907|ref|YP_004746359.1| hypothetical protein MCAN_29381... 1253 0.0 gi|289755030|ref|ZP_06514408.1| conserved hypothetical protein [... 1221 0.0 gi|308406006|ref|ZP_07494742.2| conserved alanine and arginine r... 1214 0.0 gi|308232281|ref|ZP_07415542.2| conserved alanine and arginine r... 1212 0.0 gi|339299369|gb|AEJ51479.1| hypothetical protein CCDC5180_2642 [... 1210 0.0 gi|15842460|ref|NP_337497.1| RNA helicase, putative [Mycobacteri... 1208 0.0 gi|254233007|ref|ZP_04926334.1| conserved hypothetical alanine a... 1128 0.0 gi|289571104|ref|ZP_06451331.1| conserved hypothetical protein [... 1085 0.0 gi|183981803|ref|YP_001850094.1| hypothetical protein MMAR_1790 ... 988 0.0 gi|118617612|ref|YP_905944.1| hypothetical protein MUL_2038 [Myc... 984 0.0 gi|240169628|ref|ZP_04748287.1| hypothetical protein MkanA1_0996... 971 0.0 gi|15827856|ref|NP_302119.1| hypothetical protein ML1624 [Mycoba... 951 0.0 gi|254821191|ref|ZP_05226192.1| hypothetical protein MintA_14737... 947 0.0 gi|41409083|ref|NP_961919.1| hypothetical protein MAP2985 [Mycob... 946 0.0 gi|296171451|ref|ZP_06852737.1| type III restriction enzyme, res... 946 0.0 gi|336459024|gb|EGO37974.1| DNA/RNA helicase, superfamily II [My... 942 0.0 gi|342858231|ref|ZP_08714886.1| hypothetical protein MCOL_05136 ... 938 0.0 gi|118462616|ref|YP_882944.1| DNA or RNA helicase of superfamily... 918 0.0 gi|254776217|ref|ZP_05217733.1| DNA or RNA helicase of superfami... 915 0.0 gi|120401774|ref|YP_951603.1| type III restriction enzyme, res s... 874 0.0 gi|315442297|ref|YP_004075176.1| DNA/RNA helicase, superfamily I... 866 0.0 gi|145220750|ref|YP_001131428.1| type III restriction enzyme, re... 864 0.0 gi|118468804|ref|YP_885270.1| DNA or RNA helicase of superfamily... 855 0.0 gi|108797582|ref|YP_637779.1| type III restriction enzyme, res s... 831 0.0 gi|126433205|ref|YP_001068896.1| type III restriction enzyme, re... 828 0.0 gi|333989066|ref|YP_004521680.1| hypothetical protein JDM601_042... 824 0.0 gi|169627748|ref|YP_001701397.1| hypothetical protein MAB_0645c ... 803 0.0 gi|111023776|ref|YP_706748.1| RNA helicase [Rhodococcus jostii R... 786 0.0 gi|226366212|ref|YP_002783995.1| hypothetical protein ROP_68030 ... 781 0.0 gi|312139429|ref|YP_004006765.1| restriction endonuclease [Rhodo... 774 0.0 gi|229491304|ref|ZP_04385130.1| type III restriction enzyme, res... 770 0.0 gi|226306297|ref|YP_002766257.1| hypothetical protein RER_28100 ... 770 0.0 gi|262202175|ref|YP_003273383.1| type III restriction protein re... 770 0.0 gi|333919430|ref|YP_004493011.1| putative RNA helicase [Amycolic... 757 0.0 gi|257056429|ref|YP_003134261.1| DNA/RNA helicase, superfamily I... 755 0.0 gi|54025739|ref|YP_119981.1| hypothetical protein nfa37690 [Noca... 748 0.0 gi|343924628|ref|ZP_08764172.1| hypothetical protein GOALK_021_0... 745 0.0 gi|302525721|ref|ZP_07278063.1| type III restriction enzyme [Str... 737 0.0 gi|296139553|ref|YP_003646796.1| type III restriction protein re... 731 0.0 gi|300784487|ref|YP_003764778.1| type III restriction enzyme, re... 730 0.0 gi|134098375|ref|YP_001104036.1| type III restriction enzyme, re... 728 0.0 gi|317508302|ref|ZP_07965982.1| type III restriction enzyme [Seg... 728 0.0 gi|256375639|ref|YP_003099299.1| type III restriction protein re... 724 0.0 gi|326384455|ref|ZP_08206135.1| type III restriction protein res... 723 0.0 gi|225021255|ref|ZP_03710447.1| hypothetical protein CORMATOL_01... 707 0.0 gi|339295753|gb|AEJ47864.1| hypothetical protein CCDC5079_2674 [... 704 0.0 gi|300858630|ref|YP_003783613.1| hypothetical protein cpfrc_0121... 704 0.0 gi|296394432|ref|YP_003659316.1| type III restriction protein re... 704 0.0 >gi|15610054|ref|NP_217433.1| hypothetical protein Rv2917 [Mycobacterium tuberculosis H37Rv] gi|148662761|ref|YP_001284284.1| hypothetical protein MRA_2942 [Mycobacterium tuberculosis H37Ra] gi|167969546|ref|ZP_02551823.1| hypothetical protein MtubH3_16576 [Mycobacterium tuberculosis H37Ra] gi|2245331|emb|CAA98979.1| CONSERVED HYPOTHETICAL ALANINE AND ARGININE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506913|gb|ABQ74722.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] Length=626 Score = 1260 bits (3261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 625/626 (99%), Positives = 626/626 (100%), Gaps = 0/626 (0%) Query 1 VRVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT 60 +RVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT Sbjct 1 MRVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT 60 Query 61 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT 120 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT Sbjct 61 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT 120 Query 121 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL 180 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL Sbjct 121 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL 180 Query 181 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ 240 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ Sbjct 181 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ 240 Query 241 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD 300 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD Sbjct 241 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD 300 Query 301 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD 360 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD Sbjct 301 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD 360 Query 361 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR 420 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR Sbjct 361 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR 420 Query 421 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER 480 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER Sbjct 421 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER 480 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR Sbjct 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 Query 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG Sbjct 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 Query 601 PPIAAATRAQIKARIDALRQLNSERS 626 PPIAAATRAQIKARIDALRQLNSERS Sbjct 601 PPIAAATRAQIKARIDALRQLNSERS 626 >gi|31794093|ref|NP_856586.1| hypothetical protein Mb2941 [Mycobacterium bovis AF2122/97] gi|121638798|ref|YP_979022.1| hypothetical protein BCG_2938 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824106|ref|YP_001288860.1| hypothetical protein TBFG_12931 [Mycobacterium tuberculosis F11] 40 more sequence titles Length=626 Score = 1258 bits (3255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 624/626 (99%), Positives = 625/626 (99%), Gaps = 0/626 (0%) Query 1 VRVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT 60 +RVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT Sbjct 1 MRVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT 60 Query 61 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT 120 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT Sbjct 61 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT 120 Query 121 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL 180 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL Sbjct 121 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL 180 Query 181 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ 240 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ Sbjct 181 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ 240 Query 241 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD 300 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD Sbjct 241 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD 300 Query 301 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD 360 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD Sbjct 301 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD 360 Query 361 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR 420 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR Sbjct 361 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR 420 Query 421 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER 480 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER Sbjct 421 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER 480 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR Sbjct 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 Query 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGG Sbjct 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGG 600 Query 601 PPIAAATRAQIKARIDALRQLNSERS 626 PPIAAATRAQIKARIDALRQLNSERS Sbjct 601 PPIAAATRAQIKARIDALRQLNSERS 626 >gi|340627907|ref|YP_004746359.1| hypothetical protein MCAN_29381 [Mycobacterium canettii CIPT 140010059] gi|340006097|emb|CCC45269.1| conserved hypothetical alanine and arginine rich protein [Mycobacterium canettii CIPT 140010059] Length=626 Score = 1253 bits (3243), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/626 (99%), Positives = 624/626 (99%), Gaps = 0/626 (0%) Query 1 VRVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT 60 +RVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT Sbjct 1 MRVTRLVDAESTRCDVGPAPKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSAT 60 Query 61 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPT 120 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRY TVEQVTVVVPT Sbjct 61 FNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYRTVEQVTVVVPT 120 Query 121 EHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL 180 EHLKVQWAHAAAAHGL+LDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL Sbjct 121 EHLKVQWAHAAAAHGLALDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTL 180 Query 181 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ 240 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ Sbjct 181 VVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQ 240 Query 241 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD 300 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD Sbjct 241 ADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALD 300 Query 301 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD 360 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD Sbjct 301 PEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSD 360 Query 361 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR 420 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR Sbjct 361 DPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSR 420 Query 421 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER 480 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER Sbjct 421 RPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAER 480 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR Sbjct 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 Query 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGG Sbjct 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGG 600 Query 601 PPIAAATRAQIKARIDALRQLNSERS 626 PPIAAATRAQIKARIDALRQLNSERS Sbjct 601 PPIAAATRAQIKARIDALRQLNSERS 626 >gi|289755030|ref|ZP_06514408.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289695617|gb|EFD63046.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=627 Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 606/607 (99%), Positives = 606/607 (99%), Gaps = 0/607 (0%) Query 20 PKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGT 79 PKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGT Sbjct 21 PKSVAMLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGT 80 Query 80 QPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLD 139 QPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLD Sbjct 81 QPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLD 140 Query 140 PKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAI 199 PKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAI Sbjct 141 PKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAI 200 Query 200 REAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPV 259 REAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPV Sbjct 201 REAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPV 260 Query 260 VFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQ 319 VFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQ Sbjct 261 VFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQ 320 Query 320 LRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWL 379 LRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWL Sbjct 321 LRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWL 380 Query 380 VAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQL 439 VAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQL Sbjct 381 VAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQL 440 Query 440 ASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGS 499 ASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGS Sbjct 441 ASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGS 500 Query 500 SFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASA 559 SFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASA Sbjct 501 SFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASA 560 Query 560 SVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALR 619 SVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGGPPIAAATRAQIKARIDALR Sbjct 561 SVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGGPPIAAATRAQIKARIDALR 620 Query 620 QLNSERS 626 QLNSERS Sbjct 621 QLNSERS 627 >gi|308406006|ref|ZP_07494742.2| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu012] gi|19863005|sp|Q10966.3|Y2917_MYCTU RecName: Full=Uncharacterized protein Rv2917/MT2985 gi|308364856|gb|EFP53707.1| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu012] Length=602 Score = 1214 bits (3141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 602/602 (100%), Positives = 602/602 (100%), Gaps = 0/602 (0%) Query 25 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 84 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF Sbjct 1 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 60 Query 85 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 144 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN Sbjct 61 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 120 Query 145 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 204 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG Sbjct 121 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 180 Query 205 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 264 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY Sbjct 181 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 240 Query 265 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 324 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV Sbjct 241 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 300 Query 325 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 384 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM Sbjct 301 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 360 Query 385 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 444 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE Sbjct 361 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 420 Query 445 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 504 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA Sbjct 421 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 480 Query 505 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 564 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ Sbjct 481 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 540 Query 565 LRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSE 624 LRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSE Sbjct 541 LRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSE 600 Query 625 RS 626 RS Sbjct 601 RS 602 >gi|308232281|ref|ZP_07415542.2| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu001] gi|308369899|ref|ZP_07419449.2| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu002] gi|308371175|ref|ZP_07424074.2| conserved alanine and arginine rich protein [Mycobacterium tuberculosis SUMu003] 17 more sequence titles Length=602 Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 601/602 (99%), Positives = 601/602 (99%), Gaps = 0/602 (0%) Query 25 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 84 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF Sbjct 1 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 60 Query 85 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 144 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN Sbjct 61 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 120 Query 145 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 204 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG Sbjct 121 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 180 Query 205 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 264 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY Sbjct 181 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 240 Query 265 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 324 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV Sbjct 241 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 300 Query 325 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 384 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM Sbjct 301 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 360 Query 385 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 444 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE Sbjct 361 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 420 Query 445 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 504 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA Sbjct 421 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 480 Query 505 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 564 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ Sbjct 481 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 540 Query 565 LRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSE 624 LRDLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGGPPIAAATRAQIKARIDALRQLNSE Sbjct 541 LRDLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGGPPIAAATRAQIKARIDALRQLNSE 600 Query 625 RS 626 RS Sbjct 601 RS 602 >gi|339299369|gb|AEJ51479.1| hypothetical protein CCDC5180_2642 [Mycobacterium tuberculosis CCDC5180] Length=602 Score = 1210 bits (3130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/602 (99%), Positives = 601/602 (99%), Gaps = 0/602 (0%) Query 25 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 84 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF Sbjct 1 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 60 Query 85 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 144 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN Sbjct 61 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 120 Query 145 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 204 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG Sbjct 121 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 180 Query 205 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 264 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY Sbjct 181 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 240 Query 265 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 324 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV Sbjct 241 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 300 Query 325 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 384 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM Sbjct 301 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 360 Query 385 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 444 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE Sbjct 361 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 420 Query 445 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 504 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA Sbjct 421 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 480 Query 505 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 564 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ Sbjct 481 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 540 Query 565 LRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSE 624 LRDLRRELHTLVSIAH+RTGKPHGWIHDE RRRCGGPPIAAATRAQIKARIDALRQLNSE Sbjct 541 LRDLRRELHTLVSIAHYRTGKPHGWIHDELRRRCGGPPIAAATRAQIKARIDALRQLNSE 600 Query 625 RS 626 RS Sbjct 601 RS 602 >gi|15842460|ref|NP_337497.1| RNA helicase, putative [Mycobacterium tuberculosis CDC1551] gi|13882764|gb|AAK47311.1| RNA helicase, putative [Mycobacterium tuberculosis CDC1551] gi|323718528|gb|EGB27699.1| alanine and arginine rich protein [Mycobacterium tuberculosis CDC1551A] Length=602 Score = 1208 bits (3126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/602 (99%), Positives = 600/602 (99%), Gaps = 0/602 (0%) Query 25 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 84 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF Sbjct 1 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 60 Query 85 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 144 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN Sbjct 61 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 120 Query 145 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 204 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG Sbjct 121 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 180 Query 205 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 264 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY Sbjct 181 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 240 Query 265 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 324 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV Sbjct 241 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 300 Query 325 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRM 384 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGT RWLVAVRM Sbjct 301 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTGRWLVAVRM 360 Query 385 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 444 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE Sbjct 361 VSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALE 420 Query 445 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 504 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA Sbjct 421 VQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTA 480 Query 505 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 564 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ Sbjct 481 TPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQ 540 Query 565 LRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSE 624 LRDLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGGPPIAAATRAQIKARIDALRQLNSE Sbjct 541 LRDLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGGPPIAAATRAQIKARIDALRQLNSE 600 Query 625 RS 626 RS Sbjct 601 RS 602 >gi|254233007|ref|ZP_04926334.1| conserved hypothetical alanine and arginine rich protein [Mycobacterium tuberculosis C] gi|124602066|gb|EAY61076.1| conserved hypothetical alanine and arginine rich protein [Mycobacterium tuberculosis C] Length=562 Score = 1128 bits (2918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/562 (99%), Positives = 561/562 (99%), Gaps = 0/562 (0%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 +RGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK Sbjct 1 MRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 60 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD Sbjct 61 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 120 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT Sbjct 121 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 180 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE Sbjct 181 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 240 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS Sbjct 241 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 300 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE Sbjct 301 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 360 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA Sbjct 361 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 420 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ Sbjct 421 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 480 Query 545 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIA 604 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGGPPIA Sbjct 481 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGGPPIA 540 Query 605 AATRAQIKARIDALRQLNSERS 626 AATRAQIKARIDALRQLNSERS Sbjct 541 AATRAQIKARIDALRQLNSERS 562 >gi|289571104|ref|ZP_06451331.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289544858|gb|EFD48506.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=545 Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/540 (99%), Positives = 539/540 (99%), Gaps = 0/540 (0%) Query 87 VATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSN 146 VATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSN Sbjct 6 VATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSN 65 Query 147 PQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFGDA 206 PQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFGDA Sbjct 66 PQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFGDA 125 Query 207 TRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAYSG 266 TRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAYSG Sbjct 126 TRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAYSG 185 Query 267 QARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHVPD 326 QARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHVPD Sbjct 186 QARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHVPD 245 Query 327 AGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVS 386 AGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVS Sbjct 246 AGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVS 305 Query 387 EGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALEVQ 446 EGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALEVQ Sbjct 306 EGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALEVQ 365 Query 447 RNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTATP 506 RNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTATP Sbjct 366 RNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTATP 425 Query 507 TGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQLR 566 TGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQLR Sbjct 426 TGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASASVHGQLR 485 Query 567 DLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALRQLNSERS 626 DLRRELHTLVSIAHHRTGKPHGWIHDE RRRCGGPPIAAATRAQIKARIDALRQLNSERS Sbjct 486 DLRRELHTLVSIAHHRTGKPHGWIHDELRRRCGGPPIAAATRAQIKARIDALRQLNSERS 545 >gi|183981803|ref|YP_001850094.1| hypothetical protein MMAR_1790 [Mycobacterium marinum M] gi|183175129|gb|ACC40239.1| conserved hypothetical alanine and arginine rich protein [Mycobacterium marinum M] Length=578 Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/561 (87%), Positives = 515/561 (92%), Gaps = 0/561 (0%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRALV+YLGTQPRDFLAVATPGSGKT+FALRIAAE L EQ+TVVVPTEHL Sbjct 16 PLRSWQRRALVKYLGTQPRDFLAVATPGSGKTAFALRIAAEALGQRAAEQITVVVPTEHL 75 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA A A GLSLDPKF+NSN QTS EYHGV+VTYAQVA+HPTLHRVRTE RKTLV+F Sbjct 76 KTQWAQAGARLGLSLDPKFSNSNAQTSAEYHGVVVTYAQVAAHPTLHRVRTEQRKTLVIF 135 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHHGGDAKTWGDAIREAF DA+RRLALTGTPFRSDDSPIPFV+Y+PD +GVLRSQADH Sbjct 136 DEIHHGGDAKTWGDAIREAFSDASRRLALTGTPFRSDDSPIPFVNYEPDGEGVLRSQADH 195 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEE+EARLGEPLSAEQTARAWRTALDP G Sbjct 196 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEHEARLGEPLSAEQTARAWRTALDPAG 255 Query 304 EWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 EWMPAVI AADRRLRQLR HVPDAGGMIIASDRT ARAYA LL MT E PTVVLSDDPG Sbjct 256 EWMPAVIAAADRRLRQLREHVPDAGGMIIASDRTAARAYAALLQKMTGETPTVVLSDDPG 315 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SS RITEF+ GTSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQAIGRFVRSRRPG Sbjct 316 SSERITEFSNGTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAIGRFVRSRRPG 375 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFT 483 ETASIF+PSVPNLLQLAS LE QRNHVLG+PHRES DPLDGDPAT+TQ E+G E+GFT Sbjct 376 ETASIFLPSVPNLLQLASELEAQRNHVLGKPHRESLDDPLDGDPATKTQDEQGDLEKGFT 435 Query 484 ALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA 543 +LGADAELDQVIFDGSSFGTATP GSDEEADYLGIPGLLDA+QMRALLHRRQDEQL+KRA Sbjct 436 SLGADAELDQVIFDGSSFGTATPAGSDEEADYLGIPGLLDADQMRALLHRRQDEQLQKRA 495 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 QLQ+G TQ T A+ HGQ+R+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 496 QLQQGVTQVGTLAEPATTHGQIRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPI 555 Query 604 AAATRAQIKARIDALRQLNSE 624 AAATR Q+KARIDA+RQLN+E Sbjct 556 AAATRDQLKARIDAVRQLNAE 576 >gi|118617612|ref|YP_905944.1| hypothetical protein MUL_2038 [Mycobacterium ulcerans Agy99] gi|118569722|gb|ABL04473.1| conserved hypothetical alanine and arginine rich protein [Mycobacterium ulcerans Agy99] Length=578 Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/561 (86%), Positives = 513/561 (92%), Gaps = 0/561 (0%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRALV+YLGTQPRDFLAVATPGSGKT FALRIAAE L EQ+TVVVPTEHL Sbjct 16 PLRSWQRRALVKYLGTQPRDFLAVATPGSGKTVFALRIAAEALGQRAAEQITVVVPTEHL 75 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA A A GLSLDPKF+NSN QTS EYHGV+VTYAQVA+HPTLHRVRTE RKTLV+F Sbjct 76 KTQWAQAGARLGLSLDPKFSNSNAQTSAEYHGVVVTYAQVAAHPTLHRVRTEQRKTLVIF 135 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHHGGDAKTWGDAIREAF DA+RRLALTGTPFRSDDSPIPFV+Y+PD +GVLRSQADH Sbjct 136 DEIHHGGDAKTWGDAIREAFSDASRRLALTGTPFRSDDSPIPFVNYEPDGEGVLRSQADH 195 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEE+EARLGEPLSAEQTARAWRTALDP G Sbjct 196 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEHEARLGEPLSAEQTARAWRTALDPAG 255 Query 304 EWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 EWMPAVI AADRRLRQLR HVPDAGGMIIASDRT ARAYA LL MT E PTVVLSDDPG Sbjct 256 EWMPAVIAAADRRLRQLREHVPDAGGMIIASDRTAARAYAALLQKMTGETPTVVLSDDPG 315 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SS RITEF+ GTSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQAIGRFVRSRRPG Sbjct 316 SSERITEFSNGTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAIGRFVRSRRPG 375 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFT 483 ETASIF+PSVPNLLQLAS LE QRNHVLG+PHRES DPLDGDPAT+TQ E+G E+GFT Sbjct 376 ETASIFLPSVPNLLQLASELEAQRNHVLGKPHRESLDDPLDGDPATKTQDEQGDLEKGFT 435 Query 484 ALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA 543 +LGADAELDQVIFDGSSFGTATP GSDEEADYLGIPGLLDA+QMRA LHRRQDEQL+KRA Sbjct 436 SLGADAELDQVIFDGSSFGTATPAGSDEEADYLGIPGLLDADQMRASLHRRQDEQLQKRA 495 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 QLQ+G TQ T A+ HGQ+R+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 496 QLQQGVTQVGTLAEPATTHGQIRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPI 555 Query 604 AAATRAQIKARIDALRQLNSE 624 AAATR Q+KARIDA+RQLN+E Sbjct 556 AAATRDQLKARIDAVRQLNAE 576 >gi|240169628|ref|ZP_04748287.1| hypothetical protein MkanA1_09962 [Mycobacterium kansasii ATCC 12478] Length=573 Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/562 (86%), Positives = 516/562 (92%), Gaps = 3/562 (0%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLRGWQRRA+V+YL +PRDFLAVATPGSGKT+FALRI AELL + VEQVTVVVPTEHL Sbjct 14 PLRGWQRRAIVKYLAAEPRDFLAVATPGSGKTTFALRITAELLSHRAVEQVTVVVPTEHL 73 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K+QWA AAA HGL+LDP+F NSNPQTSPEYHGV+VTYAQVA+HPTLHRVRTE RKTLVVF Sbjct 74 KIQWAQAAARHGLALDPRFTNSNPQTSPEYHGVVVTYAQVAAHPTLHRVRTEQRKTLVVF 133 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHHGGDAK WGDAIREAFGDA+RRL LTGTPFRSDDSPIPFVSY PD DGVLRSQADH Sbjct 134 DEIHHGGDAKAWGDAIREAFGDASRRLGLTGTPFRSDDSPIPFVSYAPDGDGVLRSQADH 193 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEE+EARLGEPLSAEQTARAWRTALDP G Sbjct 194 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEHEARLGEPLSAEQTARAWRTALDPAG 253 Query 304 EWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 EWMPAVITAAD+RLRQLRA VPDAGGMIIASDRT ARAYA LLT +T+E PTVVLSDDPG Sbjct 254 EWMPAVITAADQRLRQLRAQVPDAGGMIIASDRTAARAYAGLLTKLTSEAPTVVLSDDPG 313 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SS+RI EFA T+RWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQA+GRFVRSRRPG Sbjct 314 SSSRIAEFASSTNRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPG 373 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFT 483 ETASIF+PSVP+LLQLAS LE QRNHVLG+PHRES DPL GDPATRTQTE G E GFT Sbjct 374 ETASIFLPSVPSLLQLASELEAQRNHVLGKPHRESGDDPLTGDPATRTQTEPG--ETGFT 431 Query 484 ALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA 543 ALGADAELDQVIFDGSSFGTATP GSDEEADYLGIPGLLDAEQMRALLHRRQDEQL++RA Sbjct 432 ALGADAELDQVIFDGSSFGTATPAGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLQRRA 491 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 +LQ A Q + A+ HGQLR+LRREL++LV+IAHHRTG+PHGWIH+E RRRCGGPPI Sbjct 492 RLQHAAAQSGPA-QPATTHGQLRELRRELNSLVAIAHHRTGRPHGWIHNELRRRCGGPPI 550 Query 604 AAATRAQIKARIDALRQLNSER 625 AAATR Q+KARI+AL QLN+E+ Sbjct 551 AAATREQLKARIEALHQLNAEQ 572 >gi|15827856|ref|NP_302119.1| hypothetical protein ML1624 [Mycobacterium leprae TN] gi|221230333|ref|YP_002503749.1| hypothetical protein MLBr_01624 [Mycobacterium leprae Br4923] gi|18202016|sp|O33011.1|Y1624_MYCLE RecName: Full=Uncharacterized protein ML1624 gi|2251152|emb|CAB10612.1| hypothetical protein MLCB250.18c [Mycobacterium leprae] gi|13093408|emb|CAC30575.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933440|emb|CAR71719.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=596 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/564 (82%), Positives = 509/564 (91%), Gaps = 1/564 (0%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLRGWQRRA+V+YL +QPRDFLAVATPGSGKT+FALR+ ELL H VEQVTVVVPTEHL Sbjct 33 PLRGWQRRAMVKYLASQPRDFLAVATPGSGKTTFALRVMTELLNSHAVEQVTVVVPTEHL 92 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 KVQW AAA HGL+LDPKF+N+NP+TSPEYHGV +TYAQVA+HPTLHRVRTE R+TLV+F Sbjct 93 KVQWTRAAATHGLALDPKFSNTNPRTSPEYHGVTMTYAQVAAHPTLHRVRTEGRRTLVIF 152 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHHGG+AK WGDAIREAF DATRRLALTGTPFRSDD PIPFV+Y DADG++ SQADH Sbjct 153 DEIHHGGNAKAWGDAIREAFSDATRRLALTGTPFRSDDKPIPFVTYALDADGLMHSQADH 212 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 TY YAE LADGVVRPVVFL YSGQARWR+SAGEE+ ARLGEPLSAEQTARAWRTALDP G Sbjct 213 TYSYAEGLADGVVRPVVFLVYSGQARWRNSAGEEHAARLGEPLSAEQTARAWRTALDPSG 272 Query 304 EWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 EWMPAVI+AAD+RLRQLR HVPDAGGMIIASD+T ARAYA LL MT+E PT+VLSDDPG Sbjct 273 EWMPAVISAADQRLRQLRTHVPDAGGMIIASDQTAARAYANLLAQMTSETPTLVLSDDPG 332 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SSARITEFA+ TS+WL+AVRMVSEGVD+PRLSVG+YAT+ASTPLFFAQAIGRFVRSR PG Sbjct 333 SSARITEFAKNTSQWLIAVRMVSEGVDIPRLSVGIYATSASTPLFFAQAIGRFVRSRHPG 392 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFT 483 ETASIFVPSVPNLLQLAS LE QRNHVLG+PHRES +PL G+PAT TQTE+ E+ FT Sbjct 393 ETASIFVPSVPNLLQLASELETQRNHVLGKPHRESTDNPLGGNPATMTQTEQDDTEKYFT 452 Query 484 ALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA 543 A+GADAELDQ+IFDGSSFGTATP GS+EEA YLGIPGLLDA+QMRALLHRRQ+EQL+KR Sbjct 453 AIGADAELDQIIFDGSSFGTATPAGSEEEAYYLGIPGLLDADQMRALLHRRQNEQLQKRT 512 Query 544 QLQKGATQPA-TSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPP 602 Q+ ++ P TSGA ASVHGQLR+LRREL++LVSIAHH TGKPHGWIH+E RRRCGGPP Sbjct 513 AAQQASSTPDRTSGAPASVHGQLRELRRELNSLVSIAHHHTGKPHGWIHNELRRRCGGPP 572 Query 603 IAAATRAQIKARIDALRQLNSERS 626 IAAAT Q+KARIDA+RQLN+E S Sbjct 573 IAAATHDQLKARIDAVRQLNAEPS 596 >gi|254821191|ref|ZP_05226192.1| hypothetical protein MintA_14737 [Mycobacterium intracellulare ATCC 13950] Length=585 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/563 (83%), Positives = 509/563 (91%), Gaps = 1/563 (0%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VEQVTVVVPTEHLK Sbjct 23 LRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAVEQVTVVVPTEHLK 82 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AAA HG++LDP+F+N+NP+ +PEYHGVMVTYAQVA+HPTLHRVRTE RKTLVVFD Sbjct 83 VQWAQAAARHGIALDPRFSNANPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRKTLVVFD 142 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAF DATRRLALTGTPFRSDDSPIPFV+Y+ DG+ RSQADHT Sbjct 143 EIHHGGDAKTWGDAIREAFDDATRRLALTGTPFRSDDSPIPFVTYEAGPDGIRRSQADHT 202 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY +ALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPLSA QTARAWRTALDP GE Sbjct 203 YGYTDALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLSAAQTARAWRTALDPAGE 262 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVITAAD RLRQLR HVPDAGGMIIASD+T AR+YA LLT +T E PT+VLSDDPGS Sbjct 263 WMPAVITAADLRLRQLRTHVPDAGGMIIASDQTAARSYATLLTKLTGEAPTLVLSDDPGS 322 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI+EFA TSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQAIGRFVRSRRPGE Sbjct 323 SARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAIGRFVRSRRPGE 382 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 ASIFVPSVPNLLQLAS LE QRNHVLG PHRES DPLDGDPAT+TQ E+ ++GFT+ Sbjct 383 IASIFVPSVPNLLQLASELEAQRNHVLGEPHRESEGDPLDGDPATKTQDEKSDLDKGFTS 442 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQ+IFDGSSFGTA P GSDEEADYLGIPGLLDAEQMRALLH+RQDEQL++RA+ Sbjct 443 LGADAELDQLIFDGSSFGTAAPAGSDEEADYLGIPGLLDAEQMRALLHQRQDEQLQRRAR 502 Query 545 LQKGATQP-ATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 L + P A SA+VHGQLR+LRREL+ LVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 503 LHQETGSPGAVETPSATVHGQLRELRRELNALVSIAHHRTGKPHGWIHNELRRRCGGPPI 562 Query 604 AAATRAQIKARIDALRQLNSERS 626 AAA+R Q++ARIDA+R+LN+E S Sbjct 563 AAASREQLRARIDAVRRLNAETS 585 >gi|41409083|ref|NP_961919.1| hypothetical protein MAP2985 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397442|gb|AAS05302.1| hypothetical protein MAP_2985 [Mycobacterium avium subsp. paratuberculosis K-10] Length=590 Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/563 (84%), Positives = 508/563 (91%), Gaps = 7/563 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VEQVTVVVPTEHLK Sbjct 34 LRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAVEQVTVVVPTEHLK 93 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AAA HGL+LDP+F+NSNP+ +PEYHGVMVTYAQVA+HPTLHRVRTE R+TLV+FD Sbjct 94 VQWAQAAARHGLALDPRFSNSNPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFD 153 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFV Y+ DGV RSQA+HT Sbjct 154 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHT 213 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY EALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPLSAEQTARAWRTALDP GE Sbjct 214 YGYPEALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLSAEQTARAWRTALDPAGE 273 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RLRQLRAH+PDAGGMIIASDR ARAYA LLT +T+E PTVVLSDDPGS Sbjct 274 WMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTKITSETPTVVLSDDPGS 333 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI+EFA TSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQA+GRFVRSRRPGE Sbjct 334 SARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGE 393 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLLQLAS LE QRNHVLG PHR S DPLDGDPATRTQ E+ + GFT+ Sbjct 394 TASIFLPSVPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTS 453 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA- 543 LGADAELDQVIFDGSSFGTA P GS+EEADYLGIPGLLDAEQMRALLH+RQDEQL++RA Sbjct 454 LGADAELDQVIFDGSSFGTAAPAGSEEEADYLGIPGLLDAEQMRALLHQRQDEQLQRRAG 513 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 Q G PAT VHGQLR+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 514 QPSAGDAPPAT------VHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPI 567 Query 604 AAATRAQIKARIDALRQLNSERS 626 AAA+R Q++ARIDA+R+LN+E S Sbjct 568 AAASREQLRARIDAVRRLNAEHS 590 >gi|296171451|ref|ZP_06852737.1| type III restriction enzyme, res subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894137|gb|EFG73897.1| type III restriction enzyme, res subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=577 Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/562 (84%), Positives = 504/562 (90%), Gaps = 5/562 (0%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VEQ+TVVVPTEHLK Sbjct 21 LRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLSQRAVEQITVVVPTEHLK 80 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AAA HG++LDP+F+NSN TS EYHGVMVTYAQVA+HPTLHRVRTE RKTLVVFD Sbjct 81 VQWALAAARHGIALDPRFSNSNAHTSGEYHGVMVTYAQVAAHPTLHRVRTEQRKTLVVFD 140 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFV+Y+ ADGV RSQADHT Sbjct 141 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVAYEAGADGVRRSQADHT 200 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYAEALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPL+AEQTARAWRTALDP GE Sbjct 201 YGYAEALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLTAEQTARAWRTALDPAGE 260 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD RLRQ RAHVPDAGGMIIASDRT ARAYA LLT +T E PTVVLSDDPGS Sbjct 261 WMPAVIAAADERLRQKRAHVPDAGGMIIASDRTAARAYATLLTRLTGEAPTVVLSDDPGS 320 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI+EFA GTSRWLVAVRMVSEGVDVPRL+VG+YAT+ASTPLFFAQAIGRFVRSRRPGE Sbjct 321 SARISEFAAGTSRWLVAVRMVSEGVDVPRLAVGIYATSASTPLFFAQAIGRFVRSRRPGE 380 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TAS+F+PSVPNLLQLAS LE QRNHVLG PHR A DPLDGDPA RTQTE+ + GFTA Sbjct 381 TASVFLPSVPNLLQLASELEAQRNHVLGEPHR-PAEDPLDGDPAVRTQTEKADTDTGFTA 439 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQVIFDGSSFGTA P GSDEEADYLGIPGLLDAEQMRALLHRRQDEQL++RA Sbjct 440 LGADAELDQVIFDGSSFGTAAPAGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLQRRA- 498 Query 545 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIA 604 PA A S+HGQLR+LRREL++LVS HHRTGKPHGWIH E RRRCGGPPIA Sbjct 499 ---AQAVPAAVSAPPSMHGQLRELRRELNSLVSATHHRTGKPHGWIHSELRRRCGGPPIA 555 Query 605 AATRAQIKARIDALRQLNSERS 626 AA+R QI+ARI+ALR+LN+E S Sbjct 556 AASREQIQARIEALRRLNAEHS 577 >gi|336459024|gb|EGO37974.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp. paratuberculosis S397] Length=579 Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/563 (83%), Positives = 507/563 (91%), Gaps = 7/563 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VEQVTVVVPTEHLK Sbjct 23 LRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAVEQVTVVVPTEHLK 82 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AAA HGL+LDP+F+NSNP+ +PEYHG+MVTYAQVA+HPTLHRVRTE R+TLV+FD Sbjct 83 VQWAQAAARHGLALDPRFSNSNPRIAPEYHGMMVTYAQVAAHPTLHRVRTEQRRTLVIFD 142 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFV Y+ DGV RSQA+HT Sbjct 143 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHT 202 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY EALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPLSAEQTARAWRTALDP GE Sbjct 203 YGYPEALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLSAEQTARAWRTALDPAGE 262 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RLRQLRAH+PDAGGMIIASDR ARAYA LLT +T+E PTVVLSDDPGS Sbjct 263 WMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTKITSETPTVVLSDDPGS 322 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI+EFA TSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQA+GRFVRSRRPGE Sbjct 323 SARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGE 382 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLLQLAS LE QRNHVLG PHR S DPLDGDPATRTQ E+ + GFT+ Sbjct 383 TASIFLPSVPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTS 442 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA- 543 LGADAELDQVIFDGSSFGTA P GS+EEADYLGIPGLLDAEQMRALLH+RQDEQL++RA Sbjct 443 LGADAELDQVIFDGSSFGTAAPAGSEEEADYLGIPGLLDAEQMRALLHQRQDEQLQRRAG 502 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 Q G PAT V GQLR+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 503 QPSAGDAPPAT------VRGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPI 556 Query 604 AAATRAQIKARIDALRQLNSERS 626 AAA+R Q++ARIDA+R+LN+E S Sbjct 557 AAASREQLRARIDAVRRLNAEHS 579 >gi|342858231|ref|ZP_08714886.1| hypothetical protein MCOL_05136 [Mycobacterium colombiense CECT 3035] gi|342133935|gb|EGT87115.1| hypothetical protein MCOL_05136 [Mycobacterium colombiense CECT 3035] Length=583 Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/561 (82%), Positives = 504/561 (90%), Gaps = 2/561 (0%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VE +TVVVPTEHLK Sbjct 25 LRGWQRRALVKYLAAQPRDFLAVATPGSGKTTFALRVAAELLGQRAVEHITVVVPTEHLK 84 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AA +GL+LDPKF+NSN + +PEYHGVMVTYAQVA+HPTLHRVRTE RKTLVVFD Sbjct 85 VQWAQAAQRYGLALDPKFSNSNARIAPEYHGVMVTYAQVAAHPTLHRVRTEQRKTLVVFD 144 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFV+Y+ DG+ RSQADHT Sbjct 145 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVTYEAGPDGIRRSQADHT 204 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY +ALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPLSAEQTARAWRTALDP GE Sbjct 205 YGYTDALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLSAEQTARAWRTALDPAGE 264 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVITAAD RLRQLR H+PDAGGMIIASD+T ARAYA LLT +T E PT+VLSDDPGS Sbjct 265 WMPAVITAADLRLRQLRTHIPDAGGMIIASDQTAARAYAVLLTKLTGEAPTLVLSDDPGS 324 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI++FA TSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQAIGRFVRSRRPGE Sbjct 325 SARISDFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAIGRFVRSRRPGE 384 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 ASIFVPSVPNLLQLAS LE QRNHVLG PHR S DPL+ DPAT+ Q E+ ++GFT+ Sbjct 385 IASIFVPSVPNLLQLASELEAQRNHVLGEPHRVSEGDPLENDPATKAQDEKSDLDKGFTS 444 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQ+IFDGSSFGTA GSDEEADYLGIPGLLDA+QMRALLH+RQ+EQL+KRA Sbjct 445 LGADAELDQLIFDGSSFGTAAAAGSDEEADYLGIPGLLDADQMRALLHQRQEEQLQKRA- 503 Query 545 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIA 604 Q+ + P SA+VHGQLR+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPIA Sbjct 504 -QQAGSGPGVEAPSATVHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPIA 562 Query 605 AATRAQIKARIDALRQLNSER 625 AA+R Q++ARIDA+RQLN+ER Sbjct 563 AASREQLRARIDAVRQLNAER 583 >gi|118462616|ref|YP_882944.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium 104] gi|118163903|gb|ABK64800.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium 104] Length=579 Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/563 (83%), Positives = 507/563 (91%), Gaps = 7/563 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VEQVTVVVPTEHLK Sbjct 23 LRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAVEQVTVVVPTEHLK 82 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AA HGL+LDP+F+NSNP+ +PEYHGVMVTYAQVA+HPTLHRVRTE R+TLV+FD Sbjct 83 VQWAQAAERHGLALDPRFSNSNPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFD 142 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFV Y+ DGV RSQADHT Sbjct 143 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQADHT 202 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY EALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPLSAEQTARAWRTALDP GE Sbjct 203 YGYPEALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLSAEQTARAWRTALDPAGE 262 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RLRQLRAH+PDAGGMIIASDR ARAYA LLT +T+E PTVVLSDDPGS Sbjct 263 WMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTEITSETPTVVLSDDPGS 322 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI+EFA TSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQA+GRFVRSRRPGE Sbjct 323 SARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGE 382 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLLQLAS LE QRNHVLG PHR S DPLDGDPATRTQ E+ + GFT+ Sbjct 383 TASIFLPSVPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTS 442 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA- 543 LGADAELDQVIFDGSSFGTA P GS+EEADYLGIPGLLDAEQMRALLH+RQD+QL++RA Sbjct 443 LGADAELDQVIFDGSSFGTAAPAGSEEEADYLGIPGLLDAEQMRALLHQRQDQQLQRRAG 502 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 Q G PAT VHGQLR+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 503 QPSAGDAPPAT------VHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPI 556 Query 604 AAATRAQIKARIDALRQLNSERS 626 AAA+R Q++ARIDA+R+LN+E S Sbjct 557 AAASREQLRARIDAVRRLNAEHS 579 >gi|254776217|ref|ZP_05217733.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium subsp. avium ATCC 25291] Length=579 Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/563 (83%), Positives = 506/563 (90%), Gaps = 7/563 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL QPRDFLAVATPGSGKT+FALR+AAELL VEQVTVVVPTEHLK Sbjct 23 LRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAVEQVTVVVPTEHLK 82 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA AA HGL+LDP+F+NSNP+ +PEYHGVMVTYAQVA+HPTLHRVRTE R+TLV+FD Sbjct 83 VQWAQAAERHGLALDPRFSNSNPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFD 142 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFV Y+ DGV RSQADHT Sbjct 143 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQADHT 202 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY EALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPLSAEQTARAWRTALDP GE Sbjct 203 YGYPEALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLSAEQTARAWRTALDPAGE 262 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RLRQLRAH+PDAGGMIIASDR ARAYA LLT +T+E PTVVLSDDPGS Sbjct 263 WMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTEITSETPTVVLSDDPGS 322 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 SARI+EFA TSRWLVAVRMVSEGVDVPRLSVG+YAT+ASTPLFFAQA+GRFVRSRRPGE Sbjct 323 SARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGE 382 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLLQLAS LE QRNHVLG PHR S DPLDGDPATRTQ E+ + GFT+ Sbjct 383 TASIFLPSVPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTS 442 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA- 543 LGADAELDQVIFDGSSFGTA P S+EEADYLGIPGLLDAEQMRALLH+RQD+QL++RA Sbjct 443 LGADAELDQVIFDGSSFGTAAPARSEEEADYLGIPGLLDAEQMRALLHQRQDQQLQRRAG 502 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 Q G PAT VHGQLR+LRREL+TLVSIAHHRTGKPHGWIH+E RRRCGGPPI Sbjct 503 QPSAGDAPPAT------VHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRRRCGGPPI 556 Query 604 AAATRAQIKARIDALRQLNSERS 626 AAA+R Q++ARIDA+R+LN+E S Sbjct 557 AAASREQLRARIDAVRRLNAEHS 579 >gi|120401774|ref|YP_951603.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii PYR-1] gi|119954592|gb|ABM11597.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii PYR-1] Length=566 Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/562 (77%), Positives = 483/562 (86%), Gaps = 8/562 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YL PRDFLAVATPG+GKT+FALRI AELL TVE VT+VVPTEHLK Sbjct 12 LRGWQRRALVKYLSAAPRDFLAVATPGAGKTTFALRIVAELLAEGTVEAVTIVVPTEHLK 71 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 +QWA AAA HG++LDPKF+NSN QTS +YHGV+VTYAQVASHPT HRVRTE RKTLVVFD Sbjct 72 IQWAQAAARHGIALDPKFSNSNSQTSSDYHGVVVTYAQVASHPTRHRVRTENRKTLVVFD 131 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAF DATRRLALTGTPFRSDDSPIPFV+Y+ DG RS+ADHT Sbjct 132 EIHHGGDAKSWGDAIREAFDDATRRLALTGTPFRSDDSPIPFVNYETGPDGFARSKADHT 191 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPV+F+AYSG+ARWRDSAGEE+ ARLGEPL+AEQTARAW+TALDP+GE Sbjct 192 YGYSDALADGVVRPVMFMAYSGEARWRDSAGEEHAARLGEPLTAEQTARAWKTALDPKGE 251 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RL+ LR HVPDAGGMIIASD+TTARAYA LL +T E PTVVLSDD G+ Sbjct 252 WMPAVIAAADKRLQGLRQHVPDAGGMIIASDQTTARAYADLLVKITGEAPTVVLSDDKGA 311 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 S RI+E++ GTSRWLVAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSRRPGE Sbjct 312 SDRISEYSAGTSRWLVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRRPGE 371 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLL LAS +E QRNHVLG+PHRE DPLD + + + E G E Sbjct 372 TASIFLPSVPNLLLLASEMEAQRNHVLGKPHREPLEDPLDAELREQKRDEPGEEENKIEY 431 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQVIFDGSSFGTATP GSDEEADYLGIPGLLDA+ MR LL RRQ+EQL KR Sbjct 432 LGADAELDQVIFDGSSFGTATPAGSDEEADYLGIPGLLDADSMRDLLRRRQEEQLTKRT- 490 Query 545 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIA 604 + G P T+ HGQLRDLR EL+TLVS+AHHRTG+PHGWIH+E RRRCGGPP+A Sbjct 491 -ESGLAVPKTT------HGQLRDLRSELNTLVSLAHHRTGRPHGWIHNELRRRCGGPPVA 543 Query 605 AATRAQIKARIDALRQLNSERS 626 AATR Q++ RI+A+R L E S Sbjct 544 AATREQLQERIEAVRVLQRELS 565 >gi|315442297|ref|YP_004075176.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] gi|315260600|gb|ADT97341.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length=574 Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/560 (77%), Positives = 480/560 (86%), Gaps = 8/560 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRALV+YL +PRDFLAVATPG+GKT+FALRI +ELL TV+ VT+VVPTEHLK Sbjct 20 LRSWQRRALVKYLTARPRDFLAVATPGAGKTTFALRIVSELLAEGTVDAVTIVVPTEHLK 79 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 +QWA AAA HG++LDPKF+NSN QTS EYHGV+VTYAQVASHP+ HRVRTE RKTLVVFD Sbjct 80 IQWAQAAARHGIALDPKFSNSNSQTSSEYHGVVVTYAQVASHPSRHRVRTENRKTLVVFD 139 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAF DATRRLALTGTPFRSDDS IPFV+Y+ DG RSQADHT Sbjct 140 EIHHGGDAKSWGDAIREAFDDATRRLALTGTPFRSDDSAIPFVTYETGPDGFQRSQADHT 199 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYA+ALADGVVRPV+F+AYSG+ARWRDSAGEE+ ARLGEPL+AEQTARAW+ ALDP+GE Sbjct 200 YGYADALADGVVRPVMFMAYSGEARWRDSAGEEHAARLGEPLTAEQTARAWKAALDPKGE 259 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RL+ R HVPDAGGMIIA+D+T ARAYA LL +T E PTVVLSDD G+ Sbjct 260 WMPAVIAAADKRLQGKRQHVPDAGGMIIATDQTAARAYAELLLKITGEAPTVVLSDDKGA 319 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 S RI++F+ GTSRWLVAVRMVSEGVDVPRLSVGVYAT+ASTPLFFAQAIGRFVRSRR GE Sbjct 320 SDRISQFSAGTSRWLVAVRMVSEGVDVPRLSVGVYATSASTPLFFAQAIGRFVRSRRAGE 379 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLL LAS +E QRNHVLG+PHRE+ DPLD + A + + E G E Sbjct 380 TASIFLPSVPNLLLLASEMEAQRNHVLGKPHRETLEDPLDAELAEQNRDEPGEEENKVEY 439 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQVIFDGSSFGTATP GSDEEADYLGIPGLLDA MR LL RRQDEQ++KR Sbjct 440 LGADAELDQVIFDGSSFGTATPAGSDEEADYLGIPGLLDAASMRDLLRRRQDEQMQKRT- 498 Query 545 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIA 604 + G T P T+ HGQLRDLR EL+TLVS+AHHRTG+PHGWIH+E RRRCGGPP+A Sbjct 499 -ESGVTAPKTT------HGQLRDLRSELNTLVSLAHHRTGRPHGWIHNELRRRCGGPPVA 551 Query 605 AATRAQIKARIDALRQLNSE 624 AATR Q++ RI+A+R L E Sbjct 552 AATREQLQERIEAVRVLQRE 571 >gi|145220750|ref|YP_001131428.1| type III restriction enzyme, res subunit [Mycobacterium gilvum PYR-GCK] gi|145213236|gb|ABP42640.1| type III restriction enzyme, res subunit [Mycobacterium gilvum PYR-GCK] Length=574 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/560 (77%), Positives = 479/560 (86%), Gaps = 8/560 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRALV+YL +PRDFLAVATPG+GKT+FALRI +ELL TV+ VT+VVPTEHLK Sbjct 20 LRSWQRRALVKYLTARPRDFLAVATPGAGKTTFALRIVSELLAEGTVDAVTIVVPTEHLK 79 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 +QWA AAA HG++LDPKF+NSN QTS EYHGV+VTYAQVASHP+ HRVRTE RKTLVVFD Sbjct 80 IQWAQAAARHGIALDPKFSNSNSQTSSEYHGVVVTYAQVASHPSRHRVRTENRKTLVVFD 139 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAF DATRRLALTGTPFRSDDS IPFV+Y+ DG RSQADHT Sbjct 140 EIHHGGDAKSWGDAIREAFDDATRRLALTGTPFRSDDSAIPFVTYETGPDGFQRSQADHT 199 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYA+ALADGVVRPV+F+AYSG+ARWRDSAGEE+ ARLGEPL+AEQTARAWR ALDP+GE Sbjct 200 YGYADALADGVVRPVMFMAYSGEARWRDSAGEEHAARLGEPLTAEQTARAWRAALDPKGE 259 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 WMPAVI AAD+RL+ R HVPDAGGMIIA+D+T ARAYA LL +T E PTVVLSDD G+ Sbjct 260 WMPAVIAAADKRLQGKRQHVPDAGGMIIATDQTAARAYAELLLKITGEAPTVVLSDDKGA 319 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 S RI++F+ GTSRWLVAVRMVSEGVDVPRLSVGVYAT+ASTPLFFAQAIGRFVRSRR GE Sbjct 320 SDRISQFSAGTSRWLVAVRMVSEGVDVPRLSVGVYATSASTPLFFAQAIGRFVRSRRAGE 379 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTA 484 TASIF+PSVPNLL LAS +E QRNHVLG+PHRE+ DPLD + A + + E G E Sbjct 380 TASIFLPSVPNLLLLASEMEAQRNHVLGKPHRETLEDPLDAELAEQNRDEPGEEENKVEY 439 Query 485 LGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQ 544 LGADAELDQVIFDGSSFGTATP GSDEEADYLGIPGLLDA MR LL RRQDEQ++KR Sbjct 440 LGADAELDQVIFDGSSFGTATPAGSDEEADYLGIPGLLDAASMRDLLRRRQDEQMQKRT- 498 Query 545 LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIA 604 + G P T+ HGQLRDLR EL+TLVS+AHHRTG+PHGWIH+E RRRCGGPP+A Sbjct 499 -ESGVIPPKTT------HGQLRDLRSELNTLVSLAHHRTGRPHGWIHNELRRRCGGPPVA 551 Query 605 AATRAQIKARIDALRQLNSE 624 AATR Q++ RI+A+R L E Sbjct 552 AATREQLQERIEAVRVLQRE 571 >gi|118468804|ref|YP_885270.1| DNA or RNA helicase of superfamily protein II [Mycobacterium smegmatis str. MC2 155] gi|118170091|gb|ABK70987.1| DNA or RNA helicase of superfamily protein II [Mycobacterium smegmatis str. MC2 155] Length=568 Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/570 (75%), Positives = 487/570 (86%), Gaps = 12/570 (2%) Query 58 SATFNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVV 117 SA LRGWQR+ALV+YL T+PRD+L VATPG+GKT+FALRIAAELL TV+++TVV Sbjct 5 SAPSTQALRGWQRKALVKYLTTKPRDYLLVATPGAGKTTFALRIAAELLADRTVDKITVV 64 Query 118 VPTEHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEAR 177 VPTEHLK+QWA +AA +G+SLDPKF+NSN QTS EY GV+VTYAQVASHPT HRVRTE Sbjct 65 VPTEHLKIQWAASAARNGISLDPKFSNSNSQTSSEYDGVVVTYAQVASHPTRHRVRTENY 124 Query 178 KTLVVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVL 237 +TLV+FDEIHHGGDAK+WGDA+REA+ DATRRLALTGTPFRSDDSPIPFV+Y+PD G + Sbjct 125 RTLVIFDEIHHGGDAKSWGDAMREAYSDATRRLALTGTPFRSDDSPIPFVNYEPDESGFM 184 Query 238 RSQADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRT 297 RSQADH YGYA+ALADGVVRPVVFLAYSG+ARWRDSAGEE+ ARLGEPL+AEQTARAWRT Sbjct 185 RSQADHVYGYADALADGVVRPVVFLAYSGEARWRDSAGEEHAARLGEPLTAEQTARAWRT 244 Query 298 ALDPEGEWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVV 357 AL+P GEWMPAVI AADRRL Q R HVPDAGGMIIA+++TTARAYA LLT +T E PTVV Sbjct 245 ALNPAGEWMPAVIKAADRRLEQKRQHVPDAGGMIIATNQTTARAYADLLTKITGETPTVV 304 Query 358 LSDDPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFV 417 LSDDP +S RI+++++ S+WLVAVRMVSEGVDVPRLSVGVYAT+ASTPLFFAQAIGRFV Sbjct 305 LSDDPSASDRISQYSESNSKWLVAVRMVSEGVDVPRLSVGVYATSASTPLFFAQAIGRFV 364 Query 418 RSRRPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDG---DPATRTQTE 474 RSRR GETASIF+PSVPNLL LAS +E QRNHVLG+PHRES D LD + A + + E Sbjct 365 RSRRQGETASIFLPSVPNLLLLASEMEAQRNHVLGKPHRES--DGLDDAALEEAEKRKDE 422 Query 475 RGGAERGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRR 534 + E GF LGADAELDQVIFDG+S+GTATP GSDEEADYLGIPGLLDAEQMR LL RR Sbjct 423 KSELENGFEYLGADAELDQVIFDGASWGTATPAGSDEEADYLGIPGLLDAEQMRDLLRRR 482 Query 535 QDEQLRKRAQL--QKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHD 592 Q+EQL KR + + GA P + HGQLR+LR+EL+ LV+IAHHRTGKPHGWIH+ Sbjct 483 QEEQLTKRTAVAAETGAPPPPR-----TTHGQLRELRKELNALVTIAHHRTGKPHGWIHN 537 Query 593 ERRRRCGGPPIAAATRAQIKARIDALRQLN 622 E RR CGGPP+AAAT Q+K RI+A+R+LN Sbjct 538 ELRRICGGPPVAAATTEQLKERIEAVRRLN 567 >gi|108797582|ref|YP_637779.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS] gi|119866669|ref|YP_936621.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS] gi|108768001|gb|ABG06723.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS] gi|119692758|gb|ABL89831.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS] Length=560 Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/560 (75%), Positives = 476/560 (85%), Gaps = 12/560 (2%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YLG +PRDFLAVATPG+GKT+FALRIA ELL TVE+VTVVVPTEHLK Sbjct 12 LRGWQRRALVRYLGAKPRDFLAVATPGAGKTTFALRIAGELLADGTVERVTVVVPTEHLK 71 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 +QWA AAA G++LDPKF+NS+ QTS EYHGV+VTYAQVASHPT HRVRTE +TLV+FD Sbjct 72 IQWAQAAARSGIALDPKFSNSSAQTSSEYHGVVVTYAQVASHPTRHRVRTENYRTLVIFD 131 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDA+REAF DATRRL+LTGTPFRSDDSPIPFV+Y PDA+G+LRS++DHT Sbjct 132 EIHHGGDAKTWGDAMREAFSDATRRLSLTGTPFRSDDSPIPFVNYVPDAEGLLRSESDHT 191 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYA+ALADGVVRPV+FLAYSG+ARWR SAGEE+ ARLGEPL+AEQTARAWRT LD GE Sbjct 192 YGYADALADGVVRPVIFLAYSGEARWRSSAGEEHAARLGEPLNAEQTARAWRTVLDANGE 251 Query 305 WMPAVITAADRRLRQLRA-HVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+ AAD RLRQLRA +PDAG MIIA+D+T AR YA LLT MT E PT+VLSDDPG Sbjct 252 WIPAVLKAADTRLRQLRAGGMPDAGAMIIATDQTAARQYAALLTKMTGEAPTLVLSDDPG 311 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SSARI E++ G + WLVAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSRRPG Sbjct 312 SSARIAEYSAGDTPWLVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRRPG 371 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFT 483 ETASIFVPSVP LL LAS +E QR+HVLG+PHRES D + R ++E +RGF Sbjct 372 ETASIFVPSVPTLLDLASQMEAQRDHVLGKPHRESMGDE---ELVERRRSEPTEEDRGFE 428 Query 484 ALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA 543 +LGA AELDQVIFDG+SFGTATP GS+EEADYLGIPGLLDA+QMR LL RRQ+EQL +R Sbjct 429 SLGASAELDQVIFDGASFGTATPAGSEEEADYLGIPGLLDADQMRDLLRRRQEEQLTRRT 488 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 G P T +GQLR+LR+EL+TLVS+AHHR KPHGWIH+E RR CGGPP+ Sbjct 489 --ASGEPPPVTP------YGQLRELRQELNTLVSLAHHRLNKPHGWIHNELRRICGGPPV 540 Query 604 AAATRAQIKARIDALRQLNS 623 AAAT Q++ARI A+R L + Sbjct 541 AAATSDQLQARIAAVRTLKA 560 >gi|126433205|ref|YP_001068896.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS] gi|126233005|gb|ABN96405.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS] Length=560 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/560 (75%), Positives = 475/560 (85%), Gaps = 12/560 (2%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LRGWQRRALV+YLG +PRDFLAVATPG+GKT+FALRIA ELL TVE+VTVVVPTEHLK Sbjct 12 LRGWQRRALVRYLGAKPRDFLAVATPGAGKTTFALRIAGELLADGTVERVTVVVPTEHLK 71 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 +QWA AAA G++LDPKF+NS+ QTS EYHGV+VTYAQVASHPT HRVRTE +TLV+FD Sbjct 72 IQWAQAAARSGIALDPKFSNSSAQTSSEYHGVVVTYAQVASHPTRHRVRTENYRTLVIFD 131 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAKTWGDA+REAF DATRRL+LTGTPFRSDDSPIPFV+Y PDA+G+LRS++DHT Sbjct 132 EIHHGGDAKTWGDAMREAFSDATRRLSLTGTPFRSDDSPIPFVNYVPDAEGLLRSESDHT 191 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYA+ALADGVVRPV+FLAYSG+ARWR SAGEE+ ARLGEPL+AEQTARAWRT LD GE Sbjct 192 YGYADALADGVVRPVIFLAYSGEARWRSSAGEEHAARLGEPLNAEQTARAWRTVLDANGE 251 Query 305 WMPAVITAADRRLRQLRA-HVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+ AAD RLRQLRA +PDAG MIIA+D+T AR YA LLT MT E PT+VLSDDPG Sbjct 252 WIPAVLKAADTRLRQLRAGGMPDAGAMIIATDQTAARQYAALLTKMTGEAPTLVLSDDPG 311 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SSARI E++ G + WLVAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSRRPG Sbjct 312 SSARIAEYSAGDTPWLVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRRPG 371 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFT 483 ETASIFVPSVP LL LAS +E QR+HVLG+PHRES D + ++E +RGF Sbjct 372 ETASIFVPSVPTLLDLASQMEAQRDHVLGKPHRESMGDE---ELVEHRRSEPTEEDRGFE 428 Query 484 ALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRA 543 +LGA AELDQVIFDG+SFGTATP GS+EEADYLGIPGLLDA+QMR LL RRQ+EQL +R Sbjct 429 SLGASAELDQVIFDGASFGTATPAGSEEEADYLGIPGLLDADQMRDLLRRRQEEQLTRRT 488 Query 544 QLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPI 603 G P T +GQLR+LR+EL+TLVS+AHHR KPHGWIH+E RR CGGPP+ Sbjct 489 --ASGEPPPVTP------YGQLRELRQELNTLVSLAHHRLNKPHGWIHNELRRICGGPPV 540 Query 604 AAATRAQIKARIDALRQLNS 623 AAAT Q++ARI A+R L + Sbjct 541 AAATSDQLQARIAAVRTLKA 560 >gi|333989066|ref|YP_004521680.1| hypothetical protein JDM601_0426 [Mycobacterium sp. JDM601] gi|333485034|gb|AEF34426.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=541 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/549 (76%), Positives = 465/549 (85%), Gaps = 9/549 (1%) Query 74 VQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAA 133 ++YL +PRDFL VATPG+GKT+FALRI AELL TVE++T+VVPT+HLKVQWA AAA Sbjct 1 MRYLTAKPRDFLMVATPGAGKTTFALRIVAELLADRTVERITIVVPTDHLKVQWATAAAE 60 Query 134 HGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAK 193 HG++LDP+F+NS+ QTS EYHGV+VTYAQVASHPT HRVRTEA KTLV+FDEIHHGGDAK Sbjct 61 HGIALDPRFSNSDAQTSSEYHGVVVTYAQVASHPTRHRVRTEAAKTLVIFDEIHHGGDAK 120 Query 194 TWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALAD 253 +WGD IREAF DATRRLALTGTPFRSDDSPIPFV+Y+PD G LRS AD +YGY EALAD Sbjct 121 SWGDGIREAFSDATRRLALTGTPFRSDDSPIPFVNYEPDGSGHLRSVADDSYGYPEALAD 180 Query 254 GVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAA 313 GVVRPVVF+AYSG+ARWRDSAGEEY ARLGEPL+AE TARAWRTALDP GEWMPAVI AA Sbjct 181 GVVRPVVFMAYSGEARWRDSAGEEYTARLGEPLTAEHTARAWRTALDPNGEWMPAVIAAA 240 Query 314 DRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQ 373 D RLRQ R HVPDAGGMIIASD+ ARAYA L+T +T E PTVVLSDD G+S +I +FA Sbjct 241 DTRLRQKRQHVPDAGGMIIASDQKAARAYAALVTRLTGEAPTVVLSDDAGASDKIAQFAT 300 Query 374 GTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGETASIFVPSV 433 TSRWLVAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSRRPGETASIF+PSV Sbjct 301 ATSRWLVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRRPGETASIFLPSV 360 Query 434 PNLLQLASALEVQRNHVLGRPHRESAHDPLDGDPATRTQTERGGAERGFTALGADAELDQ 493 P+LLQLAS LE QRNHVLG+PHRES D A R + E E F +LGADAELDQ Sbjct 361 PSLLQLASELEAQRNHVLGKPHRESERDEF--AEAQRRRDEPSELENTFESLGADAELDQ 418 Query 494 VIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKRAQLQKG-ATQP 552 VIFDG+SFGTATP GS+EEADYLGIPGLLDA+QMR LL RRQ+EQL +R+++ G A P Sbjct 419 VIFDGASFGTATPAGSEEEADYLGIPGLLDADQMRDLLRRRQEEQLDRRSKVAGGVAPVP 478 Query 553 ATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIK 612 T+ HGQLR LR EL+ LVS AHHR GKPHGWIH+E RR CGGPP+AAAT Q++ Sbjct 479 VTT------HGQLRALRHELNALVSAAHHRLGKPHGWIHNELRRICGGPPVAAATSDQLR 532 Query 613 ARIDALRQL 621 ARI+A+RQL Sbjct 533 ARIEAVRQL 541 >gi|169627748|ref|YP_001701397.1| hypothetical protein MAB_0645c [Mycobacterium abscessus ATCC 19977] gi|169239715|emb|CAM60743.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=564 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/573 (72%), Positives = 472/573 (83%), Gaps = 12/573 (2%) Query 54 LQPVSATFNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQ 113 ++ V A LRGWQRRALV+YL +PRDFLAVATPGSGKT FALRIA ELL TV++ Sbjct 1 MRAVEAPSTHTLRGWQRRALVRYLAAKPRDFLAVATPGSGKTRFALRIATELLADGTVDK 60 Query 114 VTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVR 173 +TVVVPTEHLKVQWA +A + GLSLDP+F+NS+ QTS EYHGV+VTYAQVASHPT HRVR Sbjct 61 ITVVVPTEHLKVQWAQSATSFGLSLDPRFSNSDSQTSSEYHGVVVTYAQVASHPTRHRVR 120 Query 174 TEARKTLVVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDA 233 TE +TLV+FDEIHH GDAK+WG+A+REAF DATRRL+LTGTPFRSDDSPIPF++Y+PD Sbjct 121 TENHRTLVIFDEIHHAGDAKSWGEAVREAFDDATRRLSLTGTPFRSDDSPIPFINYEPDG 180 Query 234 DGVLRSQADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTAR 293 G RSQADHTYGY+EALADGVVRPVVF+AYSG+ARWRDSAGEE+ ARLGEPLSAEQTAR Sbjct 181 AGYQRSQADHTYGYSEALADGVVRPVVFMAYSGEARWRDSAGEEHAARLGEPLSAEQTAR 240 Query 294 AWRTALDPEGEWMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARAYARLLTTMTAE 352 AWRT LDP GEW+PAV+ AA RL Q R + DAG MIIA+D+ ARAYA+LLT +T Sbjct 241 AWRTTLDPNGEWIPAVLRAAHARLLQKRKGGMTDAGAMIIATDQKAARAYAKLLTQITGS 300 Query 353 EPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQA 412 EPTVVLSDDP SS RI +F+ TS W+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQA Sbjct 301 EPTVVLSDDPKSSDRIAQFSASTSEWMVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQA 360 Query 413 IGRFVRSRRPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPL-DGDPATRT 471 IGR+VRSR PGETASIF+PSVP LL+LAS LE QRNHVLG+PHRE P+ D +P R Sbjct 361 IGRYVRSRTPGETASIFLPSVPTLLELASLLEEQRNHVLGKPHRE----PMGDEEPVERK 416 Query 472 QTERGGAERGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALL 531 +TE G E+GF +L A AELDQVIFDG+SFGTATP GS+EEA+YLGIPGLLD QMR LL Sbjct 417 RTEPGEEEKGFESLSASAELDQVIFDGASFGTATPAGSEEEAEYLGIPGLLDPNQMRDLL 476 Query 532 HRRQDEQLRKRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIH 591 RRQ+EQL KR G P + S HGQLR+LRREL+ LVS H ++GKPHGWIH Sbjct 477 RRRQEEQLTKRT--ASGEVPPEIT----STHGQLRELRRELNALVSATHFKSGKPHGWIH 530 Query 592 DERRRRCGGPPIAAATRAQIKARIDALRQLNSE 624 +E RRRCGGPP+AAATR Q+K RI+A+R L+ E Sbjct 531 NELRRRCGGPPVAAATRDQLKERIEAVRTLHRE 563 >gi|111023776|ref|YP_706748.1| RNA helicase [Rhodococcus jostii RHA1] gi|110823306|gb|ABG98590.1| probable RNA helicase [Rhodococcus jostii RHA1] Length=599 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/561 (71%), Positives = 460/561 (82%), Gaps = 7/561 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL T P+DFLAVATPG+GKT+FALR+A+ELLR TV+QVTVV PTEHLK Sbjct 40 LRAWQRRALTKYLSTGPQDFLAVATPGAGKTTFALRVASELLRDRTVDQVTVVAPTEHLK 99 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA +AA +G++LD F+NS QTS +Y GV+VTYAQVASHP HRVRTE+R+TLV+ D Sbjct 100 HQWAESAARNGIALDSYFSNSTGQTSSDYQGVVVTYAQVASHPFKHRVRTESRRTLVILD 159 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAFGDATRRLALTGTPFRSDDS IPFV+Y+PD +G++RS+ADH+ Sbjct 160 EIHHGGDAKSWGDAIREAFGDATRRLALTGTPFRSDDSAIPFVTYEPDREGLMRSKADHS 219 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPVVFLAYSG+ARWR++AGEE+ ARLGEPLSAEQTARAWRTALDP G+ Sbjct 220 YGYSDALADGVVRPVVFLAYSGEARWRNNAGEEFSARLGEPLSAEQTARAWRTALDPSGD 279 Query 305 WMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+ AAD RL QLR +PDAGG++IA+D+T ARAYA+ L +T E+P VVLSDDP Sbjct 280 WIPAVLHAADTRLGQLRTGGMPDAGGLVIATDQTVARAYAQTLKAVTGEDPVVVLSDDPT 339 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF T +W+VAVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQAIGRFVRSRR G Sbjct 340 ASKRIAEFGASTQKWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAIGRFVRSRRKG 399 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LAS LE QR+HVLG+PHRE D D D A + + E G E+ Sbjct 400 ETASVFLPSVPVLLDLASQLEAQRDHVLGKPHREK--DGFDDDLLADANKQKDELGEEEK 457 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 FT+LGADAELDQVI+DGSSFGTAT +GSDEEADYLG+PGLLDA+QMRALL +RQ EQL Sbjct 458 AFTSLGADAELDQVIYDGSSFGTATFSGSDEEADYLGLPGLLDADQMRALLRQRQSEQLD 517 Query 541 KRAQLQKGATQPATSGAS-ASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCG 599 K Q P A + GQL LRREL++LV++ HHRTGKPHG IH E RR CG Sbjct 518 KAEPAQAPVHTPVPQVADRVAAAGQLAQLRRELNSLVAMHHHRTGKPHGTIHGELRRVCG 577 Query 600 GPPIAAATRAQIKARIDALRQ 620 GPP A AT Q+ RI LRQ Sbjct 578 GPPTAIATVEQLTERISTLRQ 598 >gi|226366212|ref|YP_002783995.1| hypothetical protein ROP_68030 [Rhodococcus opacus B4] gi|226244702|dbj|BAH55050.1| hypothetical protein [Rhodococcus opacus B4] Length=597 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/560 (71%), Positives = 463/560 (83%), Gaps = 7/560 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL T P+DFLAVATPG+GKT+FALR+A+ELLR TV+QVTVV PTEHLK Sbjct 40 LRAWQRRALTKYLSTGPQDFLAVATPGAGKTTFALRVASELLRDRTVDQVTVVAPTEHLK 99 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA +AA +G++LD F+NS QTS +Y GV+VTYAQVASHP HRVRTE+R+TLV+ D Sbjct 100 HQWAESAARNGIALDSYFSNSTGQTSSDYQGVVVTYAQVASHPFKHRVRTESRRTLVILD 159 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAFGDATRRLALTGTPFRSDDS IPFV+Y+PD +G++RS+ADH+ Sbjct 160 EIHHGGDAKSWGDAIREAFGDATRRLALTGTPFRSDDSAIPFVTYEPDREGLMRSKADHS 219 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPVVFLAYSG+ARWR++AGEE+ ARLGEPLSAEQTARAWRTALDP G+ Sbjct 220 YGYSDALADGVVRPVVFLAYSGEARWRNNAGEEFSARLGEPLSAEQTARAWRTALDPSGD 279 Query 305 WMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+ AAD RL QLR +PDAGG++IA+D+T ARAYA+ L +T E+P VVLSDDP Sbjct 280 WIPAVLHAADTRLGQLRTGGMPDAGGLVIATDQTVARAYAQTLKAVTGEDPVVVLSDDPT 339 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF T +W+VAVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQAIGRFVRSRR G Sbjct 340 ASKRIAEFGASTQKWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAIGRFVRSRRKG 399 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LAS LE QR+HVLG+PHRE D D D A + + E G E+ Sbjct 400 ETASVFLPSVPVLLDLASQLEAQRDHVLGKPHREK--DGFDDDLLADANKQKDEPGEEEK 457 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 FT+LGADAELDQVI+DGSSFGTAT +GSDEEADYLG+PGLLDA+QMRALL +RQ EQL Sbjct 458 AFTSLGADAELDQVIYDGSSFGTATFSGSDEEADYLGLPGLLDADQMRALLRQRQTEQLD 517 Query 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 K+A A P + A+ GQL LRREL++LV++ +HRTGKPHG IH E RR CGG Sbjct 518 KQAPPAPAAPVPQVAERVAAA-GQLAQLRRELNSLVAMHNHRTGKPHGTIHGELRRVCGG 576 Query 601 PPIAAATRAQIKARIDALRQ 620 PP A AT Q+ RI LRQ Sbjct 577 PPTAIATVEQLTERISTLRQ 596 >gi|312139429|ref|YP_004006765.1| restriction endonuclease [Rhodococcus equi 103S] gi|325672682|ref|ZP_08152378.1| type III restriction enzyme, res subunit [Rhodococcus equi ATCC 33707] gi|311888768|emb|CBH48080.1| putative restriction endonuclease [Rhodococcus equi 103S] gi|325556559|gb|EGD26225.1| type III restriction enzyme, res subunit [Rhodococcus equi ATCC 33707] Length=578 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/562 (70%), Positives = 460/562 (82%), Gaps = 8/562 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL T+PRDFLAVATPG+GKT+FALR+AAELLR TV+Q+TVV PTEHLK Sbjct 18 LRAWQRRALTKYLATKPRDFLAVATPGAGKTTFALRVAAELLRDRTVDQITVVAPTEHLK 77 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA +AA +G++LD F+NS QTS +YHGV+VTYAQVASHP H RT AR+TLV+ D Sbjct 78 HQWAESAARNGIALDSNFSNSTGQTSADYHGVVVTYAQVASHPFKHHARTAARRTLVILD 137 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREA+GDATRRLALTGTPFRSDDSPIPFV+Y+PD +G RS+ADHT Sbjct 138 EIHHGGDAKSWGDAIREAYGDATRRLALTGTPFRSDDSPIPFVTYEPDNEGHQRSKADHT 197 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPVVFLAYSG+ARWR+SAGEE+ ARLGEPL+AEQTARAWRTALDP G+ Sbjct 198 YGYSDALADGVVRPVVFLAYSGEARWRNSAGEEFAARLGEPLNAEQTARAWRTALDPAGD 257 Query 305 WMPAVITAADRRLRQLRA-HVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+P+V+ AA+ RL QLRA +PDAGG++IA+D+T ARAYA+ L +T E P ++LSDDP Sbjct 258 WIPSVLAAANTRLGQLRAGGMPDAGGLVIATDQTVARAYAKQLEAITGEAPALILSDDPT 317 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF++ T W+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSR G Sbjct 318 ASKRIAEFSKSTQPWMVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRVKG 377 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LAS LE QR+H+LG+PHRE D LD + A + + E G E+ Sbjct 378 ETASVFLPSVPVLLDLASQLEAQRDHILGKPHREK--DGLDDELIADANKQKDEPGEEEK 435 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 FT+LGADAELDQVI+DGSSFGTAT +GSDEEADYLG+PGLLDAEQMRALL +RQ Q+ Sbjct 436 AFTSLGADAELDQVIYDGSSFGTATFSGSDEEADYLGLPGLLDAEQMRALLRQRQQSQID 495 Query 541 KRAQLQKGATQPATSGASASV--HGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRC 598 K A + P + V GQL +LRREL++LV++ HHRTGKPHG IH E RR C Sbjct 496 KPAAAAEAPVPPPVPQVAERVASAGQLANLRRELNSLVAMHHHRTGKPHGIIHGELRRAC 555 Query 599 GGPPIAAATRAQIKARIDALRQ 620 GGPP A AT Q+ RI LRQ Sbjct 556 GGPPTAIATVEQLTDRIATLRQ 577 >gi|229491304|ref|ZP_04385130.1| type III restriction enzyme, res subunit [Rhodococcus erythropolis SK121] gi|229321843|gb|EEN87638.1| type III restriction enzyme, res subunit [Rhodococcus erythropolis SK121] Length=592 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/561 (69%), Positives = 456/561 (82%), Gaps = 9/561 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL + PRDFLAVATPG+GKT+FALR+A+ELLR TV+Q+TVV PTEHLK Sbjct 33 LRAWQRRALTKYLSSSPRDFLAVATPGAGKTTFALRVASELLRDRTVDQITVVAPTEHLK 92 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA +A GL+LD +F+NS QTS +YHGV++TYAQVASHP+ HRVRTE RKTLV+ D Sbjct 93 HQWAESAQRSGLALDSRFSNSTGQTSSDYHGVVLTYAQVASHPSKHRVRTEGRKTLVILD 152 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAFGDATRRLALTGTPFRSDDS IPFV Y+PD +G+LRS+ADH+ Sbjct 153 EIHHGGDAKSWGDAIREAFGDATRRLALTGTPFRSDDSAIPFVEYEPDKEGLLRSKADHS 212 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++AL DGVVRPVVFLAYSG+ARWR++AGEE+ ARLGEPLSAEQT RAWRTALDP G+ Sbjct 213 YGYSDALKDGVVRPVVFLAYSGEARWRNNAGEEFTARLGEPLSAEQTTRAWRTALDPAGD 272 Query 305 WMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+ AAD RL QLR+ +PDAGG++IA+D+T AR YA+ LT +T E+P VVLSDDP Sbjct 273 WIPAVLQAADTRLAQLRSTGMPDAGGLVIATDQTVAREYAKALTAITGEQPAVVLSDDPT 332 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF +W+VAVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQAIGRFVRSRR G Sbjct 333 ASKRIAEFGASDQKWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAIGRFVRSRRKG 392 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LA+ LE QR+HVLG+PHRE D L+ D A + + E G E+ Sbjct 393 ETASVFLPSVPVLLDLAAQLEAQRDHVLGKPHRE--KDGLEDDLLADANKQKDELGEEEK 450 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 FT+LGADAELDQVI+DGSSFGTAT GSDEEADYLG+PGLLDA+QMRALL +RQ Q+ Sbjct 451 AFTSLGADAELDQVIYDGSSFGTATFAGSDEEADYLGLPGLLDADQMRALLRQRQQTQVE 510 Query 541 KRAQLQKGATQPATSGAS--ASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRC 598 + + A QP + S A+ QL LR+EL+ LV++ HRTGKPHG IH E RR C Sbjct 511 ANSA-KAAAPQPTAAVVSDRAATADQLGALRKELNGLVAMNVHRTGKPHGIIHAELRRVC 569 Query 599 GGPPIAAATRAQIKARIDALR 619 GGPP A AT Q+ RI LR Sbjct 570 GGPPTAIATVDQLTERIAILR 590 >gi|226306297|ref|YP_002766257.1| hypothetical protein RER_28100 [Rhodococcus erythropolis PR4] gi|226185414|dbj|BAH33518.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=592 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/561 (69%), Positives = 456/561 (82%), Gaps = 9/561 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL + PRDFLAVATPG+GKT+FALR+A+ELLR TV+Q+TVV PTEHLK Sbjct 33 LRAWQRRALTKYLSSSPRDFLAVATPGAGKTTFALRVASELLRDRTVDQITVVAPTEHLK 92 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA +A GL+LD +F+NS QTS +YHGV++TYAQVASHP+ HRVRTE RKTLV+ D Sbjct 93 HQWAESAQRSGLALDSRFSNSTGQTSSDYHGVVLTYAQVASHPSKHRVRTEGRKTLVILD 152 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAFGDATRRLALTGTPFRSDDS IPFV Y+PD +G+LRS+ADH+ Sbjct 153 EIHHGGDAKSWGDAIREAFGDATRRLALTGTPFRSDDSAIPFVEYEPDKEGLLRSKADHS 212 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++AL DGVVRPVVFLAYSG+ARWR++AGEE+ ARLGEPLSAEQT RAWRTALDP G+ Sbjct 213 YGYSDALKDGVVRPVVFLAYSGEARWRNNAGEEFTARLGEPLSAEQTTRAWRTALDPAGD 272 Query 305 WMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+ AAD RL QLR+ +PDAGG++IA+D+T AR YA+ LT +T E+P VVLSDDP Sbjct 273 WIPAVLQAADTRLAQLRSTGMPDAGGLVIATDQTVAREYAKALTAITGEQPAVVLSDDPT 332 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF +W+VAVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQAIGRFVRSRR G Sbjct 333 ASKRIAEFGASDQKWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAIGRFVRSRRKG 392 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LA+ LE QR+HVLG+PHRE D L+ D A + + E G E+ Sbjct 393 ETASVFLPSVPVLLDLAAQLEAQRDHVLGKPHRE--KDGLEDDLLADANKQKDELGEEEK 450 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 FT+LGADAELDQVI+DGSSFGTAT GSDEEADYLG+PGLLDA+QMRALL +RQ Q+ Sbjct 451 AFTSLGADAELDQVIYDGSSFGTATFAGSDEEADYLGLPGLLDADQMRALLRQRQQTQVE 510 Query 541 KRAQLQKGATQPATSGAS--ASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRC 598 + + A QP + S A+ QL LR+EL+ LV++ HRTGKPHG IH E RR C Sbjct 511 ANSA-KAAAPQPTAAVVSDRAATADQLGALRKELNGLVAMNVHRTGKPHGIIHAELRRVC 569 Query 599 GGPPIAAATRAQIKARIDALR 619 GGPP A AT Q+ RI LR Sbjct 570 GGPPTAIATVDQLTERIAILR 590 >gi|262202175|ref|YP_003273383.1| type III restriction protein res subunit [Gordonia bronchialis DSM 43247] gi|262085522|gb|ACY21490.1| type III restriction protein res subunit [Gordonia bronchialis DSM 43247] Length=595 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/574 (69%), Positives = 465/574 (82%), Gaps = 10/574 (1%) Query 55 QPVSA--TFNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVE 112 +PV+A + PPLR WQRRAL +YL +PRDFLAVATPG+GKT+F LRIA ELL TV+ Sbjct 22 EPVTARVSSGPPLRAWQRRALTKYLTRRPRDFLAVATPGAGKTTFGLRIARELLDDRTVD 81 Query 113 QVTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRV 172 Q+TVV PTEHLK QWA AAA G++LD +F+NS QTS ++ GV VTYAQVA+HP HRV Sbjct 82 QITVVAPTEHLKHQWAQAAARVGIALDSRFSNSAGQTSSDFDGVAVTYAQVAAHPARHRV 141 Query 173 RTEARKTLVVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPD 232 RTE R+TLV+ DEIHHGGDAK+WG+AIREAF DATRRLALTGTPFRSDDSPIPFV+Y+P+ Sbjct 142 RTENRRTLVILDEIHHGGDAKSWGEAIREAFSDATRRLALTGTPFRSDDSPIPFVTYEPE 201 Query 233 ADGVLRSQADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTA 292 GV RS+ADHTYGYA+ALADGVVRPVVFLAYSGQA WR SAGEE+ ARLGEPLSAE TA Sbjct 202 PGGVQRSRADHTYGYADALADGVVRPVVFLAYSGQASWRTSAGEEFTARLGEPLSAEHTA 261 Query 293 RAWRTALDPEGEWMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTA 351 RAWRTALDP G+W+PAV+TAA RL QLRA VPDAGG++IA+D+TTAR YA LL ++T Sbjct 262 RAWRTALDPHGDWIPAVLTAAHTRLGQLRASGVPDAGGLVIATDQTTARDYAELLASITG 321 Query 352 EEPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQ 411 + PT+VLSDDP SS+RI EFA W+VAVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQ Sbjct 322 KAPTIVLSDDPKSSSRIAEFATSDDEWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQ 381 Query 412 AIGRFVRSRRPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDG---DPA 468 AIGRFVRSRRPGETAS+F+PSVP LL LAS +E +R+HVLG+PHRES D LD + A Sbjct 382 AIGRFVRSRRPGETASVFLPSVPVLLDLASQMEAERDHVLGKPHRES--DGLDDALLEDA 439 Query 469 TRTQTERGGAERGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMR 528 + + E G E+GF +L ADAELDQVIFDGSSFGTAT G++EE+DYLG+PGLLDA+Q+R Sbjct 440 NKQKDEPGEDEKGFQSLHADAELDQVIFDGSSFGTATFAGTEEESDYLGLPGLLDADQVR 499 Query 529 ALLHRRQDEQLRKRAQLQKGATQPATSGASA--SVHGQLRDLRRELHTLVSIAHHRTGKP 586 ALL RRQD+Q+ R G A +GA S L LR+EL++LV++ HHRTGKP Sbjct 500 ALLRRRQDDQVAARTTAAAGNKSDAGAGAQTPRSTGENLHALRKELNSLVAMHHHRTGKP 559 Query 587 HGWIHDERRRRCGGPPIAAATRAQIKARIDALRQ 620 HG +H+E R R GGPP A A+ Q++ RI+ALR+ Sbjct 560 HGMVHNELRTRLGGPPTAMASADQLRERINALRE 593 >gi|333919430|ref|YP_004493011.1| putative RNA helicase [Amycolicicoccus subflavus DQS3-9A1] gi|333481651|gb|AEF40211.1| putative RNA helicase [Amycolicicoccus subflavus DQS3-9A1] Length=579 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/563 (69%), Positives = 450/563 (80%), Gaps = 8/563 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL T+PRDFLAVATPG+GKT+FALR+AAELL TV+Q+T+V PTEHLK Sbjct 17 LRAWQRRALTKYLATKPRDFLAVATPGAGKTTFALRVAAELLEDRTVDQITIVAPTEHLK 76 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA AA G+S+D +F+NS QTS +YHGV VTYAQVASHP HRVRTE RKTLV+ D Sbjct 77 HQWADAAHRLGISIDSRFSNSTGQTSRDYHGVAVTYAQVASHPFKHRVRTENRKTLVILD 136 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHH GDAK+WG+A+ EAF DATRRLALTGTPFRSDDSPIPFV+Y+P+ G+ RS+ADHT Sbjct 137 EIHHAGDAKSWGEAMHEAFSDATRRLALTGTPFRSDDSPIPFVTYEPEGGGLSRSKADHT 196 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++AL DGVVRPVVFLAYSG+ARWR++AGEE+ ARLGEPL+AEQTARAWRTALDP G+ Sbjct 197 YGYSDALGDGVVRPVVFLAYSGEARWRNNAGEEFAARLGEPLNAEQTARAWRTALDPNGD 256 Query 305 WMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+P+V++AA RL QLRA + DAGG++IASD+T ARAYA+ L +T E+P +VLSDDP Sbjct 257 WIPSVLSAAHTRLGQLRARGMADAGGLVIASDQTMARAYAQALEEITGEKPVLVLSDDPA 316 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SS RI EF W+VAVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQAIGRFVR R PG Sbjct 317 SSGRIAEFNASGDMWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAIGRFVRLRTPG 376 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHR--ESAHDPLDGDPATRTQTERGGAERG 481 ETAS+F+PSVP LL LAS LE QR+HVLG+PHR E D L A + + E G E+ Sbjct 377 ETASVFLPSVPVLLDLASKLEAQRDHVLGKPHRDKEGFDDELLAQ-ANQQKDEPGEDEKA 435 Query 482 FTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRK 541 FT+LGA AELDQVI+DGSSFGTAT GSDEEADYLG+PGLLDA+QMRALL +RQ Q++K Sbjct 436 FTSLGAQAELDQVIYDGSSFGTATFAGSDEEADYLGLPGLLDADQMRALLQQRQSGQIKK 495 Query 542 RAQLQKGATQPATSGA----SASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRR 597 RAQ +P +G S S QL LRREL+TLV++ HHRTGK HG IH E RR Sbjct 496 RAQETAPVREPDAAGPVPERSESTAEQLAHLRRELNTLVALHHHRTGKTHGTIHGELRRT 555 Query 598 CGGPPIAAATRAQIKARIDALRQ 620 CGGPP A AT QI+ RI LR Sbjct 556 CGGPPTAMATAEQIRDRIALLRN 578 >gi|257056429|ref|YP_003134261.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256586301|gb|ACU97434.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length=592 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/586 (66%), Positives = 456/586 (78%), Gaps = 9/586 (1%) Query 43 NSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIA 102 VR G +P PLR WQRRAL +YL +P+DFLAVATPG+GKT F LR+A Sbjct 5 TKVRDGGATSAPEPAHDATARPLRAWQRRALTKYLTRKPKDFLAVATPGAGKTVFGLRVA 64 Query 103 AELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQ 162 AELL TVE VT+V PTEHLK QWA +A G+++D F NS+ TSP+Y GV VTYAQ Sbjct 65 AELLSDRTVEAVTIVTPTEHLKHQWAESAERAGIAIDSNFRNSDGVTSPDYQGVAVTYAQ 124 Query 163 VASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDS 222 VA+HP+LHRVRTE RKTLV+ DEIHH GD+K+WGDAI EAF A RRLALTGTPFRSDDS Sbjct 125 VAAHPSLHRVRTENRKTLVILDEIHHAGDSKSWGDAIYEAFTPAVRRLALTGTPFRSDDS 184 Query 223 PIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARL 282 PIPFV+Y+PDADG LRS+ DH+Y YA+ALADGVVRPVVFLAYSG+A WR SAG+E+ ARL Sbjct 185 PIPFVTYEPDADGALRSKPDHSYNYADALADGVVRPVVFLAYSGEASWRTSAGDEFTARL 244 Query 283 GEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARA 341 GEPL+AEQ ARAWRTALDP GEW+PAV AAD RL QLR + +PDAGG++IA+D+ +ARA Sbjct 245 GEPLTAEQNARAWRTALDPSGEWIPAVFEAADTRLTQLRTSGMPDAGGLVIATDQESARA 304 Query 342 YARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYAT 401 YA++L + E+P VVLSDDP ++ RI EF++ RWLVAVRMVSEGVDVPRL+VGVYAT Sbjct 305 YAKILARIAGEQPVVVLSDDPRATKRIAEFSESEQRWLVAVRMVSEGVDVPRLAVGVYAT 364 Query 402 NASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRE-SAH 460 +ASTPLFFAQAIGRFVRSRRPGETAS+F+PSVP LL+LAS LE +R+HVLG+PHRE S Sbjct 365 SASTPLFFAQAIGRFVRSRRPGETASVFLPSVPVLLELASELEAERDHVLGKPHREKSGW 424 Query 461 DPLDGDPATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPG 520 D A RT ERG E+ FT+LGA AELDQVI+DG+SFGT GS+EE +YLG+PG Sbjct 425 DDELIVAANRTDNERGEEEKSFTSLGASAELDQVIYDGNSFGTPVLAGSEEEQEYLGLPG 484 Query 521 LLDAEQMRALLHRRQDEQL----RKRAQLQKGATQ---PATSGASASVHGQLRDLRRELH 573 LLDA+Q+R LL +RQ+EQL R +A+ +G PA + ASV+ +L+ LR+EL+ Sbjct 485 LLDADQVRMLLRKRQEEQLAKAKRNKAKETEGTKAEKPPAPTPRPASVNERLKALRKELN 544 Query 574 TLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALR 619 TLV + HHRT KPHG IH+E RR CGGPP A AT Q++ RI LR Sbjct 545 TLVGLYHHRTRKPHGVIHNELRRICGGPPTAMATVEQLEERIATLR 590 >gi|54025739|ref|YP_119981.1| hypothetical protein nfa37690 [Nocardia farcinica IFM 10152] gi|54017247|dbj|BAD58617.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=577 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/565 (68%), Positives = 450/565 (80%), Gaps = 14/565 (2%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL T+PRDFLAVATPG+GKT+FALR+AAELL TV+Q+TVV PTEHLK Sbjct 17 LRAWQRRALTKYLATKPRDFLAVATPGAGKTTFALRVAAELLADRTVDQITVVAPTEHLK 76 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA +AA G+ LD +F+NS TS +YHGV+VTYAQVA+HPT HRVRTE R+TLV+ D Sbjct 77 HQWAASAARSGIQLDSRFSNSTGGTSGDYHGVVVTYAQVAAHPTRHRVRTENRRTLVILD 136 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHH GDAK+WGDA+ EAFGDATRRLALTGTPFRSDDS IPFV+Y+PD G +S+ADHT Sbjct 137 EIHHAGDAKSWGDAVAEAFGDATRRLALTGTPFRSDDSQIPFVTYEPDESGFPKSRADHT 196 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYAEALADGVVRPVVFLAYSG A WRDSAGEE+ ARLGEPLS EQTARAWRTALDP G+ Sbjct 197 YGYAEALADGVVRPVVFLAYSGDAHWRDSAGEEHSARLGEPLSPEQTARAWRTALDPAGD 256 Query 305 WMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+ AV+ AAD RLRQ R + +PDAGG++IA+D+ AR YA LL ++ +P +VLSDDP Sbjct 257 WISAVLRAADIRLRQKRESGMPDAGGLVIATDQERARDYAELLEHISGRKPALVLSDDPT 316 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SS RI EF+ T W+VAVRMVSEGVDVPRL+VGVYAT+A+TPL+FAQAIGRFVR+RRPG Sbjct 317 SSKRIAEFSANTEPWMVAVRMVSEGVDVPRLAVGVYATSAATPLYFAQAIGRFVRARRPG 376 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LA+ LEVQR+HV+G+PHRE LD D A + + E G ER Sbjct 377 ETASVFLPSVPVLLDLAAQLEVQRDHVIGKPHREKTG--LDDDLLTDAAKQKDEPGEEER 434 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 F AL ADAELDQVI+DGSSFGTAT GSDEEADYLGIPGLLDAEQMRALL RQ Q+ Sbjct 435 KFVALAADAELDQVIYDGSSFGTATFAGSDEEADYLGIPGLLDAEQMRALLRERQSRQVA 494 Query 541 KRAQLQKGATQPA-----TSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERR 595 +R+ A +PA + + +L +LRREL++LV++ HHRTGKPHG IH E R Sbjct 495 ERS---AKAPEPAGPKVAAAAERVATADRLGELRRELNSLVAMHHHRTGKPHGVIHGELR 551 Query 596 RRCGGPPIAAATRAQIKARIDALRQ 620 R CGGPP A AT Q+ RI ALR+ Sbjct 552 RECGGPPTALATAEQLHERIAALRR 576 >gi|343924628|ref|ZP_08764172.1| hypothetical protein GOALK_021_00060 [Gordonia alkanivorans NBRC 16433] gi|343765428|dbj|GAA11098.1| hypothetical protein GOALK_021_00060 [Gordonia alkanivorans NBRC 16433] Length=585 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/561 (68%), Positives = 449/561 (81%), Gaps = 8/561 (1%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL +P+DFLAVATPG+GKT+F LR+A ELL TVEQ+TVV PTEHLK Sbjct 24 LRAWQRRALTKYLTRRPKDFLAVATPGAGKTTFGLRVARELLDDRTVEQITVVAPTEHLK 83 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA AAA G++LD F+NS QTS +Y+GV++TYAQVA+HPT HRVRTE R+TLV+ D Sbjct 84 HQWAEAAARVGIALDSHFSNSAGQTSSDYNGVVLTYAQVAAHPTKHRVRTENRRTLVILD 143 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGDAIREAF DA RRL LTGTPFRSDDSPIPFV Y+ +A G RS+ADHT Sbjct 144 EIHHGGDAKSWGDAIREAFDDAERRLLLTGTPFRSDDSPIPFVVYEAEAGGHQRSKADHT 203 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGYA+AL DGVVRPVVFLAYSG+A WR SAGEE+ ARLGEPLSAE TARAWRTALDP G+ Sbjct 204 YGYADALKDGVVRPVVFLAYSGEASWRTSAGEEFTARLGEPLSAEHTARAWRTALDPHGD 263 Query 305 WMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 W+PAV+TAA RL QLRA +PDAGG++IA+D++TAR YA LLT +T ++PT+VLSDDP Sbjct 264 WIPAVLTAAHTRLGQLRASGMPDAGGLVIATDQSTARDYAELLTAITGKQPTLVLSDDPK 323 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 SS+RI EF+ W++AVRMVSEGVDVPRL+VGVYAT++STPLFFAQAIGRFVRSRRPG Sbjct 324 SSSRIAEFSASKDEWMIAVRMVSEGVDVPRLAVGVYATSSSTPLFFAQAIGRFVRSRRPG 383 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAER 480 ETAS+F+PSVP LL LAS +E QR+HVLG+PHRES D LD A + + E G E Sbjct 384 ETASVFLPSVPVLLDLASQMEAQRDHVLGKPHRES--DGLDDQLLIDANKQKDEPGEDEP 441 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 F +L ADAELDQVIFDG+SFGTAT GSDEE+DYLG+PGLLDA+Q+RALL +RQ EQ+ Sbjct 442 AFQSLHADAELDQVIFDGASFGTATFAGSDEESDYLGLPGLLDADQVRALLQKRQAEQVV 501 Query 541 KRAQ--LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRC 598 R+ + + P A + L LR+EL+TLV++ HHRTGKPHG +H+E R R Sbjct 502 ARSTPAAEPKSETPDPGRAPGTTGENLHALRKELNTLVAMHHHRTGKPHGMVHNELRTRL 561 Query 599 GGPPIAAATRAQIKARIDALR 619 GGPP A AT Q+K RI ALR Sbjct 562 GGPPTAMATAEQLKERIAALR 582 >gi|302525721|ref|ZP_07278063.1| type III restriction enzyme [Streptomyces sp. AA4] gi|302434616|gb|EFL06432.1| type III restriction enzyme [Streptomyces sp. AA4] Length=601 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/559 (67%), Positives = 445/559 (80%), Gaps = 4/559 (0%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRAL +YL ++P+DFLAVATPG+GKT F LRIAAELL TVE VT+V PTEHL Sbjct 42 PLRAWQRRALTKYLSSKPKDFLAVATPGAGKTVFGLRIAAELLSDRTVEAVTIVTPTEHL 101 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA +AAA G+ +D F N+ TS +Y GV VTYAQVA+HPTLHRVRTE RKTLV+ Sbjct 102 KHQWAASAAAAGIPIDSNFRNTTGVTSSDYRGVAVTYAQVAAHPTLHRVRTENRKTLVIL 161 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHH GDAK+WGDA EAF A RRLALTGTPFRSDDSPIPFV+Y+PDA G RS+ADH Sbjct 162 DEIHHAGDAKSWGDATSEAFTPAVRRLALTGTPFRSDDSPIPFVTYEPDAGGFQRSKADH 221 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 +YGY++ALADGVVRPVVFLAYSG+A WR SAGEE+ ARLGEPL+AEQ ARAWRTALDP G Sbjct 222 SYGYSDALADGVVRPVVFLAYSGEASWRTSAGEEFTARLGEPLTAEQNARAWRTALDPAG 281 Query 304 EWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 EW+PAV+ AAD RL Q+R +PDAGG++IA+D+ TARAYA++L + E PT+VLSDDP Sbjct 282 EWIPAVLQAADTRLSQVRQGIPDAGGLVIATDQETARAYAKILERICGETPTLVLSDDPK 341 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF++ T RW+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGR+VR+R+ G Sbjct 342 ASGRIKEFSETTERWIVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRYVRARKKG 401 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESA--HDPLDGDPATRTQTERGGAERG 481 ETASIF+PSVP LL+LAS LE QR+HVLG+PHRE D L A RT+ E G E+ Sbjct 402 ETASIFLPSVPVLLELASELEAQRDHVLGKPHREKEGWDDELLAQ-ANRTEDEPGEEEKA 460 Query 482 FTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRK 541 FT+L A AELDQVI+DG+SFGTA +GSDEE +YLG+PGLL+ +Q+RALL +RQ+EQ+ Sbjct 461 FTSLHASAELDQVIYDGNSFGTAVFSGSDEEQEYLGLPGLLEPDQVRALLRKRQEEQISD 520 Query 542 RAQLQ-KGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 + + K Q A + SV +L LR+EL+ LV + HHRT KPHG IH+E RR+CGG Sbjct 521 EKRRKPKAEEQAAPAPRPQSVTERLGALRKELNALVGVYHHRTKKPHGAIHNELRRQCGG 580 Query 601 PPIAAATRAQIKARIDALR 619 PP A AT Q++ RI LR Sbjct 581 PPTAMATVEQLEERIVTLR 599 >gi|296139553|ref|YP_003646796.1| type III restriction protein res subunit [Tsukamurella paurometabola DSM 20162] gi|296027687|gb|ADG78457.1| type III restriction protein res subunit [Tsukamurella paurometabola DSM 20162] Length=563 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/558 (67%), Positives = 440/558 (79%), Gaps = 5/558 (0%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQRRAL +YL +P+DFLAVATPG+GKT+FALR+AAELL TVE+VTVV PTEHLK Sbjct 5 LRVWQRRALTKYLTAKPQDFLAVATPGAGKTTFALRVAAELLADRTVERVTVVAPTEHLK 64 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 QWA AAA +G++LDP F NS TS ++ GV++TYAQV HP H RT A KTLV+ D Sbjct 65 YQWAEAAARNGINLDPNFTNSGGSTSSDFDGVVITYAQVGMHPYKHHARTTAYKTLVILD 124 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHH GDAK+WG+ +REAF ATRRLALTGTPFRSDD+PIPFV+Y+P+ G RS+ADH Sbjct 125 EIHHAGDAKSWGEGVREAFEGATRRLALTGTPFRSDDNPIPFVTYEPEFGGGQRSKADHV 184 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPVVFLAYSGQA WR SAGEE+ ARLGEPLS EQTARAWRTALDP G+ Sbjct 185 YGYSDALADGVVRPVVFLAYSGQASWRTSAGEEFTARLGEPLSKEQTARAWRTALDPHGD 244 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 W+PAV+ AA+ RL QLR +PDAGG++IA+D++TAR YA LL +T E+ TVVLSDDP + Sbjct 245 WIPAVLHAANTRLDQLRRTMPDAGGLVIATDQSTARDYAELLHDITGEKVTVVLSDDPTA 304 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 S RI+EF+ +W+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSR GE Sbjct 305 SKRISEFSSSRDKWMVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRAQGE 364 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAERG 481 TAS+F+PSVP LL LAS LE QR+HVLG+PHRES D LD A + + E G E+ Sbjct 365 TASVFLPSVPVLLDLASKLEEQRDHVLGKPHRES--DGLDDALLIDANKQKDEPGEEEKA 422 Query 482 FTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRK 541 F +L ADAELDQ+I+DGSS+GTAT GSDEEADYLG+PGLLDAEQMRALL +RQ EQ++ Sbjct 423 FVSLHADAELDQLIYDGSSYGTATFAGSDEEADYLGLPGLLDAEQMRALLKQRQKEQVQT 482 Query 542 RAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGGP 601 R + P A+ QL LRREL++LV++ HHRTGKPHG +H+E R R GGP Sbjct 483 RTVEAERPAPPVEVEQRATAGEQLSALRRELNSLVAMHHHRTGKPHGVVHNELRSRLGGP 542 Query 602 PIAAATRAQIKARIDALR 619 A A+ Q++ RI ALR Sbjct 543 VTAMASAEQLRERIAALR 560 >gi|300784487|ref|YP_003764778.1| type III restriction enzyme, res subunit [Amycolatopsis mediterranei U32] gi|299794001|gb|ADJ44376.1| type III restriction enzyme, res subunit [Amycolatopsis mediterranei U32] gi|340525908|gb|AEK41113.1| type III restriction enzyme, res subunit [Amycolatopsis mediterranei S699] Length=578 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/560 (67%), Positives = 448/560 (80%), Gaps = 6/560 (1%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRAL +YL +P+DFLAVATPG+GKT F LRIAAELL T+E VT+V PTEHL Sbjct 19 PLRAWQRRALTKYLTRKPKDFLAVATPGAGKTVFGLRIAAELLSDRTIEAVTIVTPTEHL 78 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA +AAA G+++D F N+ TS +Y+GV +TYAQVA+HPTLHRVRTE RKTLV+ Sbjct 79 KHQWAASAAAAGIAIDSNFRNTTGVTSSDYNGVALTYAQVAAHPTLHRVRTENRKTLVIL 138 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHHGGDAK+WGDAIREAF A RRL+LTGTPFRSDDS IPFV+Y+PDA G RS+ADH Sbjct 139 DEIHHGGDAKSWGDAIREAFTPAVRRLSLTGTPFRSDDSAIPFVTYEPDAGGFQRSKADH 198 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 +YGYA+ALADGVVRPVVFLAYSG+A WR SAGEE+ ARLGEPL+AEQ ARAWRTALDP G Sbjct 199 SYGYADALADGVVRPVVFLAYSGEASWRTSAGEEFTARLGEPLTAEQNARAWRTALDPAG 258 Query 304 EWMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPG 363 EW+PAV+ AAD RL Q+R VPDAGG++IA+D+ +ARAYA++L ++ E PT+VLSDDP Sbjct 259 EWIPAVLQAADTRLSQVRQSVPDAGGLVIATDQESARAYAKILERLSGEMPTLVLSDDPK 318 Query 364 SSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPG 423 +S RI EF++ RW+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGR+VR+R+ G Sbjct 319 ASGRIKEFSETNERWIVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRYVRARKKG 378 Query 424 ETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESA--HDPLDGDPATRTQTERGGAERG 481 ETAS+F+PSVP LL+LAS LE QR+HVLG+PHRE D L A RT+ E G E+ Sbjct 379 ETASVFLPSVPVLLELASELEAQRDHVLGKPHREKEGWEDELLAQ-ANRTEDEPGEEEKA 437 Query 482 FTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQL-- 539 FT+LGA AELDQVI+DG+SFGTA +GSDEE +YLG+PGLL+ +Q+RALL +RQ+EQ+ Sbjct 438 FTSLGASAELDQVIYDGNSFGTAVFSGSDEEQEYLGLPGLLEPDQVRALLRKRQEEQIAD 497 Query 540 RKRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCG 599 KR + K P T+ SV +L LR+EL+ LV + HHRT KPHG IH+E RR CG Sbjct 498 EKRRKPAKEEAPPPTARPQ-SVSERLGALRKELNALVGMYHHRTKKPHGAIHNELRRVCG 556 Query 600 GPPIAAATRAQIKARIDALR 619 GP A AT Q++ RI LR Sbjct 557 GPVTAMATVEQLEERIVTLR 576 >gi|134098375|ref|YP_001104036.1| type III restriction enzyme, res subunit [Saccharopolyspora erythraea NRRL 2338] gi|291006923|ref|ZP_06564896.1| type III restriction enzyme, res subunit [Saccharopolyspora erythraea NRRL 2338] gi|133910998|emb|CAM01111.1| type III restriction enzyme, res subunit [Saccharopolyspora erythraea NRRL 2338] Length=591 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/588 (65%), Positives = 457/588 (78%), Gaps = 19/588 (3%) Query 44 SVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAA 103 SVRS VL S + PLR WQRRAL +YL +P+DFLAVATPG+GKT+F LRIA+ Sbjct 9 SVRS-----VLSDPSQAPSRPLRAWQRRALTRYLSGKPQDFLAVATPGAGKTTFGLRIAS 63 Query 104 ELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQV 163 ELL TV+ VTVV PTEHLK QWA AA G++LD F N + TS +Y GV++TYAQV Sbjct 64 ELLADRTVDSVTVVAPTEHLKHQWALAAGGAGIALDSNFRNGDGVTSSDYQGVVLTYAQV 123 Query 164 ASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSP 223 A+HPTLHRVRTE RKTLV+ DE+HH GDAK+WGDA+REAF A RRLALTGTPFRSDDSP Sbjct 124 AAHPTLHRVRTERRKTLVILDEVHHAGDAKSWGDAVREAFTPAVRRLALTGTPFRSDDSP 183 Query 224 IPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLG 283 IPF++Y+PDADG LRS+ADH+YGY++AL DGVVRPVVFLAYSG+ RWR SAG+EY ARLG Sbjct 184 IPFINYEPDADGSLRSRADHSYGYSDALKDGVVRPVVFLAYSGETRWRTSAGDEYSARLG 243 Query 284 EPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARAY 342 EPL+AEQTARAWRTALDP GEW+P+V+ AAD RL QLR +PDAGG++IASD TA+AY Sbjct 244 EPLTAEQTARAWRTALDPSGEWIPSVLQAADTRLTQLRKGGIPDAGGLVIASDHVTAKAY 303 Query 343 ARLLTTMTAEEPTVVLSDDPGSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATN 402 A+ L +T EP VVLSDDP +S RI EF++ RW+VAVRMVSEGVDVPRL+VGVYAT+ Sbjct 304 AKTLHHITGVEPVVVLSDDPKASGRIAEFSESEDRWMVAVRMVSEGVDVPRLAVGVYATS 363 Query 403 ASTPLFFAQAIGRFVRSRRPGETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDP 462 ASTPLFFAQAIGRFVR+RRPGETAS+F+PSVP LL+LAS LE +R+HVLG+PHRE D Sbjct 364 ASTPLFFAQAIGRFVRARRPGETASVFLPSVPVLLELASQLEAERDHVLGKPHREK--DG 421 Query 463 LDGD---PATRTQTERGGAERGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIP 519 D + A R++ E G E+ FT+LGADAELDQVI+DGSSFGTA S++E DYLG+P Sbjct 422 WDDELLAEANRSRDEPGEEEKAFTSLGADAELDQVIYDGSSFGTAAFGTSEDEQDYLGLP 481 Query 520 GLLDAEQMRALLHRRQDEQLRKRAQLQKGATQPATSGASA--------SVHGQLRDLRRE 571 GLL+ +Q+RALL +RQ+EQL + A+ + + A SV ++ LR+E Sbjct 482 GLLEPDQVRALLRQRQEEQLTEVAKRESADKAAKAAKADEEAQQRKPQSVQERIHGLRKE 541 Query 572 LHTLVSIAHHRTGKPHGWIHDERRRRCGGPPIAAATRAQIKARIDALR 619 L+TLVS+ HHRT KPHG IH+E RR CGGPP A A+ Q++ RI LR Sbjct 542 LNTLVSLHHHRTRKPHGMIHNELRRVCGGPPTAMASVEQLEERIATLR 589 >gi|317508302|ref|ZP_07965982.1| type III restriction enzyme [Segniliparus rugosus ATCC BAA-974] gi|316253477|gb|EFV12867.1| type III restriction enzyme [Segniliparus rugosus ATCC BAA-974] Length=610 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/566 (66%), Positives = 444/566 (79%), Gaps = 18/566 (3%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRAL +YL + P DFLAVATPGSGKT+F LRIAAELL TV+Q+TVV PTEHL Sbjct 49 PLRTWQRRALAKYLSSSPSDFLAVATPGSGKTTFGLRIAAELLADRTVDQITVVTPTEHL 108 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA +AA GL LD +F+N+ TS ++HGV+VTYAQ+A+HP HRVRTE ++TLV+ Sbjct 109 KHQWADSAAQSGLLLDARFSNAVGMTSSDHHGVVVTYAQIAAHPARHRVRTERKRTLVLL 168 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DE+HH GDAK+WGD +REAF A RR+ALTGTPFRSDD+PIPFV Y+P DG L S+ DH Sbjct 169 DEVHHAGDAKSWGDGVREAFEGAERRVALTGTPFRSDDNPIPFVRYEPVGDGSLMSRFDH 228 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 YGYAEALADGVVRPVVFLAYSG+ARWR +AG+EY ARLGEPL+ E TARAWRTALDP+G Sbjct 229 QYGYAEALADGVVRPVVFLAYSGEARWRSNAGDEYAARLGEPLTREHTARAWRTALDPQG 288 Query 304 EWMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDP 362 +W+PAV AA RRL RA +PDAGG++IA+D+ ARAYA L +T E PTVV+SDDP Sbjct 289 DWIPAVFAAAHRRLEHKRATGMPDAGGLVIATDQDKARAYALKLREITGEAPTVVVSDDP 348 Query 363 GSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRP 422 +S +I EF++GTS+W+VAVRMVSEGVDVPRL+VGVYATN++TPL+FAQA+GRFVR+RRP Sbjct 349 SASGKIAEFSRGTSKWMVAVRMVSEGVDVPRLAVGVYATNSATPLYFAQAVGRFVRARRP 408 Query 423 GETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPL-DG--DPATRTQTERGGAE 479 GETAS+F+PSVP LL LAS LE QR+HVLG P R+ + DG + A R ++ ++ Sbjct 409 GETASVFLPSVPVLLGLASELETQRDHVLGAPKRQEEEEGWEDGLLEKANRKESTADLSQ 468 Query 480 RGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQL 539 F ALGA AELDQVI+DG+SFGTAT GSDEEADYLG+PGLLDAEQMRALL +RQ+EQL Sbjct 469 ESFEALGAQAELDQVIYDGNSFGTATFAGSDEEADYLGLPGLLDAEQMRALLSKRQEEQL 528 Query 540 RKRAQ-----LQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDER 594 +R+Q + A QP S L DLRREL+ LV+ HHRTGKPHG +H E Sbjct 529 ARRSQAPAAVVPTTAEQPGKS---------LSDLRRELNALVASYHHRTGKPHGVVHTEL 579 Query 595 RRRCGGPPIAAATRAQIKARIDALRQ 620 R + GGP +AAA+ Q+K RID LR+ Sbjct 580 RAKLGGPAVAAASAQQLKERIDLLRR 605 >gi|256375639|ref|YP_003099299.1| type III restriction protein res subunit [Actinosynnema mirum DSM 43827] gi|255919942|gb|ACU35453.1| type III restriction protein res subunit [Actinosynnema mirum DSM 43827] Length=572 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/562 (66%), Positives = 445/562 (80%), Gaps = 8/562 (1%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRAL +YL + P+DFLAVATPG+GKT+F LR+AAELL TVE VT+V PTEHL Sbjct 11 PLRAWQRRALTKYLASGPKDFLAVATPGAGKTTFGLRVAAELLADRTVEAVTIVAPTEHL 70 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA AAA G+++D F N+N TS +YHGV VTYAQVA+HPTLHRVRTE RKTLV+ Sbjct 71 KHQWAKAAAEAGIAIDSNFRNTNAVTSRDYHGVAVTYAQVAAHPTLHRVRTENRKTLVLL 130 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DE+HHGGDAK+WGDAIREAF ATRRL+LTGTPFRSDDSPIPF+SY+ ADG RS++DH Sbjct 131 DEVHHGGDAKSWGDAIREAFTPATRRLSLTGTPFRSDDSPIPFISYEHAADGTQRSRSDH 190 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 YGYA+AL DGVVRPV+FLAYSG+A WR SAGEE+ ARLGEPL+ EQTARAWRTALDP G Sbjct 191 AYGYADALRDGVVRPVIFLAYSGEAHWRTSAGEEFVARLGEPLTQEQTARAWRTALDPTG 250 Query 304 EWMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDP 362 EWMP+V+ AAD+RL QLRA+ +PDAGG++IA+D+T A+AYA +L +T + T+VLSDDP Sbjct 251 EWMPSVLMAADKRLTQLRANGIPDAGGLVIATDQTVAKAYAEILKRVTGHDATLVLSDDP 310 Query 363 GSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRP 422 +S RI EFA T RW++AVRMVSEGVDVPRL+VGVYAT+ASTPL+FAQAIGRFVRSR Sbjct 311 KASGRIAEFAATTERWMIAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAIGRFVRSRAK 370 Query 423 GETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESAHDPLDGD---PATRTQTERGGAE 479 GETAS+F+PSVP LL LAS LE QR+H+LG+PHRE D D + A +T+ E G + Sbjct 371 GETASVFLPSVPVLLGLASELEQQRDHILGKPHREK--DGWDDELLAQANQTKDEEGEED 428 Query 480 RGFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQL 539 R FT LGA AELDQVI+DGSSFGTA GS+EE +YLG+PGLL +Q+RALL +RQ++QL Sbjct 429 RAFTVLGASAELDQVIYDGSSFGTAAHVGSEEEQEYLGLPGLLAPDQVRALLRQRQEKQL 488 Query 540 RK--RAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRR 597 + + + A ASV QL LR+EL+TLV++ HHRT KPHG IH++ R Sbjct 489 VEASKRKADAPAPAAPAVTRPASVQEQLATLRKELNTLVAMHHHRTKKPHGKIHNQLREY 548 Query 598 CGGPPIAAATRAQIKARIDALR 619 CGGPP A A+ Q++ RI LR Sbjct 549 CGGPPTAMASIEQLEERIATLR 570 >gi|326384455|ref|ZP_08206135.1| type III restriction protein res subunit [Gordonia neofelifaecis NRRL B-59395] gi|326196800|gb|EGD53994.1| type III restriction protein res subunit [Gordonia neofelifaecis NRRL B-59395] Length=595 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/565 (66%), Positives = 445/565 (79%), Gaps = 10/565 (1%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRAL +YL +PRDFLAVATPG+GKT+F LR+A+ELL TVE++TVV PTEHL Sbjct 30 PLRAWQRRALTKYLTRRPRDFLAVATPGAGKTTFGLRVASELLADRTVERITVVAPTEHL 89 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA AAA G++LD F+NS TS ++ GV++TYAQVA+HP HR RT A +TLV+ Sbjct 90 KHQWAQAAARAGIALDSNFSNSTGSTSADFDGVVLTYAQVAAHPFKHRERTVAYRTLVIL 149 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DEIHHGGDAK+WGD IR+AF +A RRL+LTGTPFRSDDSPIPFV+Y+P+ G RS+ADH Sbjct 150 DEIHHGGDAKSWGDGIRDAFDEAERRLSLTGTPFRSDDSPIPFVTYEPEPGGAQRSKADH 209 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 +YGYA+AL DGVVRPVVFLAYSGQA WR SAGEE+ ARLGEPLSAEQT+RAWRTALDP G Sbjct 210 SYGYADALRDGVVRPVVFLAYSGQASWRTSAGEEFTARLGEPLSAEQTSRAWRTALDPHG 269 Query 304 EWMPAVITAADRRLRQLR-AHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDP 362 +W+PAV++AA RRL +LR + VPDAGG++IA+D+ AR YA LL +MT + P +VLSDDP Sbjct 270 DWIPAVLSAAHRRLMKLRDSGVPDAGGLVIATDQQHARDYAELLHSMTGKRPALVLSDDP 329 Query 363 GSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRP 422 SS+RI EFA W+VAVRMVSEGVDVPRL+VGVYATNASTPL+FAQAIGRFVRSRRP Sbjct 330 KSSSRIAEFAASQDEWMVAVRMVSEGVDVPRLAVGVYATNASTPLYFAQAIGRFVRSRRP 389 Query 423 GETASIFVPSVPNLLQLASALEVQRNHVLGRPHRESA--HDPLDGDPATRTQTERGGAER 480 GETAS+F+PSVP LL LAS LE +R+HVLG+PHRES D L D A + + E G E+ Sbjct 390 GETASVFLPSVPVLLDLASKLEAERDHVLGKPHRESEGLEDGLLAD-ANKREDELGEDEK 448 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 F +L ADAELDQVI+DGSSFGT T GSDEE+DYLG+PGLLDAEQ+R LL +RQ +Q+ Sbjct 449 TFESLHADAELDQVIYDGSSFGTTTLVGSDEESDYLGLPGLLDAEQVRTLLQQRQADQVT 508 Query 541 KRAQLQKG------ATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDER 594 +R+ K Q A + A L LR+EL+TLV++ HHRTGKPHG +H+E Sbjct 509 RRSAAAKARPAGDEQAQAAPNAAERQTGENLHALRKELNTLVALHHHRTGKPHGQVHNEL 568 Query 595 RRRCGGPPIAAATRAQIKARIDALR 619 R R GGPP A AT Q++ RI ALR Sbjct 569 RTRLGGPPTAMATADQLRERIKALR 593 >gi|225021255|ref|ZP_03710447.1| hypothetical protein CORMATOL_01267 [Corynebacterium matruchotii ATCC 33806] gi|305680700|ref|ZP_07403507.1| type III restriction enzyme, res subunit [Corynebacterium matruchotii ATCC 14266] gi|224945988|gb|EEG27197.1| hypothetical protein CORMATOL_01267 [Corynebacterium matruchotii ATCC 33806] gi|305658905|gb|EFM48405.1| type III restriction enzyme, res subunit [Corynebacterium matruchotii ATCC 14266] Length=569 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/567 (63%), Positives = 440/567 (78%), Gaps = 14/567 (2%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQ++AL +YL T+P DFLAVATPG+GKT+FAL++A EL TV+++ VVVPTEHLK Sbjct 5 LRVWQQQALTKYLDTKPHDFLAVATPGAGKTTFALKVATELKTRRTVDRIIVVVPTEHLK 64 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQW+ AAA GLSLDP F N++ +P+Y GV+VTYAQVA HP H T A+++LV+ D Sbjct 65 VQWSEAAARVGLSLDPAFKNTDA-INPQYDGVVVTYAQVAMHPYKHYAITTAKRSLVILD 123 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGD IREA+ DATRRLALTGTPFRSDDS IPFV Y D +G L SQADHT Sbjct 124 EIHHGGDAKSWGDGIREAYQDATRRLALTGTPFRSDDSTIPFVRYAEDGEGHLVSQADHT 183 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPVVFLAYSG+ARWR SAGEE+ ARLGEPL+AEQTARAW+TALDP+G+ Sbjct 184 YGYSDALADGVVRPVVFLAYSGEARWRTSAGEEFAARLGEPLNAEQTARAWKTALDPQGD 243 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 W+PAV+ AA RL QLR +PDAGG++IA+D+TTARAYA++L + +VVLSD+ G+ Sbjct 244 WIPAVLRAAHTRLHQLRKTIPDAGGLVIATDKTTARAYAKILAKLATTPVSVVLSDEAGA 303 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 S RI +FA T W+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSRRPGE Sbjct 304 SERIEKFAGSTDEWMVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRRPGE 363 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHRESA--HDPLDGDPATRTQTERGGAERGF 482 TAS+F+PSVP LL LA+ LEV R+HVLG+PHRE+ D L + A + +TE + + Sbjct 364 TASVFLPSVPVLLDLAAKLEVSRDHVLGKPHRETGGWDDELLAE-ANKRETE-ADQLKTY 421 Query 483 TALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLRKR 542 +LGA+AELD +I+DGSS+GTAT GS EEADYLG+PGLLDAEQMR LL +RQ+EQL R Sbjct 422 ESLGAEAELDTLIYDGSSYGTATVAGSSEEADYLGLPGLLDAEQMRQLLRKRQEEQLNVR 481 Query 543 AQLQKGATQPATSGASAS---------VHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDE 593 + K A + S+ ++ LR+EL+ LV+I RTG+PHG IH E Sbjct 482 EREAKEAAKREQEARSSQGRKDAEERLASQEIPQLRKELNALVAITASRTGRPHGSIHTE 541 Query 594 RRRRCGGPPIAAATRAQIKARIDALRQ 620 R++CGGPP A + Q++ RI+ LR+ Sbjct 542 ARQKCGGPPTAMCSAEQLRERINYLRR 568 >gi|339295753|gb|AEJ47864.1| hypothetical protein CCDC5079_2674 [Mycobacterium tuberculosis CCDC5079] Length=399 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%) Query 25 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 84 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF Sbjct 1 MLHFTAATSRFRLGRERANSVRSDGGWGVLQPVSATFNPPLRGWQRRALVQYLGTQPRDF 60 Query 85 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 144 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN Sbjct 61 LAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLKVQWAHAAAAHGLSLDPKFAN 120 Query 145 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 204 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG Sbjct 121 SNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFDEIHHGGDAKTWGDAIREAFG 180 Query 205 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 264 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY Sbjct 181 DATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHTYGYAEALADGVVRPVVFLAY 240 Query 265 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 324 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV Sbjct 241 SGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGEWMPAVITAADRRLRQLRAHV 300 Query 325 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAQG 374 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFA G Sbjct 301 PDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGSSARITEFAPG 350 >gi|300858630|ref|YP_003783613.1| hypothetical protein cpfrc_01213 [Corynebacterium pseudotuberculosis FRC41] gi|300686084|gb|ADK29006.1| hypothetical protein cpfrc_01213 [Corynebacterium pseudotuberculosis FRC41] gi|302206339|gb|ADL10681.1| Type III restriction endonuclease, res subunit [Corynebacterium pseudotuberculosis C231] gi|302330896|gb|ADL21090.1| Type III restriction endonuclease, res subunit [Corynebacterium pseudotuberculosis 1002] gi|308276581|gb|ADO26480.1| Type III restriction endonuclease, res subunit [Corynebacterium pseudotuberculosis I19] Length=569 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/569 (63%), Positives = 440/569 (78%), Gaps = 18/569 (3%) Query 65 LRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHLK 124 LR WQR+AL +YL PRDFLAVATPG+GKT+FALR+A EL TV+++ VVVPTEHLK Sbjct 5 LRAWQRKALTKYLMKGPRDFLAVATPGAGKTTFALRVATELKESRTVDRIIVVVPTEHLK 64 Query 125 VQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVFD 184 VQWA +AA GLSLDP F NS+ +P+Y G++VTYAQVA HP H + A+++LV+ D Sbjct 65 VQWAQSAARVGLSLDPYFKNSDA-VNPQYDGIVVTYAQVAMHPFKHHAVSTAKRSLVIMD 123 Query 185 EIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADHT 244 EIHHGGDAK+WGD IR+A+GD RRLALTGTPFRSDDS IPFV Y+ D +G L SQ+DHT Sbjct 124 EIHHGGDAKSWGDGIRDAYGDVERRLALTGTPFRSDDSTIPFVRYEEDGEGHLVSQSDHT 183 Query 245 YGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEGE 304 YGY++ALADGVVRPVVFLAYSG+ARWR +AGEE+ ARLGEPLS EQTARAW+TALDP G+ Sbjct 184 YGYSDALADGVVRPVVFLAYSGEARWRTNAGEEFAARLGEPLSPEQTARAWKTALDPRGD 243 Query 305 WMPAVITAADRRLRQLRAHVPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDPGS 364 W+PAV+ AA RL QLR H+PDAGG++IA+D+TTARAYA++L ++++ TVVLSD+ G+ Sbjct 244 WIPAVLQAAHTRLLQLRKHIPDAGGLVIATDKTTARAYAKILESLSSTPVTVVLSDEAGA 303 Query 365 SARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRPGE 424 S RI +F T W+VAVRMVSEGVDVPRL+VGVYAT+ASTPLFFAQAIGRFVRSRR GE Sbjct 304 SQRIEDFNGSTDEWMVAVRMVSEGVDVPRLAVGVYATSASTPLFFAQAIGRFVRSRRKGE 363 Query 425 TASIFVPSVPNLLQLASALEVQRNHVLGRPHR--ESAHDPLDGDPATRTQTERGGAERGF 482 TAS+F+PSVP LL LA+ LE R+HVLG+P R E D L A + +TE+ + Sbjct 364 TASVFLPSVPVLLDLAAKLENSRDHVLGKPDRPSEGWDDELLAQ-ANKEETEKDDLP-SY 421 Query 483 TALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQL--- 539 +LGADAELD +I+DGSS+GT T GSDEEADYLG+PGLLDA+QMRALL +RQ EQL Sbjct 422 ESLGADAELDSLIYDGSSYGTGTFAGSDEEADYLGLPGLLDADQMRALLRKRQTEQLDAR 481 Query 540 ----RKRAQLQKGAT----QPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIH 591 ++R +L+ Q +G ASV ++ LR+EL+ LVS+ RTG+PHG IH Sbjct 482 DAEAKQREKLENSVKVTQQQSEPAGDIASV--EIPRLRKELNALVSVTASRTGRPHGAIH 539 Query 592 DERRRRCGGPPIAAATRAQIKARIDALRQ 620 E R++CGGPP A + Q++ RID LR+ Sbjct 540 TEVRKKCGGPPTAMCSAEQLQTRIDYLRR 568 >gi|296394432|ref|YP_003659316.1| type III restriction protein res subunit [Segniliparus rotundus DSM 44985] gi|296181579|gb|ADG98485.1| type III restriction protein res subunit [Segniliparus rotundus DSM 44985] Length=610 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/559 (67%), Positives = 439/559 (79%), Gaps = 7/559 (1%) Query 64 PLRGWQRRALVQYLGTQPRDFLAVATPGSGKTSFALRIAAELLRYHTVEQVTVVVPTEHL 123 PLR WQRRAL +YL + P DFLAVATPGSGKT+F LRIAAELL TV+QVTVV PTEHL Sbjct 50 PLRAWQRRALAKYLSSAPTDFLAVATPGSGKTTFGLRIAAELLADRTVDQVTVVTPTEHL 109 Query 124 KVQWAHAAAAHGLSLDPKFANSNPQTSPEYHGVMVTYAQVASHPTLHRVRTEARKTLVVF 183 K QWA +A A GL LD +F+N+ TS + HGV+VTYAQVA+HP HRVRTE R+TLV+ Sbjct 110 KHQWAASAEAAGLLLDSRFSNAVGATSSDNHGVVVTYAQVAAHPARHRVRTERRRTLVLL 169 Query 184 DEIHHGGDAKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVSYQPDADGVLRSQADH 243 DE+HH GDAK+WG+A REAF A RR+ALTGTPFRSDD+PIPFV Y+P DG L S++DH Sbjct 170 DEVHHAGDAKSWGEATREAFEGAERRVALTGTPFRSDDNPIPFVRYEPVGDGSLMSRSDH 229 Query 244 TYGYAEALADGVVRPVVFLAYSGQARWRDSAGEEYEARLGEPLSAEQTARAWRTALDPEG 303 YGYA+ALADGVVRPVVFLAYSG+ARWR +AG+EY ARLG+PL+ E TARAWRTALDP G Sbjct 230 HYGYAQALADGVVRPVVFLAYSGEARWRSNAGDEYAARLGDPLTREHTARAWRTALDPHG 289 Query 304 EWMPAVITAADRRLRQLRAH-VPDAGGMIIASDRTTARAYARLLTTMTAEEPTVVLSDDP 362 +W+PAV AA RRL RA +PDAGG++IA+D+ ARAYA L +T E PTVV+SDDP Sbjct 290 DWIPAVFAAAHRRLEHKRASGMPDAGGLVIATDQDKARAYAVRLREITGEAPTVVVSDDP 349 Query 363 GSSARITEFAQGTSRWLVAVRMVSEGVDVPRLSVGVYATNASTPLFFAQAIGRFVRSRRP 422 +SA+I EF++GTS+WLVAVRMVSEGVDVPRL VGVYAT+++TPL+FAQA+GRFVR+RRP Sbjct 350 SASAKIAEFSKGTSKWLVAVRMVSEGVDVPRLCVGVYATSSATPLYFAQAVGRFVRARRP 409 Query 423 GETASIFVPSVPNLLQLASALEVQRNHVLGRP--HRESAHDPLDGDPATRTQTERGGAER 480 GETAS+F+PSVP LL LAS LE QR+HVLG P H E D L + A RTQ+ Sbjct 410 GETASVFLPSVPVLLGLASELEAQRDHVLGAPKRHEEGWEDELLSE-ANRTQSTADLPPE 468 Query 481 GFTALGADAELDQVIFDGSSFGTATPTGSDEEADYLGIPGLLDAEQMRALLHRRQDEQLR 540 F ALGA AELDQVI+DG+SFGTAT GSDEEADYLG+PGLLDAEQMRALL +RQ+EQL Sbjct 469 AFEALGAQAELDQVIYDGNSFGTATFAGSDEEADYLGLPGLLDAEQMRALLSKRQEEQLA 528 Query 541 KRAQLQKGATQPATSGASASVHGQLRDLRRELHTLVSIAHHRTGKPHGWIHDERRRRCGG 600 +R+Q+ P + + L DLRREL+ LV+ HHRTGKPHG +H E R + GG Sbjct 529 RRSQV---VVAPEPARLAGGDGKSLADLRRELNALVAAYHHRTGKPHGVVHTELRAKLGG 585 Query 601 PPIAAATRAQIKARIDALR 619 P +AAA+ Q+K RI+ LR Sbjct 586 PAVAAASAHQLKERIELLR 604 Lambda K H 0.318 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1438247500800 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40