BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2925c
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tub... 479 1e-133
gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Do... 479 1e-133
gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium ... 416 1e-114
gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium ... 401 4e-110
gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III)... 394 5e-108
gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ul... 382 2e-104
gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacte... 382 2e-104
gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium lep... 382 3e-104
gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avi... 379 2e-103
gi|336459093|gb|EGO38042.1| ribonuclease III [Mycobacterium aviu... 378 5e-103
gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium av... 377 7e-103
gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium ... 375 3e-102
gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium ... 370 1e-100
gi|342858221|ref|ZP_08714876.1| ribonuclease III [Mycobacterium ... 367 9e-100
gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium sm... 362 2e-98
gi|333991297|ref|YP_004523911.1| ribonuclease III Rnc [Mycobacte... 357 8e-97
gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium... 356 2e-96
gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium va... 338 4e-91
gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp... 335 4e-90
gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium... 325 5e-87
gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicocc... 310 1e-82
gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinic... 300 2e-79
gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofe... 299 2e-79
gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella ... 294 9e-78
gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus e... 293 2e-77
gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus o... 289 2e-76
gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jost... 289 3e-76
gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus e... 289 3e-76
gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia ... 288 4e-76
gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus er... 287 1e-75
gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora... 285 4e-75
gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispor... 284 7e-75
gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospor... 284 7e-75
gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospor... 284 7e-75
gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusc... 281 5e-74
gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bron... 281 6e-74
gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1] 280 1e-73
gi|343925329|ref|ZP_08764854.1| ribonuclease 3 [Gordonia alkaniv... 277 1e-72
gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus ... 275 4e-72
gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacter... 275 6e-72
gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus r... 273 2e-71
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatosp... 268 7e-70
gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora a... 265 4e-69
gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. E... 265 4e-69
gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora t... 265 4e-69
gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EU... 264 8e-69
gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis... 262 3e-68
gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella fla... 262 3e-68
gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnam... 261 6e-68
gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella m... 260 1e-67
>gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv]
gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=240
Score = 479 bits (1234), Expect = 1e-133, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF
Sbjct 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY
Sbjct 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA
Sbjct 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
>gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase
Iii From Mycobacterium Tuberculosis
Length=242
Score = 479 bits (1234), Expect = 1e-133, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF
Sbjct 3 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 62
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD
Sbjct 63 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 122
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY
Sbjct 123 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 182
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA
Sbjct 183 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 242
>gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478]
Length=241
Score = 416 bits (1069), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 208/231 (91%), Positives = 218/231 (95%), Gaps = 0/231 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M SRQ LLDALGVDL DELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITD L+
Sbjct 1 MTASRQSLLDALGVDLSDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELY 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRASVVNTQALADVAR L GLGVH+LLGRGEANTGGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
GMESLLGAIYLQHG+E +R+VIL+LFGPLLDAA TLGAGLDWKTSLQELTAARGLG PSY
Sbjct 121 GMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLGTPSY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 231
LVTSTGPDHDKEFTAVVVVMD+EYGSG+GRSKKEAEQKAA+AA+KALE LD
Sbjct 181 LVTSTGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYKALEALD 231
>gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=237
Score = 401 bits (1031), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 214/239 (90%), Positives = 228/239 (96%), Gaps = 2/239 (0%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ SR+ LL+ALGV+LPDELLSLALTHRSYAYE+GGLPTNERLEFLGDAVLGLTITD L+H
Sbjct 1 MTSREDLLEALGVELPDELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYH 60
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG 121
RHPDRSEGDLAKLRASVVNTQALADVAR+L A+GLGVH+ LGRGEANTGGADKSSILADG
Sbjct 61 RHPDRSEGDLAKLRASVVNTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADG 120
Query 122 MESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYL 181
MESLLGAIYLQHG++ AREVILRLFG LLDAAPTLGAGLDWKTSLQELTAARG+GAPSY+
Sbjct 121 MESLLGAIYLQHGIDTAREVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYV 180
Query 182 VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
VTSTGPDHDKEFTAVVVVMD+EYGSGVGRSKKEAEQKAAAA WKALEVLD A GKTSA
Sbjct 181 VTSTGPDHDKEFTAVVVVMDTEYGSGVGRSKKEAEQKAAAATWKALEVLDTA--GKTSA 237
>gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis
C]
gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis
C]
Length=198
Score = 394 bits (1012), Expect = 5e-108, Method: Compositional matrix adjust.
Identities = 197/198 (99%), Positives = 198/198 (100%), Gaps = 0/198 (0%)
Query 43 LEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 102
+EFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL
Sbjct 1 MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60
Query 103 GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 162
GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW
Sbjct 61 GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120
Query 163 KTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAA 222
KTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAA
Sbjct 121 KTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAA 180
Query 223 AWKALEVLDNAMPGKTSA 240
AWKALEVLDNAMPGKTSA
Sbjct 181 AWKALEVLDNAMPGKTSA 198
>gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99]
gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99]
Length=243
Score = 382 bits (982), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 198/243 (82%), Positives = 213/243 (88%), Gaps = 3/243 (1%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M SRQ LLDA+GV+LP+EL++LALTHRSYAYENGGLPTNERLEFLGDAVLGLTITD LF
Sbjct 1 MSVSRQALLDAVGVELPEELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELF 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHP+RSEGDLAKLRASVVNTQALADVAR L GLG H+LLGRGEANTGGADKSSILAD
Sbjct 61 HRHPERSEGDLAKLRASVVNTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
GMESLLGAIYL HGME ARE ILR+FGPLLDAAPTLGAGLDWKTSLQELTA+R LGAPSY
Sbjct 121 GMESLLGAIYLHHGMEVAREAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS---KKEAEQKAAAAAWKALEVLDNAMPGK 237
VTSTGPDH KEFTAVVVV ++EYGSGVGRS ++ AA A + LEVLD AMPG
Sbjct 181 AVTSTGPDHHKEFTAVVVVNNTEYGSGVGRSKKEAEQKAAAAAYQALEGLEVLDGAMPGN 240
Query 238 TSA 240
+SA
Sbjct 241 SSA 243
>gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M]
gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M]
Length=241
Score = 382 bits (981), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 197/240 (83%), Positives = 212/240 (89%), Gaps = 3/240 (1%)
Query 4 SRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRH 63
SRQ LLDA+GV+LP+EL++LALTHRSYAYENGGLPTNERLEFLGDAVLGLTITD LFHRH
Sbjct 2 SRQALLDAVGVELPEELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRH 61
Query 64 PDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGME 123
P+RSEGDLAKLRASVVNTQALADVAR L GLG H+LLGRGEANTGGADKSSILADGME
Sbjct 62 PERSEGDLAKLRASVVNTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGME 121
Query 124 SLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT 183
SLLGAIYL HGME ARE ILR+FGPLLDAAPTLGAGLDWKTSLQELTA+R LGAPSY VT
Sbjct 122 SLLGAIYLHHGMEVAREAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVT 181
Query 184 STGPDHDKEFTAVVVVMDSEYGSGVGRS---KKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
STGPDH KEFTAVVVV ++EYGSGVGRS ++ AA A + LEVLD AMPG +SA
Sbjct 182 STGPDHHKEFTAVVVVNNTEYGSGVGRSKKEAEQKAAAAAYQALEGLEVLDGAMPGNSSA 241
>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
gi|7531192|sp|O69469.1|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
Length=238
Score = 382 bits (980), Expect = 3e-104, Method: Compositional matrix adjust.
Identities = 205/239 (86%), Positives = 217/239 (91%), Gaps = 2/239 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M + RQ LLDA GVDLPDELLSLALTHRSYAYE+GGLPTNERLEFLGDAVL LTITD LF
Sbjct 1 MTQPRQALLDAFGVDLPDELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELF 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRASVVNTQALA VAR L GLGV++LLGRGE NTGGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASVVNTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
GMESLLGAIYL HG+E AR+VILRLFG LLDAAPTLGAGLDWKTSLQELTAARG+G PSY
Sbjct 121 GMESLLGAIYLHHGIEVARQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTS 239
+VTSTGPDHDKEFTAVVVVMD+EYGSG+G SKKEAEQKAA+AAWKAL+VL GKTS
Sbjct 181 VVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQKAASAAWKALDVLGGV--GKTS 237
>gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|81413486|sp|Q73VL8.1|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10]
Length=237
Score = 379 bits (973), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 213/239 (90%), Positives = 228/239 (96%), Gaps = 2/239 (0%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ SRQPLLDALGV+LPDELLSLALTHRSYAYE+GGLPTNERLEFLGDAVLGLTITDAL+H
Sbjct 1 MSSRQPLLDALGVELPDELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYH 60
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG 121
RHPDR+EGDLAKLRASVVNTQALADVAR+LC GLG H+LLGRGEANTGGADKSSILADG
Sbjct 61 RHPDRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADG 120
Query 122 MESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYL 181
MESLLGAIYLQHG++ AREVILRLFG LLDAAPTLGAGLDWKTSLQELTAARG+GAPSYL
Sbjct 121 MESLLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYL 180
Query 182 VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
VTSTGPDHDKEFTAVVVV D+EYG+GVGRSKKEAEQKAAAA WKAL+VLD+A +TSA
Sbjct 181 VTSTGPDHDKEFTAVVVVADTEYGTGVGRSKKEAEQKAAAATWKALDVLDSA--AQTSA 237
>gi|336459093|gb|EGO38042.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis
S397]
Length=237
Score = 378 bits (970), Expect = 5e-103, Method: Compositional matrix adjust.
Identities = 212/239 (89%), Positives = 227/239 (95%), Gaps = 2/239 (0%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ SRQPLLDALGV+LPDELLSLALTHRSYAYE+GGLPTNERLEFLGDAVLGLTITDAL+H
Sbjct 1 MSSRQPLLDALGVELPDELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYH 60
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG 121
RHPDR+EGDLAKLRASVVNTQALADVAR+LC GLG H+LLGRGEANTGGADKSSILADG
Sbjct 61 RHPDRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADG 120
Query 122 MESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYL 181
MESLLGAIYLQHG++ AREVILRLFG LLDAAPTLGAGLDWKTSLQELT ARG+GAPSYL
Sbjct 121 MESLLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTVARGMGAPSYL 180
Query 182 VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
VTSTGPDHDKEFTAVVVV D+EYG+GVGRSKKEAEQKAAAA WKAL+VLD+A +TSA
Sbjct 181 VTSTGPDHDKEFTAVVVVADTEYGTGVGRSKKEAEQKAAAATWKALDVLDSA--AQTSA 237
>gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104]
gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291]
gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104]
Length=237
Score = 377 bits (969), Expect = 7e-103, Method: Compositional matrix adjust.
Identities = 213/239 (90%), Positives = 227/239 (95%), Gaps = 2/239 (0%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ SRQPLLDALGV+LPDELLSLALTHRSYAYE+GGLPTNERLEFLGDAVLGLTITDAL+H
Sbjct 1 MSSRQPLLDALGVELPDELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYH 60
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG 121
RHPDR+EGDLAKLRASVVNTQALADVAR+LC GLG H+LLGRGEANTGGADKSSILADG
Sbjct 61 RHPDRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADG 120
Query 122 MESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYL 181
MESLLGAIYLQHG++ AREVILRLFG LLDAAPTLGAGLDWKTSLQELTAARG+GAPSYL
Sbjct 121 MESLLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYL 180
Query 182 VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA 240
VTSTGPDHDKEFTAVVVV D+EYG+GVGRSKKEAEQKAAAA WKAL+VLD A +TSA
Sbjct 181 VTSTGPDHDKEFTAVVVVADTEYGTGVGRSKKEAEQKAAAATWKALDVLDPA--AQTSA 237
>gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210]
Length=188
Score = 375 bits (963), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 187/188 (99%), Positives = 188/188 (100%), Gaps = 0/188 (0%)
Query 53 LTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 112
+TITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA
Sbjct 1 MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60
Query 113 DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 172
DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA
Sbjct 61 DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120
Query 173 RGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDN 232
RGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDN
Sbjct 121 RGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDN 180
Query 233 AMPGKTSA 240
AMPGKTSA
Sbjct 181 AMPGKTSA 188
>gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950]
Length=235
Score = 370 bits (950), Expect = 1e-100, Method: Compositional matrix adjust.
Identities = 209/236 (89%), Positives = 222/236 (95%), Gaps = 1/236 (0%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ SRQ LLDALGV+LPDELLSLALTHRSYAYE+GGLPTNERLEFLGDAVLGLTITD L+H
Sbjct 1 MSSRQALLDALGVELPDELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYH 60
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG 121
RHPDRSEGDLAKLRASVVNTQALADV R+LC GLGVH+LLGRGEANTGGADKSSILADG
Sbjct 61 RHPDRSEGDLAKLRASVVNTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADG 120
Query 122 MESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYL 181
MESLLGAIYL+HG++ AREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAAR +GAPSY+
Sbjct 121 MESLLGAIYLEHGIDVAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYV 180
Query 182 VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGK 237
VTSTGPDHDKEFTAVVVV D+EYGSGVGRSKKEAEQKAAAA WKALE LD +PG
Sbjct 181 VTSTGPDHDKEFTAVVVVADTEYGSGVGRSKKEAEQKAAAATWKALEALDT-VPGS 235
>gi|342858221|ref|ZP_08714876.1| ribonuclease III [Mycobacterium colombiense CECT 3035]
gi|342133925|gb|EGT87105.1| ribonuclease III [Mycobacterium colombiense CECT 3035]
Length=237
Score = 367 bits (941), Expect = 9e-100, Method: Compositional matrix adjust.
Identities = 205/238 (87%), Positives = 224/238 (95%), Gaps = 2/238 (0%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ SRQ LLDALGV+L +ELLSLALTHRSYAYE+GGLPTNERLEFLGDAVLGLTITD L+H
Sbjct 1 MSSRQLLLDALGVELSEELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYH 60
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG 121
RHPDR+EGDLAKLRASVVNTQALADVAR+LC GLGVH++LGRGEANTGGADKSSILADG
Sbjct 61 RHPDRTEGDLAKLRASVVNTQALADVARKLCEGGLGVHLMLGRGEANTGGADKSSILADG 120
Query 122 MESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYL 181
MESLLGAIYL HG++ AR+VILRLFGPLLDAAPTLGAGLDWKTSLQELTAARG+GAPSY+
Sbjct 121 MESLLGAIYLDHGIDVARKVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYV 180
Query 182 VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTS 239
VTSTGPDHDKEFTAVVV+ ++EYG+GVGRSKKEAEQKAAAA WK L+VLD A GKTS
Sbjct 181 VTSTGPDHDKEFTAVVVLAETEYGTGVGRSKKEAEQKAAAATWKTLDVLDPA--GKTS 236
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length=230
Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/228 (79%), Positives = 203/228 (90%), Gaps = 0/228 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M S LL+ALGV LP ELL++ALTHRSY+YENGGLPTNERLEFLGDAVLGLTIT+ L+
Sbjct 1 MTDSHAALLEALGVALPAELLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELY 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDR+EGDLAKLRAS+VNTQALADV R L EGLG H+ LG+GE N+GGADKSSILAD
Sbjct 61 HRHPDRAEGDLAKLRASIVNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
G+ESLLGAIYL+HG+ REVILRLFG LLD APTLGAGLDWK+SLQELTAARGLGAP+Y
Sbjct 121 GVESLLGAIYLEHGLTVVREVILRLFGELLDTAPTLGAGLDWKSSLQELTAARGLGAPAY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
+VTSTGPDHDKEF+A VV+ ++EYG GVGR+KKEAE KAAA+A+K L+
Sbjct 181 VVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAASAYKTLD 228
>gi|333991297|ref|YP_004523911.1| ribonuclease III Rnc [Mycobacterium sp. JDM601]
gi|333487265|gb|AEF36657.1| ribonuclease III Rnc [Mycobacterium sp. JDM601]
Length=233
Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 176/211 (84%), Positives = 192/211 (91%), Gaps = 0/211 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M R RQ +L+ALGVDLPD+LL+LA+THRSYAYENGGLPTNERLEFLGDAVLGLTITD LF
Sbjct 1 MSRPRQAVLEALGVDLPDDLLTLAVTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELF 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDR EGDLAKLR+SVVNT ALADVAR L +GLG H+LLGRGE NTGGADKSSILAD
Sbjct 61 HRHPDRPEGDLAKLRSSVVNTAALADVARGLTEDGLGAHLLLGRGEINTGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
MESLLGA+YLQHG++ AREVILRLFGPLLD A TLGAGLDWKTSLQELTAARG+G P Y
Sbjct 121 SMESLLGAVYLQHGIDTAREVILRLFGPLLDTAATLGAGLDWKTSLQELTAARGIGVPCY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 211
V+STGPDHD+EFTA+VVV D+EYGSGVGRS
Sbjct 181 QVSSTGPDHDREFTAIVVVSDTEYGSGVGRS 211
>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1]
gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1]
Length=234
Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/228 (77%), Positives = 200/228 (88%), Gaps = 0/228 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M R LL ALG+DLP ELL++ALTHRSY+YENGG+PTNERLEFLGD+VLGLTIT+ L+
Sbjct 1 MTVDRALLLKALGIDLPAELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELY 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRAS+VNTQALADV R L GLG ++LLG+GE N+GGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASIVNTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
G+ESLLGAIYL+HG AREVILRLF LLD APTLGAGLDWK+SLQELTA+ LGAPSY
Sbjct 121 GVESLLGAIYLEHGAVAAREVILRLFSDLLDTAPTLGAGLDWKSSLQELTASLALGAPSY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
VTSTGPDHDKEFTAVV++ + E+G+GVGR+KKEAE KAA+AAW AL+
Sbjct 181 HVTSTGPDHDKEFTAVVIIAEREHGTGVGRTKKEAELKAASAAWNALQ 228
>gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1]
gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1]
Length=235
Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 180/227 (80%), Positives = 201/227 (89%), Gaps = 0/227 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M R LL+ALGVDLP ELL++ALTHRSY+YENGG+PTNERLEFLGD+VLGLTIT+ L+
Sbjct 1 MTVDRALLLEALGVDLPGELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELY 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRAS+VNTQALADV R L GLG ++LLG+GE N+GGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASIVNTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
G+ESLLGAIYL+ G E AREVILRLF LLD APTLGAGLDWK+SLQELTA+RGLGAP+Y
Sbjct 121 GVESLLGAIYLECGGEVAREVILRLFSSLLDTAPTLGAGLDWKSSLQELTASRGLGAPTY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
+VTSTGPDHDKEFTA V+V DSE G GVGR+KKEAE KAAAAAW AL
Sbjct 181 VVTSTGPDHDKEFTAAVMVGDSECGRGVGRTKKEAELKAAAAAWHAL 227
>gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS]
gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS]
gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS]
gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS]
gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS]
gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS]
Length=234
Score = 335 bits (859), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/211 (79%), Positives = 187/211 (89%), Gaps = 0/211 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
M R PLL ALGV LPD+LL++ALTHRSY+YE+GGLPTNERLEFLGD+VLGLTIT+ LF
Sbjct 1 MTLDRSPLLAALGVTLPDDLLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEELF 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRAS+VNT ALADV R+L +GLG ++LLG+GE ++GGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASIVNTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSY 180
G+ESLLGAIY+QHG+ REVILRLF LLD APTLGAGLDWK+SLQELTAARGLGAP Y
Sbjct 121 GVESLLGAIYVQHGLTVTREVILRLFAGLLDTAPTLGAGLDWKSSLQELTAARGLGAPHY 180
Query 181 LVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 211
+VTSTGPDHDKEFTA V+V D EYG GVGR+
Sbjct 181 VVTSTGPDHDKEFTATVLVTDIEYGRGVGRT 211
>gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977]
gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus]
Length=258
Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 171/217 (79%), Positives = 191/217 (89%), Gaps = 0/217 (0%)
Query 11 ALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGD 70
A+GV L DELL+LALTHRSYAYENGGLPTNERLEFLGDAVLGLTIT+ L+H HPDRSEGD
Sbjct 15 AIGVQLGDELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHSHPDRSEGD 74
Query 71 LAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIY 130
LAKLRAS+VNTQALA VAR L +GLG H+LLG+GE NTGG DKSSILADGMES+LGA+Y
Sbjct 75 LAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGMESILGAVY 134
Query 131 LQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHD 190
L+HG+E AR V+L LFG LL+ AP LGAGLDWKTSLQELTA +G GAPSY VTSTGPDHD
Sbjct 135 LEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAVTSTGPDHD 194
Query 191 KEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
KEFTA V+V D+ +G GVGRSKKEAEQKAAA AW ++
Sbjct 195 KEFTATVMVNDTAHGVGVGRSKKEAEQKAAAEAWNSI 231
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length=283
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/225 (70%), Positives = 185/225 (83%), Gaps = 0/225 (0%)
Query 3 RSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHR 62
+SR+ LL ALGV L ++LL+LALTHRSYAYENGGLPTNERLEFLGD+VLGLTIT+ L+
Sbjct 55 QSRESLLAALGVRLGEDLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGLTITEHLYRT 114
Query 63 HPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGM 122
HPD+ EG+LAK+R+SVVN ALA+VAR L GLG + LLG+GE TGG DK+SILADGM
Sbjct 115 HPDKPEGELAKIRSSVVNMHALAEVARGLGHGGLGEYFLLGKGEEMTGGRDKASILADGM 174
Query 123 ESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLV 182
ESLLGA+YL+HG++ AR V+L LF LL+ P LGAGLDWKTSLQELTA RGLG P+Y V
Sbjct 175 ESLLGAVYLEHGLDVARGVVLTLFKGLLERGPRLGAGLDWKTSLQELTAERGLGVPAYEV 234
Query 183 TSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
+ GPDHDKEFTA V+V + GSG GR+KKEAEQKAA AAW+ L
Sbjct 235 AAKGPDHDKEFTATVIVAGEDLGSGTGRTKKEAEQKAAGAAWRHL 279
>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
gi|81373706|sp|Q5YS08.1|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
Length=240
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/220 (74%), Positives = 186/220 (85%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
LL+ALGVD+ +LL LALTHRSYAYENGGLPTNERLEFLGD+VLGL+IT+ L+H HPD+S
Sbjct 17 LLEALGVDVRPDLLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLYHEHPDKS 76
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG+LAKLRASVVN ALA+VAR L GLG H+LLG+GE TGG DK SILADGMESLLG
Sbjct 77 EGELAKLRASVVNMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILADGMESLLG 136
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
A++LQHG++ AR V+LRLF LL+ P +GAGLDWKTSLQELTA RGLG PSY ++STGP
Sbjct 137 AVHLQHGIDVARGVVLRLFADLLERGPRMGAGLDWKTSLQELTAERGLGVPSYEISSTGP 196
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DHDKEFTA V+ YG GVGRSKKEAEQKAA AA++AL
Sbjct 197 DHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAGAAYQAL 236
>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length=234
Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/221 (69%), Positives = 177/221 (81%), Gaps = 0/221 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
L D LGV + DELL+LALTHRSYAYENGGLPTNERLEFLGDAVLG+ +T+ L+ PDR
Sbjct 10 LTDVLGVTIDDELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDRP 69
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG+LAK+RASVVN ALADVAR L GLG H+ LGRGE TGG DK+SILADG+ESL G
Sbjct 70 EGELAKIRASVVNMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLFG 129
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
AI+L HG+E A+ VI+ LF P++ + LGAGLDWKTSLQEL+A R LG P Y ++STGP
Sbjct 130 AIFLDHGIEVAKTVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQISSTGP 189
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
DH+KEFTAV VV E G+G G++KKEAEQ+AA AWKALE
Sbjct 190 DHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAELAWKALE 230
>gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
Length=249
Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/207 (70%), Positives = 175/207 (85%), Gaps = 0/207 (0%)
Query 5 RQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHP 64
R PLL+ALGV+L DELL+LALTHRSYAYE GGLPTNERLEFLGD+VLG+++T+ L+ HP
Sbjct 13 RTPLLEALGVELDDELLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWLYVTHP 72
Query 65 DRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMES 124
D+ EG+LAK+RASVVN ALA VAR+L GLG H+ LGRGE TGG DK SILADGME+
Sbjct 73 DKPEGELAKIRASVVNMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILADGMEA 132
Query 125 LLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS 184
LLGA++++HG++ AR V+LRLF P+L + T+GAGLDWKTSLQELTA R LG P+Y +TS
Sbjct 133 LLGAVHIEHGIDTARSVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGVPAYRITS 192
Query 185 TGPDHDKEFTAVVVVMDSEYGSGVGRS 211
TGPDHDKEFTAVVV+ +++ G GVGR+
Sbjct 193 TGPDHDKEFTAVVVIDEADLGEGVGRT 219
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length=256
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/220 (73%), Positives = 184/220 (84%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
LL ALGV L ++LL+LALTHRSYAYE+GGLPTNERLEFLGD+VLGLTIT+ L+ HP++S
Sbjct 20 LLAALGVPLTEDLLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYTAHPEKS 79
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG+LAK+RAS+VN ALA+VAR L GLG H+LLG+GE TGG DK SILADGMESLLG
Sbjct 80 EGELAKIRASIVNMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADGMESLLG 139
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
AI+L+HG++ AR V+L LF LL AP LGAGLDWKTSLQELTA RG+G PSY +T+TGP
Sbjct 140 AIHLEHGIDTARRVVLDLFADLLSRAPKLGAGLDWKTSLQELTAERGIGVPSYEITATGP 199
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DHDKEFTA VVV +G GVGRSKKEAEQKAA+ AW AL
Sbjct 200 DHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAASTAWSAL 239
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length=252
Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/220 (71%), Positives = 182/220 (83%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
LL ALGV++ LL+LALTHRSYAYENGGLPTNERLEFLGD+VLG+T+T+ L+ HPD+S
Sbjct 19 LLAALGVEIEPSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLAHPDKS 78
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EGDLAK+RAS+VN ALA+VAR L GLG H+LLG+GE TGG DK SILADGMES+LG
Sbjct 79 EGDLAKIRASIVNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILG 138
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
AI+L+HG++ AR V+L LF LL AP LGAGLDWKTSLQELTA RG+G P+Y +T+TGP
Sbjct 139 AIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYEITATGP 198
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DHDKEFTA V+V G G+GRSKKEAEQKAA+ AW AL
Sbjct 199 DHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
Length=252
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/220 (71%), Positives = 182/220 (83%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
LL ALGV++ LL+LALTHRSYAYENGGLPTNERLEFLGD+VLG+T+T+ L+ HPD+S
Sbjct 19 LLAALGVEIEPSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLAHPDKS 78
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EGDLAK+RAS+VN ALA+VAR L GLG H+LLG+GE TGG DK SILADGMES+LG
Sbjct 79 EGDLAKIRASIVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILG 138
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
AI+L+HG++ AR V+L LF LL AP LGAGLDWKTSLQELTA RG+G P+Y +T+TGP
Sbjct 139 AIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYEITATGP 198
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DHDKEFTA V+V G G+GRSKKEAEQKAA+ AW AL
Sbjct 199 DHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238
>gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4]
gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length=257
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/224 (70%), Positives = 182/224 (82%), Gaps = 0/224 (0%)
Query 4 SRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRH 63
+ LL A+GVD+ LL+LALTHRSYAYENGGLPTNERLEFLGD+VLG+T+T+ L+ H
Sbjct 15 NHDKLLAAVGVDIEPGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLSH 74
Query 64 PDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGME 123
PD+SEGDLAK+RASVVN ALA+VAR L GLG H+LLG+GE TGG DK SILADGME
Sbjct 75 PDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGME 134
Query 124 SLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT 183
S+LGAI+LQHG++ AR V+L LF LL AP LGAGLDWKTSLQELTA G G P Y +T
Sbjct 135 SILGAIHLQHGIDTARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEIT 194
Query 184 STGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
+TGPDHDKEFTA V++ D G GVGRSKKEAEQKAA++AWK +
Sbjct 195 ATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWKTM 238
>gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
Length=238
Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/221 (69%), Positives = 170/221 (77%), Gaps = 0/221 (0%)
Query 7 PLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 66
PLL ALGV+L ELL+LALTHRSYAYENGGLPTNERLEFLGD+VL + +T+ L+ HPD
Sbjct 6 PLLRALGVELDPELLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYLDHPDL 65
Query 67 SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 126
EG LAKLRASVVN ALA VA L +GLG H+ LGRGE TGG K+SILAD E+L+
Sbjct 66 PEGQLAKLRASVVNMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADATEALI 125
Query 127 GAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTG 186
GA+YLQHG+E +R+VI RLF LL AP LGAGLDWKTSLQELTAA LG P Y +T G
Sbjct 126 GAVYLQHGLETSRDVIHRLFADLLRNAPLLGAGLDWKTSLQELTAAAELGVPEYRITEDG 185
Query 187 PDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
PDH K FTA VV E GSG GR+KKEAEQKAAA AW+ L
Sbjct 186 PDHLKTFTATAVVGGRELGSGDGRTKKEAEQKAAALAWRTL 226
>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
Length=257
Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/220 (71%), Positives = 180/220 (82%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
LL A+GVD+ LL+LALTHRSYAYENGGLPTNERLEFLGD+VLG+T+T+ L+ HPD+S
Sbjct 19 LLAAVGVDIEPGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLSHPDKS 78
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EGDLAK+RASVVN ALA+VAR L GLG H+LLG+GE TGG DK SILADGMES+LG
Sbjct 79 EGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILG 138
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
AI+LQHG+E AR V+L LF LL AP LGAGLDWKTSLQELTA G G P Y +T+TGP
Sbjct 139 AIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEITATGP 198
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DHDKEFTA V++ G GVGRSKKEAEQKAA++AWK +
Sbjct 199 DHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWKTM 238
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length=296
Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/228 (67%), Positives = 173/228 (76%), Gaps = 3/228 (1%)
Query 3 RSRQP---LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDAL 59
R R P L A GV L ELL ALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT AL
Sbjct 6 RRRAPIGHLEAAFGVSLDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTAL 65
Query 60 FHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILA 119
FH HPD EG LAKLRASVVN +ALADVAR L +GLG ++LLG+GE +TGG DK+SILA
Sbjct 66 FHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILA 125
Query 120 DGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPS 179
D +E+LLGAIYLQ+G++ A VI RLF PL+ + GA LDWKTSLQELTAA GLG P
Sbjct 126 DTLEALLGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPE 185
Query 180 YLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
Y + TGPDH K FTA VVV + YG GRSKKEAEQ+AA +AW+ L
Sbjct 186 YRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWREL 233
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length=287
Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 147/217 (68%), Positives = 168/217 (78%), Gaps = 0/217 (0%)
Query 11 ALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGD 70
A GV + ELL ALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT ALFH HPD EG
Sbjct 17 AFGVSMDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQ 76
Query 71 LAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIY 130
LAKLRASVVN +ALADVAR L +GLG ++LLG+GE TGG DK+SILAD +E+LLGAIY
Sbjct 77 LAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTLEALLGAIY 136
Query 131 LQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHD 190
LQ+G++ A EVI RLF PL+ + GA LDWKTSLQELTAA GLG P Y + GPDH
Sbjct 137 LQYGLDTAAEVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGAGPDHL 196
Query 191 KEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
K FTA VVV + YG GRSKKEAEQ+AA +AW+ L
Sbjct 197 KTFTAWVVVAGNRYGGADGRSKKEAEQRAAESAWRTL 233
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length=267
Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/228 (67%), Positives = 172/228 (76%), Gaps = 3/228 (1%)
Query 3 RSRQP---LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDAL 59
R R P L A GV L ELL ALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT AL
Sbjct 6 RRRAPVGHLEAAFGVSLDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTAL 65
Query 60 FHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILA 119
FH HPD EG LAKLRASVVN +ALADVAR L +GLG ++LLG+GE TGG DK+SILA
Sbjct 66 FHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILA 125
Query 120 DGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPS 179
D +E+LLGAIYLQ+G++ A VI RLF PL+ + GA LDWKTSLQELTAA GLG P
Sbjct 126 DTLEALLGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPE 185
Query 180 YLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
Y + TGPDH K FTA VVV + YG GRSKKEAEQ+AA +AW+ L
Sbjct 186 YRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length=267
Score = 284 bits (727), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/228 (67%), Positives = 172/228 (76%), Gaps = 3/228 (1%)
Query 3 RSRQP---LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDAL 59
R R P L A GV L ELL ALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT AL
Sbjct 6 RRRAPVGHLEAAFGVSLDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTAL 65
Query 60 FHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILA 119
FH HPD EG LAKLRASVVN +ALADVAR L +GLG ++LLG+GE TGG DK+SILA
Sbjct 66 FHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILA 125
Query 120 DGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPS 179
D +E+LLGAIYLQ+G++ A VI RLF PL+ + GA LDWKTSLQELTAA GLG P
Sbjct 126 DTLEALLGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPE 185
Query 180 YLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
Y + TGPDH K FTA VVV + YG GRSKKEAEQ+AA +AW+ L
Sbjct 186 YRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRTL 233
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length=240
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 142/218 (66%), Positives = 171/218 (79%), Gaps = 3/218 (1%)
Query 10 DALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEG 69
+ +GV++ ++L+ ALTHRSYAYENGGLPTNERLEFLGD+VLGL +TD L+ HPD SEG
Sbjct 15 ETVGVEIAPDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEG 74
Query 70 DLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAI 129
LAKLRA+VVN +ALADVAR L G+G +V LGRGE TGG DKSSILAD +E+L+GA+
Sbjct 75 QLAKLRAAVVNMRALADVAREL---GIGRYVRLGRGEEATGGRDKSSILADTLEALIGAV 131
Query 130 YLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDH 189
YL G+++A E++ RLF PL+ A LGAGLDWKTSLQELTAA LG P Y+V +GPDH
Sbjct 132 YLDRGLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPDH 191
Query 190 DKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
K F A V V YGSG GRSKKEAEQ+AA +AWKA+
Sbjct 192 QKTFRATVRVAGQTYGSGEGRSKKEAEQQAAESAWKAI 229
>gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247]
gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247]
Length=262
Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 147/220 (67%), Positives = 178/220 (81%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
LL A+ + ++LL+LALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT+ L+ +PDR
Sbjct 13 LLTAVDTTIGEQLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRP 72
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG+LAK+RASVVN ALADVAR L GLG H+ LGRGE TGG DK SILADG+ESL G
Sbjct 73 EGELAKIRASVVNMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKDSILADGLESLFG 132
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
A++++HG+ ++ VILRLF ++D A TLGAGLDWKTSLQEL+A +GLG P Y ++STGP
Sbjct 133 AVFIEHGLATSKRVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQISSTGP 192
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DH+KEFTAV VV G+GVGR+KKEAEQ+AAA AWK L
Sbjct 193 DHNKEFTAVAVVAGESLGNGVGRTKKEAEQQAAARAWKTL 232
>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
Length=249
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/231 (65%), Positives = 173/231 (75%), Gaps = 5/231 (2%)
Query 2 IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFH 61
+ R PLL ALGV+L +ELL+LALTHRSYAYE+GGLPTNERLEFLGD+VL + IT+ L+
Sbjct 10 VTDRSPLLSALGVELDEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYR 69
Query 62 RHPDRSEGDLAKLRASVVNTQALADVARRL-----CAEGLGVHVLLGRGEANTGGADKSS 116
HPD EG LAKLRASVVN ALA VA L ++GLG ++ LGRGE TGG K+S
Sbjct 70 DHPDLPEGQLAKLRASVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKAS 129
Query 117 ILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLG 176
ILAD E+LLGA+YLQHG+E +RE++ RLF LL +AP LGAGLDWKTSLQELTAA G G
Sbjct 130 ILADATEALLGAVYLQHGLEPSRELVHRLFADLLHSAPLLGAGLDWKTSLQELTAAGGHG 189
Query 177 APSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
P Y + GPDH K FTA VV + GSG GR+KKEAEQKAA AW+ L
Sbjct 190 VPEYRIDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAAELAWRTL 240
>gi|343925329|ref|ZP_08764854.1| ribonuclease 3 [Gordonia alkanivorans NBRC 16433]
gi|343764768|dbj|GAA11780.1| ribonuclease 3 [Gordonia alkanivorans NBRC 16433]
Length=241
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/224 (66%), Positives = 179/224 (80%), Gaps = 1/224 (0%)
Query 5 RQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHP 64
R+ LL AL D+P++LL+LALTHRSYAYE+GGLPTNERLEFLGD+VLG+ IT+ L+ P
Sbjct 10 RRALLAALDTDIPEDLLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGVVITERLYLHFP 69
Query 65 DRSEGDLAKLRASVVNTQALADVARRLCAEG-LGVHVLLGRGEANTGGADKSSILADGME 123
DR EG+LAK+RASVVN ALADVAR L EG LG ++ LGRGE TGG DK SILADG+E
Sbjct 70 DRPEGELAKIRASVVNMHALADVARGLGDEGGLGKYLYLGRGEEMTGGRDKDSILADGLE 129
Query 124 SLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT 183
SL GA++L HG+E ++ +ILRLF ++ A LGAGLDWKTSLQEL++ RG G P Y ++
Sbjct 130 SLFGAVFLSHGLETSQRIILRLFDERIEKAGQLGAGLDWKTSLQELSSERGYGPPQYQIS 189
Query 184 STGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
STGPDH+KEFTA+ ++ G GVGR+KKEAEQ+AAA AWKAL
Sbjct 190 STGPDHNKEFTAIAMIAGENLGEGVGRTKKEAEQQAAAHAWKAL 233
>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
Length=338
Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/229 (60%), Positives = 176/229 (77%), Gaps = 0/229 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
L ++LGV L D L++LALTHRS+A E+G +PTNERLEFLGD VLGL +T+ L+ HPD+
Sbjct 107 LFESLGVTLQDSLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHPDKE 166
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG+LAKLRA++V+T +LA++ARRL GLG ++ LG GE TGG +K SILADG+E+++G
Sbjct 167 EGELAKLRANIVSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEAVIG 226
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
A+++Q+G+EKAREV+L L PLL A LGAGLDWKTSLQEL A RGL P Y VT GP
Sbjct 227 AVHIQYGIEKAREVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVTEAGP 286
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMPG 236
DH+K FTAVV++ + G+G GR+KKEAE KAA AW + D A+PG
Sbjct 287 DHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHAWGVISGEDVALPG 335
>gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
Length=139
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF
Sbjct 1 MIRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALF 60
Query 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD
Sbjct 61 HRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILAD 120
Query 121 GMESLLGAIYLQHGMEK 137
GMESLLGAIYLQHGMEK
Sbjct 121 GMESLLGAIYLQHGMEK 137
>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length=347
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/228 (61%), Positives = 174/228 (77%), Gaps = 0/228 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
L D++GV L + LL+LALTHRS+A E+G +PTNERLEFLGD VLGL IT+ L+ HPD+
Sbjct 116 LFDSIGVTLQESLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHPDKE 175
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG+LAKLRA++V+T +LA++ARRL GLG ++ LG GE TGG +K SILADG+E+LLG
Sbjct 176 EGELAKLRANIVSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEALLG 235
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
A+++Q+G+EKAREV+L L PLL A LGAGLDWKTSLQEL A RGL P Y V GP
Sbjct 236 AVHIQYGIEKAREVVLHLCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVAEAGP 295
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMP 235
DH+K FTAVV++ + G+G GR+KKEAE KAA AW + D A+P
Sbjct 296 DHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHAWGVISGEDVALP 343
>gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length=269
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 138/222 (63%), Positives = 167/222 (76%), Gaps = 3/222 (1%)
Query 12 LGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDL 71
LG L LL ALTHRSYAYENGGLPTNERLEFLGD+VLGL +TD L+ HP+ +EG L
Sbjct 35 LGYSLERALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRLHPEVAEGTL 94
Query 72 AKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYL 131
AKLRA+VVN++ALA+V R L LG + LG+GE TGG DKSSILAD +E+++GA YL
Sbjct 95 AKLRAAVVNSRALAEVGRGLD---LGAFIRLGKGEEGTGGRDKSSILADTVEAVIGATYL 151
Query 132 QHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDK 191
G++ A E + RLF PL+ + LGAGLDWKTSLQELTAA GLG P Y+VT +GPDH+K
Sbjct 152 DQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVVTESGPDHEK 211
Query 192 EFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNA 233
FTA V ++GSG GRSKKEAEQKAA +AW+A++ A
Sbjct 212 TFTAAARVAGQDHGSGSGRSKKEAEQKAAESAWRAIKAQHEA 253
>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
Length=252
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/217 (69%), Positives = 166/217 (77%), Gaps = 0/217 (0%)
Query 11 ALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGD 70
A GV L ELL ALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT ALFH HPD EG
Sbjct 17 AFGVALDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQ 76
Query 71 LAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIY 130
LAKLRASVVN +ALA+VAR L GLG ++LLG+GE TGG DK+SILAD +E+LLGAIY
Sbjct 77 LAKLRASVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEALLGAIY 136
Query 131 LQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHD 190
LQ G++ A VI RLF PL+ + GA LDWKTSLQELTAA+GLG P Y + TGPDH
Sbjct 137 LQCGLDTAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEGTGPDHL 196
Query 191 KEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
K FTA VVV YG GRSKKEAEQ+AA AAW+ L
Sbjct 197 KTFTAWVVVAGQRYGGAEGRSKKEAEQRAAEAAWRTL 233
>gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c]
gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c]
Length=319
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 138/212 (66%), Positives = 165/212 (78%), Gaps = 1/212 (0%)
Query 17 PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRA 76
PD LL ALTHRSYAYENGGLPTNERLEFLGDAVL L +TDAL++RHPD EG LAK RA
Sbjct 43 PD-LLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRA 101
Query 77 SVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGME 136
SVVN++ALADVAR + +G+G ++LLG+GE TGG DK+SILAD +E+L+GA+YL+ G+E
Sbjct 102 SVVNSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLE 161
Query 137 KAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAV 196
A +++ R F PLLD A GAGLDWKTSLQE TA G+G P Y+VT +GPDH K FTA
Sbjct 162 VAAQLVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGMGPPDYVVTDSGPDHAKRFTAR 221
Query 197 VVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
+ D YG G G SKKEAEQ+AA A+ ALE
Sbjct 222 ARISDRIYGEGEGGSKKEAEQRAAERAFLALE 253
>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
Length=252
Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/229 (66%), Positives = 172/229 (76%), Gaps = 4/229 (1%)
Query 3 RSRQPLLD----ALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 58
+ R+P++ A GV L ELL ALTHRSYAYENGGLPTNERLEFLGD+VLG+ IT A
Sbjct 5 KRRRPVVGHLEAAFGVALDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTA 64
Query 59 LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 118
LFH HPD EG LAKLRASVVN +ALA+VAR L GLG ++LLG+GE +TGG DK+SIL
Sbjct 65 LFHNHPDLPEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASIL 124
Query 119 ADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAP 178
AD +E+LLGAIYL+ G+E VI RLF PL+ + GA LDWKTSLQELTAA+GLG P
Sbjct 125 ADTLEALLGAIYLESGLETVATVIHRLFDPLMAESAGRGAALDWKTSLQELTAAQGLGVP 184
Query 179 SYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
Y + TGPDH K FTA VVV YG GRSKKEAEQ+AA AAW+ L
Sbjct 185 EYRIEGTGPDHLKTFTAWVVVAGRRYGGAEGRSKKEAEQRAAEAAWRTL 233
>gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f]
gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f]
Length=281
Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/224 (65%), Positives = 165/224 (74%), Gaps = 0/224 (0%)
Query 5 RQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHP 64
R L++AL VD+ ELL ALTHRSYAYENGGLPTNERLEFLGDAVLGL +T ALF RHP
Sbjct 11 RDGLVEALQVDVDPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHP 70
Query 65 DRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMES 124
D EG LAK RASVVN +ALADVARR+ G+G ++LLGRGE TGG DK SILAD +E+
Sbjct 71 DLPEGQLAKQRASVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEA 130
Query 125 LLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS 184
++GA+YL + ++ A + RLF PLLD A GAGLDWKTSLQE TA GLG P Y+VT
Sbjct 131 VIGAVYLSNSLDVASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYVVTE 190
Query 185 TGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
GPDH K FTA V G G G SKKEAEQ+AAA A+ LE
Sbjct 191 AGPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAATAFAMLE 234
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length=234
Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/220 (67%), Positives = 171/220 (78%), Gaps = 0/220 (0%)
Query 8 LLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 67
+L+ALGV L ELL L+LTHRSYAYENGGLP NERLEFLGDAVLGL +TD L++ HPD
Sbjct 1 MLEALGVILDPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLP 60
Query 68 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLG 127
EG LAKLRASVVN ALA VAR L GLG H+LLG+GE TGG DK+SILADG+E+++G
Sbjct 61 EGQLAKLRASVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIG 120
Query 128 AIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGP 187
A+YL+HG+E AR+++ LF LL AP GAGLDWKTSLQELTA+ GLG P Y V TGP
Sbjct 121 AVYLEHGIEIARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVEDTGP 180
Query 188 DHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
DH KEFTA V+V G G G +KKEAEQKAA AW++L
Sbjct 181 DHRKEFTATVLVAGRPLGHGAGSTKKEAEQKAAETAWRSL 220
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length=249
Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/216 (63%), Positives = 162/216 (75%), Gaps = 3/216 (1%)
Query 12 LGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDL 71
LGV L DELL A THRS+AYENGGLPTNERLEFLGD+VLG+ +T++LF HPD SEG L
Sbjct 23 LGVSLADELLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNHPDLSEGRL 82
Query 72 AKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYL 131
AKLRA+VVN +ALA VAR L LG ++ LGRGE TGG DKSSILAD +E+L+GA+YL
Sbjct 83 AKLRAAVVNMRALAGVARDLK---LGKYLRLGRGEEATGGRDKSSILADCVEALIGAVYL 139
Query 132 QHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDK 191
G E A V+ LF L++++ LGAGLDWKTSLQEL A G+G P Y++ +GPDH K
Sbjct 140 DRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELVAQLGVGVPEYVIAESGPDHAK 199
Query 192 EFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 227
F A V + YG G+GRSKKEAEQ+AA AWKAL
Sbjct 200 TFEARVRIGSDTYGHGIGRSKKEAEQQAAETAWKAL 235
>gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4]
gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4]
Length=237
Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 140/225 (63%), Positives = 165/225 (74%), Gaps = 2/225 (0%)
Query 6 QP-LLDA-LGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRH 63
QP LDA LGV LP L + ALTHRSYAYE+GGLP NERLEFLGDAVL L +T+ L++ +
Sbjct 4 QPSALDAVLGVALPAGLATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAY 63
Query 64 PDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGME 123
PDR EGDLAK+RAS+VNT LAD+AR L GLG H+ LGRGE TGG DK SILAD +E
Sbjct 64 PDRPEGDLAKIRASLVNTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLE 123
Query 124 SLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT 183
++ G++YL HG+E AR +I ++ G L P LGA LDWKTSLQE A+ G Y +T
Sbjct 124 AVFGSVYLTHGLETARGLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEIT 183
Query 184 STGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
STGPDHDK F+AVV V D G G GR+KKEAEQKAA AW AL+
Sbjct 184 STGPDHDKTFSAVVFVGDDPLGEGTGRTKKEAEQKAAEQAWAALD 228
>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
Length=249
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/218 (64%), Positives = 167/218 (77%), Gaps = 3/218 (1%)
Query 11 ALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGD 70
ALGV+L EL+ LALTHRS+AYE+GGLPTNERLEFLGD+VLG+ +T+ L+ HP+ EG
Sbjct 16 ALGVELSPELVVLALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGR 75
Query 71 LAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIY 130
LAKLRASVVN ALA V R + GLG + LG+GE TGG DKSSI+AD +E+++GA+Y
Sbjct 76 LAKLRASVVNMHALAGVGRTI---GLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVY 132
Query 131 LQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHD 190
LQHG+E AR V+LRLF LL AP LGAGLDWKTSLQEL A RGLG P Y V+ GPDH
Sbjct 133 LQHGLEVARAVVLRLFADLLATAPQLGAGLDWKTSLQELAAERGLGVPEYRVSEEGPDHA 192
Query 191 KEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALE 228
K F A V++ S G+G GR+KKEAEQ AAAAA+ L+
Sbjct 193 KVFAARVLLSGSARGTGTGRTKKEAEQNAAAAAYTGLQ 230
Lambda K H
0.315 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 332206503090
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40