BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2929

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610066|ref|NP_217445.1|  hypothetical protein Rv2929 [Mycoba...   210    7e-53
gi|340627920|ref|YP_004746372.1|  hypothetical protein MCAN_29511...   208    2e-52
gi|302828566|ref|XP_002945850.1|  hypothetical protein VOLCADRAFT...  34.7    4.3  


>gi|15610066|ref|NP_217445.1| hypothetical protein Rv2929 [Mycobacterium tuberculosis H37Rv]
 gi|15842475|ref|NP_337512.1| hypothetical protein MT2998.1 [Mycobacterium tuberculosis CDC1551]
 gi|31794106|ref|NP_856599.1| hypothetical protein Mb2954 [Mycobacterium bovis AF2122/97]
 33 more sequence titles
 Length=103

 Score =  210 bits (534),  Expect = 7e-53, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MIELSYAPDVAGRRSNWPKGSGVNTWTAIRWTFAEDSPYVGTGLERMASDTHGGGGGRPV  60
            MIELSYAPDVAGRRSNWPKGSGVNTWTAIRWTFAEDSPYVGTGLERMASDTHGGGGGRPV
Sbjct  1    MIELSYAPDVAGRRSNWPKGSGVNTWTAIRWTFAEDSPYVGTGLERMASDTHGGGGGRPV  60

Query  61   TPPPPGMHHLGCSRGVLLISSQRDAGHKTCDPAAGGTLTSVLT  103
            TPPPPGMHHLGCSRGVLLISSQRDAGHKTCDPAAGGTLTSVLT
Sbjct  61   TPPPPGMHHLGCSRGVLLISSQRDAGHKTCDPAAGGTLTSVLT  103


>gi|340627920|ref|YP_004746372.1| hypothetical protein MCAN_29511 [Mycobacterium canettii CIPT 
140010059]
 gi|340006110|emb|CCC45282.1| hypothetical protein MCAN_29511 [Mycobacterium canettii CIPT 
140010059]
Length=103

 Score =  208 bits (530),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MIELSYAPDVAGRRSNWPKGSGVNTWTAIRWTFAEDSPYVGTGLERMASDTHGGGGGRPV  60
            MIELSYAPDVAGRRSNWPKGSGVNTWTAIRWTFA+DSPYVGTGLERMASDTHGGGGGRPV
Sbjct  1    MIELSYAPDVAGRRSNWPKGSGVNTWTAIRWTFADDSPYVGTGLERMASDTHGGGGGRPV  60

Query  61   TPPPPGMHHLGCSRGVLLISSQRDAGHKTCDPAAGGTLTSVLT  103
            TPPPPGMHHLGCSRGVLLISSQRDAGHKTCDPAAGGTLTSVLT
Sbjct  61   TPPPPGMHHLGCSRGVLLISSQRDAGHKTCDPAAGGTLTSVLT  103


>gi|302828566|ref|XP_002945850.1| hypothetical protein VOLCADRAFT_55637 [Volvox carteri f. nagariensis]
 gi|300268665|gb|EFJ52845.1| hypothetical protein VOLCADRAFT_55637 [Volvox carteri f. nagariensis]
Length=327

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 20/49 (41%), Positives = 24/49 (49%), Gaps = 1/49 (2%)

Query  34   AEDSPYVGTGLERMASDTHGGGG-GRPVTPPPPGMHHLGCSRGVLLISS  81
            A  S   GT +ER+A   HG  G G    PPP G H + CS    L+ S
Sbjct  76   AARSLKAGTDIERIADFVHGADGFGDIGLPPPQGQHLMDCSAAEFLVRS  124



Lambda     K      H
   0.315    0.135    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127822873252


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40