BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2937
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610074|ref|NP_217453.1| daunorubicin-DIM-transport integral... 570 1e-160
gi|339295776|gb|AEJ47887.1| daunorubicin-DIM-transport integral ... 508 3e-142
gi|240169607|ref|ZP_04748266.1| daunorubicin-DIM-transport integ... 379 2e-103
gi|183981783|ref|YP_001850074.1| daunorubicin-DIM-transport inte... 375 4e-102
gi|118617591|ref|YP_905923.1| daunorubicin-DIM-transport integra... 373 2e-101
gi|15828267|ref|NP_302530.1| antibiotic resistance membrane prot... 341 9e-92
gi|108799796|ref|YP_639993.1| ABC transporter efflux protein Drr... 254 1e-65
gi|120404100|ref|YP_953929.1| multidrug ABC transporter inner me... 237 2e-60
gi|315444306|ref|YP_004077185.1| ABC-type multidrug transporter,... 225 8e-57
gi|145223974|ref|YP_001134652.1| ABC-2 type transporter [Mycobac... 216 3e-54
gi|54023074|ref|YP_117316.1| putative ABC transporter membrane p... 206 2e-51
gi|54026083|ref|YP_120325.1| putative ABC transporter [Nocardia ... 178 8e-43
gi|111023092|ref|YP_706064.1| multidrug ABC transporter transmem... 168 8e-40
gi|312140923|ref|YP_004008259.1| ABC transporter transmembrane p... 165 8e-39
gi|54022694|ref|YP_116936.1| putative ABC transporter membrane p... 162 7e-38
gi|226305332|ref|YP_002765290.1| ABC transporter permease protei... 159 4e-37
gi|229489591|ref|ZP_04383454.1| ABC drug resistance transporter,... 158 1e-36
gi|226365591|ref|YP_002783374.1| ABC transporter permease protei... 156 4e-36
gi|333918138|ref|YP_004491719.1| drug resistance ABC transporter... 144 2e-32
gi|343927764|ref|ZP_08767232.1| putative ABC transporter permeas... 138 1e-30
gi|262203605|ref|YP_003274813.1| ABC transporter [Gordonia bronc... 133 4e-29
gi|343928125|ref|ZP_08767582.1| putative ABC transporter permeas... 129 6e-28
gi|326385088|ref|ZP_08206758.1| ABC-2 type transporter [Gordonia... 122 9e-26
gi|296164396|ref|ZP_06846971.1| DrrB protein [Mycobacterium para... 115 1e-23
gi|296141986|ref|YP_003649228.1| ABC-2 type transporter [Tsukamu... 114 1e-23
gi|262200664|ref|YP_003271872.1| ABC transporter [Gordonia bronc... 111 1e-22
gi|118466736|ref|YP_882433.1| ABC transporter efflux protein, Dr... 110 3e-22
gi|254819603|ref|ZP_05224604.1| DrrB [Mycobacterium intracellula... 108 1e-21
gi|41407335|ref|NP_960171.1| DrrB [Mycobacterium avium subsp. pa... 105 1e-20
gi|254775700|ref|ZP_05217216.1| DrrB [Mycobacterium avium subsp.... 104 2e-20
gi|4416481|gb|AAD20381.1| daunorubicin resistance protein B [Myc... 104 2e-20
gi|342858819|ref|ZP_08715474.1| DrrB [Mycobacterium colombiense ... 100 2e-19
gi|336458157|gb|EGO37140.1| ABC-type multidrug transport system,... 94.7 1e-17
gi|118465128|ref|YP_881223.1| ABC transporter [Mycobacterium avi... 94.0 2e-17
gi|108800072|ref|YP_640269.1| ABC-2 type transporter [Mycobacter... 85.1 1e-14
gi|119869198|ref|YP_939150.1| ABC-2 type transporter [Mycobacter... 84.7 2e-14
gi|342857523|ref|ZP_08714179.1| ABC transporter [Mycobacterium c... 84.7 2e-14
gi|117927549|ref|YP_872100.1| ABC-2 type transporter [Acidotherm... 84.3 2e-14
gi|254821611|ref|ZP_05226612.1| ABC-2 type transporter [Mycobact... 83.6 4e-14
gi|297560715|ref|YP_003679689.1| ABC transporter [Nocardiopsis d... 81.6 1e-13
gi|254422505|ref|ZP_05036223.1| ABC-2 type transporter superfami... 80.1 4e-13
gi|254774722|ref|ZP_05216238.1| ABC-2 type transporter [Mycobact... 77.4 2e-12
gi|256390584|ref|YP_003112148.1| ABC transporter [Catenulispora ... 77.0 3e-12
gi|331694714|ref|YP_004330953.1| ABC-2 type transporter [Pseudon... 77.0 3e-12
gi|336117303|ref|YP_004572070.1| multidrug ABC transporter perme... 77.0 3e-12
gi|312126428|ref|YP_003991302.1| abc-2 type transporter [Caldice... 76.6 4e-12
gi|254556771|ref|YP_003063188.1| ABC transporter, permease prote... 75.5 8e-12
gi|28378558|ref|NP_785450.1| ABC transporter, permease protein [... 75.5 9e-12
gi|343927763|ref|ZP_08767231.1| putative ABC transporter permeas... 75.1 1e-11
gi|284042588|ref|YP_003392928.1| ABC transporter [Conexibacter w... 74.3 2e-11
>gi|15610074|ref|NP_217453.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium tuberculosis H37Rv]
gi|15842483|ref|NP_337520.1| antibiotic resistance ABC transporter, efflux protein [Mycobacterium
tuberculosis CDC1551]
gi|31794114|ref|NP_856607.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=289
Score = 570 bits (1469), Expect = 1e-160, Method: Compositional matrix adjust.
Identities = 289/289 (100%), Positives = 289/289 (100%), Gaps = 0/289 (0%)
Query 1 MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFM 60
MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFM
Sbjct 1 MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFM 60
Query 61 VGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNR 120
VGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNR
Sbjct 61 VGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNR 120
Query 121 RFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIG 180
RFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIG
Sbjct 121 RFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIG 180
Query 181 AVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQF 240
AVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQF
Sbjct 181 AVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQF 240
Query 241 VAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARRP 289
VAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARRP
Sbjct 241 VAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARRP 289
>gi|339295776|gb|AEJ47887.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium tuberculosis CCDC5079]
gi|339299388|gb|AEJ51498.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium tuberculosis CCDC5180]
Length=258
Score = 508 bits (1309), Expect = 3e-142, Method: Compositional matrix adjust.
Identities = 258/258 (100%), Positives = 258/258 (100%), Gaps = 0/258 (0%)
Query 32 MWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYIT 91
MWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYIT
Sbjct 1 MWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYIT 60
Query 92 PLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVIS 151
PLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVIS
Sbjct 61 PLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVIS 120
Query 152 LVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIF 211
LVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIF
Sbjct 121 LVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIF 180
Query 212 GLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLF 271
GLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLF
Sbjct 181 GLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLF 240
Query 272 AFVVILALSSTIVLARRP 289
AFVVILALSSTIVLARRP
Sbjct 241 AFVVILALSSTIVLARRP 258
>gi|240169607|ref|ZP_04748266.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium kansasii ATCC 12478]
Length=288
Score = 379 bits (974), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 207/289 (72%), Positives = 233/289 (81%), Gaps = 3/289 (1%)
Query 1 MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRR-FAAPSLLNGEVLTTVGAPIIF 59
MS A +P F +++ ST Q VL R F S+ GE+ TT GAP++F
Sbjct 1 MSAAATVPTPTPAFEGFGPKVEKLNQSTLWQWRVLISRLFLRTSI--GELFTTAGAPVVF 58
Query 60 MVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVN 119
MVGFYIPFAIPWN FVGGASSGVASNLGQYITPLVTLQA+SFAAIGSGFRAATDSLLGVN
Sbjct 59 MVGFYIPFAIPWNHFVGGASSGVASNLGQYITPLVTLQAISFAAIGSGFRAATDSLLGVN 118
Query 120 RRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAI 179
RRF SMP+AP+TP+LAR V+V RC GL +SLVCGYVIGFRFHRGALYIVGFCLLV+AI
Sbjct 119 RRFSSMPIAPVTPVLARATVSVYRCSIGLAVSLVCGYVIGFRFHRGALYIVGFCLLVLAI 178
Query 180 GAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQ 239
GAVLSF DL+GTVT+NPDAMLPLL+LPILIFGLLS+GLMPL+LFP WIHPFVRNQPISQ
Sbjct 179 GAVLSFGTDLLGTVTKNPDAMLPLLTLPILIFGLLSVGLMPLRLFPRWIHPFVRNQPISQ 238
Query 240 FVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARR 288
FV A+RALAGDTTK V+WPVMAPTL WL F + L S +VL++R
Sbjct 239 FVEAMRALAGDTTKRVLPVTWPVMAPTLAWLVGFTLFLVPMSIVVLSKR 287
>gi|183981783|ref|YP_001850074.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium marinum M]
gi|183175109|gb|ACC40219.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium marinum M]
Length=289
Score = 375 bits (964), Expect = 4e-102, Method: Compositional matrix adjust.
Identities = 197/289 (69%), Positives = 231/289 (80%), Gaps = 0/289 (0%)
Query 1 MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFM 60
MS A+D +P TF + S + RLST +Q WVL RF P L + E++T VGAP++F
Sbjct 1 MSISAVDPTPVPTFKGAGPSAAKPRLSTLQQWWVLVGRFTKPRLRDPELITMVGAPVVFT 60
Query 61 VGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNR 120
VGFYIPFAIPWN +VGG +SGVAS+LGQYI PL+ LQ++SFAAI S FRAATDSL G+NR
Sbjct 61 VGFYIPFAIPWNHYVGGGASGVASSLGQYIAPLIVLQSISFAAISSAFRAATDSLQGINR 120
Query 121 RFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIG 180
RF+ MP+APLTP++ARV A+ RC GL ++L+CGY IGF F+RG LYIVG+CLL IAIG
Sbjct 121 RFRYMPIAPLTPVVARVTAAIYRCCVGLTVALICGYAIGFHFNRGPLYIVGYCLLAIAIG 180
Query 181 AVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQF 240
AVLSF ADL+GT T+NPDAMLPLLSLPILIFGLLS+GLMPLKLFPHWIHPFVRNQPI+QF
Sbjct 181 AVLSFGADLLGTGTKNPDAMLPLLSLPILIFGLLSVGLMPLKLFPHWIHPFVRNQPITQF 240
Query 241 VAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARRP 289
V ALRALAGDTTK A V+W VM PTL WL F + L S IVL+RRP
Sbjct 241 VVALRALAGDTTKAAIPVTWTVMTPTLAWLAGFALFLVPVSIIVLSRRP 289
>gi|118617591|ref|YP_905923.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium ulcerans Agy99]
gi|118569701|gb|ABL04452.1| daunorubicin-DIM-transport integral membrane protein ABC transporter
DrrB [Mycobacterium ulcerans Agy99]
Length=289
Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 196/289 (68%), Positives = 230/289 (80%), Gaps = 0/289 (0%)
Query 1 MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFM 60
MS A+D +P TF + S + RLST +Q WVL RF P L + E++T VGAP++F
Sbjct 1 MSISAVDPTPVPTFKGAGPSAAKPRLSTLQQWWVLVGRFTKPRLRDPELITMVGAPVVFT 60
Query 61 VGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNR 120
VGFYIPFAIPWN +VGG +SGV S+LGQYI PL+ LQ++SFAAI S FRAATDSL G+NR
Sbjct 61 VGFYIPFAIPWNHYVGGGASGVPSSLGQYIAPLIVLQSISFAAISSAFRAATDSLQGINR 120
Query 121 RFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIG 180
RF+ MP+APLTP++ARV A+ RC GL ++L+CGY IGF F+RG LYIVG+CLL IAIG
Sbjct 121 RFRYMPIAPLTPVVARVTAAIYRCCVGLTVALICGYAIGFHFNRGPLYIVGYCLLAIAIG 180
Query 181 AVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQF 240
AVLSF ADL+GT T+NPDAMLPLLSLPILIFGLLS+GLMPLKLFPHWIHPFVRNQPI+QF
Sbjct 181 AVLSFGADLLGTGTKNPDAMLPLLSLPILIFGLLSVGLMPLKLFPHWIHPFVRNQPITQF 240
Query 241 VAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARRP 289
V ALRALAGDTTK A V+W VM PTL WL F + L S IVL+RRP
Sbjct 241 VVALRALAGDTTKAAIPVTWTVMTPTLAWLAGFALFLVPVSIIVLSRRP 289
>gi|15828267|ref|NP_302530.1| antibiotic resistance membrane protein [Mycobacterium leprae
TN]
gi|221230744|ref|YP_002504160.1| putative antibiotic resistance membrane protein [Mycobacterium
leprae Br4923]
gi|467202|gb|AAA17359.1| drrB [Mycobacterium leprae]
gi|13093960|emb|CAC31867.1| probable antibiotic resistance membrane protein [Mycobacterium
leprae]
gi|219933851|emb|CAR72449.1| probable antibiotic resistance membrane protein [Mycobacterium
leprae Br4923]
Length=288
Score = 341 bits (874), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 184/289 (64%), Positives = 224/289 (78%), Gaps = 3/289 (1%)
Query 1 MSGPAIDASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAP-SLLNGEVLTTVGAPIIF 59
MS PA+ PA + S + + R ST RQ W L R+ L E +GAP++F
Sbjct 1 MSMPALAPIPASRW--PSTIMAKPRRSTLRQWWALTTRYYTDIKLFVFEKTIQIGAPVVF 58
Query 60 MVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVN 119
VG Y+PFAIPWN FVGG SSG+ASNLGQY+TPL+ LQ+++FAAIGS FRAATDSL G++
Sbjct 59 TVGLYLPFAIPWNHFVGGPSSGIASNLGQYVTPLIVLQSIAFAAIGSAFRAATDSLRGIS 118
Query 120 RRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAI 179
RRF++MP+AP+TP+LARV AV RC G+ ++L+CG+VIGF+FHRG LYIVGFC LV+AI
Sbjct 119 RRFRTMPIAPVTPVLARVTDAVQRCCWGMGVALICGHVIGFQFHRGPLYIVGFCALVLAI 178
Query 180 GAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQ 239
GA LSFAADL+GT RNPDAMLPLL+LPILIFGLLS+GLMP+KLFP WIHPFV NQP+SQ
Sbjct 179 GAALSFAADLLGTAIRNPDAMLPLLTLPILIFGLLSVGLMPVKLFPRWIHPFVLNQPVSQ 238
Query 240 FVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARR 288
FV ALRALAG+TTKT V+W VM PTL WLF F+V+L ++L RR
Sbjct 239 FVVALRALAGETTKTVIPVAWSVMVPTLAWLFGFLVVLVPICLVILFRR 287
>gi|108799796|ref|YP_639993.1| ABC transporter efflux protein DrrB [Mycobacterium sp. MCS]
gi|119868906|ref|YP_938858.1| multidrug ABC transporter inner membrane protein [Mycobacterium
sp. KMS]
gi|126435439|ref|YP_001071130.1| multidrug ABC transporter inner membrane protein [Mycobacterium
sp. JLS]
gi|108770215|gb|ABG08937.1| ABC transporter, DrrB efflux protein [Mycobacterium sp. MCS]
gi|119694995|gb|ABL92068.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
sp. KMS]
gi|126235239|gb|ABN98639.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
sp. JLS]
Length=269
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/258 (52%), Positives = 174/258 (68%), Gaps = 6/258 (2%)
Query 31 QMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYI 90
Q WVL R +P+L NGEV T + A ++F VG+YIP N +G S S+ Q++
Sbjct 17 QWWVLTNRLVSPTLRNGEVATALVASVVFTVGWYIPL----NNILGPRSG--MSSYAQFL 70
Query 91 TPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVI 150
PLV LQ +SFAAI RAATDS+ G+NRRF SMP+ TPL AR+ + RC G
Sbjct 71 MPLVALQGISFAAITGALRAATDSVKGINRRFDSMPIPAFTPLAARMSAGLYRCAVGTFA 130
Query 151 SLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILI 210
+LV G++IGFRFH G + V FC+L++AIG VLSF ADL+G+ ++NP+A L LP LI
Sbjct 131 ALVSGHIIGFRFHGGLVNAVLFCVLLLAIGLVLSFLADLLGSNSKNPEATSQWLMLPQLI 190
Query 211 FGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWL 270
FGL+S+G+ P + FP WI P VRNQPISQF+ ALRAL GDTT A +VSWPV+ P++ WL
Sbjct 191 FGLISVGIQPAENFPEWIQPIVRNQPISQFIYALRALGGDTTPGAGEVSWPVIGPSVAWL 250
Query 271 FAFVVILALSSTIVLARR 288
+VI+ S ++L RR
Sbjct 251 VGVMVIMVPVSVMLLRRR 268
>gi|120404100|ref|YP_953929.1| multidrug ABC transporter inner membrane protein [Mycobacterium
vanbaalenii PYR-1]
gi|119956918|gb|ABM13923.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
vanbaalenii PYR-1]
Length=274
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/264 (46%), Positives = 173/264 (66%), Gaps = 7/264 (2%)
Query 26 LSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASN 85
+S +Q WVL R P+L NGE+ T + I+F +G+Y+P Q +G S
Sbjct 15 VSAVQQWWVLTVRMITPTLRNGELATQIVGSIVFTIGYYLPL----KQMMGAVQP--LSG 68
Query 86 LGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCF 145
QY+TPL+ LQA+ FAAI + FR+ATDS+ G+NRRF++MP+ LTPL +R+ ++ RC
Sbjct 69 YAQYLTPLIVLQAIWFAAISAAFRSATDSVQGINRRFRAMPIPALTPLASRMTASMYRCV 128
Query 146 TGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLS 205
L++S+ CGYVIGFRF G L IVGF LV+ IGA L+ DL+G T+NP+A P++
Sbjct 129 VALIVSVACGYVIGFRFDNGVLGIVGFVALVLLIGAALALIGDLIGIATQNPEATAPMML 188
Query 206 LPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAP 265
+P L GL S+GL P++ FP WI FVRNQP+SQ+V L+ALAGD++ A + ++ V+ P
Sbjct 189 IPQLTLGLASVGLQPVERFPEWIQGFVRNQPLSQWVYGLQALAGDSSGNAPEATFAVLGP 248
Query 266 TLTWLFAFVVI-LALSSTIVLARR 288
L W+ +V+ LAL + + RR
Sbjct 249 GLAWVLGCIVVALALHTWVSRKRR 272
>gi|315444306|ref|YP_004077185.1| ABC-type multidrug transporter, permease component [Mycobacterium
sp. Spyr1]
gi|315262609|gb|ADT99350.1| ABC-type multidrug transport system, permease component [Mycobacterium
sp. Spyr1]
Length=282
Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/263 (47%), Positives = 170/263 (65%), Gaps = 7/263 (2%)
Query 26 LSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASN 85
+S +Q WVL R P+L NGE+ T V I+F VG+Y+P Q +G S+
Sbjct 24 VSAIQQWWVLTVRMIIPTLRNGELATQVVGSIVFTVGYYLPL----KQMMGAVQP--LSS 77
Query 86 LGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCF 145
QY+TPL+ LQA+ FAAI + FR+ATDS+ G+NRRF++MP+ TPL AR+ ++ RC
Sbjct 78 YAQYLTPLIMLQAIWFAAISAAFRSATDSVQGINRRFRAMPIPSSTPLAARMTASMYRCC 137
Query 146 TGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLS 205
L +S+ CGYVIGFRF G L I+GF LV+ IGA L+ DL+G T+NP+A P++
Sbjct 138 IALAVSVGCGYVIGFRFEAGVLGILGFVGLVLLIGAALAIIGDLIGVATQNPEATAPMML 197
Query 206 LPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAP 265
+P L GL S+GL P++ FP WI FVRNQP+SQ+V AL+ALAGD+T A + V+
Sbjct 198 IPQLTLGLASVGLQPVEQFPDWIQGFVRNQPLSQWVYALQALAGDSTDAAPDATVAVLGS 257
Query 266 TLTWLFAFVVILALSSTIVLARR 288
+ W A +++AL + ++RR
Sbjct 258 AVAWA-AGCIVVALVLHVWVSRR 279
>gi|145223974|ref|YP_001134652.1| ABC-2 type transporter [Mycobacterium gilvum PYR-GCK]
gi|145216460|gb|ABP45864.1| ABC-2 type transporter [Mycobacterium gilvum PYR-GCK]
Length=282
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/264 (46%), Positives = 170/264 (65%), Gaps = 7/264 (2%)
Query 25 RLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVAS 84
R+S +Q WVL R P+L NGE+ T V I+F VG+Y+P Q +G S
Sbjct 23 RVSAIQQWWVLTVRMIIPTLRNGELATQVVGSIVFTVGYYLPL----KQMMGAVQP--LS 76
Query 85 NLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRC 144
+ QY+TPL+ LQA+ FAAI + FR+ATDS+ G+NRRF++MP+ TPL AR+ ++ RC
Sbjct 77 SYAQYLTPLIVLQAIWFAAISAAFRSATDSVQGINRRFRAMPIPSSTPLAARMTASMYRC 136
Query 145 FTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLL 204
L +S+ CGYVIGFRF G L I+GF L + IGA L+ DL+G T+NP+A P++
Sbjct 137 CIALAVSVGCGYVIGFRFEAGVLGILGFVGLALLIGAALAIIGDLIGVATQNPEATAPMM 196
Query 205 SLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMA 264
+P L GL S+GL P++ FP WI FVRNQP+SQ+V AL+ALAGD+T A + V+
Sbjct 197 LIPQLTLGLASVGLQPVEQFPDWIQGFVRNQPLSQWVYALQALAGDSTDAAPDPTVAVLG 256
Query 265 PTLTWLFAFVVILALSSTIVLARR 288
+ W +V+ AL+ + ++RR
Sbjct 257 SAVAWAVGCIVV-ALTLHVWVSRR 279
>gi|54023074|ref|YP_117316.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
gi|54014582|dbj|BAD55952.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
Length=307
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/289 (46%), Positives = 171/289 (60%), Gaps = 10/289 (3%)
Query 4 PAIDA---SPALTFNQSSASIQQR-RLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIF 59
P IDA PA ++ + R R RQ WVL R PS+ GEVLT+V AP F
Sbjct 23 PVIDAVATEPATPAHRGAWLTDLRARPVRARQWWVLTTRLITPSVKTGEVLTSVFAPAAF 82
Query 60 MVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVN 119
FYIP + A +G S+ Q++ PLV LQA +F AIG+ FR+ATD++ G++
Sbjct 83 TASFYIPL----KTVMTFAGTGF-SSYAQFMMPLVILQAAAFTAIGAAFRSATDAVAGLD 137
Query 120 RRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAI 179
RRF SMP+ L P AR+ V R L +LVCG+VIGFRF AL+ +GF L +AI
Sbjct 138 RRFGSMPIGKLVPFGARMSGNVFRLAIALTAALVCGHVIGFRFRLDALHTLGFLALALAI 197
Query 180 GAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQ 239
G + AD++GT +++P+A L LP LI G+LS L P FP W+ PFVRNQPISQ
Sbjct 198 GIAFTVGADVIGTASKSPEATTQALVLPPLILGMLSTALAPATQFPQWVQPFVRNQPISQ 257
Query 240 FVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARR 288
F LRALAGDT A VSW ++ P+L WL A ++ LAL + A R
Sbjct 258 FAIGLRALAGDTAGNAGVVSWSLLGPSLLWL-AGILALALPLAVRFATR 305
>gi|54026083|ref|YP_120325.1| putative ABC transporter [Nocardia farcinica IFM 10152]
gi|54017591|dbj|BAD58961.1| putative ABC transporter [Nocardia farcinica IFM 10152]
Length=294
Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 107/262 (41%), Positives = 152/262 (59%), Gaps = 6/262 (2%)
Query 27 STGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNL 86
S Q W L R PSL NGEVLT V AP +F +GFY+P N + G+ S+
Sbjct 36 SAAAQWWTLTARLLRPSLRNGEVLTAVLAPTVFTLGFYVPM----NAVMAAYGHGL-SSY 90
Query 87 GQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFT 146
Q++ P++ +QAV+F A+ + RAA D+ G++ R +++P+ L P AR+ A+ R
Sbjct 91 AQFLLPMIVMQAVAFCAVSAAHRAAVDARAGLDERLRTLPLPRLVPPAARLAAALYRGGI 150
Query 147 GLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSL 206
+LVCG VIG RF GF LL +A+GAVLS ADL+G+++ P+A LL+L
Sbjct 151 AGAAALVCGGVIGARFFGPWWQTGGFLLLALAVGAVLSLGADLLGSLSAGPEATTQLLAL 210
Query 207 PILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPT 266
P LI GL+S GL P + FP W+ F +QP+S FV ALRALAGD T A + W + P
Sbjct 211 PQLILGLVSTGLAPAEHFPPWLAGFAAHQPVSAFVDALRALAGDATGAAGTIGWSTLGPA 270
Query 267 LTWLFAFVVILALSSTIVLARR 288
+ W+ + + + +ARR
Sbjct 271 VAWILGLGAVFG-AGAVFVARR 291
>gi|111023092|ref|YP_706064.1| multidrug ABC transporter transmembrane protein [Rhodococcus
jostii RHA1]
gi|110822622|gb|ABG97906.1| ABC drug resistance transporter, transmembrane protein [Rhodococcus
jostii RHA1]
Length=271
Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/273 (36%), Positives = 150/273 (55%), Gaps = 15/273 (5%)
Query 6 IDASPALTFNQSSASIQQRRLSTGRQMWV-LYRRFAAPSLLNGEVLTTVGAPIIFMVGFY 64
+ A L F ++ +R + Q W+ L +R ++G+ V AP+IF +GFY
Sbjct 1 MTAPAQLGFERALEGKHRRPQPSSIQQWIALSKRNLHTMAVSGQFFIAVLAPLIFTIGFY 60
Query 65 IPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQS 124
+P + +F G + Q++ P++ LQA++F AI + RAAT++ G+N RFQ+
Sbjct 61 LPLRLVM-KFQG-------IDYAQFVMPIIVLQAMAFTAISAAHRAATEASNGMNSRFQT 112
Query 125 MPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLS 184
MP+ P PL AR+ + LV S+ G +IGFRF G FC L +AIG L+
Sbjct 113 MPIGPAIPLAARMTASFIHSAISLVASIAYGLLIGFRFDGGVAQTAAFCGLAMAIGFTLT 172
Query 185 FAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAAL 244
AD +GT+TR+P+ L+LP LI G+ S G +P+ FP W FVRNQPISQF ++
Sbjct 173 TGADALGTLTRSPEITSQALTLPQLILGMFSSGFVPVTQFPEWAQGFVRNQPISQFSTSM 232
Query 245 RALAGDTTKTASQVSWPVMAPTLTWLFAFVVIL 277
RA+ T +++ ++ PTL W F ++
Sbjct 233 RAMTDGT------ITFQLLTPTLLWCAGFALVF 259
>gi|312140923|ref|YP_004008259.1| ABC transporter transmembrane protein [Rhodococcus equi 103S]
gi|325675439|ref|ZP_08155123.1| daunorubicin resistance ABC superfamily ATP binding cassette
transporter, permease protein [Rhodococcus equi ATCC 33707]
gi|311890262|emb|CBH49580.1| putative ABC-2 type transporter integral membrane subunit [Rhodococcus
equi 103S]
gi|325553410|gb|EGD23088.1| daunorubicin resistance ABC superfamily ATP binding cassette
transporter, permease protein [Rhodococcus equi ATCC 33707]
Length=287
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/272 (39%), Positives = 151/272 (56%), Gaps = 22/272 (8%)
Query 15 NQSSASIQQRRLSTGR-------QMWV-LYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIP 66
++S ++ +R+ + R Q W+ L R + GE+ V AP+IF VGFY+P
Sbjct 19 ERASVAVPAKRVGSHRRPDPNGFQQWLALTGRSLKTMVKTGELAVAVIAPLIFTVGFYLP 78
Query 67 FAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMP 126
+FV GV + Q++ P++ LQA++F AI + A+ +SLLG+ R ++MP
Sbjct 79 L-----RFVMKLQ-GV--DYAQFLMPIIVLQAMAFTAISASQVASVESLLGLTTRLKTMP 130
Query 127 MAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFA 186
+A PLL+R+ A+ R LV +L GY IGFRF GA FC L ++I LS
Sbjct 131 VAGPVPLLSRMTRALVRSVITLVAALAYGYAIGFRFSAGAAQAALFCALALSISVALSLG 190
Query 187 ADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRA 246
AD +GT+ ++P+A L+LP LI G+LS G +P FP WI PFVRNQPISQF A+R
Sbjct 191 ADAIGTLAKSPEATSQALALPQLILGMLSCGFVPETGFPEWIRPFVRNQPISQFSFAMRD 250
Query 247 LAGDTTKTASQVSWPVMAPTLTWLFAFVVILA 278
+A +S + P + W VV+ A
Sbjct 251 MAEGGVTASS------LFPAVAWCVGLVVVFA 276
>gi|54022694|ref|YP_116936.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
gi|54014202|dbj|BAD55572.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
Length=271
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/259 (36%), Positives = 144/259 (56%), Gaps = 22/259 (8%)
Query 19 ASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGA 78
+S Q R TGR +W + + GE++ P++F +GFY+P +F G
Sbjct 23 SSFAQWRALTGRVVWTMATK--------GELIVAFVTPLVFTLGFYLPLRYV-MKFQG-- 71
Query 79 SSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVW 138
+ Q++ P++ LQ ++F + + AA ++L G++ R Q+MP+ L P +R+
Sbjct 72 -----IDYAQFVMPIIVLQTMAFTMLSNAQLAAFEALTGLSTRLQTMPLGTLVPFTSRIC 126
Query 139 VAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPD 198
R T + +L+ G+ IGFRF G V FC+ +A+G VL+ AD +G++T++P+
Sbjct 127 AGFVRSLTSMAGALLFGHAIGFRFGAGFGQAVLFCVFSLAVGTVLAIGADGLGSLTKSPE 186
Query 199 AMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQV 258
+ L+LP LIFG+LS G +P + FP WI PFVRNQPISQF ALR +A D V
Sbjct 187 QLSQALTLPTLIFGMLSCGFVPERSFPEWIQPFVRNQPISQFSFALRDMAAD------GV 240
Query 259 SWPVMAPTLTWLFAFVVIL 277
+W V+ L WL ++
Sbjct 241 TWQVLWVPLVWLIGLALVF 259
>gi|226305332|ref|YP_002765290.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
gi|226184447|dbj|BAH32551.1| putative ABC transporter permease protein [Rhodococcus erythropolis
PR4]
Length=287
Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/249 (38%), Positives = 138/249 (56%), Gaps = 14/249 (5%)
Query 30 RQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQY 89
Q WVL R + E+L V AP+IF +GFY+P +FV G+ N Q+
Sbjct 42 NQWWVLTARTVKSMVKRYELLVAVIAPLIFTIGFYLPL-----KFVMQLQ-GI--NYAQF 93
Query 90 ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLV 149
+ P++ LQA++F +I + ++T+S+ G + R ++MP+ PLL+R R L
Sbjct 94 LMPIIVLQAMAFTSISAAQMSSTESITGFSNRMKTMPVVGPIPLLSRQSSGFVRSTVSLA 153
Query 150 ISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPIL 209
+L G++IGFRF G + FC + +A LSFA D +G+++++P A L+LP L
Sbjct 154 AALAFGHLIGFRFSAGIGQAILFCAVALAFSTCLSFAGDAIGSLSKSPQATSQALTLPQL 213
Query 210 IFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTW 269
I G+LS G P FP WI PFVRNQP+SQF A+R LA V+W V+ P + W
Sbjct 214 ILGMLSCGFAPETGFPEWIRPFVRNQPVSQFSFAMRDLA------QGGVTWSVLFPVVAW 267
Query 270 LFAFVVILA 278
+V+ A
Sbjct 268 TIGLIVVFA 276
>gi|229489591|ref|ZP_04383454.1| ABC drug resistance transporter, transmembrane protein [Rhodococcus
erythropolis SK121]
gi|229323688|gb|EEN89446.1| ABC drug resistance transporter, transmembrane protein [Rhodococcus
erythropolis SK121]
Length=287
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/249 (38%), Positives = 136/249 (55%), Gaps = 14/249 (5%)
Query 30 RQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQY 89
Q WVL R + E+L V AP+IF +GFY+P +FV G+ N Q+
Sbjct 42 NQWWVLTARTIKSMVKRYELLIAVIAPLIFTIGFYLPL-----KFVMQLQ-GI--NYAQF 93
Query 90 ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLV 149
+ P++ LQA++F +I + A+T+S+ G + R ++MP+ PLL+R R L
Sbjct 94 LMPIIVLQAMAFTSISAAQMASTESITGFSNRMKTMPVVGPVPLLSRQSSGFVRSTVALA 153
Query 150 ISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPIL 209
+L G++IGFRF G FC + +A LSFA D +G+++++P A L+LP L
Sbjct 154 AALTFGHLIGFRFSAGFAQAALFCAIALAFSTCLSFAGDAIGSLSKSPQATSQALTLPQL 213
Query 210 IFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTW 269
I G+LS G P FP WI PFVRNQP+SQF A+R LA V+W V+ P + W
Sbjct 214 ILGMLSCGFAPETGFPEWIRPFVRNQPVSQFSFAMRDLA------QGGVTWNVLFPVVAW 267
Query 270 LFAFVVILA 278
+ + A
Sbjct 268 TIGLIAVFA 276
>gi|226365591|ref|YP_002783374.1| ABC transporter permease protein [Rhodococcus opacus B4]
gi|226244081|dbj|BAH54429.1| putative ABC transporter permease protein [Rhodococcus opacus
B4]
Length=271
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/265 (37%), Positives = 145/265 (55%), Gaps = 15/265 (5%)
Query 6 IDASPALTFNQSSASIQQRRLSTGRQMWV-LYRRFAAPSLLNGEVLTTVGAPIIFMVGFY 64
+ A L F ++ +R + Q W+ L +R + G+ V AP+IF +GFY
Sbjct 1 MTAPAQLGFERTLEGKHRRPHPSSIQQWIALSQRNLHTMWVFGQFFIAVFAPLIFTLGFY 60
Query 65 IPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQS 124
+P + +F G + Q++ P++ LQA++F AI + RAAT++ G+N RFQ+
Sbjct 61 LPLRLVM-KFQG-------IDYAQFVMPIIVLQAMAFTAISAAHRAATEASNGMNSRFQT 112
Query 125 MPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLS 184
MP+ PL AR+ + LV ++ GY IGFRF G FC L + IG L+
Sbjct 113 MPVRAAVPLTARMTACLVHSTISLVAAIGYGYAIGFRFSGGLGLTAAFCGLAMLIGFTLT 172
Query 185 FAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAAL 244
AD +GT+TR+P+ L+LP LI G+ S G +P+ FP W FVRNQPISQF +++
Sbjct 173 TGADALGTLTRSPEVTSQALTLPQLILGMFSSGFVPVTQFPEWAQGFVRNQPISQFSSSM 232
Query 245 RALAGDTTKTASQVSWPVMAPTLTW 269
RA+ D T T Q++ PTL W
Sbjct 233 RAMT-DGTITFHQLT-----PTLLW 251
>gi|333918138|ref|YP_004491719.1| drug resistance ABC transporter ABC transmembrane protein [Amycolicicoccus
subflavus DQS3-9A1]
gi|333480359|gb|AEF38919.1| ABC drug resistance transporter, transmembrane protein [Amycolicicoccus
subflavus DQS3-9A1]
Length=276
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/282 (35%), Positives = 144/282 (52%), Gaps = 15/282 (5%)
Query 9 SPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFA 68
S +LT N++ +S R + RQ L R NG+ + + P IF + +Y+P
Sbjct 7 SLSLTANETLSS----RSTALRQWAALSTRSLREMARNGDFIIALITPAIFTLAYYVPLR 62
Query 69 --IPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMP 126
+ ++GG G N GQ++ PL+ AV+ + +AA D+ G+ R +MP
Sbjct 63 TMLELPTYMGG---GGVRNYGQFVVPLIAFGAVALTMQQAALKAARDAQQGMTARLYTMP 119
Query 127 MAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFA 186
+ PL +R+ R L ++ G++I FRF GAL F + V+ +G L
Sbjct 120 IPRAVPLFSRMTGHFARAVVALAAAIAYGHIINFRFEGGALNAAFFIVFVLFVGFSLILG 179
Query 187 ADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRA 246
AD +GT+T NP A+ L+LPILIFG++S GL+P FP + PFVRNQP+SQF +RA
Sbjct 180 ADALGTITANPRAVTQALTLPILIFGMMSTGLIPETGFPEFAQPFVRNQPVSQFAETMRA 239
Query 247 LAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVLARR 288
AG T +W + P L W A + L + ARR
Sbjct 240 FAGGT------ATWDTIGPGLVWSAALFIALGGLAMWAAARR 275
>gi|343927764|ref|ZP_08767232.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343762405|dbj|GAA14158.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=263
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/251 (38%), Positives = 139/251 (56%), Gaps = 21/251 (8%)
Query 23 QRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGV 82
+ R+ +Q W L+ R + GE + +P + + FY+P + + + GV
Sbjct 9 EPRVRPVQQWWTLFGRGINQVIRGGEAIFAFISPAMLAICFYLPL-----RSIVEVAPGV 63
Query 83 ASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVD 142
N GQ++ P++ LQ+V+FAA + RAA D + G+N RF+ MPM+PL P+LAR A +
Sbjct 64 --NYGQFLMPIILLQSVNFAASSAAMRAAFDGVQGINTRFRVMPMSPLVPMLART--ATN 119
Query 143 RCFTGLVISLVCGYV----IGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPD 198
L +SL C V I +R G + +G L +GA+ S+ AD +G V +P+
Sbjct 120 AVL--LTVSLSCAAVACLLIDWRPGGGVVGTIGLFGLAALVGALFSWVADGIGLVAGSPE 177
Query 199 AMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQV 258
A L+LP LI G++S G +PL FP WI PFVRNQPISQF A+RAL +
Sbjct 178 ATSQALALPTLILGMMSTGFVPLSQFPEWIQPFVRNQPISQFSDAMRAL------DSGAA 231
Query 259 SWPVMAPTLTW 269
+W ++ P+L W
Sbjct 232 TWSILQPSLWW 242
>gi|262203605|ref|YP_003274813.1| ABC transporter [Gordonia bronchialis DSM 43247]
gi|262086952|gb|ACY22920.1| ABC-2 type transporter [Gordonia bronchialis DSM 43247]
Length=263
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/252 (35%), Positives = 133/252 (53%), Gaps = 13/252 (5%)
Query 25 RLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVAS 84
+++ +Q W L R L +GEV+ + AP V FY+P NQ+ G
Sbjct 11 HITSRQQWWALTARGLGSLLRSGEVILALIAPAFLAVCFYLPLRSIMNQYPG-------M 63
Query 85 NLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRC 144
N Q++ P++TLQ++SF A + R++ D G+N RF++MPM P LAR+ ++
Sbjct 64 NYAQFLMPIITLQSISFVASSAAMRSSFDRAHGINTRFRTMPMHISIPALARISTSLVLL 123
Query 145 FTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLL 204
L + VIG+R G VG + +A+GA ++ AD +G + +P+A L
Sbjct 124 AIALCCATAVCLVIGWRPQGGVSGTVGLYAIAVAVGAAVALIADGIGLLASSPEATSQAL 183
Query 205 SLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMA 264
+LP+LI G+LS G +P FP WI PF RNQP+SQF A+RA + T T S V+
Sbjct 184 ALPVLILGMLSTGFVPESQFPDWIAPFARNQPVSQFANAMRAF-NENTATPS-----VIL 237
Query 265 PTLTWLFAFVVI 276
P + W V+
Sbjct 238 PAVWWFIGLFVL 249
>gi|343928125|ref|ZP_08767582.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343761979|dbj|GAA14508.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=284
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/258 (37%), Positives = 136/258 (53%), Gaps = 14/258 (5%)
Query 20 SIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGAS 79
S+ RR RQ + R + GE V P++F +GFY+P + A
Sbjct 26 SVVSRRWPFLRQWSTMTDRGVRSAWAEGEFAVAVVMPLVFALGFYLPLRLVM------AD 79
Query 80 SGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWV 139
G+ + Q++TP++ LQAV+F A+ + RA D L G+NRR SMP+ L PL +R+ V
Sbjct 80 RGI--DYAQFLTPIIVLQAVAFTAMAAAQRATLDKLRGMNRRLASMPVRALVPLASRMTV 137
Query 140 AVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDA 199
++ R + +LV G ++GF F G L + F +A+ VL+ AD +G + RNP+A
Sbjct 138 SLIRSVVSITAALVFGALLGFSFDGGILDTLAFVGFALAVAVVLAIGADSLGLIARNPEA 197
Query 200 MLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVS 259
LL LP L+ GLLS G +P FP W PF RNQPIS F A +R LA ++ +
Sbjct 198 TSQLLLLPQLVLGLLSTGFVPESGFPEWAQPFARNQPISHFAATMRELADGNPMMSTAL- 256
Query 260 WPVMAPTLTWLFAFVVIL 277
P L WL A V+
Sbjct 257 -----PALIWLGALAVVF 269
>gi|326385088|ref|ZP_08206758.1| ABC-2 type transporter [Gordonia neofelifaecis NRRL B-59395]
gi|326196173|gb|EGD53377.1| ABC-2 type transporter [Gordonia neofelifaecis NRRL B-59395]
Length=268
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/250 (34%), Positives = 130/250 (52%), Gaps = 14/250 (5%)
Query 31 QMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYI 90
Q+ L R + NGE++ +P V FY+P Q+ G N GQ++
Sbjct 22 QLAALSGRGLTKVIRNGELVFAFVSPAFLAVCFYLPLKNVMAQYPG-------MNYGQFL 74
Query 91 TPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVI 150
P++ LQ+V FAA + +A+ D G++ RF+ +PM P+++R+ L+
Sbjct 75 MPIIVLQSVGFAASSAAMKASFDGKDGIHTRFRVLPMPAWVPMISRLVTNSALLVVSLLC 134
Query 151 SLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILI 210
+LV +IG+R GAL + ++ IG +L+ AD +G + +P A +SLP LI
Sbjct 135 ALVACLIIGWRPENGALGVGLVFIVSFVIGILLALVADGIGLNSGSPQATSQAMSLPTLI 194
Query 211 FGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWL 270
G+LS G +P + FP WI PFVRNQPISQFV +R T ++W ++ P++ W
Sbjct 195 LGMLSTGFIPEESFPDWIQPFVRNQPISQFVNVIRGADQGT------LTWDLVQPSVYWC 248
Query 271 FA-FVVILAL 279
F V + L
Sbjct 249 IGLFAVAMGL 258
>gi|296164396|ref|ZP_06846971.1| DrrB protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900236|gb|EFG79667.1| DrrB protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=246
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/243 (31%), Positives = 121/243 (50%), Gaps = 15/243 (6%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ + +P ++ GF + G +G S QY P V Q++ F +
Sbjct 18 DGEMIFEILSPAAYLAGFSVALH-------GLVDTGPISYT-QYFLPAVVAQSMIFVGLL 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RAA D L G R +++P+A + P+ AR + R LV++L+ GY GFR G
Sbjct 70 TADRAARDHLSGFGERMRTLPVAAVAPVTARTVATLMRAALTLVVALIAGYAFGFRIDGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
Y F L+ + + ++ AD +G+ ++ L +P L+ +LS G+ P K FP
Sbjct 130 VGYATAFLLISLLLCLAVALGADALGSSAKSVQGAAHFLFVPQLLLFMLSTGIAPEKTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVL 285
W+ P+VRNQP+SQF LR LA + V +A TL W V++ + T+ +
Sbjct 190 AWLRPYVRNQPVSQFAETLRGLA------SGHVVLSNLAATLAWCLGMVLVFG-AITLRM 242
Query 286 ARR 288
RR
Sbjct 243 QRR 245
>gi|296141986|ref|YP_003649228.1| ABC-2 type transporter [Tsukamurella paurometabola DSM 20162]
gi|296030120|gb|ADG80889.1| ABC-2 type transporter [Tsukamurella paurometabola DSM 20162]
Length=259
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/256 (34%), Positives = 127/256 (50%), Gaps = 19/256 (7%)
Query 30 RQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQY 89
R VL R + G+++ + AP++F + FY P + + GG + QY
Sbjct 15 RATRVLAARGVRGGVREGDLVFAIAAPVLFFLCFYTPLHRSF-EAAGG-------DYAQY 66
Query 90 ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLV 149
+ P++TLQA F AI +G RA D R ++P+ + P LAR+ R +
Sbjct 67 LAPVITLQAGLFTAIVAGQRAGQDRATAATERLATLPVPRVAPTLARLLAIGARAAITIA 126
Query 150 ISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPIL 209
+ V GFR H G + VG+ LV+ + LS AD +G+VT P+ + LL LP +
Sbjct 127 TATAIAAVFGFRLH-GLVPAVGYFALVLVVTLALSALADALGSVTAAPERIGELLMLPQV 185
Query 210 IFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA-GDTTKTASQVSWPVMAPTLT 268
+ + S GL+P FP WI P VRNQP+S F ALR LA GD+ + L
Sbjct 186 VLVMASTGLVPAAAFPEWIQPVVRNQPVSVFADALRGLADGDSGDPTA---------ALI 236
Query 269 WLFAFVVILALSSTIV 284
W A VV+ AL+ +V
Sbjct 237 WAAALVVVGALACVLV 252
>gi|262200664|ref|YP_003271872.1| ABC transporter [Gordonia bronchialis DSM 43247]
gi|262084011|gb|ACY19979.1| ABC-2 type transporter [Gordonia bronchialis DSM 43247]
Length=270
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/260 (33%), Positives = 129/260 (50%), Gaps = 16/260 (6%)
Query 8 ASPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLL----NGEVLTTVGAPIIFMVGF 63
++ ALT +S A+ R T +WV AA L G V++ +G+PI F V F
Sbjct 2 STDALTDARSRATSPPR---TAVPLWVAVPELAARGLKAAAREGYVISAIGSPIAFFVCF 58
Query 64 YIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQ 123
Y+P +++ +GV + QY+ PL+ +QA F AI S A T + GV R
Sbjct 59 YVPLHARFDR------TGV--DYAQYLLPLIIMQAAIFVAIVSCEIAGTQAQSGVRDRLA 110
Query 124 SMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVL 183
S+P+ PL +R+ A+ R + + + + GF F GF + IA L
Sbjct 111 SLPIPRTAPLCSRMISALVRMAASIAAACLIAWAFGFGFRGSWWDTAGFVTIAIAFALAL 170
Query 184 SFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAA 243
S D + +V +PD++ +L LP L+ ++S GL+P + FP WI P VRN P+S F A
Sbjct 171 SLMTDALASVVDHPDSVAQMLMLPQLLLIMVSTGLVPAQQFPEWIQPVVRNSPVSVFADA 230
Query 244 LRALA-GDTTKTASQVSWPV 262
+R L+ G A + W V
Sbjct 231 MRELSVGADPDAAGVIGWAV 250
>gi|118466736|ref|YP_882433.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
avium 104]
gi|118168023|gb|ABK68920.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
avium 104]
Length=246
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/243 (31%), Positives = 122/243 (51%), Gaps = 15/243 (6%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ + +P ++ GF + G +G S QY+ P V Q++ F +
Sbjct 18 DGEMIFEILSPAAYLAGFSVALH-------GLIDTGRISY-SQYLLPAVVAQSMIFVGLM 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RAA D L G R +++P+ + ARV + R LV++LV GYV+GFR G
Sbjct 70 TADRAARDHLFGFGERIRTLPVPAAATVTARVTATLMRGSFCLVMALVAGYVLGFRLAGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
+Y F + + + ++ AD +G+ ++ LL +P L+ +LS G+ P + FP
Sbjct 130 LVYSAAFVFISLLLCLAVTLGADALGSSAKSVQGASHLLFVPQLLLFMLSTGIAPEQTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVL 285
W+ P+VRNQP+SQF LR LA V +A TL W V++ + T+ +
Sbjct 190 GWLRPYVRNQPVSQFAETLRGLA------RGHVIVGNVAATLAWCVGAVLVFG-AITLRM 242
Query 286 ARR 288
RR
Sbjct 243 QRR 245
>gi|254819603|ref|ZP_05224604.1| DrrB [Mycobacterium intracellulare ATCC 13950]
Length=246
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/243 (30%), Positives = 117/243 (49%), Gaps = 15/243 (6%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ + +P ++ GF + G +G S QY P V Q++ F +
Sbjct 18 DGEMIFEIISPAAYLAGFSVALH-------GLIDTGPVSYT-QYFLPAVVAQSMIFVGLL 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RAA D L G R +++P+ + AR + R L+++L+ GY GFR G
Sbjct 70 TADRAARDHLFGFGERMRTLPVPAAATVTARTVATLMRAVLSLLVALIAGYAFGFRITGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
Y F L+ + + ++ AD +G+ ++ L +P L+ +LS G+ P K FP
Sbjct 130 LGYAAAFLLISLLLCLAIALGADALGSSAKSVQGASHFLFVPQLLLFMLSTGIAPEKTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVL 285
W+ P+VRNQPISQF LR L + V +A TL W V++ + T+ +
Sbjct 190 EWLRPYVRNQPISQFAETLRGL------STGHVLLSNLAATLAWCLGMVLVFG-TITLRM 242
Query 286 ARR 288
RR
Sbjct 243 QRR 245
>gi|41407335|ref|NP_960171.1| DrrB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|5524335|gb|AAD44228.1|AF143772_34 DrrB [Mycobacterium avium]
gi|41395687|gb|AAS03554.1| DrrB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457971|gb|EGO36959.1| ABC-type multidrug transport system, permease component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=246
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/243 (31%), Positives = 120/243 (50%), Gaps = 15/243 (6%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ + +P ++ GF + G +G S QY+ P V +Q++ +
Sbjct 18 DGEMIFEIVSPAAYLAGFTVALH-------GLIDTGRISY-SQYLLPAVVVQSMIVVGLL 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RAA D L G R +++P+A + ARV + R LV+++V GY GFR G
Sbjct 70 TADRAARDHLFGFGERMRTLPIAAAATVTARVAATLMRALLSLVVAMVAGYAFGFRITGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
Y + F + + + ++ AD VG+ ++ LL +P L+ +LS GL P + FP
Sbjct 130 LGYAMAFLFIALLLCLAVTLGADAVGSRAKSVQGASHLLFVPQLLLFMLSTGLAPEQTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVL 285
W+ PFVRNQP+SQF LR LA A +V L W V++ + T+ +
Sbjct 190 AWLQPFVRNQPVSQFAETLRGLA------AGRVVLSNATAALAWCAGMVLVFG-AITLRM 242
Query 286 ARR 288
RR
Sbjct 243 QRR 245
>gi|254775700|ref|ZP_05217216.1| DrrB [Mycobacterium avium subsp. avium ATCC 25291]
Length=246
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/243 (31%), Positives = 120/243 (50%), Gaps = 15/243 (6%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ + +P ++ GF + G +G S QY+ P V +Q++ +
Sbjct 18 DGEMIFEIVSPAAYLAGFTVALH-------GLIDTGRISY-SQYLLPAVVVQSMIVLGLL 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RAA D L G R +++P+A + ARV + R LV+++V GY GFR G
Sbjct 70 TADRAARDHLFGFGERMRTLPIAAAATVTARVAATLMRALLSLVVAMVAGYAFGFRITGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
Y + F + + + ++ AD VG+ ++ LL +P L+ +LS GL P + FP
Sbjct 130 LGYAMAFLFIALLLCLAVTLGADAVGSRAKSVQGASHLLFVPQLLLFMLSTGLAPEQTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVL 285
W+ PFVRNQP+SQF LR LA A +V L W V++ + T+ +
Sbjct 190 AWLQPFVRNQPVSQFAETLRGLA------AGRVVLSNATAALAWCAGMVLVFG-AITLRM 242
Query 286 ARR 288
RR
Sbjct 243 QRR 245
>gi|4416481|gb|AAD20381.1| daunorubicin resistance protein B [Mycobacterium avium]
Length=246
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/243 (31%), Positives = 120/243 (50%), Gaps = 15/243 (6%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ + +P ++ GF + G +G S QY+ P V +Q++ +
Sbjct 18 DGEMIFEIVSPAAYLAGFTVALH-------GLIDTGRISY-SQYLLPAVVVQSMIVLGLL 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RAA D L G R +++P+A + ARV + R LV+++V GY GFR G
Sbjct 70 TADRAARDHLFGFGERMRTLPIAAAATVTARVAATLMRALLSLVVAMVAGYAFGFRITGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
Y + F + + + ++ AD VG+ ++ LL +P L+ +LS GL P + FP
Sbjct 130 LGYAMAFLFIALLLCLAVTLGADAVGSRAKSVQGASHLLFVPQLLLFMLSTGLAPEQTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILALSSTIVL 285
W+ PFVRNQP+SQF LR LA A +V L W V++ + T+ +
Sbjct 190 AWLQPFVRNQPVSQFAETLRGLA------AGRVVLNNATAALAWCAGMVLVFG-AITLRM 242
Query 286 ARR 288
RR
Sbjct 243 QRR 245
>gi|342858819|ref|ZP_08715474.1| DrrB [Mycobacterium colombiense CECT 3035]
gi|342134523|gb|EGT87703.1| DrrB [Mycobacterium colombiense CECT 3035]
Length=246
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/203 (31%), Positives = 105/203 (52%), Gaps = 8/203 (3%)
Query 46 NGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIG 105
+GE++ V AP +++ GF + G +G S QY+ P V +Q+++F +
Sbjct 18 DGEMIFEVFAPAVYLAGFSVALH-------GLIDTGPVS-YSQYLLPAVVVQSMTFVGML 69
Query 106 SGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRG 165
+ RA D + G R +++P+ + AR + R L+++++ G+V GFR G
Sbjct 70 TADRAVRDHIFGFGERIRTLPVPAAATVTARTAATLLRGVLSLIVAMIAGFVFGFRMTGG 129
Query 166 ALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFP 225
+ F ++ + + ++ AD +G+ + LL +P L+ +LS G+ P K FP
Sbjct 130 PGNAIAFVVVALLLCLAVTLGADALGSSAKTVQGASHLLFVPQLLMFMLSTGIAPEKTFP 189
Query 226 HWIHPFVRNQPISQFVAALRALA 248
W+ P+VRNQP SQF LR LA
Sbjct 190 EWLRPYVRNQPFSQFAETLRGLA 212
>gi|336458157|gb|EGO37140.1| ABC-type multidrug transport system, permease component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=548
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/192 (34%), Positives = 97/192 (51%), Gaps = 6/192 (3%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P+V +QA+ F A+ + RAA D L G R +++P+ PL AR+ + R
Sbjct 52 QYVLPVVIVQAMLFGAMTTADRAARDRLSGFGSRLRTLPLPASVPLGARMLYCLTRALIA 111
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
L ++ G+ GFR G V F +V+ + AD +G+ ++ LL LP
Sbjct 112 LTATMAAGWSFGFRMQGGPADAVLFVTIVVVFAMAVCLGADALGSRVGTVESSSQLLLLP 171
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTL 267
L+ LLS G+ P + FP W+ PF+RNQP+SQ ALR LA V+ +A L
Sbjct 172 QLVLVLLSTGIAPAESFPAWLAPFIRNQPVSQVTEALRGLA------TGHVAGSSLAAAL 225
Query 268 TWLFAFVVILAL 279
TW + + +
Sbjct 226 TWCLGLLAVFGV 237
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/161 (29%), Positives = 76/161 (48%), Gaps = 5/161 (3%)
Query 90 ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLV 149
+ P+ + F IG+G ++ GV R P+ +P+ R+ R
Sbjct 352 LVPMCAVVGAVFGTIGAGLALPSERESGVLTRLWVQPVHRASPVAGRLVAEAARTVASAF 411
Query 150 ISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPD--AMLPLLSLP 207
+ V G +G RF+ G + ++ F L+ + I A + A LV + D AM+ L
Sbjct 412 VLTVFGIALGLRFNDGWIAMLAFVLVPVTISAGM---ATLVTAIAARADGKAMVTWLGAA 468
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
++ L+ G+ P ++FP W+ P VR PIS + A+RALA
Sbjct 469 CVVLLFLNTGVAPAEVFPGWLQPVVRYSPISPTIEAMRALA 509
>gi|118465128|ref|YP_881223.1| ABC transporter [Mycobacterium avium 104]
gi|118166415|gb|ABK67312.1| ABC-2 type transporter [Mycobacterium avium 104]
Length=548
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/192 (34%), Positives = 97/192 (51%), Gaps = 6/192 (3%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P+V +QA+ F A+ + RAA D L G R +++P+ PL AR+ + R
Sbjct 52 QYVLPVVIVQAMLFGAMTTADRAARDRLSGFGSRLRTLPLPASVPLGARMLYCLTRALIA 111
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
L ++ G+ GFR G V F +V+ + AD +G+ ++ LL LP
Sbjct 112 LAATMAAGWSFGFRMQGGPADAVLFVTIVVVFAMAVCLGADALGSRVGTVESSSQLLLLP 171
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTL 267
L+ LLS G+ P + FP W+ PF+RNQP+SQ ALR LA V+ +A L
Sbjct 172 QLVLVLLSTGIAPAESFPAWMAPFIRNQPVSQVTEALRGLA------TGHVAGGSLAAAL 225
Query 268 TWLFAFVVILAL 279
TW + + +
Sbjct 226 TWCLGLLAVFGV 237
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (29%), Positives = 76/161 (48%), Gaps = 5/161 (3%)
Query 90 ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLV 149
+ P+ + F IG+G ++ GV R P+ +P+ R+ R
Sbjct 352 LVPMCAVVGAVFGTIGAGLALPSERESGVLTRLWVQPVHRASPVAGRLVAEAARTVASAF 411
Query 150 ISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPD--AMLPLLSLP 207
+ V G +G RF+ G + ++ F L+ + I A + A LV + D AM+ L
Sbjct 412 VLTVFGIALGLRFNDGWIAMLAFVLVPVTISAGM---ATLVTAIAARADGKAMVTWLGAG 468
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
++ L+ G+ P ++FP W+ P VR PIS + A+RALA
Sbjct 469 CVVLLFLNTGVAPAEVFPGWLQPVVRYSPISPTIEAMRALA 509
>gi|108800072|ref|YP_640269.1| ABC-2 type transporter [Mycobacterium sp. MCS]
gi|108770491|gb|ABG09213.1| ABC-2 type transporter [Mycobacterium sp. MCS]
Length=229
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/202 (32%), Positives = 104/202 (52%), Gaps = 6/202 (2%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P V +QA+ F A+ + RAA D++ G++ R +++P++P L AR+ + R
Sbjct 34 QYVLPAVVVQAMLFGALTTTDRAAWDTISGLSTRMRTLPISPYAMLTARMIYCLIRGVLA 93
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
++ S++ + GFRF G Y F L+ + + LS AD+ GT + LL +P
Sbjct 94 VIASVLAAHWFGFRFTTGFGYGAAFVLMALTLTLALSLGADVTGTKAGRTEVASQLLLVP 153
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTL 267
L+ LLS GL PL+ FP W+ FV+ QP+SQ A+R T+ V + +L
Sbjct 154 QLLLVLLSTGLAPLEAFPSWLQGFVQYQPVSQITEAMRGF------TSGHVDAGNLGVSL 207
Query 268 TWLFAFVVILALSSTIVLARRP 289
W +++ + + R P
Sbjct 208 AWCVGLLLVFGTMAVRLQGRTP 229
>gi|119869198|ref|YP_939150.1| ABC-2 type transporter [Mycobacterium sp. KMS]
gi|119695287|gb|ABL92360.1| ABC-2 type transporter [Mycobacterium sp. KMS]
Length=245
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/202 (32%), Positives = 104/202 (52%), Gaps = 6/202 (2%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P V +QA+ F A+ + RAA D++ G++ R +++P++P L AR+ + R
Sbjct 50 QYVLPAVVVQAMLFGALTTTDRAAWDTISGLSTRMRTLPISPYAMLTARMIYCLIRGVLA 109
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
++ S++ + GFRF G Y F L+ + + LS AD+ GT + LL +P
Sbjct 110 VIASVLAAHWFGFRFTTGFGYGAAFVLMALTLTLALSLGADVTGTKAGRTEVASQLLLVP 169
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTL 267
L+ LLS GL PL+ FP W+ FV+ QP+SQ A+R T+ V + +L
Sbjct 170 QLLLVLLSTGLAPLEAFPSWLQGFVQYQPVSQITEAMRGF------TSGHVDAGNLGVSL 223
Query 268 TWLFAFVVILALSSTIVLARRP 289
W +++ + + R P
Sbjct 224 AWCVGLLLVFGTMAVRLQGRTP 245
>gi|342857523|ref|ZP_08714179.1| ABC transporter [Mycobacterium colombiense CECT 3035]
gi|342134856|gb|EGT88022.1| ABC transporter [Mycobacterium colombiense CECT 3035]
Length=548
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/161 (37%), Positives = 91/161 (57%), Gaps = 0/161 (0%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P+V +QA+ F A+ + RAA D L G R +++P++ PL AR+ + R
Sbjct 52 QYVVPVVIVQAMLFGAMTTADRAARDRLSGFGSRLRTLPVSAAVPLGARMLYCLTRAIVA 111
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
LV ++ G++ FR G V F ++V+A + AD +G+ + ++ LL LP
Sbjct 112 LVAAIAVGWLFDFRMEGGPGDTVLFVIIVVAFAMAVCLGADALGSRAGSVESSSQLLLLP 171
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
L+ LLS G+ P + FP W+ PF+RNQP+SQ LR LA
Sbjct 172 QLVLVLLSTGIAPAESFPTWLGPFIRNQPVSQVTETLRGLA 212
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/173 (29%), Positives = 83/173 (48%), Gaps = 7/173 (4%)
Query 78 ASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARV 137
A++G S G + P+ + F +G+G ++ GV R P+ + + R+
Sbjct 342 ATTGHDSLYG--LVPMCAVVGAVFGTLGAGLALPSEREAGVLTRLWVQPVHRASTVAGRL 399
Query 138 WVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNP 197
R ++ G +G RF+ G + ++GF L+ +AI A + A LV V
Sbjct 400 VAEAARTIMSALVLTAFGIALGLRFNYGWIAMLGFILMPVAISAGM---ATLVIAVAARA 456
Query 198 D--AMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
D AM+ L ++ L+ G+ P ++FP W+ P VR PIS + A+RALA
Sbjct 457 DGKAMVTWLGAGCVVLLFLNTGVAPAEVFPGWLQPVVRFSPISPTIEAMRALA 509
>gi|117927549|ref|YP_872100.1| ABC-2 type transporter [Acidothermus cellulolyticus 11B]
gi|117648012|gb|ABK52114.1| ABC-2 type transporter [Acidothermus cellulolyticus 11B]
Length=273
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/227 (27%), Positives = 103/227 (46%), Gaps = 8/227 (3%)
Query 52 TVGAPIIFMVGFYIPFAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAA 111
TV P++F + F F G S+G + Y+ P + Q +FA+IG+
Sbjct 44 TVVQPVMFTLLFRYVFG-------GAISTGGRGSYVDYLMPGIIGQTAAFASIGTAIALG 96
Query 112 TDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVG 171
++ G+ RF+SMPMA L R+ R +++ L GY++GFRFH G +G
Sbjct 97 NEAGKGIIDRFRSMPMARSAVLAGRLAADTLRMLFTILVILGVGYLVGFRFHNGVAGAIG 156
Query 172 FCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPF 231
LL G + + +G ++ +++ + + +S +P+ P W+ F
Sbjct 157 MVLLAGFFGLTICAVSAYIGLAIKDEESIQAFGLIWLFPLTFVSSAFVPINSMPGWLQAF 216
Query 232 VRNQPISQFVAALRALAGDTTKTASQVSWPVMAPTLTWLFAFVVILA 278
NQP++ + LR LA T AS + P + +L WL + +
Sbjct 217 ANNQPVTIVINTLRYLALGPTPGASALQ-PHLWQSLAWLVGILAVFG 262
>gi|254821611|ref|ZP_05226612.1| ABC-2 type transporter [Mycobacterium intracellulare ATCC 13950]
Length=548
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/161 (37%), Positives = 88/161 (55%), Gaps = 0/161 (0%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P+V +QA+ F A+ + RAA D L G R +++P+ PL AR+ + R
Sbjct 52 QYVLPVVIVQAMLFGAMTTADRAARDRLSGFGSRLKTLPVPAAVPLAARMLYCLIRSVIA 111
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
LV ++ G+ GFR G F ++V+A + AD +G+ + ++ LL LP
Sbjct 112 LVAAIAVGWSFGFRMAGGVGDTSLFVIIVVAFAMAVCLGADALGSRVGSVESSSQLLLLP 171
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
L+ LLS G+ P + FP W+ PFVR QP+S+ LR LA
Sbjct 172 QLVLVLLSTGIAPAESFPAWLGPFVRQQPVSRVTDTLRGLA 212
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (28%), Positives = 81/183 (45%), Gaps = 6/183 (3%)
Query 69 IPWNQFVGGASSGVASNLGQY-ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPM 127
I + +G A V + Y + P+ + F +G+G + GV R P+
Sbjct 330 IVYKLLIGKAVLAVTGHDSLYGLVPMCAVVGAVFGTLGAGLALPAERESGVLTRLWVQPV 389
Query 128 APLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAA 187
+ + R+ R V+ + G +G RF G + + F L+ +AI A + A
Sbjct 390 HRASTVAGRLVAEAARTTASAVVLTIFGIALGLRFSYGWIAALAFVLVPVAISAGM---A 446
Query 188 DLVGTVTRNPD--AMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALR 245
LV + D AM+ L ++ L+ G+ P +FP W+ P VR PIS + A+R
Sbjct 447 TLVIAIAARADGKAMVTWLGAGCVLLLFLNTGVAPAGVFPGWLQPVVRFSPISPTIEAMR 506
Query 246 ALA 248
ALA
Sbjct 507 ALA 509
>gi|297560715|ref|YP_003679689.1| ABC transporter [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296845163|gb|ADH67183.1| ABC-2 type transporter [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=264
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/185 (31%), Positives = 91/185 (50%), Gaps = 6/185 (3%)
Query 85 NLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRC 144
+ Q++ P + +Q + A + A D G+ R++SMP+ L+ R
Sbjct 66 DYAQFLPPAIIVQWMFSVANSAAPMLAADRRDGLIARYRSMPVNRGALLVGRFLADTVWA 125
Query 145 FTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLL 204
+ + L+CG+V GFRF G +GF L + G VL+ VG +R+P+++ +L
Sbjct 126 LVSVAVILLCGFVAGFRFGGGVPAALGFVALAVLFGLVLTAGTSAVGLASRDPESVSAVL 185
Query 205 SLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTASQVSWPVMA 264
+L L +LS +P + FP W+ P + P+S + ALRALA T V+ V A
Sbjct 186 NLVYLPLLMLSTAFVPAEAFPGWLEPVIAASPVSVVIDALRALA-----TGEGVAGAV-A 239
Query 265 PTLTW 269
P L W
Sbjct 240 PALVW 244
>gi|254422505|ref|ZP_05036223.1| ABC-2 type transporter superfamily [Synechococcus sp. PCC 7335]
gi|196189994|gb|EDX84958.1| ABC-2 type transporter superfamily [Synechococcus sp. PCC 7335]
Length=275
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/242 (29%), Positives = 110/242 (46%), Gaps = 20/242 (8%)
Query 21 IQQRRLSTGRQM----WVLYRRFAAPSLLNGEVLTTVGA-PIIFMVGFYIPFAIPWNQFV 75
I QR S R+ W++ RR N V+ + P +F+ GF+I +
Sbjct 15 IAQRHESGWRRAITDSWLITRRNLIRLKRNPIVIVAIAIFPTVFLAGFWI---------I 65
Query 76 GG---ASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTP 132
G A G+ + QY+ P++ +Q + FA +GS A D G+ R + MP++ +
Sbjct 66 GQKLMARQGI--DYIQYLVPIINIQVLFFAGLGSSIMLAKDIETGMMNRCRVMPISRVAV 123
Query 133 LLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGT 192
+ V + R +I + Y GFRF+ +G+ L++ A ++
Sbjct 124 VAGLVMAYMVRAILATIILFLVAYGFGFRFYGSLFAWIGYFTLIVTFTATCITGYSILAL 183
Query 193 VTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRAL-AGDT 251
R P + + +P LLS G P + FP W+ PFVR QP+S ALRAL +G++
Sbjct 184 KLREPTLVDAVSIIPYTPLLLLSNGFSPTENFPSWLQPFVRYQPVSITGDALRALSSGES 243
Query 252 TK 253
T
Sbjct 244 TS 245
>gi|254774722|ref|ZP_05216238.1| ABC-2 type transporter [Mycobacterium avium subsp. avium ATCC
25291]
Length=548
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/161 (37%), Positives = 89/161 (56%), Gaps = 0/161 (0%)
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
QY+ P+V +QA+ F A+ + RAA D L G R +++P+ PL AR+ + R
Sbjct 52 QYVLPVVIVQAMLFGAMTTADRAARDRLSGFGSRLKTLPVPAAVPLAARMLYCLIRSVVA 111
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
LV ++ G+ GFR G F ++V+A + AD +G+ + ++ LL LP
Sbjct 112 LVAAVAVGWSFGFRMAGGPGDTGLFVIIVVAFAMAVCLGADALGSRVGSVESSSQLLLLP 171
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
L+ LLS G+ P + FP W+ PFVR+QP+S+ LR LA
Sbjct 172 QLVLVLLSTGIAPAESFPAWLGPFVRHQPVSRVTDTLRGLA 212
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (28%), Positives = 81/183 (45%), Gaps = 6/183 (3%)
Query 69 IPWNQFVGGASSGVASNLGQY-ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPM 127
I + +G A V + Y + P+ + F +G+G + GV R P+
Sbjct 330 IVYKLLIGKAVLAVTGHDSLYGLVPMCAVVGAVFGTLGAGLALPAERESGVLTRLWVQPV 389
Query 128 APLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAA 187
+ + R+ R V+ + G +G RF G + + F L+ +AI A + A
Sbjct 390 HRASTVAGRLVAEAARTTASAVVLTIFGVALGLRFSYGWIAALAFVLVPVAISAGM---A 446
Query 188 DLVGTVTRNPD--AMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALR 245
LV + D AM+ L ++ L+ G+ P +FP W+ P VR PIS + A+R
Sbjct 447 TLVIAIAARADGKAMVTWLGAGCVLLLFLNTGVAPAGVFPGWLQPVVRFSPISPTIEAMR 506
Query 246 ALA 248
ALA
Sbjct 507 ALA 509
>gi|256390584|ref|YP_003112148.1| ABC transporter [Catenulispora acidiphila DSM 44928]
gi|256356810|gb|ACU70307.1| ABC-2 type transporter [Catenulispora acidiphila DSM 44928]
Length=269
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/225 (29%), Positives = 97/225 (44%), Gaps = 9/225 (4%)
Query 24 RRLSTGRQMWVLYRRFAAPSLLNGEVLTTVG-APIIFMVGFYIPFAIPWNQFVGGASSGV 82
+ T R L +R ++ E L V P+IF++ F F GGA +G
Sbjct 17 KPFKTIRHSAALAKRSLIKTMRTPEALLDVTLQPVIFLLLFTYVF--------GGAIAGS 68
Query 83 ASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVD 142
S QY+ P + Q ++ +A G TD GV RF+S+P+A PL+ V
Sbjct 69 QSVYLQYLLPGILAQTIAMSATAIGVNMNTDISKGVFDRFRSLPIARSAPLVGAVLADFV 128
Query 143 RCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLP 202
R VI+L GY +GFR H L L+ +A LS+ + +G + R P A+
Sbjct 129 RYALVAVITLTVGYAMGFRIHTNPLEAGAALLVSVAFALALSWVSVFLGMLARTPGAVQG 188
Query 203 LLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRAL 247
++ L +L S + P W+ FV PI+ R L
Sbjct 189 MMILLVLPLSFGSNTFVQTNTLPGWMQAFVNVNPITHLAGVSRGL 233
>gi|331694714|ref|YP_004330953.1| ABC-2 type transporter [Pseudonocardia dioxanivorans CB1190]
gi|326949403|gb|AEA23100.1| ABC-2 type transporter [Pseudonocardia dioxanivorans CB1190]
Length=291
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/226 (29%), Positives = 105/226 (47%), Gaps = 9/226 (3%)
Query 23 QRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVG-APIIFMVGFYIPFAIPWNQFVGGASSG 81
+R ST R L R ++ + E L V P+IF++ F F GGA +G
Sbjct 38 RRGPSTIRHGLTLAWRGVIKTIHSPEALIDVTLQPVIFLLLFVYVF--------GGAIAG 89
Query 82 VASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAV 141
+ Q+ P V +Q V A+ G+G A D G+ RF+S+P++ PL+ + +
Sbjct 90 NTTEYLQFALPGVLVQTVVLASAGTGVGLAEDLHTGIFDRFRSLPISRSAPLVGAIMADL 149
Query 142 DRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAML 201
R T VI LV G ++GFR H G L ++ LV+ L + + + R P ++
Sbjct 150 VRYLTSGVIMLVLGVILGFRMHTGPLAVLAAMGLVMVFAFALCWVFTALAMLVRQPRSVQ 209
Query 202 PLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRAL 247
+ ++ +L S +P P W+ FV P+S+ A+R L
Sbjct 210 GIGAMIMLPLTFGSNVFVPSSSMPGWLQAFVDVNPVSKVADAVRGL 255
>gi|336117303|ref|YP_004572070.1| multidrug ABC transporter permease [Microlunatus phosphovorus
NM-1]
gi|334685082|dbj|BAK34667.1| multidrug ABC transporter permease protein [Microlunatus phosphovorus
NM-1]
Length=279
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/271 (27%), Positives = 120/271 (45%), Gaps = 18/271 (6%)
Query 9 SPALTFNQSSASIQQRRLSTGRQMWVLYRRFAAPSLLNGEVLTTVG-APIIFMVGF-YIP 66
+PA + S+ ++ +S R ++V+ +R + E L V P+IF+ F YI
Sbjct 11 NPAPRLSVSTPPTERTPVSYLRHVFVVAQRSLIKTWRTPEALIDVTLQPVIFLALFTYI- 69
Query 67 FAIPWNQFVGGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMP 126
F G + G + Q++ P + Q ++ A I G TD G+ RF+S+P
Sbjct 70 -------FGGAIAGGSQHDYLQFLLPGILGQTIAMAGIALGTNLNTDIEKGIFDRFRSLP 122
Query 127 MAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFA 186
+ PL+ V V R T V+++ G+ +GFR G +V L I +
Sbjct 123 IGRSVPLVGAVVADVARYLTLCVVTMGAGFAMGFRVQTGPTQVVAAMALCIGFALCFCWI 182
Query 187 ADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRA 246
+ +G + R A+ + L +L S +P + P W+ FV PIS V+ +R
Sbjct 183 SVFIGMIARTSGAVQGIGFLIVLPLSFGSNTFVPTETMPGWLQAFVNVNPISHLVSTVRT 242
Query 247 LA-GDTTKTASQVSWPVMAPTLTWLFAFVVI 276
L G + T ++W TL W+ +V+
Sbjct 243 LMLGGSYGT--DLAW-----TLGWMAVLLVV 266
>gi|312126428|ref|YP_003991302.1| abc-2 type transporter [Caldicellulosiruptor hydrothermalis 108]
gi|311776447|gb|ADQ05933.1| ABC-2 type transporter [Caldicellulosiruptor hydrothermalis 108]
Length=267
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/177 (30%), Positives = 88/177 (50%), Gaps = 6/177 (3%)
Query 76 GGASSGVASNLGQY---ITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTP 132
GGA +A N+ +Y I P + +Q + A+I SG + D GV RF+S+P+A + P
Sbjct 60 GGA---IAGNVHKYLPTIVPAILVQTLFSASIISGTQLREDMDTGVFDRFKSLPIAQIAP 116
Query 133 LLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGT 192
L + + R ++ + + GY+IG+R G +++ L VI +S+ VG
Sbjct 117 LAGPLLADILRYVVAMLSTFITGYIIGYRPAGGVGHLIIAALFVIGFSWSISWVFAFVGV 176
Query 193 VTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAG 249
V R ++ + L + LS +P++ PH + F +N PIS + A+R L
Sbjct 177 VARTASSVQAISMLVMFPLMFLSNAFVPVETMPHAVQWFAKNNPISHIITAVRELTN 233
>gi|254556771|ref|YP_003063188.1| ABC transporter, permease protein [Lactobacillus plantarum JDM1]
gi|254045698|gb|ACT62491.1| ABC transporter, permease protein [Lactobacillus plantarum JDM1]
Length=256
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/186 (31%), Positives = 98/186 (53%), Gaps = 6/186 (3%)
Query 65 IPFAIPWNQFVGGASSGVASNLGQYITPLVT---LQAVSFAAIGSGFRAATDSLLGVNRR 121
I F + + GGA +A ++ Y+ LVT +Q++ AA GSG + D GV R
Sbjct 38 IIFTLLFGYLFGGA---IAGSVQAYLPMLVTGILIQSILNAASGSGQQLREDINAGVFDR 94
Query 122 FQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGA 181
F+++P++P+ PL ++ V R +++LV +++G+R L ++G LL + +G
Sbjct 95 FKTLPISPIVPLAGQLVGDVFRLLISGLMALVTAFMMGWRPIVSPLVLIGVLLLAVFVGW 154
Query 182 VLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFV 241
LS+ LVG + +N + L + IL+ LS +P K PH + VR P+S +
Sbjct 155 SLSWVFALVGLMVKNAALIGSLSMIIILVLTFLSNAFIPTKTLPHLLQTIVRLNPVSLTI 214
Query 242 AALRAL 247
A+R +
Sbjct 215 TAMRTI 220
>gi|28378558|ref|NP_785450.1| ABC transporter, permease protein [Lactobacillus plantarum WCFS1]
gi|300768072|ref|ZP_07077977.1| antibiotic resistance ABC superfamily ATP binding cassette transporter,
permease protein [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180714|ref|YP_003924842.1| ABC transporter, permease protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|300494136|gb|EFK29299.1| antibiotic resistance ABC superfamily ATP binding cassette transporter,
permease protein [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046205|gb|ADN98748.1| ABC transporter, permease protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342241937|emb|CCC79171.1| ABC transporter, permease protein, daunorubicin resistance family
B (Drr) [Lactobacillus plantarum WCFS1]
Length=256
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/186 (31%), Positives = 98/186 (53%), Gaps = 6/186 (3%)
Query 65 IPFAIPWNQFVGGASSGVASNLGQYITPLVT---LQAVSFAAIGSGFRAATDSLLGVNRR 121
I F + + GGA +A ++ Y+ LVT +Q++ AA GSG + D GV R
Sbjct 38 IIFTLLFGYLFGGA---IAGSVQAYLPMLVTGILIQSILNAASGSGQQLREDINAGVFDR 94
Query 122 FQSMPMAPLTPLLARVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGA 181
F+++P++P+ PL ++ V R +++LV +++G+R L ++G LL + +G
Sbjct 95 FKTLPISPIVPLAGQLVGDVFRLLISGLMALVTAFMMGWRPIVSPLVLIGVLLLAVFVGW 154
Query 182 VLSFAADLVGTVTRNPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFV 241
LS+ LVG + +N + L + IL+ LS +P K PH + VR P+S +
Sbjct 155 SLSWVFALVGLMVKNAALIGSLSMIIILVLTFLSNAFIPTKTLPHLLQTIVRLNPVSLTI 214
Query 242 AALRAL 247
A+R +
Sbjct 215 TAMRTI 220
>gi|343927763|ref|ZP_08767231.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343762404|dbj|GAA14157.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=286
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/221 (30%), Positives = 96/221 (44%), Gaps = 16/221 (7%)
Query 29 GRQMWVLYRRFAAPSLLNGEVLTTVGAPIIFMVGFYIPFAIPWNQFVGGA-SSGVASNLG 87
GRQ+ V R P+L+ V P + MV F + +G A S N
Sbjct 43 GRQIVVFVRD--KPTLVQALVF-----PALSMVMFKV--------VLGDAIGSATGQNSA 87
Query 88 QYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLARVWVAVDRCFTG 147
PLV L F +I S R + G+ R +P+ L +RV + R
Sbjct 88 YGTVPLVILVGAMFGSIASATRLNRERSTGLLARLFVLPIHRAADLTSRVASELARILVT 147
Query 148 LVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTRNPDAMLPLLSLP 207
VI L G++IGFRF +G VG L+ +A GA + + R ++P L L
Sbjct 148 TVILLAAGHLIGFRFTQGFGSAVGLILVALAYGAAFATLTLALAVSARPGAPIVPYLGLV 207
Query 208 ILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALA 248
+ + G P+ +P W+ P V NQP+S + ++RALA
Sbjct 208 SSLLMFFNSGFSPVSAYPTWLQPIVENQPMSPAIESMRALA 248
>gi|284042588|ref|YP_003392928.1| ABC transporter [Conexibacter woesei DSM 14684]
gi|283946809|gb|ADB49553.1| ABC-2 type transporter [Conexibacter woesei DSM 14684]
Length=285
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/189 (27%), Positives = 90/189 (48%), Gaps = 1/189 (0%)
Query 76 GGASSGVASNLGQYITPLVTLQAVSFAAIGSGFRAATDSLLGVNRRFQSMPMAPLTPLLA 135
GGA SG + P + Q V + +G + D GV RF+S+P+A + PL
Sbjct 78 GGAISGDVKAYLPLMIPGIVAQTVLTTCMATGVQLREDMDKGVFDRFKSLPIARIAPLAG 137
Query 136 RVWVAVDRCFTGLVISLVCGYVIGFRFHRGALYIVGFCLLVIAIGAVLSFAADLVGTVTR 195
+ + R ++ G ++G+R G L ++G +L I G +++ +GT+ R
Sbjct 138 PMVADLIRYLIAATLTFAMGILLGYRPDGGVLGVLGAIVLAIFTGWAIAWIFTWIGTLAR 197
Query 196 NPDAMLPLLSLPILIFGLLSIGLMPLKLFPHWIHPFVRNQPISQFVAALRALAGDTTKTA 255
+ ++ + + + LS +P+ P W+ FV P+S V+A R LA T +
Sbjct 198 SAQSVQGMSMMILFPLTFLSNAFVPVDTLPGWLQTFVNVNPVSHLVSATRDLANHAT-IS 256
Query 256 SQVSWPVMA 264
S+V W ++A
Sbjct 257 SEVGWTLLA 265
Lambda K H
0.329 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 470845709104
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40