BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2960c

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842511|ref|NP_337548.1|  hypothetical protein MT3036 [Mycoba...   166    1e-39
gi|15610097|ref|NP_217476.1|  hypothetical protein Rv2960c [Mycob...   163    6e-39
gi|213649341|ref|ZP_03379394.1|  hypothetical protein SentesTy_19...  66.6    1e-09


>gi|15842511|ref|NP_337548.1| hypothetical protein MT3036 [Mycobacterium tuberculosis CDC1551]
 gi|167970021|ref|ZP_02552298.1| hypothetical protein MtubH3_19118 [Mycobacterium tuberculosis 
H37Ra]
 gi|13882820|gb|AAK47362.1| hypothetical protein MT3036 [Mycobacterium tuberculosis CDC1551]
Length=116

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1    VGRNATAVVSLPVVALSPRAGQAGYLWQSITRGLRVTPICCYHPPCGGGVQKMLSRKLGR  60
            VGRNATAVVSLPVVALSPRAGQAGYLWQSITRGLRVTPICCYHPPCGGGVQKMLSRKLGR
Sbjct  35   VGRNATAVVSLPVVALSPRAGQAGYLWQSITRGLRVTPICCYHPPCGGGVQKMLSRKLGR  94

Query  61   VCPAPSPKDAARGAHNVGANAV  82
            VCPAPSPKDAARGAHNVGANAV
Sbjct  95   VCPAPSPKDAARGAHNVGANAV  116


>gi|15610097|ref|NP_217476.1| hypothetical protein Rv2960c [Mycobacterium tuberculosis H37Rv]
 gi|31794136|ref|NP_856629.1| hypothetical protein Mb2984c [Mycobacterium bovis AF2122/97]
 gi|121638841|ref|YP_979065.1| hypothetical protein BCG_2981c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 46 more sequence titles
 Length=82

 Score =  163 bits (413),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 81/82 (99%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   VGRNATAVVSLPVVALSPRAGQAGYLWQSITRGLRVTPICCYHPPCGGGVQKMLSRKLGR  60
           +GRNATAVVSLPVVALSPRAGQAGYLWQSITRGLRVTPICCYHPPCGGGVQKMLSRKLGR
Sbjct  1   MGRNATAVVSLPVVALSPRAGQAGYLWQSITRGLRVTPICCYHPPCGGGVQKMLSRKLGR  60

Query  61  VCPAPSPKDAARGAHNVGANAV  82
           VCPAPSPKDAARGAHNVGANAV
Sbjct  61  VCPAPSPKDAARGAHNVGANAV  82


>gi|213649341|ref|ZP_03379394.1| hypothetical protein SentesTy_19872 [Salmonella enterica subsp. 
enterica serovar Typhi str. J185]
Length=49

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  1   VGRNATAVVSLPVVALSPRAGQAGYLWQSITRG  33
           VGRNATAVVSLPVVALSPRAGQAGYLWQSITRG
Sbjct  17  VGRNATAVVSLPVVALSPRAGQAGYLWQSITRG  49



Lambda     K      H
   0.321    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127967590486


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40