BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2961

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610098|ref|NP_217477.1|  transposase [Mycobacterium tubercul...   260    4e-68
gi|289751636|ref|ZP_06511014.1|  transposase [Mycobacterium tuber...   259    8e-68
gi|111025277|ref|YP_707697.1|  transposase [Rhodococcus jostii RH...   205    2e-51
gi|111025371|ref|YP_707791.1|  transposase [Rhodococcus jostii RH...   205    2e-51
gi|111026324|ref|YP_708607.1|  transposase [Rhodococcus jostii RH...   201    3e-50
gi|258652805|ref|YP_003201961.1|  transposase IS4 family protein ...   186    1e-45
gi|308406141|ref|ZP_07495279.2|  transposase [Mycobacterium tuber...   179    1e-43
gi|167966936|ref|ZP_02549213.1|  transposase [Mycobacterium tuber...   178    2e-43
gi|289449083|ref|ZP_06438827.1|  transposase [Mycobacterium tuber...   178    3e-43
gi|15610523|ref|NP_217904.1|  transposase [Mycobacterium tubercul...   178    3e-43
gi|308377331|ref|ZP_07668489.1|  transposase [Mycobacterium tuber...   177    4e-43
gi|308232447|ref|ZP_07664088.1|  transposase [Mycobacterium tuber...   177    5e-43
gi|253799934|ref|YP_003032935.1|  transposase [Mycobacterium tube...   171    4e-41
gi|148822243|ref|YP_001286997.1|  transposase [Mycobacterium tube...   171    4e-41
gi|15608174|ref|NP_215550.1|  transposase [Mycobacterium tubercul...   170    7e-41
gi|344218861|gb|AEM99491.1|  transposase [Mycobacterium tuberculo...   168    3e-40
gi|298526868|ref|ZP_07014277.1|  transposase [Mycobacterium tuber...   158    2e-37
gi|289747214|ref|ZP_06506592.1|  transposase [Mycobacterium tuber...   135    3e-30
gi|289759546|ref|ZP_06518924.1|  hypothetical protein TBEG_03027 ...   104    3e-21
gi|83590978|ref|YP_430987.1|  transposase IS4 [Moorella thermoace...   102    2e-20
gi|253577715|ref|ZP_04855012.1|  transposase [Paenibacillus sp. o...  98.2    3e-19
gi|147677689|ref|YP_001211904.1|  hypothetical protein PTH_1354 [...  97.1    8e-19
gi|308205889|gb|ADO19301.1|  hypothetical protein Nfla_9401 [Nost...  89.7    1e-16
gi|169830876|ref|YP_001716858.1|  putative methyl-accepting chemo...  88.6    3e-16
gi|298251049|ref|ZP_06974853.1|  transposase IS4 family protein [...  78.6    3e-13
gi|298248375|ref|ZP_06972180.1|  transposase IS4 family protein [...  78.6    3e-13
gi|298241044|ref|ZP_06964851.1|  transposase IS4 family protein [...  78.6    3e-13
gi|298248369|ref|ZP_06972174.1|  transposase IS4 family protein [...  78.6    3e-13
gi|298248371|ref|ZP_06972176.1|  transposase IS4 family protein [...  69.7    1e-10
gi|227821504|ref|YP_002825474.1|  putative transposase for insert...  58.9    3e-07
gi|227819871|ref|YP_002823842.1|  transposon-related protein [Sin...  58.5    3e-07
gi|13475196|ref|NP_106760.1|  transposase [Mesorhizobium loti MAF...  57.0    1e-06
gi|16263346|ref|NP_436139.1|  TRm17b transposase fragment [Sinorh...  56.6    1e-06
gi|15966575|ref|NP_386928.1|  putative partial transposase for IS...  56.6    1e-06
gi|20804074|emb|CAD31277.1|  PUTATIVE TRANSPOSASE FOR INSERTION E...  56.6    1e-06
gi|15966358|ref|NP_386711.1|  transposase ISRM17 [Sinorhizobium m...  56.2    2e-06
gi|334317360|ref|YP_004549979.1|  transposase IS4 family protein ...  56.2    2e-06
gi|2496742|sp|P55642.1|Y4RI_RHISN  RecName: Full=Uncharacterized ...  55.5    2e-06
gi|334320405|ref|YP_004557034.1|  transposase IS4 family protein ...  55.5    2e-06
gi|334319413|ref|YP_004551972.1|  transposase IS4 family protein ...  55.5    2e-06
gi|116253888|ref|YP_769726.1|  transposon-related protein [Rhizob...  55.5    3e-06
gi|120553324|ref|YP_957675.1|  transposase, IS4 family protein [M...  52.8    2e-05
gi|298527643|ref|ZP_07015047.1|  transposase IS4 family protein [...  50.1    1e-04
gi|85858589|ref|YP_460791.1|  transposase [Syntrophus aciditrophi...  47.8    6e-04
gi|124514705|gb|EAY56217.1|  probable transposase [Leptospirillum...  45.8    0.002
gi|124514919|gb|EAY56430.1|  probable transposase [Leptospirillum...  45.4    0.003
gi|124515501|gb|EAY57011.1|  probable transposase [Leptospirillum...  44.7    0.004
gi|124516081|gb|EAY57590.1|  putative transposase [Leptospirillum...  44.7    0.004
gi|124516354|gb|EAY57862.1|  transposase [Leptospirillum rubarum]     44.7    0.004
gi|206603356|gb|EDZ39836.1|  Transposase [Leptospirillum sp. Grou...  44.7    0.005


>gi|15610098|ref|NP_217477.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|31794137|ref|NP_856630.1| transposase [Mycobacterium bovis AF2122/97]
 gi|121638842|ref|YP_979066.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 72 more sequence titles
 Length=129

 Score =  260 bits (665),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 128/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +EHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR
Sbjct  1    MEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN
Sbjct  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120

Query  121  LIKISSLAA  129
            LIKISSLAA
Sbjct  121  LIKISSLAA  129


>gi|289751636|ref|ZP_06511014.1| transposase [Mycobacterium tuberculosis T92]
 gi|289692223|gb|EFD59652.1| transposase [Mycobacterium tuberculosis T92]
Length=129

 Score =  259 bits (663),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 127/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +EHGNPHDAPQLAPAVE+ITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR
Sbjct  1    MEHGNPHDAPQLAPAVEQITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN
Sbjct  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120

Query  121  LIKISSLAA  129
            LIKISSLAA
Sbjct  121  LIKISSLAA  129


>gi|111025277|ref|YP_707697.1| transposase [Rhodococcus jostii RHA1]
 gi|110824256|gb|ABG99539.1| probable transposase [Rhodococcus jostii RHA1]
Length=479

 Score =  205 bits (522),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 98/129 (76%), Positives = 109/129 (85%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPAV+R+ TRAGRPP TVTADRGYGEK VEDDL DLGVR V IPRKG+
Sbjct  351  VERGNPADAPQLAPAVDRVRTRAGRPPRTVTADRGYGEKAVEDDLRDLGVRHVVIPRKGK  410

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRAEE RP+FRRT+KWRTG EGRIS LKR YGW+R+ ID TEG +IW  HG+L HN
Sbjct  411  PSADRRAEEHRPAFRRTIKWRTGVEGRISALKRGYGWDRTRIDSTEGAKIWVGHGVLAHN  470

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  471  LVKISTLAA  479


>gi|111025371|ref|YP_707791.1| transposase [Rhodococcus jostii RHA1]
 gi|110824350|gb|ABG99633.1| transposase [Rhodococcus jostii RHA1]
Length=479

 Score =  205 bits (521),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 98/129 (76%), Positives = 109/129 (85%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPAV+R+ TRAGRPP TVTADRGYGEK VEDDL DLGVR V IPRKG+
Sbjct  351  VERGNPADAPQLAPAVDRVRTRAGRPPRTVTADRGYGEKAVEDDLRDLGVRHVVIPRKGK  410

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRAEE RP+FRRT+KWRTG EGRIS LKR YGW+R+ ID TEG +IW  HG+L HN
Sbjct  411  PSADRRAEEHRPAFRRTIKWRTGVEGRISALKRGYGWDRTRIDSTEGAQIWVGHGVLAHN  470

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  471  LVKISTLAA  479


>gi|111026324|ref|YP_708607.1| transposase [Rhodococcus jostii RHA1]
 gi|110825167|gb|ABH00449.1| possible transposase [Rhodococcus jostii RHA1]
Length=173

 Score =  201 bits (511),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 98/129 (76%), Positives = 109/129 (85%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPAV+R+ TRAGRPP TVTADRGYGEK VEDDL DLGVR V IPRKG+
Sbjct  45   VERGNPADAPQLAPAVDRVRTRAGRPPRTVTADRGYGEKAVEDDLRDLGVRHVVIPRKGK  104

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRAEE RP+FRRT+KWRTG EGRIS LKR YGW+R+ ID TEG +IW  HG+L HN
Sbjct  105  PSADRRAEEHRPAFRRTIKWRTGVEGRISALKRGYGWDRTRIDSTEGAKIWVGHGVLAHN  164

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  165  LVKISTLAA  173


>gi|258652805|ref|YP_003201961.1| transposase IS4 family protein [Nakamurella multipartita DSM 
44233]
 gi|258556030|gb|ACV78972.1| transposase IS4 family protein [Nakamurella multipartita DSM 
44233]
Length=346

 Score =  186 bits (471),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 91/129 (71%), Positives = 101/129 (79%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA++RIT R GR P TVTADRGYGE  V+  L D GVR V IPRKGR
Sbjct  218  VELGNPPDAPQLAPAIDRITARTGRTPRTVTADRGYGEASVDQQLTDRGVRNVVIPRKGR  277

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            P  ARRA E RP+FRRTVKWRTG EGRISTLKR YGW+R+ +D  EG R WT  GILTHN
Sbjct  278  PGAARRAVEHRPAFRRTVKWRTGCEGRISTLKRGYGWDRTRLDSLEGARTWTGQGILTHN  337

Query  121  LIKISSLAA  129
            L+KI++L A
Sbjct  338  LVKIAALTA  346


>gi|308406141|ref|ZP_07495279.2| transposase [Mycobacterium tuberculosis SUMu012]
 gi|308364375|gb|EFP53226.1| transposase [Mycobacterium tuberculosis SUMu012]
Length=272

 Score =  179 bits (454),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +
Sbjct  144  VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK  203

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HN
Sbjct  204  PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN  263

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  264  LVKISTLAA  272


>gi|167966936|ref|ZP_02549213.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|253800433|ref|YP_003033434.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|254552492|ref|ZP_05142939.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 6 more sequence titles
 Length=246

 Score =  178 bits (452),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +
Sbjct  118  VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK  177

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HN
Sbjct  178  PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN  237

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  238  LVKISTLAA  246


>gi|289449083|ref|ZP_06438827.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289422041|gb|EFD19242.1| transposase [Mycobacterium tuberculosis CPHL_A]
Length=225

 Score =  178 bits (451),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +
Sbjct  97   VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK  156

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HN
Sbjct  157  PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN  216

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  217  LVKISTLAA  225


>gi|15610523|ref|NP_217904.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15842980|ref|NP_338017.1| IS1560 transposase [Mycobacterium tuberculosis CDC1551]
 gi|31794567|ref|NP_857060.1| transposase [Mycobacterium bovis AF2122/97]
 41 more sequence titles
 Length=225

 Score =  178 bits (451),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +
Sbjct  97   VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK  156

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HN
Sbjct  157  PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN  216

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  217  LVKISTLAA  225


>gi|308377331|ref|ZP_07668489.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308348260|gb|EFP37111.1| transposase [Mycobacterium tuberculosis SUMu008]
Length=177

 Score =  177 bits (449),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +
Sbjct  49   VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK  108

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HN
Sbjct  109  PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN  168

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  169  LVKISTLAA  177


>gi|308232447|ref|ZP_07664088.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308370250|ref|ZP_07666902.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308371330|ref|ZP_07667139.1| transposase [Mycobacterium tuberculosis SUMu003]
 17 more sequence titles
 Length=170

 Score =  177 bits (449),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP DAPQLAPA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +
Sbjct  42   VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK  101

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HN
Sbjct  102  PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN  161

Query  121  LIKISSLAA  129
            L+KIS+LAA
Sbjct  162  LVKISTLAA  170


>gi|253799934|ref|YP_003032935.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|298524532|ref|ZP_07011941.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308231706|ref|ZP_07413508.2| transposase [Mycobacterium tuberculosis SUMu001]
 17 more sequence titles
 Length=164

 Score =  171 bits (433),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 84/129 (66%), Positives = 97/129 (76%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            V+ GNP DAPQLAPAV  +  RAGR P TVTADRGYGE  V+  L ++GV+ V IPRKG+
Sbjct  36   VQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVGVKNVLIPRKGK  95

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R  I G EGTR W  HG+  HN
Sbjct  96   PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN  155

Query  121  LIKISSLAA  129
            L+ IS+L A
Sbjct  156  LVTISALPA  164


>gi|148822243|ref|YP_001286997.1| transposase [Mycobacterium tuberculosis F11]
 gi|167968535|ref|ZP_02550812.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|254231326|ref|ZP_04924653.1| hypothetical protein TBCG_01022 [Mycobacterium tuberculosis C]
 20 more sequence titles
 Length=163

 Score =  171 bits (433),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 84/129 (66%), Positives = 97/129 (76%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            V+ GNP DAPQLAPAV  +  RAGR P TVTADRGYGE  V+  L ++GV+ V IPRKG+
Sbjct  35   VQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVGVKNVLIPRKGK  94

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R  I G EGTR W  HG+  HN
Sbjct  95   PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN  154

Query  121  LIKISSLAA  129
            L+ IS+L A
Sbjct  155  LVTISALPA  163


>gi|15608174|ref|NP_215550.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15840464|ref|NP_335501.1| IS1560 transposase [Mycobacterium tuberculosis CDC1551]
 gi|31792226|ref|NP_854719.1| transposase [Mycobacterium bovis AF2122/97]
 31 more sequence titles
 Length=129

 Score =  170 bits (430),  Expect = 7e-41, Method: Compositional matrix adjust.
 Identities = 83/129 (65%), Positives = 97/129 (76%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            ++ GNP DAPQLAPAV  +  RAGR P TVTADRGYGE  V+  L ++GV+ V IPRKG+
Sbjct  1    MQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVGVKNVLIPRKGK  60

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R  I G EGTR W  HG+  HN
Sbjct  61   PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN  120

Query  121  LIKISSLAA  129
            L+ IS+L A
Sbjct  121  LVTISALPA  129


>gi|344218861|gb|AEM99491.1| transposase [Mycobacterium tuberculosis CTRI-2]
Length=129

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 82/129 (64%), Positives = 96/129 (75%), Gaps = 0/129 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            ++ GNP DAPQLAPAV  +  RAGR P TVTADRGYGE  V+  L ++ V+ V IPRKG+
Sbjct  1    MQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVAVKNVLIPRKGK  60

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R  I G EGTR W  HG+  HN
Sbjct  61   PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN  120

Query  121  LIKISSLAA  129
            L+ IS+L A
Sbjct  121  LVTISALPA  129


>gi|298526868|ref|ZP_07014277.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496662|gb|EFI31956.1| transposase [Mycobacterium tuberculosis 94_M4241A]
Length=118

 Score =  158 bits (400),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 76/118 (65%), Positives = 90/118 (77%), Gaps = 0/118 (0%)

Query  12   LAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQARRAEEQR  71
            +APA+ERI+ R GRPP  VTADRG G+  VEDDLH LGVR VAIPRK +PS  RRA E R
Sbjct  1    MAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSKPSATRRAFEHR  60

Query  72   PSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKISSLAA  129
             +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R W  HG+  HNL+KIS+LAA
Sbjct  61   RAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHNLVKISTLAA  118


>gi|289747214|ref|ZP_06506592.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289687742|gb|EFD55230.1| transposase [Mycobacterium tuberculosis 02_1987]
Length=100

 Score =  135 bits (339),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 0/100 (0%)

Query  30   VTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQARRAEEQRPSFRRTVKWRTGSEGRIS  89
            +TADRG G+  VEDDLH LGVR VAIPRK +PS  RRA E R +FR  +KWRTGSEGRI+
Sbjct  1    MTADRGCGDASVEDDLHQLGVRNVAIPRKSKPSATRRAFEHRRAFRDKIKWRTGSEGRIN  60

Query  90   TLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKISSLAA  129
             LKR+YGWNR+ + G  G R W  HG+  HNL+KIS+LAA
Sbjct  61   HLKRSYGWNRTELTGITGARTWCGHGVFAHNLVKISTLAA  100


>gi|289759546|ref|ZP_06518924.1| hypothetical protein TBEG_03027 [Mycobacterium tuberculosis T85]
 gi|289715110|gb|EFD79122.1| hypothetical protein TBEG_03027 [Mycobacterium tuberculosis T85]
Length=80

 Score =  104 bits (260),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 49/80 (62%), Positives = 60/80 (75%), Gaps = 0/80 (0%)

Query  50   VRTVAIPRKGRPSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTR  109
            +R VAIPRK +PS  RRA E R +FR  +KWRTGSEGRI+ LKR+YGWNR+ + G  G R
Sbjct  1    MRNVAIPRKSKPSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGAR  60

Query  110  IWTRHGILTHNLIKISSLAA  129
             W  HG+  HNL+KIS+LAA
Sbjct  61   TWCGHGVFAHNLVKISTLAA  80


>gi|83590978|ref|YP_430987.1| transposase IS4 [Moorella thermoacetica ATCC 39073]
 gi|83573892|gb|ABC20444.1| transposase, IS4 family [Moorella thermoacetica ATCC 39073]
Length=174

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 55/128 (43%), Positives = 74/128 (58%), Gaps = 1/128 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            V  GNP D   L  AVE        PP  + ADRG+G    +   H LGV+ V++PRKG+
Sbjct  48   VLQGNPADDTLLLGAVEDHIKTFNHPPRALAADRGFGGSG-KSGCHQLGVKQVSLPRKGK  106

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
             S+ARRA + +  F+R  +WR G E  IS LKR YG  RS   G EGT  W  +GIL +N
Sbjct  107  ISKARRAYQLQSWFKRLQRWRAGGEATISLLKRKYGLRRSLSRGYEGTTTWVGYGILAYN  166

Query  121  LIKISSLA  128
            L +++++ 
Sbjct  167  LHRLATMV  174


>gi|253577715|ref|ZP_04855012.1| transposase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251842893|gb|EES70945.1| transposase [Paenibacillus sp. oral taxon 786 str. D14]
Length=457

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 50/121 (42%), Positives = 67/121 (56%), Gaps = 0/121 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            V  GNP D   L PAV+    + G+ P  V  DRG+  K+ E  + +LGV+  ++PRKG+
Sbjct  328  VYEGNPSDDELLVPAVQAHIKQFGKAPQAVATDRGFSSKKNETAITELGVKRASLPRKGK  387

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
               AR   E    F+   ++R   E +IS LKR YG NRS   G  G++ W   GILTHN
Sbjct  388  KGIARSEYENELWFKDLQRYRAAGEAKISLLKRKYGLNRSRYRGFVGSKCWVGFGILTHN  447

Query  121  L  121
            L
Sbjct  448  L  448


>gi|147677689|ref|YP_001211904.1| hypothetical protein PTH_1354 [Pelotomaculum thermopropionicum 
SI]
 gi|147678361|ref|YP_001212576.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum 
SI]
 gi|146273786|dbj|BAF59535.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146274458|dbj|BAF60207.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum 
SI]
Length=450

 Score = 97.1 bits (240),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 51/119 (43%), Positives = 65/119 (55%), Gaps = 0/119 (0%)

Query  3    HGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPS  62
             GNP D   L PAVE+   R    P  V  DRG+G +  E+ LH LGVR ++ P KGR S
Sbjct  325  QGNPADDGLLIPAVEQHKKRFRSSPSAVATDRGFGSQSNEEALHTLGVRRISSPLKGRKS  384

Query  63   QARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNL  121
            + R   E +  F+   ++R   E +IS LKR YG NRS   G  G++ W   GI  HNL
Sbjct  385  KKRMEYEAQLWFKDLQRFRAAGEAKISLLKRKYGLNRSLYRGFTGSKTWVGFGIWVHNL  443


>gi|308205889|gb|ADO19301.1| hypothetical protein Nfla_9401 [Nostoc flagelliforme str. Sunitezuoqi]
Length=180

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 47/122 (39%), Positives = 66/122 (55%), Gaps = 0/122 (0%)

Query  4    GNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQ  63
            GNPHD  QL P++++     G  P  VT DRG   +  E+    LGV+ V +P+ G  S+
Sbjct  45   GNPHDTQQLIPSLDQHLENFGSSPKIVTTDRGVYSQTNENYAQLLGVKEVILPKGGYRSK  104

Query  64   ARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIK  123
             R   E++ +F++  +W  G EGRIS LKR +G  R    G  G   W   G++ HNL  
Sbjct  105  ERIKHERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFCRWVGWGVIAHNLTI  164

Query  124  IS  125
            IS
Sbjct  165  IS  166


>gi|169830876|ref|YP_001716858.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169831953|ref|YP_001717935.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169831954|ref|YP_001717936.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169831955|ref|YP_001717937.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169637720|gb|ACA59226.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169638797|gb|ACA60303.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169638798|gb|ACA60304.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169638799|gb|ACA60305.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
Length=464

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 49/127 (39%), Positives = 65/127 (52%), Gaps = 0/127 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            V  GNP D   L P +     R GR P     DRG+     E  L  LG+R +++P KG+
Sbjct  337  VMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGK  396

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
             S +R   E++  FRR  +WR G EG IS LKR YG  R+   G  G R W    +  +N
Sbjct  397  RSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYN  456

Query  121  LIKISSL  127
            L +I+ L
Sbjct  457  LNRIAKL  463


>gi|298251049|ref|ZP_06974853.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297549053|gb|EFH82920.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=362

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)

Query  6    PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR  65
            PH+  Q   A+         PP  +  DRG       +     GV+ VAIP +G+ SQ +
Sbjct  238  PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ  297

Query  66   RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS  125
            RA+E   +F+R  +WR G EGRI +L+R+YG  R    G +G + W   GI++ NL  I+
Sbjct  298  RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA  357

Query  126  S  126
             
Sbjct  358  Q  358


>gi|298248375|ref|ZP_06972180.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551034|gb|EFH84900.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)

Query  6    PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR  65
            PH+  Q   A+         PP  +  DRG       +     GV+ VAIP +G+ SQ +
Sbjct  337  PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ  396

Query  66   RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS  125
            RA+E   +F+R  +WR G EGRI +L+R+YG  R    G +G + W   GI++ NL  I+
Sbjct  397  RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA  456

Query  126  S  126
             
Sbjct  457  Q  457


>gi|298241044|ref|ZP_06964851.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554098|gb|EFH87962.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)

Query  6    PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR  65
            PH+  Q   A+         PP  +  DRG       +     GV+ VAIP +G+ SQ +
Sbjct  337  PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ  396

Query  66   RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS  125
            RA+E   +F+R  +WR G EGRI +L+R+YG  R    G +G + W   GI++ NL  I+
Sbjct  397  RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA  456

Query  126  S  126
             
Sbjct  457  Q  457


>gi|298248369|ref|ZP_06972174.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551028|gb|EFH84894.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)

Query  6    PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR  65
            PH+  Q   A+         PP  +  DRG       +     GV+ VAIP +G+ SQ +
Sbjct  337  PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ  396

Query  66   RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS  125
            RA+E   +F+R  +WR G EGRI +L+R+YG  R    G +G + W   GI++ NL  I+
Sbjct  397  RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA  456

Query  126  S  126
             
Sbjct  457  Q  457


>gi|298248371|ref|ZP_06972176.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551030|gb|EFH84896.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=324

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 42/103 (41%), Positives = 60/103 (59%), Gaps = 0/103 (0%)

Query  24   GRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQARRAEEQRPSFRRTVKWRTG  83
             RPP  VT DRG      E+ L   GV+ +AIP  G+ S+ R+A E+   FRR  ++R G
Sbjct  218  ARPPHLVTGDRGVHSADTEERLRAAGVKRIAIPAMGKVSEERQALERTRGFRRGYRFRAG  277

Query  84   SEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKISS  126
             EGRI++L+R+YGW++    G +G   W   G+L  NL  I+ 
Sbjct  278  IEGRIASLRRDYGWSKCRYHGQDGMERWLGLGVLASNLRHIAQ  320


>gi|227821504|ref|YP_002825474.1| putative transposase for insertion sequence NGRIS-22c [Sinorhizobium 
fredii NGR234]
 gi|227822034|ref|YP_002826005.1| putative transposase for insertion sequence NGRIS-22b [Sinorhizobium 
fredii NGR234]
 gi|227823622|ref|YP_002827595.1| putative transposase for insertion sequence NGRIS-22a [Sinorhizobium 
fredii NGR234]
 gi|36958764|gb|AAQ87232.1| Transposase [Sinorhizobium fredii NGR234]
 gi|227340503|gb|ACP24721.1| putative transposase for insertion sequence NGRIS-22c [Sinorhizobium 
fredii NGR234]
 gi|227341034|gb|ACP25252.1| putative transposase for insertion sequence NGRIS-22b [Sinorhizobium 
fredii NGR234]
 gi|227342624|gb|ACP26842.1| putative transposase for insertion sequence NGRIS-22a [Sinorhizobium 
fredii NGR234]
Length=444

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 38/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G PP    AD GY  +         G+R +A  +K R
Sbjct  316  IEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKK-R  374

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
                      R  +R+   +R G E  IS LKR YG  R    G +  + +    ++ +N
Sbjct  375  GLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYN  434

Query  121  LIKISSL  127
            L   + L
Sbjct  435  LALFARL  441


>gi|227819871|ref|YP_002823842.1| transposon-related protein [Sinorhizobium fredii NGR234]
 gi|227338870|gb|ACP23089.1| putative transposon-related protein [Sinorhizobium fredii NGR234]
Length=418

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 38/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G PP    AD GY  +         G+R +A  +K R
Sbjct  290  IEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKK-R  348

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
                      R  +R+   +R G E  IS LKR YG  R    G +  + +    ++ +N
Sbjct  349  GLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYN  408

Query  121  LIKISSL  127
            L   + L
Sbjct  409  LALFARL  415


>gi|13475196|ref|NP_106760.1| transposase [Mesorhizobium loti MAFF303099]
 gi|14025947|dbj|BAB52546.1| transposase [Mesorhizobium loti MAFF303099]
Length=291

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 40/130 (31%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L   +ER     G PP    AD GY  +         GVR +A  +K  
Sbjct  163  IEAGNPADSERLLLMLERHIAFYGEPPRQAAADGGYASRANLRQAKAWGVRDMAFHKKS-  221

Query  61   PSQARRAEEQRPS---FRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
               A R E+   S   +R+   +R G E  IS LKR YG  R    G    + +    ++
Sbjct  222  ---ALRIEDMVSSRWVYRKLRNFRAGIEASISCLKRAYGLARCTWRGLNHFKAYVWSSVV  278

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  279  AYNLALFTRL  288


>gi|16263346|ref|NP_436139.1| TRm17b transposase fragment [Sinorhizobium meliloti 1021]
 gi|14524028|gb|AAK65551.1| TRm17b transposase fragment [Sinorhizobium meliloti 1021]
Length=168

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G  P    AD GY  +         GVR +A  +K  
Sbjct  40   IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKK--  97

Query  61   PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
                 R E+    R  +R+   +R G E  IS LKR YG  R    G +  + +    ++
Sbjct  98   --SGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV  155

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  156  AYNLALFARL  165


>gi|15966575|ref|NP_386928.1| putative partial transposase for ISRM17 protein [Sinorhizobium 
meliloti 1021]
 gi|15075846|emb|CAC47401.1| Putative partial transposase for ISRm17 protein [Sinorhizobium 
meliloti 1021]
Length=174

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G  P    AD GY  +         GVR +A  +K  
Sbjct  46   IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKK--  103

Query  61   PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
                 R E+    R  +R+   +R G E  IS LKR YG  R    G +  + +    ++
Sbjct  104  --SGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV  161

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  162  AYNLALFARL  171


>gi|20804074|emb|CAD31277.1| PUTATIVE TRANSPOSASE FOR INSERTION ELEMENT PROTEIN [Mesorhizobium 
loti R7A]
Length=444

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 40/130 (31%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L   +ER     G PP    AD GY  +         GVR +A  +K  
Sbjct  316  IEAGNPADSERLLLMLERHIAFYGEPPRQAAADGGYASRPNLRQAKAWGVRDMAFHKKS-  374

Query  61   PSQARRAEEQRPS---FRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
               A R E+   S   +R+   +R G E  IS LKR YG  R    G    + +    ++
Sbjct  375  ---ALRIEDMVSSRWVYRKLRNFRAGIEASISCLKRAYGLARCTWRGLNHFKAYVWSSVV  431

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  432  AYNLALFTRL  441


>gi|15966358|ref|NP_386711.1| transposase ISRM17 [Sinorhizobium meliloti 1021]
 gi|15966866|ref|NP_387219.1| transposase [Sinorhizobium meliloti 1021]
 gi|15075629|emb|CAC47184.1| Putative transposase for ISRm17 protein [Sinorhizobium meliloti 
1021]
 gi|15076138|emb|CAC47692.1| Putative transposase for insertion sequence ISRm17 [Sinorhizobium 
meliloti 1021]
 gi|333814851|gb|AEG07519.1| transposase IS4 family protein [Sinorhizobium meliloti BL225C]
 gi|333814992|gb|AEG07660.1| transposase IS4 family protein [Sinorhizobium meliloti BL225C]
Length=444

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G  P    AD GY  +         GVR +A  +K  
Sbjct  316  IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS-  374

Query  61   PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
                 R E+    R  +R+   +R G E  IS LKR YG  R    G +  + +    ++
Sbjct  375  ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV  431

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  432  AYNLALFARL  441


>gi|334317360|ref|YP_004549979.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gi|334318742|ref|YP_004551301.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gi|334319156|ref|YP_004551715.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 11 more sequence titles
 Length=444

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G  P    AD GY  +         GVR +A  +K  
Sbjct  316  IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS-  374

Query  61   PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
                 R E+    R  +R+   +R G E  IS LKR YG  R    G +  + +    ++
Sbjct  375  ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV  431

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  432  AYNLALFARL  441


>gi|2496742|sp|P55642.1|Y4RI_RHISN RecName: Full=Uncharacterized protein y4rI
Length=390

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 37/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G PP    AD GY  +         G+R +A  +K R
Sbjct  262  IEAGNPADSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKK-R  320

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
              +       R  +R+   +R G +  IS LKR YG  R    G +  + +     + +N
Sbjct  321  GLKIEDMVRSRWVYRKLRNFRAGIDAGISCLKRAYGLGRCTWRGLDHFKAYVWSSAVAYN  380

Query  121  LIKISSL  127
            L   + L
Sbjct  381  LSLFARL  387


>gi|334320405|ref|YP_004557034.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gi|334098144|gb|AEG56154.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
Length=447

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G  P    AD GY  +         GVR +A  +K  
Sbjct  319  IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS-  377

Query  61   PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
                 R E+    R  +R+   +R G E  IS LKR YG  R    G +  + +    ++
Sbjct  378  ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV  434

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  435  AYNLALFARL  444


>gi|334319413|ref|YP_004551972.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gi|334099840|gb|AEG57849.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
Length=444

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D+ +L P +ER     G  P    AD GY  +         GVR +A  +K  
Sbjct  316  IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS-  374

Query  61   PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL  117
                 R E+    R  +R+   +R G E  IS LKR YG  R    G +  + +    ++
Sbjct  375  ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYDWSSVV  431

Query  118  THNLIKISSL  127
             +NL   + L
Sbjct  432  AYNLALFARL  441


>gi|116253888|ref|YP_769726.1| transposon-related protein [Rhizobium leguminosarum bv. viciae 
3841]
 gi|116254976|ref|YP_770811.1| putative transposase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258536|emb|CAK09640.1| putative transposon-related protein [Rhizobium leguminosarum 
bv. viciae 3841]
 gi|115259624|emb|CAK11605.1| putative transposase [Rhizobium leguminosarum bv. viciae 3841]
Length=444

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 37/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            VE GNP D+ +L P +ER     G  P    AD GY  +         G+R +A  +K  
Sbjct  316  VEAGNPADSERLQPMLERHIAFYGAAPRQAAADGGYASRTNLSQAKAWGIRDMAFHKKC-  374

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
              +     + R  +R+   +R G E  IS LKR YG  R    G +  + +    ++ +N
Sbjct  375  GLKIEDMVKSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYN  434

Query  121  LIKISSL  127
            L   + L
Sbjct  435  LALFARL  441


>gi|120553324|ref|YP_957675.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
 gi|120554139|ref|YP_958490.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
 gi|120554717|ref|YP_959068.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
 gi|120555302|ref|YP_959653.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
 gi|120323173|gb|ABM17488.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
 gi|120323988|gb|ABM18303.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
 gi|120324566|gb|ABM18881.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
 gi|120325151|gb|ABM19466.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
Length=446

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/127 (26%), Positives = 61/127 (49%), Gaps = 1/127 (0%)

Query  1    VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR  60
            +E GNP D     P ++   +  G+ P +V AD GY  +        +G++ V   +   
Sbjct  318  IEEGNPGDKTLFLPVLDYHRSVLGKLPRSVVADGGYASQANVAAGRAMGLKHVVFHKPVG  377

Query  61   PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
             S      + + +F+    +R G EG IS LKR +G  ++   G +G + +     L++N
Sbjct  378  VSLTAMGVKSK-TFKALRHFRAGIEGNISELKRAFGAAKAMWKGHDGFKAFVWASALSYN  436

Query  121  LIKISSL  127
            L++++ L
Sbjct  437  LVRLARL  443


>gi|298527643|ref|ZP_07015047.1| transposase IS4 family protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298511295|gb|EFI35197.1| transposase IS4 family protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=446

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 31/118 (27%), Positives = 53/118 (45%), Gaps = 1/118 (0%)

Query  4    GNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQ  63
            GNP+D+  +   VER      + P  +  D G+  +   D   + GV+ V   +K R   
Sbjct  324  GNPNDSSLVEEIVERQKKTLDKTPRKIAMDGGFASQNSLDKAKEAGVKDVCFAKK-RNLN  382

Query  64   ARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNL  121
                 +    +++   +R G E  IST+KR +G +R    G EG + +    ++  NL
Sbjct  383  ILDMVKSSYVYKKLRNFRAGIEAIISTMKRAFGLDRCTWQGWEGFKQYVWSSVVAFNL  440


>gi|85858589|ref|YP_460791.1| transposase [Syntrophus aciditrophicus SB]
 gi|85860148|ref|YP_462350.1| transposase [Syntrophus aciditrophicus SB]
 gi|85721680|gb|ABC76623.1| transposase [Syntrophus aciditrophicus SB]
 gi|85723239|gb|ABC78182.1| transposase [Syntrophus aciditrophicus SB]
Length=448

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 37/125 (30%), Positives = 56/125 (45%), Gaps = 5/125 (4%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGE--KRVEDDLHDLGVRTVAIPRKGRPS  62
            N  D   L   +  I T  G+ P  V ADRG+ +  K+ E+     G++ +AIP+KG+  
Sbjct  322  NVADVKTLGRVITGIKTNVGQRPREVAADRGFDQSLKKQENCRRRWGIKRIAIPKKGKTP  381

Query  63   QARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLI  122
                 + +   FR+ +K R   E  I  LK ++  NR    G  G  +      L  N+ 
Sbjct  382  H---PDSKESWFRKALKQRVKIEPVIGHLKSDHRMNRCRYKGAAGDTVNVVWATLAWNMK  438

Query  123  KISSL  127
            KI  L
Sbjct  439  KIVQL  443


>gi|124514705|gb|EAY56217.1| probable transposase [Leptospirillum rubarum]
Length=133

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 38/122 (32%), Positives = 54/122 (45%), Gaps = 3/122 (2%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA  64
            N HD+  LA ++       G  P  + ADRGYG +          +  VAIP+KG+    
Sbjct  11   NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I  67

Query  65   RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKI  124
            R   E    F+R V  R G E  I+ LK+++G  R    G  G ++     +L  N  K 
Sbjct  68   RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKKW  127

Query  125  SS  126
             S
Sbjct  128  VS  129


>gi|124514919|gb|EAY56430.1| probable transposase [Leptospirillum rubarum]
 gi|124515145|gb|EAY56656.1| probable transposase [Leptospirillum rubarum]
 gi|124515151|gb|EAY56662.1| probable transposase [Leptospirillum rubarum]
 gi|124515162|gb|EAY56673.1| probable transposase [Leptospirillum rubarum]
 gi|124515478|gb|EAY56988.1| transposase, IS5 family [Leptospirillum rubarum]
Length=184

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 38/122 (32%), Positives = 54/122 (45%), Gaps = 3/122 (2%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA  64
            N HD+  LA ++       G  P  + ADRGYG +          +  VAIP+KG+    
Sbjct  62   NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I  118

Query  65   RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKI  124
            R   E    F+R V  R G E  I+ LK+++G  R    G  G ++     +L  N  K 
Sbjct  119  RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKKW  178

Query  125  SS  126
             S
Sbjct  179  VS  180


>gi|124515501|gb|EAY57011.1| probable transposase [Leptospirillum rubarum]
Length=236

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 37/119 (32%), Positives = 53/119 (45%), Gaps = 3/119 (2%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA  64
            N HD+  LA ++       G  P  + ADRGYG +          +  VAIP+KG+    
Sbjct  114  NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I  170

Query  65   RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIK  123
            R   E    F+R V  R G E  I+ LK+++G  R    G  G ++     +L  N  K
Sbjct  171  RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKK  229


>gi|124516081|gb|EAY57590.1| putative transposase [Leptospirillum rubarum]
Length=236

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 37/119 (32%), Positives = 53/119 (45%), Gaps = 3/119 (2%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA  64
            N HD+  LA ++       G  P  + ADRGYG +          +  VAIP+KG+    
Sbjct  114  NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I  170

Query  65   RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIK  123
            R   E    F+R V  R G E  I+ LK+++G  R    G  G ++     +L  N  K
Sbjct  171  RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKK  229


>gi|124516354|gb|EAY57862.1| transposase [Leptospirillum rubarum]
Length=455

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 52/116 (45%), Gaps = 3/116 (2%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA  64
            N HD+  LA ++       G  P  + ADRGYG +          +  VAIP+KG+    
Sbjct  333  NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I  389

Query  65   RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            R   E    F+R V  R G E  I+ LK+++G  R    G  G ++     +L  N
Sbjct  390  RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWN  445


>gi|206603356|gb|EDZ39836.1| Transposase [Leptospirillum sp. Group II '5-way CG']
Length=455

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 52/116 (45%), Gaps = 3/116 (2%)

Query  5    NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA  64
            N HD+  LA ++       G  P  + ADRGYG +          +  VAIP+KG+    
Sbjct  333  NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I  389

Query  65   RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN  120
            R   E    F+R V  R G E  I+ LK+++G  R    G  G ++     +L  N
Sbjct  390  RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWN  445



Lambda     K      H
   0.317    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128283502052


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40