BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2961
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610098|ref|NP_217477.1| transposase [Mycobacterium tubercul... 260 4e-68
gi|289751636|ref|ZP_06511014.1| transposase [Mycobacterium tuber... 259 8e-68
gi|111025277|ref|YP_707697.1| transposase [Rhodococcus jostii RH... 205 2e-51
gi|111025371|ref|YP_707791.1| transposase [Rhodococcus jostii RH... 205 2e-51
gi|111026324|ref|YP_708607.1| transposase [Rhodococcus jostii RH... 201 3e-50
gi|258652805|ref|YP_003201961.1| transposase IS4 family protein ... 186 1e-45
gi|308406141|ref|ZP_07495279.2| transposase [Mycobacterium tuber... 179 1e-43
gi|167966936|ref|ZP_02549213.1| transposase [Mycobacterium tuber... 178 2e-43
gi|289449083|ref|ZP_06438827.1| transposase [Mycobacterium tuber... 178 3e-43
gi|15610523|ref|NP_217904.1| transposase [Mycobacterium tubercul... 178 3e-43
gi|308377331|ref|ZP_07668489.1| transposase [Mycobacterium tuber... 177 4e-43
gi|308232447|ref|ZP_07664088.1| transposase [Mycobacterium tuber... 177 5e-43
gi|253799934|ref|YP_003032935.1| transposase [Mycobacterium tube... 171 4e-41
gi|148822243|ref|YP_001286997.1| transposase [Mycobacterium tube... 171 4e-41
gi|15608174|ref|NP_215550.1| transposase [Mycobacterium tubercul... 170 7e-41
gi|344218861|gb|AEM99491.1| transposase [Mycobacterium tuberculo... 168 3e-40
gi|298526868|ref|ZP_07014277.1| transposase [Mycobacterium tuber... 158 2e-37
gi|289747214|ref|ZP_06506592.1| transposase [Mycobacterium tuber... 135 3e-30
gi|289759546|ref|ZP_06518924.1| hypothetical protein TBEG_03027 ... 104 3e-21
gi|83590978|ref|YP_430987.1| transposase IS4 [Moorella thermoace... 102 2e-20
gi|253577715|ref|ZP_04855012.1| transposase [Paenibacillus sp. o... 98.2 3e-19
gi|147677689|ref|YP_001211904.1| hypothetical protein PTH_1354 [... 97.1 8e-19
gi|308205889|gb|ADO19301.1| hypothetical protein Nfla_9401 [Nost... 89.7 1e-16
gi|169830876|ref|YP_001716858.1| putative methyl-accepting chemo... 88.6 3e-16
gi|298251049|ref|ZP_06974853.1| transposase IS4 family protein [... 78.6 3e-13
gi|298248375|ref|ZP_06972180.1| transposase IS4 family protein [... 78.6 3e-13
gi|298241044|ref|ZP_06964851.1| transposase IS4 family protein [... 78.6 3e-13
gi|298248369|ref|ZP_06972174.1| transposase IS4 family protein [... 78.6 3e-13
gi|298248371|ref|ZP_06972176.1| transposase IS4 family protein [... 69.7 1e-10
gi|227821504|ref|YP_002825474.1| putative transposase for insert... 58.9 3e-07
gi|227819871|ref|YP_002823842.1| transposon-related protein [Sin... 58.5 3e-07
gi|13475196|ref|NP_106760.1| transposase [Mesorhizobium loti MAF... 57.0 1e-06
gi|16263346|ref|NP_436139.1| TRm17b transposase fragment [Sinorh... 56.6 1e-06
gi|15966575|ref|NP_386928.1| putative partial transposase for IS... 56.6 1e-06
gi|20804074|emb|CAD31277.1| PUTATIVE TRANSPOSASE FOR INSERTION E... 56.6 1e-06
gi|15966358|ref|NP_386711.1| transposase ISRM17 [Sinorhizobium m... 56.2 2e-06
gi|334317360|ref|YP_004549979.1| transposase IS4 family protein ... 56.2 2e-06
gi|2496742|sp|P55642.1|Y4RI_RHISN RecName: Full=Uncharacterized ... 55.5 2e-06
gi|334320405|ref|YP_004557034.1| transposase IS4 family protein ... 55.5 2e-06
gi|334319413|ref|YP_004551972.1| transposase IS4 family protein ... 55.5 2e-06
gi|116253888|ref|YP_769726.1| transposon-related protein [Rhizob... 55.5 3e-06
gi|120553324|ref|YP_957675.1| transposase, IS4 family protein [M... 52.8 2e-05
gi|298527643|ref|ZP_07015047.1| transposase IS4 family protein [... 50.1 1e-04
gi|85858589|ref|YP_460791.1| transposase [Syntrophus aciditrophi... 47.8 6e-04
gi|124514705|gb|EAY56217.1| probable transposase [Leptospirillum... 45.8 0.002
gi|124514919|gb|EAY56430.1| probable transposase [Leptospirillum... 45.4 0.003
gi|124515501|gb|EAY57011.1| probable transposase [Leptospirillum... 44.7 0.004
gi|124516081|gb|EAY57590.1| putative transposase [Leptospirillum... 44.7 0.004
gi|124516354|gb|EAY57862.1| transposase [Leptospirillum rubarum] 44.7 0.004
gi|206603356|gb|EDZ39836.1| Transposase [Leptospirillum sp. Grou... 44.7 0.005
>gi|15610098|ref|NP_217477.1| transposase [Mycobacterium tuberculosis H37Rv]
gi|31794137|ref|NP_856630.1| transposase [Mycobacterium bovis AF2122/97]
gi|121638842|ref|YP_979066.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
72 more sequence titles
Length=129
Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 128/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+EHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR
Sbjct 1 MEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN
Sbjct 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
Query 121 LIKISSLAA 129
LIKISSLAA
Sbjct 121 LIKISSLAA 129
>gi|289751636|ref|ZP_06511014.1| transposase [Mycobacterium tuberculosis T92]
gi|289692223|gb|EFD59652.1| transposase [Mycobacterium tuberculosis T92]
Length=129
Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 127/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+EHGNPHDAPQLAPAVE+ITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR
Sbjct 1 MEHGNPHDAPQLAPAVEQITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN
Sbjct 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
Query 121 LIKISSLAA 129
LIKISSLAA
Sbjct 121 LIKISSLAA 129
>gi|111025277|ref|YP_707697.1| transposase [Rhodococcus jostii RHA1]
gi|110824256|gb|ABG99539.1| probable transposase [Rhodococcus jostii RHA1]
Length=479
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/129 (76%), Positives = 109/129 (85%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPAV+R+ TRAGRPP TVTADRGYGEK VEDDL DLGVR V IPRKG+
Sbjct 351 VERGNPADAPQLAPAVDRVRTRAGRPPRTVTADRGYGEKAVEDDLRDLGVRHVVIPRKGK 410
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRAEE RP+FRRT+KWRTG EGRIS LKR YGW+R+ ID TEG +IW HG+L HN
Sbjct 411 PSADRRAEEHRPAFRRTIKWRTGVEGRISALKRGYGWDRTRIDSTEGAKIWVGHGVLAHN 470
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 471 LVKISTLAA 479
>gi|111025371|ref|YP_707791.1| transposase [Rhodococcus jostii RHA1]
gi|110824350|gb|ABG99633.1| transposase [Rhodococcus jostii RHA1]
Length=479
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/129 (76%), Positives = 109/129 (85%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPAV+R+ TRAGRPP TVTADRGYGEK VEDDL DLGVR V IPRKG+
Sbjct 351 VERGNPADAPQLAPAVDRVRTRAGRPPRTVTADRGYGEKAVEDDLRDLGVRHVVIPRKGK 410
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRAEE RP+FRRT+KWRTG EGRIS LKR YGW+R+ ID TEG +IW HG+L HN
Sbjct 411 PSADRRAEEHRPAFRRTIKWRTGVEGRISALKRGYGWDRTRIDSTEGAQIWVGHGVLAHN 470
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 471 LVKISTLAA 479
>gi|111026324|ref|YP_708607.1| transposase [Rhodococcus jostii RHA1]
gi|110825167|gb|ABH00449.1| possible transposase [Rhodococcus jostii RHA1]
Length=173
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/129 (76%), Positives = 109/129 (85%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPAV+R+ TRAGRPP TVTADRGYGEK VEDDL DLGVR V IPRKG+
Sbjct 45 VERGNPADAPQLAPAVDRVRTRAGRPPRTVTADRGYGEKAVEDDLRDLGVRHVVIPRKGK 104
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRAEE RP+FRRT+KWRTG EGRIS LKR YGW+R+ ID TEG +IW HG+L HN
Sbjct 105 PSADRRAEEHRPAFRRTIKWRTGVEGRISALKRGYGWDRTRIDSTEGAKIWVGHGVLAHN 164
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 165 LVKISTLAA 173
>gi|258652805|ref|YP_003201961.1| transposase IS4 family protein [Nakamurella multipartita DSM
44233]
gi|258556030|gb|ACV78972.1| transposase IS4 family protein [Nakamurella multipartita DSM
44233]
Length=346
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/129 (71%), Positives = 101/129 (79%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA++RIT R GR P TVTADRGYGE V+ L D GVR V IPRKGR
Sbjct 218 VELGNPPDAPQLAPAIDRITARTGRTPRTVTADRGYGEASVDQQLTDRGVRNVVIPRKGR 277
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
P ARRA E RP+FRRTVKWRTG EGRISTLKR YGW+R+ +D EG R WT GILTHN
Sbjct 278 PGAARRAVEHRPAFRRTVKWRTGCEGRISTLKRGYGWDRTRLDSLEGARTWTGQGILTHN 337
Query 121 LIKISSLAA 129
L+KI++L A
Sbjct 338 LVKIAALTA 346
>gi|308406141|ref|ZP_07495279.2| transposase [Mycobacterium tuberculosis SUMu012]
gi|308364375|gb|EFP53226.1| transposase [Mycobacterium tuberculosis SUMu012]
Length=272
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +
Sbjct 144 VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK 203
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HN
Sbjct 204 PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN 263
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 264 LVKISTLAA 272
>gi|167966936|ref|ZP_02549213.1| transposase [Mycobacterium tuberculosis H37Ra]
gi|253800433|ref|YP_003033434.1| transposase [Mycobacterium tuberculosis KZN 1435]
gi|254552492|ref|ZP_05142939.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
6 more sequence titles
Length=246
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +
Sbjct 118 VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK 177
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HN
Sbjct 178 PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN 237
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 238 LVKISTLAA 246
>gi|289449083|ref|ZP_06438827.1| transposase [Mycobacterium tuberculosis CPHL_A]
gi|289422041|gb|EFD19242.1| transposase [Mycobacterium tuberculosis CPHL_A]
Length=225
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +
Sbjct 97 VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK 156
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HN
Sbjct 157 PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN 216
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 217 LVKISTLAA 225
>gi|15610523|ref|NP_217904.1| transposase [Mycobacterium tuberculosis H37Rv]
gi|15842980|ref|NP_338017.1| IS1560 transposase [Mycobacterium tuberculosis CDC1551]
gi|31794567|ref|NP_857060.1| transposase [Mycobacterium bovis AF2122/97]
41 more sequence titles
Length=225
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +
Sbjct 97 VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK 156
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HN
Sbjct 157 PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN 216
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 217 LVKISTLAA 225
>gi|308377331|ref|ZP_07668489.1| transposase [Mycobacterium tuberculosis SUMu008]
gi|308348260|gb|EFP37111.1| transposase [Mycobacterium tuberculosis SUMu008]
Length=177
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +
Sbjct 49 VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK 108
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HN
Sbjct 109 PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN 168
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 169 LVKISTLAA 177
>gi|308232447|ref|ZP_07664088.1| transposase [Mycobacterium tuberculosis SUMu001]
gi|308370250|ref|ZP_07666902.1| transposase [Mycobacterium tuberculosis SUMu002]
gi|308371330|ref|ZP_07667139.1| transposase [Mycobacterium tuberculosis SUMu003]
17 more sequence titles
Length=170
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/129 (67%), Positives = 99/129 (77%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP DAPQLAPA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +
Sbjct 42 VELGNPADAPQLAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSK 101
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HN
Sbjct 102 PSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHN 161
Query 121 LIKISSLAA 129
L+KIS+LAA
Sbjct 162 LVKISTLAA 170
>gi|253799934|ref|YP_003032935.1| transposase [Mycobacterium tuberculosis KZN 1435]
gi|298524532|ref|ZP_07011941.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308231706|ref|ZP_07413508.2| transposase [Mycobacterium tuberculosis SUMu001]
17 more sequence titles
Length=164
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/129 (66%), Positives = 97/129 (76%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
V+ GNP DAPQLAPAV + RAGR P TVTADRGYGE V+ L ++GV+ V IPRKG+
Sbjct 36 VQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVGVKNVLIPRKGK 95
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R I G EGTR W HG+ HN
Sbjct 96 PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN 155
Query 121 LIKISSLAA 129
L+ IS+L A
Sbjct 156 LVTISALPA 164
>gi|148822243|ref|YP_001286997.1| transposase [Mycobacterium tuberculosis F11]
gi|167968535|ref|ZP_02550812.1| transposase [Mycobacterium tuberculosis H37Ra]
gi|254231326|ref|ZP_04924653.1| hypothetical protein TBCG_01022 [Mycobacterium tuberculosis C]
20 more sequence titles
Length=163
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/129 (66%), Positives = 97/129 (76%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
V+ GNP DAPQLAPAV + RAGR P TVTADRGYGE V+ L ++GV+ V IPRKG+
Sbjct 35 VQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVGVKNVLIPRKGK 94
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R I G EGTR W HG+ HN
Sbjct 95 PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN 154
Query 121 LIKISSLAA 129
L+ IS+L A
Sbjct 155 LVTISALPA 163
>gi|15608174|ref|NP_215550.1| transposase [Mycobacterium tuberculosis H37Rv]
gi|15840464|ref|NP_335501.1| IS1560 transposase [Mycobacterium tuberculosis CDC1551]
gi|31792226|ref|NP_854719.1| transposase [Mycobacterium bovis AF2122/97]
31 more sequence titles
Length=129
Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/129 (65%), Positives = 97/129 (76%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
++ GNP DAPQLAPAV + RAGR P TVTADRGYGE V+ L ++GV+ V IPRKG+
Sbjct 1 MQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVGVKNVLIPRKGK 60
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R I G EGTR W HG+ HN
Sbjct 61 PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN 120
Query 121 LIKISSLAA 129
L+ IS+L A
Sbjct 121 LVTISALPA 129
>gi|344218861|gb|AEM99491.1| transposase [Mycobacterium tuberculosis CTRI-2]
Length=129
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/129 (64%), Positives = 96/129 (75%), Gaps = 0/129 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
++ GNP DAPQLAPAV + RAGR P TVTADRGYGE V+ L ++ V+ V IPRKG+
Sbjct 1 MQQGNPPDAPQLAPAVAWVKKRAGRTPRTVTADRGYGEAAVDQQLTEVAVKNVLIPRKGK 60
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
PSQ RRAEE R +FRRT+KWRTG EGRIS LKR YGW+R I G EGTR W HG+ HN
Sbjct 61 PSQDRRAEEHRKAFRRTIKWRTGCEGRISHLKRGYGWDRGRIGGLEGTRTWVGHGVFAHN 120
Query 121 LIKISSLAA 129
L+ IS+L A
Sbjct 121 LVTISALPA 129
>gi|298526868|ref|ZP_07014277.1| transposase [Mycobacterium tuberculosis 94_M4241A]
gi|298496662|gb|EFI31956.1| transposase [Mycobacterium tuberculosis 94_M4241A]
Length=118
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/118 (65%), Positives = 90/118 (77%), Gaps = 0/118 (0%)
Query 12 LAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQARRAEEQR 71
+APA+ERI+ R GRPP VTADRG G+ VEDDLH LGVR VAIPRK +PS RRA E R
Sbjct 1 MAPAIERISRRTGRPPRAVTADRGCGDASVEDDLHQLGVRNVAIPRKSKPSATRRAFEHR 60
Query 72 PSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKISSLAA 129
+FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R W HG+ HNL+KIS+LAA
Sbjct 61 RAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGARTWCGHGVFAHNLVKISTLAA 118
>gi|289747214|ref|ZP_06506592.1| transposase [Mycobacterium tuberculosis 02_1987]
gi|289687742|gb|EFD55230.1| transposase [Mycobacterium tuberculosis 02_1987]
Length=100
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 0/100 (0%)
Query 30 VTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQARRAEEQRPSFRRTVKWRTGSEGRIS 89
+TADRG G+ VEDDLH LGVR VAIPRK +PS RRA E R +FR +KWRTGSEGRI+
Sbjct 1 MTADRGCGDASVEDDLHQLGVRNVAIPRKSKPSATRRAFEHRRAFRDKIKWRTGSEGRIN 60
Query 90 TLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKISSLAA 129
LKR+YGWNR+ + G G R W HG+ HNL+KIS+LAA
Sbjct 61 HLKRSYGWNRTELTGITGARTWCGHGVFAHNLVKISTLAA 100
>gi|289759546|ref|ZP_06518924.1| hypothetical protein TBEG_03027 [Mycobacterium tuberculosis T85]
gi|289715110|gb|EFD79122.1| hypothetical protein TBEG_03027 [Mycobacterium tuberculosis T85]
Length=80
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/80 (62%), Positives = 60/80 (75%), Gaps = 0/80 (0%)
Query 50 VRTVAIPRKGRPSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTR 109
+R VAIPRK +PS RRA E R +FR +KWRTGSEGRI+ LKR+YGWNR+ + G G R
Sbjct 1 MRNVAIPRKSKPSATRRAFEHRRAFRDKIKWRTGSEGRINHLKRSYGWNRTELTGITGAR 60
Query 110 IWTRHGILTHNLIKISSLAA 129
W HG+ HNL+KIS+LAA
Sbjct 61 TWCGHGVFAHNLVKISTLAA 80
>gi|83590978|ref|YP_430987.1| transposase IS4 [Moorella thermoacetica ATCC 39073]
gi|83573892|gb|ABC20444.1| transposase, IS4 family [Moorella thermoacetica ATCC 39073]
Length=174
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/128 (43%), Positives = 74/128 (58%), Gaps = 1/128 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
V GNP D L AVE PP + ADRG+G + H LGV+ V++PRKG+
Sbjct 48 VLQGNPADDTLLLGAVEDHIKTFNHPPRALAADRGFGGSG-KSGCHQLGVKQVSLPRKGK 106
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
S+ARRA + + F+R +WR G E IS LKR YG RS G EGT W +GIL +N
Sbjct 107 ISKARRAYQLQSWFKRLQRWRAGGEATISLLKRKYGLRRSLSRGYEGTTTWVGYGILAYN 166
Query 121 LIKISSLA 128
L +++++
Sbjct 167 LHRLATMV 174
>gi|253577715|ref|ZP_04855012.1| transposase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251842893|gb|EES70945.1| transposase [Paenibacillus sp. oral taxon 786 str. D14]
Length=457
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/121 (42%), Positives = 67/121 (56%), Gaps = 0/121 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
V GNP D L PAV+ + G+ P V DRG+ K+ E + +LGV+ ++PRKG+
Sbjct 328 VYEGNPSDDELLVPAVQAHIKQFGKAPQAVATDRGFSSKKNETAITELGVKRASLPRKGK 387
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
AR E F+ ++R E +IS LKR YG NRS G G++ W GILTHN
Sbjct 388 KGIARSEYENELWFKDLQRYRAAGEAKISLLKRKYGLNRSRYRGFVGSKCWVGFGILTHN 447
Query 121 L 121
L
Sbjct 448 L 448
>gi|147677689|ref|YP_001211904.1| hypothetical protein PTH_1354 [Pelotomaculum thermopropionicum
SI]
gi|147678361|ref|YP_001212576.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum
SI]
gi|146273786|dbj|BAF59535.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
gi|146274458|dbj|BAF60207.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum
SI]
Length=450
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/119 (43%), Positives = 65/119 (55%), Gaps = 0/119 (0%)
Query 3 HGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPS 62
GNP D L PAVE+ R P V DRG+G + E+ LH LGVR ++ P KGR S
Sbjct 325 QGNPADDGLLIPAVEQHKKRFRSSPSAVATDRGFGSQSNEEALHTLGVRRISSPLKGRKS 384
Query 63 QARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNL 121
+ R E + F+ ++R E +IS LKR YG NRS G G++ W GI HNL
Sbjct 385 KKRMEYEAQLWFKDLQRFRAAGEAKISLLKRKYGLNRSLYRGFTGSKTWVGFGIWVHNL 443
>gi|308205889|gb|ADO19301.1| hypothetical protein Nfla_9401 [Nostoc flagelliforme str. Sunitezuoqi]
Length=180
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/122 (39%), Positives = 66/122 (55%), Gaps = 0/122 (0%)
Query 4 GNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQ 63
GNPHD QL P++++ G P VT DRG + E+ LGV+ V +P+ G S+
Sbjct 45 GNPHDTQQLIPSLDQHLENFGSSPKIVTTDRGVYSQTNENYAQLLGVKEVILPKGGYRSK 104
Query 64 ARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIK 123
R E++ +F++ +W G EGRIS LKR +G R G G W G++ HNL
Sbjct 105 ERIKHERKRNFKKARRWHNGVEGRISFLKRCFGLQRCLYRGELGFCRWVGWGVIAHNLTI 164
Query 124 IS 125
IS
Sbjct 165 IS 166
>gi|169830876|ref|YP_001716858.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169831953|ref|YP_001717935.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169831954|ref|YP_001717936.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169831955|ref|YP_001717937.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169637720|gb|ACA59226.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169638797|gb|ACA60303.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169638798|gb|ACA60304.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
gi|169638799|gb|ACA60305.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus
Desulforudis audaxviator MP104C]
Length=464
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/127 (39%), Positives = 65/127 (52%), Gaps = 0/127 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
V GNP D L P + R GR P DRG+ E L LG+R +++P KG+
Sbjct 337 VMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGK 396
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
S +R E++ FRR +WR G EG IS LKR YG R+ G G R W + +N
Sbjct 397 RSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYN 456
Query 121 LIKISSL 127
L +I+ L
Sbjct 457 LNRIAKL 463
>gi|298251049|ref|ZP_06974853.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
gi|297549053|gb|EFH82920.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=362
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)
Query 6 PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR 65
PH+ Q A+ PP + DRG + GV+ VAIP +G+ SQ +
Sbjct 238 PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ 297
Query 66 RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS 125
RA+E +F+R +WR G EGRI +L+R+YG R G +G + W GI++ NL I+
Sbjct 298 RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA 357
Query 126 S 126
Sbjct 358 Q 358
>gi|298248375|ref|ZP_06972180.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
gi|297551034|gb|EFH84900.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)
Query 6 PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR 65
PH+ Q A+ PP + DRG + GV+ VAIP +G+ SQ +
Sbjct 337 PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ 396
Query 66 RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS 125
RA+E +F+R +WR G EGRI +L+R+YG R G +G + W GI++ NL I+
Sbjct 397 RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA 456
Query 126 S 126
Sbjct 457 Q 457
>gi|298241044|ref|ZP_06964851.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
gi|297554098|gb|EFH87962.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)
Query 6 PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR 65
PH+ Q A+ PP + DRG + GV+ VAIP +G+ SQ +
Sbjct 337 PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ 396
Query 66 RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS 125
RA+E +F+R +WR G EGRI +L+R+YG R G +G + W GI++ NL I+
Sbjct 397 RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA 456
Query 126 S 126
Sbjct 457 Q 457
>gi|298248369|ref|ZP_06972174.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
gi|297551028|gb|EFH84894.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/121 (36%), Positives = 63/121 (53%), Gaps = 0/121 (0%)
Query 6 PHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQAR 65
PH+ Q A+ PP + DRG + GV+ VAIP +G+ SQ +
Sbjct 337 PHEHGQADEALAHHQPLFAHPPRWLVGDRGVHAAGTRERAQAAGVKVVAIPAEGKRSQEQ 396
Query 66 RAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKIS 125
RA+E +F+R +WR G EGRI +L+R+YG R G +G + W GI++ NL I+
Sbjct 397 RAQEHTRAFKRAYRWRAGIEGRIHSLRRDYGLRRCAYHGEDGMQRWIGLGIISSNLRHIA 456
Query 126 S 126
Sbjct 457 Q 457
>gi|298248371|ref|ZP_06972176.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
gi|297551030|gb|EFH84896.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=324
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/103 (41%), Positives = 60/103 (59%), Gaps = 0/103 (0%)
Query 24 GRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQARRAEEQRPSFRRTVKWRTG 83
RPP VT DRG E+ L GV+ +AIP G+ S+ R+A E+ FRR ++R G
Sbjct 218 ARPPHLVTGDRGVHSADTEERLRAAGVKRIAIPAMGKVSEERQALERTRGFRRGYRFRAG 277
Query 84 SEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKISS 126
EGRI++L+R+YGW++ G +G W G+L NL I+
Sbjct 278 IEGRIASLRRDYGWSKCRYHGQDGMERWLGLGVLASNLRHIAQ 320
>gi|227821504|ref|YP_002825474.1| putative transposase for insertion sequence NGRIS-22c [Sinorhizobium
fredii NGR234]
gi|227822034|ref|YP_002826005.1| putative transposase for insertion sequence NGRIS-22b [Sinorhizobium
fredii NGR234]
gi|227823622|ref|YP_002827595.1| putative transposase for insertion sequence NGRIS-22a [Sinorhizobium
fredii NGR234]
gi|36958764|gb|AAQ87232.1| Transposase [Sinorhizobium fredii NGR234]
gi|227340503|gb|ACP24721.1| putative transposase for insertion sequence NGRIS-22c [Sinorhizobium
fredii NGR234]
gi|227341034|gb|ACP25252.1| putative transposase for insertion sequence NGRIS-22b [Sinorhizobium
fredii NGR234]
gi|227342624|gb|ACP26842.1| putative transposase for insertion sequence NGRIS-22a [Sinorhizobium
fredii NGR234]
Length=444
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G PP AD GY + G+R +A +K R
Sbjct 316 IEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKK-R 374
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
R +R+ +R G E IS LKR YG R G + + + ++ +N
Sbjct 375 GLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYN 434
Query 121 LIKISSL 127
L + L
Sbjct 435 LALFARL 441
>gi|227819871|ref|YP_002823842.1| transposon-related protein [Sinorhizobium fredii NGR234]
gi|227338870|gb|ACP23089.1| putative transposon-related protein [Sinorhizobium fredii NGR234]
Length=418
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G PP AD GY + G+R +A +K R
Sbjct 290 IEAGNPTDSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKK-R 348
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
R +R+ +R G E IS LKR YG R G + + + ++ +N
Sbjct 349 GLSIEDMVSSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYN 408
Query 121 LIKISSL 127
L + L
Sbjct 409 LALFARL 415
>gi|13475196|ref|NP_106760.1| transposase [Mesorhizobium loti MAFF303099]
gi|14025947|dbj|BAB52546.1| transposase [Mesorhizobium loti MAFF303099]
Length=291
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (31%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L +ER G PP AD GY + GVR +A +K
Sbjct 163 IEAGNPADSERLLLMLERHIAFYGEPPRQAAADGGYASRANLRQAKAWGVRDMAFHKKS- 221
Query 61 PSQARRAEEQRPS---FRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
A R E+ S +R+ +R G E IS LKR YG R G + + ++
Sbjct 222 ---ALRIEDMVSSRWVYRKLRNFRAGIEASISCLKRAYGLARCTWRGLNHFKAYVWSSVV 278
Query 118 THNLIKISSL 127
+NL + L
Sbjct 279 AYNLALFTRL 288
>gi|16263346|ref|NP_436139.1| TRm17b transposase fragment [Sinorhizobium meliloti 1021]
gi|14524028|gb|AAK65551.1| TRm17b transposase fragment [Sinorhizobium meliloti 1021]
Length=168
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G P AD GY + GVR +A +K
Sbjct 40 IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKK-- 97
Query 61 PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
R E+ R +R+ +R G E IS LKR YG R G + + + ++
Sbjct 98 --SGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV 155
Query 118 THNLIKISSL 127
+NL + L
Sbjct 156 AYNLALFARL 165
>gi|15966575|ref|NP_386928.1| putative partial transposase for ISRM17 protein [Sinorhizobium
meliloti 1021]
gi|15075846|emb|CAC47401.1| Putative partial transposase for ISRm17 protein [Sinorhizobium
meliloti 1021]
Length=174
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G P AD GY + GVR +A +K
Sbjct 46 IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKK-- 103
Query 61 PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
R E+ R +R+ +R G E IS LKR YG R G + + + ++
Sbjct 104 --SGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV 161
Query 118 THNLIKISSL 127
+NL + L
Sbjct 162 AYNLALFARL 171
>gi|20804074|emb|CAD31277.1| PUTATIVE TRANSPOSASE FOR INSERTION ELEMENT PROTEIN [Mesorhizobium
loti R7A]
Length=444
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (31%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L +ER G PP AD GY + GVR +A +K
Sbjct 316 IEAGNPADSERLLLMLERHIAFYGEPPRQAAADGGYASRPNLRQAKAWGVRDMAFHKKS- 374
Query 61 PSQARRAEEQRPS---FRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
A R E+ S +R+ +R G E IS LKR YG R G + + ++
Sbjct 375 ---ALRIEDMVSSRWVYRKLRNFRAGIEASISCLKRAYGLARCTWRGLNHFKAYVWSSVV 431
Query 118 THNLIKISSL 127
+NL + L
Sbjct 432 AYNLALFTRL 441
>gi|15966358|ref|NP_386711.1| transposase ISRM17 [Sinorhizobium meliloti 1021]
gi|15966866|ref|NP_387219.1| transposase [Sinorhizobium meliloti 1021]
gi|15075629|emb|CAC47184.1| Putative transposase for ISRm17 protein [Sinorhizobium meliloti
1021]
gi|15076138|emb|CAC47692.1| Putative transposase for insertion sequence ISRm17 [Sinorhizobium
meliloti 1021]
gi|333814851|gb|AEG07519.1| transposase IS4 family protein [Sinorhizobium meliloti BL225C]
gi|333814992|gb|AEG07660.1| transposase IS4 family protein [Sinorhizobium meliloti BL225C]
Length=444
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G P AD GY + GVR +A +K
Sbjct 316 IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS- 374
Query 61 PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
R E+ R +R+ +R G E IS LKR YG R G + + + ++
Sbjct 375 ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV 431
Query 118 THNLIKISSL 127
+NL + L
Sbjct 432 AYNLALFARL 441
>gi|334317360|ref|YP_004549979.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
gi|334318742|ref|YP_004551301.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
gi|334319156|ref|YP_004551715.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
11 more sequence titles
Length=444
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G P AD GY + GVR +A +K
Sbjct 316 IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS- 374
Query 61 PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
R E+ R +R+ +R G E IS LKR YG R G + + + ++
Sbjct 375 ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV 431
Query 118 THNLIKISSL 127
+NL + L
Sbjct 432 AYNLALFARL 441
>gi|2496742|sp|P55642.1|Y4RI_RHISN RecName: Full=Uncharacterized protein y4rI
Length=390
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G PP AD GY + G+R +A +K R
Sbjct 262 IEAGNPADSERLLPMLERHIAFYGEPPRQAAADGGYASRENLSGAKARGIRDMAFHKK-R 320
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
+ R +R+ +R G + IS LKR YG R G + + + + +N
Sbjct 321 GLKIEDMVRSRWVYRKLRNFRAGIDAGISCLKRAYGLGRCTWRGLDHFKAYVWSSAVAYN 380
Query 121 LIKISSL 127
L + L
Sbjct 381 LSLFARL 387
>gi|334320405|ref|YP_004557034.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
gi|334098144|gb|AEG56154.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
Length=447
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G P AD GY + GVR +A +K
Sbjct 319 IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS- 377
Query 61 PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
R E+ R +R+ +R G E IS LKR YG R G + + + ++
Sbjct 378 ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVV 434
Query 118 THNLIKISSL 127
+NL + L
Sbjct 435 AYNLALFARL 444
>gi|334319413|ref|YP_004551972.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
gi|334099840|gb|AEG57849.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
Length=444
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (44%), Gaps = 7/130 (5%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D+ +L P +ER G P AD GY + GVR +A +K
Sbjct 316 IEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKS- 374
Query 61 PSQARRAEEQ---RPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGIL 117
R E+ R +R+ +R G E IS LKR YG R G + + + ++
Sbjct 375 ---GLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYDWSSVV 431
Query 118 THNLIKISSL 127
+NL + L
Sbjct 432 AYNLALFARL 441
>gi|116253888|ref|YP_769726.1| transposon-related protein [Rhizobium leguminosarum bv. viciae
3841]
gi|116254976|ref|YP_770811.1| putative transposase [Rhizobium leguminosarum bv. viciae 3841]
gi|115258536|emb|CAK09640.1| putative transposon-related protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|115259624|emb|CAK11605.1| putative transposase [Rhizobium leguminosarum bv. viciae 3841]
Length=444
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (30%), Positives = 56/127 (45%), Gaps = 1/127 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
VE GNP D+ +L P +ER G P AD GY + G+R +A +K
Sbjct 316 VEAGNPADSERLQPMLERHIAFYGAAPRQAAADGGYASRTNLSQAKAWGIRDMAFHKKC- 374
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
+ + R +R+ +R G E IS LKR YG R G + + + ++ +N
Sbjct 375 GLKIEDMVKSRWVYRKLRNFRAGIEAGISCLKRAYGLGRCTWRGLDHFKAYVWSSVVAYN 434
Query 121 LIKISSL 127
L + L
Sbjct 435 LALFARL 441
>gi|120553324|ref|YP_957675.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
gi|120554139|ref|YP_958490.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
gi|120554717|ref|YP_959068.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
gi|120555302|ref|YP_959653.1| transposase, IS4 family protein [Marinobacter aquaeolei VT8]
gi|120323173|gb|ABM17488.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
gi|120323988|gb|ABM18303.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
gi|120324566|gb|ABM18881.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
gi|120325151|gb|ABM19466.1| transposase, IS4 family [Marinobacter aquaeolei VT8]
Length=446
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/127 (26%), Positives = 61/127 (49%), Gaps = 1/127 (0%)
Query 1 VEHGNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGR 60
+E GNP D P ++ + G+ P +V AD GY + +G++ V +
Sbjct 318 IEEGNPGDKTLFLPVLDYHRSVLGKLPRSVVADGGYASQANVAAGRAMGLKHVVFHKPVG 377
Query 61 PSQARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
S + + +F+ +R G EG IS LKR +G ++ G +G + + L++N
Sbjct 378 VSLTAMGVKSK-TFKALRHFRAGIEGNISELKRAFGAAKAMWKGHDGFKAFVWASALSYN 436
Query 121 LIKISSL 127
L++++ L
Sbjct 437 LVRLARL 443
>gi|298527643|ref|ZP_07015047.1| transposase IS4 family protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511295|gb|EFI35197.1| transposase IS4 family protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=446
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/118 (27%), Positives = 53/118 (45%), Gaps = 1/118 (0%)
Query 4 GNPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQ 63
GNP+D+ + VER + P + D G+ + D + GV+ V +K R
Sbjct 324 GNPNDSSLVEEIVERQKKTLDKTPRKIAMDGGFASQNSLDKAKEAGVKDVCFAKK-RNLN 382
Query 64 ARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNL 121
+ +++ +R G E IST+KR +G +R G EG + + ++ NL
Sbjct 383 ILDMVKSSYVYKKLRNFRAGIEAIISTMKRAFGLDRCTWQGWEGFKQYVWSSVVAFNL 440
>gi|85858589|ref|YP_460791.1| transposase [Syntrophus aciditrophicus SB]
gi|85860148|ref|YP_462350.1| transposase [Syntrophus aciditrophicus SB]
gi|85721680|gb|ABC76623.1| transposase [Syntrophus aciditrophicus SB]
gi|85723239|gb|ABC78182.1| transposase [Syntrophus aciditrophicus SB]
Length=448
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/125 (30%), Positives = 56/125 (45%), Gaps = 5/125 (4%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGE--KRVEDDLHDLGVRTVAIPRKGRPS 62
N D L + I T G+ P V ADRG+ + K+ E+ G++ +AIP+KG+
Sbjct 322 NVADVKTLGRVITGIKTNVGQRPREVAADRGFDQSLKKQENCRRRWGIKRIAIPKKGKTP 381
Query 63 QARRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLI 122
+ + FR+ +K R E I LK ++ NR G G + L N+
Sbjct 382 H---PDSKESWFRKALKQRVKIEPVIGHLKSDHRMNRCRYKGAAGDTVNVVWATLAWNMK 438
Query 123 KISSL 127
KI L
Sbjct 439 KIVQL 443
>gi|124514705|gb|EAY56217.1| probable transposase [Leptospirillum rubarum]
Length=133
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (32%), Positives = 54/122 (45%), Gaps = 3/122 (2%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA 64
N HD+ LA ++ G P + ADRGYG + + VAIP+KG+
Sbjct 11 NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I 67
Query 65 RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKI 124
R E F+R V R G E I+ LK+++G R G G ++ +L N K
Sbjct 68 RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKKW 127
Query 125 SS 126
S
Sbjct 128 VS 129
>gi|124514919|gb|EAY56430.1| probable transposase [Leptospirillum rubarum]
gi|124515145|gb|EAY56656.1| probable transposase [Leptospirillum rubarum]
gi|124515151|gb|EAY56662.1| probable transposase [Leptospirillum rubarum]
gi|124515162|gb|EAY56673.1| probable transposase [Leptospirillum rubarum]
gi|124515478|gb|EAY56988.1| transposase, IS5 family [Leptospirillum rubarum]
Length=184
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (32%), Positives = 54/122 (45%), Gaps = 3/122 (2%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA 64
N HD+ LA ++ G P + ADRGYG + + VAIP+KG+
Sbjct 62 NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I 118
Query 65 RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIKI 124
R E F+R V R G E I+ LK+++G R G G ++ +L N K
Sbjct 119 RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKKW 178
Query 125 SS 126
S
Sbjct 179 VS 180
>gi|124515501|gb|EAY57011.1| probable transposase [Leptospirillum rubarum]
Length=236
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/119 (32%), Positives = 53/119 (45%), Gaps = 3/119 (2%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA 64
N HD+ LA ++ G P + ADRGYG + + VAIP+KG+
Sbjct 114 NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I 170
Query 65 RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIK 123
R E F+R V R G E I+ LK+++G R G G ++ +L N K
Sbjct 171 RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKK 229
>gi|124516081|gb|EAY57590.1| putative transposase [Leptospirillum rubarum]
Length=236
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/119 (32%), Positives = 53/119 (45%), Gaps = 3/119 (2%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA 64
N HD+ LA ++ G P + ADRGYG + + VAIP+KG+
Sbjct 114 NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I 170
Query 65 RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHNLIK 123
R E F+R V R G E I+ LK+++G R G G ++ +L N K
Sbjct 171 RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWNTKK 229
>gi|124516354|gb|EAY57862.1| transposase [Leptospirillum rubarum]
Length=455
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 52/116 (45%), Gaps = 3/116 (2%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA 64
N HD+ LA ++ G P + ADRGYG + + VAIP+KG+
Sbjct 333 NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I 389
Query 65 RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
R E F+R V R G E I+ LK+++G R G G ++ +L N
Sbjct 390 RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWN 445
>gi|206603356|gb|EDZ39836.1| Transposase [Leptospirillum sp. Group II '5-way CG']
Length=455
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 52/116 (45%), Gaps = 3/116 (2%)
Query 5 NPHDAPQLAPAVERITTRAGRPPGTVTADRGYGEKRVEDDLHDLGVRTVAIPRKGRPSQA 64
N HD+ LA ++ G P + ADRGYG + + VAIP+KG+
Sbjct 333 NRHDSTTLADSLTGWEEATGGLPTALAADRGYGTQDKNTPPALSRIPKVAIPKKGK---I 389
Query 65 RRAEEQRPSFRRTVKWRTGSEGRISTLKRNYGWNRSCIDGTEGTRIWTRHGILTHN 120
R E F+R V R G E I+ LK+++G R G G ++ +L N
Sbjct 390 RGPLEHTRWFKRLVASRAGIEAVIAHLKQDHGMGRCRYKGFSGDQMNVSWAVLAWN 445
Lambda K H
0.317 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128283502052
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40