BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2986c
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacteri... 384 4e-105
gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein... 382 1e-104
gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetica... 223 1e-56
gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N... 205 4e-51
gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU ho... 204 5e-51
gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium b... 204 7e-51
gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacteriu... 201 4e-50
gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacteriu... 201 4e-50
gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [M... 201 4e-50
gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacteriu... 201 4e-50
gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacteriu... 201 6e-50
gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like p... 201 6e-50
gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacteriu... 201 6e-50
gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_0655... 200 1e-49
gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacteriu... 199 3e-49
gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium... 197 7e-49
gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobact... 196 2e-48
gi|120403129|ref|YP_952958.1| histone family protein DNA-binding... 195 3e-48
gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacter... 194 8e-48
gi|145224804|ref|YP_001135482.1| histone family protein DNA-bind... 194 9e-48
gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. pa... 193 1e-47
gi|336459118|gb|EGO38066.1| bacterial nucleoid DNA-binding prote... 193 1e-47
gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacter... 191 8e-47
gi|342858187|ref|ZP_08714842.1| DNA-binding protein HU [Mycobact... 190 1e-46
gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding p... 189 2e-46
gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobac... 188 6e-46
gi|296140540|ref|YP_003647783.1| histone family protein DNA-bind... 186 3e-45
gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacteriu... 184 6e-45
gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus... 180 1e-43
gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodoco... 179 2e-43
gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodoco... 179 2e-43
gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus j... 179 2e-43
gi|343926838|ref|ZP_08766331.1| DNA-binding protein HU [Gordonia... 175 4e-42
gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-bind... 174 9e-42
gi|254819110|ref|ZP_05224111.1| DNA-binding protein HU [Mycobact... 173 1e-41
gi|333991329|ref|YP_004523943.1| DNA-binding protein HU [Mycobac... 166 2e-39
gi|326381558|ref|ZP_08203252.1| histone family protein DNA-bindi... 149 4e-34
gi|291302449|ref|YP_003513727.1| histone family protein DNA-bind... 126 2e-27
gi|256379997|ref|YP_003103657.1| histone family protein DNA-bind... 122 3e-26
gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Ki... 122 3e-26
gi|319951158|ref|ZP_08025003.1| histone family protein DNA-bindi... 122 3e-26
gi|134102579|ref|YP_001108240.1| histone-like DNA binding protei... 121 7e-26
gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-bindin... 115 4e-24
gi|300783647|ref|YP_003763938.1| DNA-binding protein HU-beta [Am... 114 7e-24
gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Am... 114 9e-24
gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs ... 113 1e-23
gi|302524984|ref|ZP_07277326.1| hypothetical protein SSMG_01366 ... 113 2e-23
gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptom... 113 2e-23
gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Strept... 113 2e-23
gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-bindin... 112 3e-23
>gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Rv]
gi|15842542|ref|NP_337579.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
CDC1551]
gi|31794162|ref|NP_856655.1| DNA-binding protein HU [Mycobacterium bovis AF2122/97]
73 more sequence titles
Length=214
Score = 384 bits (987), Expect = 4e-105, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA 120
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA 120
Query 121 KKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKAS 180
KKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKAS
Sbjct 121 KKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKAS 180
Query 181 VRKAATKAPAKKAAAKRPATKAPAKKATARRGRK 214
VRKAATKAPAKKAAAKRPATKAPAKKATARRGRK
Sbjct 181 VRKAATKAPAKKAAAKRPATKAPAKKATARRGRK 214
>gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
K85]
gi|289540124|gb|EFD44702.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
K85]
Length=214
Score = 382 bits (982), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 213/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA 120
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA 120
Query 121 KKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKAS 180
KKATKAAKKAATKAPA+KAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKAS
Sbjct 121 KKATKAAKKAATKAPAKKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKAS 180
Query 181 VRKAATKAPAKKAAAKRPATKAPAKKATARRGRK 214
VRKAATKAPAKKAAAKRPATKAPAKKATARRGRK
Sbjct 181 VRKAATKAPAKKAAAKRPATKAPAKKATARRGRK 214
>gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186 [Mycobacterium
tuberculosis SUMu004]
gi|308333643|gb|EFP22494.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186 [Mycobacterium
tuberculosis SUMu004]
Length=109
Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
>gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N Terminal Region Containing
The Dimerization Domain And Dna Binding Domain Of Hu
Protein(Histone Like Protein-Dna Binding) From Mycobacterium
Tuberculosis [h37rv]
gi|222447027|pdb|3C4I|B Chain B, Crystal Structure Analysis Of N Terminal Region Containing
The Dimerization Domain And Dna Binding Domain Of Hu
Protein(Histone Like Protein-Dna Binding) From Mycobacterium
Tuberculosis [h37rv]
Length=99
Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEG 99
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEG
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEG 99
>gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU homolog hupB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224991359|ref|YP_002646048.1| putative DNA-binding protein HU homolog [Mycobacterium bovis
BCG str. Tokyo 172]
gi|4996103|dbj|BAA78330.1| MDP1 [Mycobacterium bovis]
gi|121494515|emb|CAL72996.1| Probable DNA-binding protein HU homolog hupB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774474|dbj|BAH27280.1| putative DNA-binding protein HU homolog [Mycobacterium bovis
BCG str. Tokyo 172]
gi|264669723|gb|ACY72210.1| laminin-binding histone-like protein [Mycobacterium bovis BCG]
gi|341602906|emb|CCC65584.1| probable DNA-binding protein HU homolog hupB [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=205
Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
>gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium bovis]
Length=205
Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
>gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacterium ulcerans]
Length=211
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacterium ulcerans]
Length=220
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [Mycobacterium marinum M]
gi|62632029|gb|AAX89119.1| laminin-binding protein [Mycobacterium ulcerans]
gi|183175067|gb|ACC40177.1| DNA-binding protein Hu, HupB [Mycobacterium marinum M]
Length=220
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacterium ulcerans]
Length=211
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacterium ulcerans]
Length=220
Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like protein [Mycobacterium ulcerans
Agy99]
gi|62632019|gb|AAX89114.1| laminin-binding protein [Mycobacterium ulcerans]
gi|118569666|gb|ABL04417.1| DNA-binding protein Hu HupB-like protein [Mycobacterium ulcerans
Agy99]
Length=229
Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacterium ulcerans]
Length=229
Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVMAS 109
>gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_06550 [Mycobacterium kansasii ATCC
12478]
Length=217
Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/109 (98%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVV+GAQ+LPAEGPAVKRGVG S
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQKLPAEGPAVKRGVGTS 109
>gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacterium ulcerans]
Length=229
Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/106 (100%), Positives = 106/106 (100%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
>gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium leprae TN]
gi|221230371|ref|YP_002503787.1| putative histone-like protein [Mycobacterium leprae Br4923]
gi|6014920|sp|O33125.1|DBH_MYCLE RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
kDa laminin-2-binding protein; AltName: Full=Histone-like
protein; Short=Hlp
gi|2414560|emb|CAB16449.1| histone-like DNA binding protein [Mycobacterium leprae]
gi|6009551|dbj|BAA84958.1| 21-kDa laminin-2-binding protein [Mycobacterium leprae]
gi|13093447|emb|CAC30636.1| probable histone-like protein [Mycobacterium leprae]
gi|219933478|emb|CAR71778.1| probable histone-like protein [Mycobacterium leprae Br4923]
Length=200
Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/109 (97%), Positives = 106/109 (98%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAVV+GAQRLP EGPAVKRGV S
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQRLPLEGPAVKRGVATS 109
>gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894254|gb|EFG74011.1| histone family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=211
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/110 (96%), Positives = 107/110 (98%), Gaps = 0/110 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKL +DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASA 110
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP+EGPAVKRGV AS
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPSEGPAVKRGVVASG 110
>gi|120403129|ref|YP_952958.1| histone family protein DNA-binding protein [Mycobacterium vanbaalenii
PYR-1]
gi|119955947|gb|ABM12952.1| bacterial nucleoid protein Hbs [Mycobacterium vanbaalenii PYR-1]
Length=212
Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/110 (95%), Positives = 109/110 (99%), Gaps = 0/110 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLGSDRRQATAAVENVVDTIVRAVHKG+SVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASA 110
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQ+LPAEGPAVKRGV A++
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQKLPAEGPAVKRGVTATS 110
>gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacterium avium 104]
gi|118166892|gb|ABK67789.1| DNA-binding protein HU [Mycobacterium avium 104]
Length=217
Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/106 (98%), Positives = 105/106 (99%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKL +DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 6 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 65
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP+EGPAVKRGV
Sbjct 66 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPSEGPAVKRGV 111
>gi|145224804|ref|YP_001135482.1| histone family protein DNA-binding protein [Mycobacterium gilvum
PYR-GCK]
gi|315445134|ref|YP_004078013.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
gi|145217290|gb|ABP46694.1| bacterial nucleoid protein Hbs [Mycobacterium gilvum PYR-GCK]
gi|315263437|gb|ADU00179.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
Length=217
Score = 194 bits (492), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/106 (98%), Positives = 106/106 (100%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLGSDRRQATAAVENVVDTIVRAVHKG+SVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQ+LPAEGPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQKLPAEGPAVKRGV 106
>gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254776259|ref|ZP_05217775.1| DNA-binding protein HU [Mycobacterium avium subsp. avium ATCC
25291]
gi|41397942|gb|AAS05572.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|293652258|gb|ADE60770.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|293652260|gb|ADE60771.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
paratuberculosis]
gi|293652262|gb|ADE60772.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
paratuberculosis]
gi|293652264|gb|ADE60773.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
avium]
gi|293652266|gb|ADE60774.1| laminin-binding histone-like protein [Mycobacterium avium]
Length=212
Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/106 (98%), Positives = 105/106 (99%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKL +DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP+EGPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPSEGPAVKRGV 106
>gi|336459118|gb|EGO38066.1| bacterial nucleoid DNA-binding protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=203
Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/106 (98%), Positives = 105/106 (99%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKL +DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP+EGPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPSEGPAVKRGV 106
>gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
gi|14194641|sp|Q9ZHC5.1|DBH_MYCS2 RecName: Full=DNA-binding protein HU homolog; AltName: Full=Histone-like
protein; Short=Hlp
gi|3930569|gb|AAD13809.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
gi|67515139|gb|AAY68087.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
gi|118172626|gb|ABK73522.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
Length=208
Score = 191 bits (484), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/109 (93%), Positives = 106/109 (98%), Gaps = 0/109 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT K+G+DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGAS 109
RNPRTGETVKVKPTSVPAFRPGAQFKAV+SGAQ+LPA+GPAVKRGV A
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAQKLPADGPAVKRGVTAG 109
>gi|342858187|ref|ZP_08714842.1| DNA-binding protein HU [Mycobacterium colombiense CECT 3035]
gi|342133891|gb|EGT87071.1| DNA-binding protein HU [Mycobacterium colombiense CECT 3035]
Length=218
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/111 (92%), Positives = 106/111 (96%), Gaps = 0/111 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT KL +DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 6 MNKAELIDVLTTKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 65
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAA 111
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP++GPAVKRGV A +
Sbjct 66 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPSDGPAVKRGVVAGSG 116
>gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding protein [Nocardia farcinica
IFM 10152]
gi|54017689|dbj|BAD59059.1| putative histone-like DNA-binding protein [Nocardia farcinica
IFM 10152]
Length=232
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/108 (87%), Positives = 100/108 (93%), Gaps = 0/108 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLG+DRR ATAAVE+VVDTIVRAVHKG SVTITGFGVFEQR+RA RVA
Sbjct 1 MNKAELIDVLTEKLGTDRRTATAAVEHVVDTIVRAVHKGQSVTITGFGVFEQRKRAPRVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGA 108
RNPRTGETVKVK TSVPAFRPGAQFKAV++G Q+L A GPAVKRGV A
Sbjct 61 RNPRTGETVKVKATSVPAFRPGAQFKAVIAGKQKLAATGPAVKRGVNA 108
>gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobacterium abscessus ATCC 19977]
gi|169242340|emb|CAM63368.1| DNA-binding protein HU homolog (Histone-like) [Mycobacterium
abscessus]
Length=207
Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/105 (95%), Positives = 103/105 (99%), Gaps = 0/105 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLTQKLGSDRRQATAAVE+VVDTIVR VHKG+SVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTQKLGSDRRQATAAVEHVVDTIVRTVHKGESVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRG 105
RNPRTGETVKVKPTSVP FRPGAQFKAVVSGAQ+LPA+GPAVKRG
Sbjct 61 RNPRTGETVKVKPTSVPTFRPGAQFKAVVSGAQKLPADGPAVKRG 105
>gi|296140540|ref|YP_003647783.1| histone family protein DNA-binding protein [Tsukamurella paurometabola
DSM 20162]
gi|296028674|gb|ADG79444.1| histone family protein DNA-binding protein [Tsukamurella paurometabola
DSM 20162]
Length=235
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/104 (86%), Positives = 97/104 (94%), Gaps = 0/104 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELI+ LT+KLG+DRR A AAVE +VDTIVRAVH GDSVTITGFGVFEQR+RAARVA
Sbjct 1 MNKAELIEELTEKLGTDRRTAGAAVEAIVDTIVRAVHAGDSVTITGFGVFEQRKRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKR 104
RNPRTGETVKVKPTSVPAFRPGAQFKAV+SGA +LPA GPAV+R
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAAKLPASGPAVRR 104
>gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacterium sp. MCS]
gi|119868006|ref|YP_937958.1| nucleoid protein Hbs [Mycobacterium sp. KMS]
gi|126434491|ref|YP_001070182.1| nucleoid protein Hbs [Mycobacterium sp. JLS]
gi|108769310|gb|ABG08032.1| bacterial nucleoid protein Hbs [Mycobacterium sp. MCS]
gi|119694095|gb|ABL91168.1| bacterial nucleoid protein Hbs [Mycobacterium sp. KMS]
gi|126234291|gb|ABN97691.1| bacterial nucleoid protein Hbs [Mycobacterium sp. JLS]
Length=225
Score = 184 bits (468), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/106 (92%), Positives = 102/106 (97%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELID LT K+G+DRRQAT AVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDALTTKMGTDRRQATEAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKA+VSGAQ+L +EGPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAIVSGAQKLASEGPAVKRGV 106
>gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus erythropolis SK121]
gi|229319681|gb|EEN85513.1| DNA-binding protein [Rhodococcus erythropolis SK121]
Length=183
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/106 (90%), Positives = 102/106 (97%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLGSDRR AT AVE+VVDTIVRAVH+G+SVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAV++G Q+LPA GPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRGV 106
>gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodococcus erythropolis PR4]
gi|226185014|dbj|BAH33118.1| putative DNA-binding protein HU [Rhodococcus erythropolis PR4]
Length=228
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/106 (90%), Positives = 102/106 (97%), Gaps = 0/106 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLGSDRR AT AVE+VVDTIVRAVH+G+SVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
RNPRTGETVKVKPTSVPAFRPGAQFKAV++G Q+LPA GPAVKRGV
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRGV 106
>gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodococcus opacus B4]
gi|226244451|dbj|BAH54799.1| putative DNA-binding protein HU [Rhodococcus opacus B4]
Length=231
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/105 (90%), Positives = 101/105 (97%), Gaps = 0/105 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLG+DRR AT AVE+VVDTIVRAVH+GDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRG 105
RNPRTGETVKVKPTSVPAFRPGAQFKAV++G Q+LPA GPAVKRG
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRG 105
>gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus jostii RHA1]
gi|110822990|gb|ABG98274.1| DNA-binding protein [Rhodococcus jostii RHA1]
Length=230
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/105 (90%), Positives = 101/105 (97%), Gaps = 0/105 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLG+DRR AT AVE+VVDTIVRAVH+GDSVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRG 105
RNPRTGETVKVKPTSVPAFRPGAQFKAV++G Q+LPA GPAVKRG
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRG 105
>gi|343926838|ref|ZP_08766331.1| DNA-binding protein HU [Gordonia alkanivorans NBRC 16433]
gi|343763198|dbj|GAA13257.1| DNA-binding protein HU [Gordonia alkanivorans NBRC 16433]
Length=208
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/107 (82%), Positives = 96/107 (90%), Gaps = 0/107 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELID LT+KL +DR+ AT AVE VVDTIVRAVHKG+SVTITGFGVFE+R+RA RVA
Sbjct 1 MNKAELIDELTKKLDADRKTATEAVELVVDTIVRAVHKGESVTITGFGVFEKRKRAPRVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVG 107
RNPRTGETVKV+ TSVPAFRPGAQFKAVV+G Q+L A GPAVKRG G
Sbjct 61 RNPRTGETVKVRATSVPAFRPGAQFKAVVAGKQKLAASGPAVKRGSG 107
>gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-binding protein hupb [Rhodococcus
equi 103S]
gi|325675901|ref|ZP_08155585.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
gi|311889820|emb|CBH49137.1| histone-like bacterial DNA-binding protein HupB [Rhodococcus
equi 103S]
gi|325553872|gb|EGD23550.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
Length=242
Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/105 (86%), Positives = 100/105 (96%), Gaps = 0/105 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELIDVLT+KLG+DRR A+ AVE+VVDTIVRAVH G+SVTITGFGVFEQRRRAARVA
Sbjct 1 MNKAELIDVLTEKLGTDRRTASEAVEHVVDTIVRAVHAGESVTITGFGVFEQRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRG 105
RNPRTGETVKVKPTSVPAFRPGAQFKA+++G Q+LP+ GPAVKRG
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKALIAGGQKLPSSGPAVKRG 105
>gi|254819110|ref|ZP_05224111.1| DNA-binding protein HU [Mycobacterium intracellulare ATCC 13950]
Length=207
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/98 (95%), Positives = 97/98 (99%), Gaps = 0/98 (0%)
Query 9 VLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGET 68
+LTQKL +DRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGET
Sbjct 1 MLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGET 60
Query 69 VKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGV 106
VKVKPTSVPAFRPGAQFKAVVSGAQRLP++GPAVKRGV
Sbjct 61 VKVKPTSVPAFRPGAQFKAVVSGAQRLPSDGPAVKRGV 98
>gi|333991329|ref|YP_004523943.1| DNA-binding protein HU [Mycobacterium sp. JDM601]
gi|333487297|gb|AEF36689.1| DNA-binding protein HU [Mycobacterium sp. JDM601]
Length=231
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/107 (84%), Positives = 100/107 (94%), Gaps = 0/107 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELI+VLT++L +DRR AT AVE+ V+ IVRAVHKG+SVTITGFGVFE+RRRAARVA
Sbjct 1 MNKAELIEVLTKELDTDRRSATEAVEHFVNAIVRAVHKGESVTITGFGVFERRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVG 107
RNPRTGETVKVKPTSVPAFRPGAQFKA+VSGAQR+P+EG AVKRG G
Sbjct 61 RNPRTGETVKVKPTSVPAFRPGAQFKAIVSGAQRVPSEGLAVKRGAG 107
>gi|326381558|ref|ZP_08203252.1| histone family protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326199805|gb|EGD56985.1| histone family protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
Length=239
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/104 (77%), Positives = 93/104 (90%), Gaps = 0/104 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELI+ LT++L +DR+ AT VE V+DTIVRAV+KG+SVTITGFGVFE+RRRAARVA
Sbjct 1 MNKAELIEELTKRLDADRKTATNFVEQVIDTIVRAVNKGESVTITGFGVFEKRRRAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKR 104
RNPRTGETVKVK TS+PAFRPGAQFKA+VSG Q+L + PAVKR
Sbjct 61 RNPRTGETVKVKATSIPAFRPGAQFKAIVSGKQKLKSGQPAVKR 104
>gi|291302449|ref|YP_003513727.1| histone family protein DNA-binding protein [Stackebrandtia nassauensis
DSM 44728]
gi|290571669|gb|ADD44634.1| histone family protein DNA-binding protein [Stackebrandtia nassauensis
DSM 44728]
Length=185
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/168 (49%), Positives = 106/168 (64%), Gaps = 24/168 (14%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAE ID L + LG DR+ A A++ +++ I RAV KG+ V+ GFGVFE+R+RAAR+A
Sbjct 1 MNKAEFIDALVEHLG-DRKTALKALDAMLEEIQRAVSKGEKVSFAGFGVFEKRQRAARMA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPA 120
RNPRTGE V+VK T VPAFRPG FK +V+G +++P KR G KK+ A
Sbjct 60 RNPRTGEAVRVKKTVVPAFRPGQGFKELVTGEKKMP------KRSTG--------KKSTA 105
Query 121 KKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKV 168
+K T A APA+K+ T+ KAA K + A KA KS K+V
Sbjct 106 RKTT-----AKQTAPAKKSTTR----KAAAKKTVRTASKAAKSVTKRV 144
>gi|256379997|ref|YP_003103657.1| histone family protein DNA-binding protein [Actinosynnema mirum
DSM 43827]
gi|255924300|gb|ACU39811.1| histone family protein DNA-binding protein [Actinosynnema mirum
DSM 43827]
Length=285
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/96 (68%), Positives = 81/96 (85%), Gaps = 1/96 (1%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+LI+ L ++LG D++ A AAV+ +VD IVR+VHKG+ V ITGFGVFE+R RAAR A
Sbjct 1 MNKAQLIEALAERLG-DKKNAAAAVDGIVDVIVRSVHKGEKVNITGFGVFEKRARAARTA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP 96
RNPRTGETVKVK T+VPAFR G+ FK V+SGA++LP
Sbjct 60 RNPRTGETVKVKKTNVPAFRAGSTFKDVISGAKKLP 95
>gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
Length=226
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/104 (57%), Positives = 82/104 (79%), Gaps = 1/104 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+L++ + ++LG R+ A AV+ V+DT+VRAV GD V++TGFG FE+ R+AR A
Sbjct 1 MNKAQLVEAVAEQLGG-RKAAAEAVDAVLDTMVRAVVAGDRVSVTGFGTFEKVERSARFA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKR 104
RNP+TGE VKVK T+VP FRPG FK +VSG+++LP +GP+VK+
Sbjct 60 RNPQTGERVKVKKTAVPRFRPGQGFKDLVSGSKKLPKDGPSVKK 103
>gi|319951158|ref|ZP_08025003.1| histone family protein DNA-binding protein [Dietzia cinnamea
P4]
gi|319435174|gb|EFV90449.1| histone family protein DNA-binding protein [Dietzia cinnamea
P4]
Length=126
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/96 (57%), Positives = 70/96 (73%), Gaps = 0/96 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+LI L ++G D + AT A+EN +D IVR V G+S+TI GFG+FE++ RAARVA
Sbjct 1 MNKADLIAELADRMGGDHQLATEALENTLDIIVRTVASGESITIMGFGIFEKKARAARVA 60
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP 96
RNP TGE++ V PT P FRPG FK+V+ G + LP
Sbjct 61 RNPHTGESIPVPPTYSPVFRPGQYFKSVIQGTEALP 96
>gi|134102579|ref|YP_001108240.1| histone-like DNA binding protein [Saccharopolyspora erythraea
NRRL 2338]
gi|291004735|ref|ZP_06562708.1| histone-like DNA binding protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133915202|emb|CAM05315.1| histone-like DNA binding protein [Saccharopolyspora erythraea
NRRL 2338]
Length=215
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/96 (66%), Positives = 78/96 (82%), Gaps = 1/96 (1%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+LI+ L ++LG D++ A+ AVE+VVD IVR V+KG+ V ITGFGVFE+R RAAR A
Sbjct 1 MNKAQLIEALAERLG-DKKTASKAVEDVVDIIVRQVNKGEKVNITGFGVFEKRARAARTA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP 96
RNPRTGE VKVK T+VPAFR G QFK V+ G ++LP
Sbjct 60 RNPRTGEAVKVKKTNVPAFRAGTQFKEVIGGTRKLP 95
>gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-binding protein [Streptomyces clavuligerus
ATCC 27064]
Length=130
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 90/130 (70%), Gaps = 4/130 (3%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+LI+ + K+GS R+QA AVE+V+DTIVR V G+ V++TGFG FE+ R AR A
Sbjct 1 MNKAQLINAVADKMGS-RKQAADAVEHVLDTIVRTVVAGERVSVTGFGSFEKVSRPARYA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVK---RGVGASAAKKVAKK 117
RNP+TGE V+VK +S+P FR G FK + SG ++LP +G +++ +G + A V +K
Sbjct 60 RNPQTGERVRVKKSSMPRFRAGQGFKDLASGTKKLPKKGVSIRKAPKGTFSGGAPAVVEK 119
Query 118 APAKKATKAA 127
A KK KAA
Sbjct 120 AAPKKHVKAA 129
>gi|300783647|ref|YP_003763938.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|299793161|gb|ADJ43536.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|340525037|gb|AEK40242.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei S699]
Length=261
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/99 (62%), Positives = 79/99 (80%), Gaps = 1/99 (1%)
Query 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVAR 61
NKA+LI+ LT++LG D++ A+ AV+ +VD I+R V+KG+ V ITGFGVFE+R RAAR AR
Sbjct 3 NKAQLIEALTERLG-DKKAASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61
Query 62 NPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGP 100
NPRTGE V+VK T+VPAFR G FK V+SGA++LP P
Sbjct 62 NPRTGEAVRVKKTNVPAFRAGTTFKDVISGAKKLPKATP 100
>gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|299793137|gb|ADJ43512.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|340525013|gb|AEK40218.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei S699]
Length=225
Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/95 (63%), Positives = 76/95 (80%), Gaps = 0/95 (0%)
Query 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVAR 61
NKA+LI+ L+++LG D++ A AV+ +VD I+R V+KG+ V ITGFGVFE+R RAAR AR
Sbjct 3 NKAQLIEALSERLGDDKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 62
Query 62 NPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP 96
NPRTGE VKVK T+VPAFR G FK V+SG ++LP
Sbjct 63 NPRTGEAVKVKKTNVPAFRAGTTFKDVISGTKKLP 97
>gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
gi|315589541|gb|ADU48838.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
Length=228
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/104 (55%), Positives = 71/104 (69%), Gaps = 1/104 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKAELI L +LGS RR A+ A+E V+D ++R V KG V ITGFG FE+ RAAR
Sbjct 1 MNKAELIGALEARLGS-RRVASDALEAVLDIVIREVAKGGKVGITGFGTFERANRAARTG 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKR 104
RNP+TG+TVK+K T +P FR G FK +VSG ++L G A R
Sbjct 60 RNPKTGDTVKIKKTRIPKFRAGTNFKDIVSGQKKLAKTGSAATR 103
>gi|302524984|ref|ZP_07277326.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4]
gi|302433879|gb|EFL05695.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4]
Length=207
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/95 (63%), Positives = 77/95 (82%), Gaps = 1/95 (1%)
Query 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVAR 61
NKA+LI+ L++++G D++ A AV+ +VD I+R VHKG+ VTITGFGVFE+R RAAR AR
Sbjct 3 NKAQLIEALSERIG-DKKAAAEAVDGLVDIIIRTVHKGEKVTITGFGVFEKRARAARTAR 61
Query 62 NPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLP 96
NPRTGE V+VK T+VPAFR G FK V+SG ++LP
Sbjct 62 NPRTGEAVRVKKTNVPAFRAGTTFKDVISGTKKLP 96
>gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
gi|294815333|ref|ZP_06773976.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
ATCC 27064]
gi|326443687|ref|ZP_08218421.1| histone-like DNA binding protein [Streptomyces clavuligerus ATCC
27064]
gi|197706145|gb|EDY51957.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
gi|294327932|gb|EFG09575.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
ATCC 27064]
Length=222
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/99 (59%), Positives = 74/99 (75%), Gaps = 1/99 (1%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+L++ + KLG R+QA AV++V+D IVRAV GD V++TGFG FE+ R AR A
Sbjct 1 MNKAQLVEAIADKLGG-RQQAADAVDSVLDAIVRAVVAGDRVSVTGFGSFEKVERPARYA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEG 99
RNP+TGE V+VK TSVP FR G FK +VSGA++LP G
Sbjct 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGAKKLPRGG 98
>gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
gi|291339943|gb|EFE66899.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
Length=212
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/104 (56%), Positives = 76/104 (74%), Gaps = 1/104 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+L++ + K+G R+QA AV+ V+D IVRAV GD V++TGFG FE+ R AR A
Sbjct 1 MNKAQLVEAIADKMGG-RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKR 104
RNP+TGE V+VK TSVP FR G FK +VSG+++LP AVK+
Sbjct 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKK 103
>gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-binding protein [Streptomyces roseosporus
NRRL 11379]
gi|291448042|ref|ZP_06587432.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
gi|291350989|gb|EFE77893.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
Length=217
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/104 (56%), Positives = 76/104 (74%), Gaps = 1/104 (0%)
Query 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60
MNKA+L++ + K+G R+QA AV+ V+D IVRAV GD V++TGFG FE+ R AR A
Sbjct 1 MNKAQLVEAIADKVGG-RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59
Query 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKR 104
RNP+TGE V+VK TSVP FR G FK +VSG+++LP AVK+
Sbjct 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDVAVKK 103
Lambda K H
0.309 0.119 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 254328062080
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40