BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2990c
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
gi|167969989|ref|ZP_02552266.1| hypothetical protein MtubH3_1893... 582 2e-164
gi|15610127|ref|NP_217506.1| hypothetical protein Rv2990c [Mycob... 581 4e-164
gi|31794166|ref|NP_856659.1| hypothetical protein Mb3014c [Mycob... 580 1e-163
gi|289575697|ref|ZP_06455924.1| conserved hypothetical protein [... 578 3e-163
gi|340627979|ref|YP_004746431.1| hypothetical protein MCAN_30121... 578 3e-163
gi|254233073|ref|ZP_04926400.1| hypothetical protein TBCG_02928 ... 574 5e-162
gi|289755106|ref|ZP_06514484.1| conserved hypothetical protein [... 376 3e-102
gi|289209598|ref|YP_003461664.1| hypothetical protein TK90_2438 ... 322 4e-86
gi|333991640|ref|YP_004524254.1| hypothetical protein JDM601_300... 291 9e-77
gi|94495628|ref|ZP_01302208.1| hypothetical protein SKA58_06250 ... 270 2e-70
gi|298707328|emb|CBJ25955.1| conserved unknown protein [Ectocarp... 211 8e-53
gi|224012811|ref|XP_002295058.1| predicted protein [Thalassiosir... 163 3e-38
gi|301111438|ref|XP_002904798.1| conserved hypothetical protein ... 152 5e-35
gi|219120308|ref|XP_002180895.1| predicted protein [Phaeodactylu... 147 1e-33
gi|320164022|gb|EFW40921.1| conserved hypothetical protein [Caps... 145 1e-32
gi|284008259|emb|CBA74578.1| conserved hypothetical protein [Ars... 133 4e-29
gi|284008258|emb|CBA74576.1| conserved hypothetical protein [Ars... 119 6e-25
gi|323454902|gb|EGB10771.1| hypothetical protein AURANDRAFT_5992... 88.2 1e-15
gi|114706990|ref|ZP_01439889.1| SAM (and some other nucleotide) ... 37.4 2.6
gi|91792858|ref|YP_562509.1| peptidoglycan binding domain-contai... 37.0 3.7
>gi|167969989|ref|ZP_02552266.1| hypothetical protein MtubH3_18938 [Mycobacterium tuberculosis
H37Ra]
gi|254552067|ref|ZP_05142514.1| hypothetical protein Mtube_16687 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=308
Score = 582 bits (1501), Expect = 2e-164, Method: Compositional matrix adjust.
Identities = 286/286 (100%), Positives = 286/286 (100%), Gaps = 0/286 (0%)
Query 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG
Sbjct 23 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 82
Query 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT
Sbjct 83 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 142
Query 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG
Sbjct 143 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 202
Query 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI
Sbjct 203 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 262
Query 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM
Sbjct 263 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 308
>gi|15610127|ref|NP_217506.1| hypothetical protein Rv2990c [Mycobacterium tuberculosis H37Rv]
gi|15842546|ref|NP_337583.1| hypothetical protein MT3068 [Mycobacterium tuberculosis CDC1551]
gi|121638871|ref|YP_979095.1| hypothetical protein BCG_3011c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
53 more sequence titles
Length=286
Score = 581 bits (1498), Expect = 4e-164, Method: Compositional matrix adjust.
Identities = 286/286 (100%), Positives = 286/286 (100%), Gaps = 0/286 (0%)
Query 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG
Sbjct 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
Query 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT
Sbjct 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
Query 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG
Sbjct 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
Query 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI
Sbjct 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
Query 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM
Sbjct 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
>gi|31794166|ref|NP_856659.1| hypothetical protein Mb3014c [Mycobacterium bovis AF2122/97]
gi|31619761|emb|CAD96701.1| HYPOTHETICAL PROTEIN Mb3014c [Mycobacterium bovis AF2122/97]
Length=286
Score = 580 bits (1494), Expect = 1e-163, Method: Compositional matrix adjust.
Identities = 285/286 (99%), Positives = 285/286 (99%), Gaps = 0/286 (0%)
Query 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG
Sbjct 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
Query 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT
Sbjct 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
Query 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG
Sbjct 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
Query 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILE RRFPIRYRARYVNGQLNMCLARI
Sbjct 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEERRFPIRYRARYVNGQLNMCLARI 240
Query 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM
Sbjct 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
>gi|289575697|ref|ZP_06455924.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632996|ref|YP_004724638.1| hypothetical protein MAF_29950 [Mycobacterium africanum GM041182]
gi|289540128|gb|EFD44706.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339332352|emb|CCC28065.1| hypothetical protein MAF_29950 [Mycobacterium africanum GM041182]
Length=286
Score = 578 bits (1491), Expect = 3e-163, Method: Compositional matrix adjust.
Identities = 285/286 (99%), Positives = 285/286 (99%), Gaps = 0/286 (0%)
Query 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG
Sbjct 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
Query 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT
Sbjct 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
Query 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG
Sbjct 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
Query 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI
Sbjct 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
Query 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
ERFSSN LGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM
Sbjct 241 ERFSSNELGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
>gi|340627979|ref|YP_004746431.1| hypothetical protein MCAN_30121 [Mycobacterium canettii CIPT
140010059]
gi|340006169|emb|CCC45343.1| hypothetical protein MCAN_30121 [Mycobacterium canettii CIPT
140010059]
Length=286
Score = 578 bits (1490), Expect = 3e-163, Method: Compositional matrix adjust.
Identities = 284/286 (99%), Positives = 286/286 (100%), Gaps = 0/286 (0%)
Query 1 MCVTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
MCVTWAEMP+IAALIRHIEDLHARHGRSY+LRAGISSLFRYIEGVHGERPWGTVLDAGTG
Sbjct 1 MCVTWAEMPEIAALIRHIEDLHARHGRSYLLRAGISSLFRYIEGVHGERPWGTVLDAGTG 60
Query 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT
Sbjct 61 VKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDT 120
Query 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG
Sbjct 121 ILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIG 180
Query 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI
Sbjct 181 RVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARI 240
Query 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM
Sbjct 241 ERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
>gi|254233073|ref|ZP_04926400.1| hypothetical protein TBCG_02928 [Mycobacterium tuberculosis C]
gi|308232307|ref|ZP_07415620.2| hypothetical protein TMAG_01196 [Mycobacterium tuberculosis SUMu001]
gi|308369922|ref|ZP_07419531.2| hypothetical protein TMBG_03140 [Mycobacterium tuberculosis SUMu002]
12 more sequence titles
Length=284
Score = 574 bits (1480), Expect = 5e-162, Method: Compositional matrix adjust.
Identities = 283/284 (99%), Positives = 284/284 (100%), Gaps = 0/284 (0%)
Query 3 VTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTGVK 62
+TWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTGVK
Sbjct 1 MTWAEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTGVK 60
Query 63 SLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDTIL 122
SLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDTIL
Sbjct 61 SLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDTIL 120
Query 123 VDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIGRV 182
VDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIGRV
Sbjct 121 VDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIGRV 180
Query 183 RDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARIER 242
RDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARIER
Sbjct 181 RDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARIER 240
Query 243 FSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 286
FSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM
Sbjct 241 FSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVEPM 284
>gi|289755106|ref|ZP_06514484.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289695693|gb|EFD63122.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=185
Score = 376 bits (965), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 184/185 (99%), Positives = 185/185 (100%), Gaps = 0/185 (0%)
Query 102 LLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLE 161
+LVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLE
Sbjct 1 MLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLE 60
Query 162 PYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFP 221
PYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFP
Sbjct 61 PYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFP 120
Query 222 IRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVI 281
IRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVI
Sbjct 121 IRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVI 180
Query 282 AVEPM 286
AVEPM
Sbjct 181 AVEPM 185
>gi|289209598|ref|YP_003461664.1| hypothetical protein TK90_2438 [Thioalkalivibrio sp. K90mix]
gi|288945229|gb|ADC72928.1| conserved hypothetical protein [Thioalkalivibrio sp. K90mix]
Length=286
Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 152/253 (61%), Positives = 191/253 (76%), Gaps = 2/253 (0%)
Query 34 GISSLFRYIEGVHGERPWGTVLDAGTGVKSLQWIQTLPTERWTAVTAARSLADKTRAALG 93
G S +F+ IE G++PWG+ LDAGTG KS++WI L TERWTAVTA++ +A TR A G
Sbjct 15 GTSPIFQAIEKAQGDQPWGSFLDAGTGRKSIEWISRLDTERWTAVTASQEMARTTRKAAG 74
Query 94 SAMRPQDRLLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHG 153
+A R QDR+LVGNW+ D LL GE FDT+L+DY +GAIEGFAPYWQDR RLRPH+ D
Sbjct 75 TARRRQDRILVGNWMSDQLLFGERFDTVLLDYFIGAIEGFAPYWQDRALHRLRPHVGD-- 132
Query 154 RLYLVGLEPYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFR 213
RLYLVG+EPYV EP+ E+G ++ EIGR+RDACLL+AG RPYRE+P W++ +LG+AGFR
Sbjct 133 RLYLVGVEPYVLVEPKDEAGALVREIGRLRDACLLIAGNRPYREYPSSWVMRQLGIAGFR 192
Query 214 ILEARRFPIRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQDGL 273
+L+ R FPI YR R+VNGQL++CL ++ FS GL AM +E LR RAL L Q+GL
Sbjct 193 VLDVRYFPIHYRERFVNGQLDLCLRQLPHFSDEGLAKAMHHQIEVLRERALPLARSQEGL 252
Query 274 WHGNDYVIAVEPM 286
HG DY+I EPM
Sbjct 253 KHGADYLIVAEPM 265
>gi|333991640|ref|YP_004524254.1| hypothetical protein JDM601_3000 [Mycobacterium sp. JDM601]
gi|333487608|gb|AEF37000.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=203
Score = 291 bits (744), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 141/203 (70%), Positives = 169/203 (84%), Gaps = 1/203 (0%)
Query 84 LADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFE 143
+ D TRA G +RPQDRL++GNW+DD+LLAGETFDT+LVDYLVGAIEGFAPYWQDR+FE
Sbjct 1 MVDATRATPGD-IRPQDRLMLGNWMDDNLLAGETFDTVLVDYLVGAIEGFAPYWQDRLFE 59
Query 144 RLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWM 203
RLRP +AD GRLY+ GLEPYVQ+ P TESG +IWEIGR RDACLLLAGERPYRE+PL+W+
Sbjct 60 RLRPLVADGGRLYVTGLEPYVQYRPNTESGHVIWEIGRARDACLLLAGERPYREYPLEWI 119
Query 204 LGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARA 263
L +L AGF +E+R FPIRY AR+V GQLNMC R+ERF S LG +MR Y+++L++RA
Sbjct 120 LRQLEQAGFLAVESRYFPIRYGARHVYGQLNMCRNRLERFHSQALGSSMRQYIDDLQSRA 179
Query 264 LQLNERQDGLWHGNDYVIAVEPM 286
L L ER+ L +G DYVIAVEPM
Sbjct 180 LALIEREGSLRYGRDYVIAVEPM 202
>gi|94495628|ref|ZP_01302208.1| hypothetical protein SKA58_06250 [Sphingomonas sp. SKA58]
gi|94425016|gb|EAT10037.1| hypothetical protein SKA58_06250 [Sphingomonas sp. SKA58]
Length=241
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/240 (57%), Positives = 172/240 (72%), Gaps = 2/240 (0%)
Query 45 VHGERPWGTVLDAGTGVKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDRLLV 104
+ G+RPWGT LDAGTG S+ W+ L T+RW AVT A A + R A RPQDR+++
Sbjct 2 LQGDRPWGTFLDAGTGTNSIGWVSGLATDRWVAVTGAAGHAVQVRDASDRVRRPQDRIIL 61
Query 105 GNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYV 164
GNW + +LLAGE FDTIL DYL+GAIEGFAPY+Q+R+F RLR LA GRLYLVGLEPYV
Sbjct 62 GNWANPTLLAGERFDTILADYLIGAIEGFAPYFQERMFARLRT-LA-RGRLYLVGLEPYV 119
Query 165 QFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRY 224
PET G+I+ +IGR RDA LL AGERPYREFP++W+L ++ +GFR++ A RFPIRY
Sbjct 120 AERPETPDGRILCDIGRWRDAVLLQAGERPYREFPMEWVLEQMTASGFRVVSAHRFPIRY 179
Query 225 RARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVE 284
+ ++VN Q++MC +R+ R L A+ A E LR AL + R+ GL HG DYVIA E
Sbjct 180 QEKFVNSQIDMCASRLSRLGDRSLAAALHARGEALRQDALAIIGREGGLRHGFDYVIAAE 239
>gi|298707328|emb|CBJ25955.1| conserved unknown protein [Ectocarpus siliculosus]
Length=358
Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/256 (43%), Positives = 160/256 (63%), Gaps = 11/256 (4%)
Query 36 SSLFRYIEGVH--GERPWGTVLDAGTGVKSLQWIQTLPTERWTAVTAARSLADKTRAALG 93
+LFR IEG+ +PWG LDAGTG SL+WI TL TE +TAVTA A+ TR +G
Sbjct 64 DALFRSIEGMQKAANKPWGKFLDAGTGTHSLKWINTLNTEGFTAVTADPQFAENTRKEIG 123
Query 94 SAMRPQDRLLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHG 153
++ D ++VGNW D+ L G FDT+L DYLVGAI+GFAPY+QD+VFERL+ H+A G
Sbjct 124 FKVKTPDEIVVGNWRDEKFLEGRVFDTVLADYLVGAIDGFAPYYQDQVFERLKRHVAPGG 183
Query 154 RLYLVGLEPYVQFEPETESG--KIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAG 211
R+YLVG++P P+ G +++ E R+RD+C+LLAG RPYRE+PLDW+ ++ +G
Sbjct 184 RIYLVGMQPL----PDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKKSG 239
Query 212 FRILEARRFPIRYRARYVNGQLNMCLARIERFSSNG--LGMAMRAYVEELRARALQLNER 269
+ A++ P+ Y V QL++ ++ ++ L A+ ++ +L R +
Sbjct 240 MVVTSAKKMPVLYAPHTVKRQLDVASRKLPIIAATDPKLAAALERHISDLDGRVRKELAG 299
Query 270 QDG-LWHGNDYVIAVE 284
G + G DYV+A E
Sbjct 300 AGGRVEVGFDYVVAAE 315
>gi|224012811|ref|XP_002295058.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969497|gb|EED87838.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length=331
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/300 (36%), Positives = 156/300 (52%), Gaps = 47/300 (15%)
Query 28 SYILRAGISSLFRYIEGVHGERP---WGTVLDAGTGVKSLQWIQTL-------------- 70
S + G LF YIE E +G LDAGTG SL+WI ++
Sbjct 31 SKFAKKGGDVLFGYIEKSQAESSSPSFGRFLDAGTGSHSLRWIASVIHREHLLTDSLGDA 90
Query 71 ----PTERWTAVTAARSLADKT-RAALGSAMRPQDRLLVGNWVD----------DS---- 111
E ++A+TA + + A + + +L+GNW D DS
Sbjct 91 APLVSLESYSAITADEVMMRRVIEEAESLGIADKGDVLIGNWKDGVDKNGNIEFDSDAGG 150
Query 112 ---LLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEP 168
LL G FDTIL DYLVGA++GF+PY+QD + +RL PHLA GRLY++GL+P P
Sbjct 151 KKLLLEGREFDTILADYLVGAVDGFSPYFQDLIIQRLVPHLAPGGRLYIIGLQPI----P 206
Query 169 ETESG--KIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRA 226
+ G + I +VRDAC+ LA R YRE+P+DW+ + AG R++E R++PIRY
Sbjct 207 DNVQGDADVFCRITKVRDACIKLANHRCYREYPVDWIERHVRRAGLRVVETRQYPIRYDH 266
Query 227 RYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQ-DG-LWHGNDYVIAVE 284
+ Q+N+ ++++ F S GL M ++ L + ++ +Q DG + G DYV+ E
Sbjct 267 ATMLRQINVGRSKLKLFPSKGLADEMGKVLDSLEKESKEVTAKQADGRITLGFDYVVVAE 326
>gi|301111438|ref|XP_002904798.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095128|gb|EEY53180.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length=285
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/275 (39%), Positives = 142/275 (52%), Gaps = 30/275 (10%)
Query 37 SLFRYIEGVHGE----RPWGTVLDAGTGVKSLQW-----IQTLPTERWTAVTAARSLADK 87
SLFR+IE PWG VLDAGTG SL W + +L E AVT + LA+
Sbjct 7 SLFRWIEEREHHDSSISPWGRVLDAGTGRHSLSWLLHGGVSSL-IEEVVAVTGEKPLAND 65
Query 88 TRAALGSAMRPQD---RLLVGNWVDDSLLAGET-FDTILVDYLVGAIEGFAPYWQDRVFE 143
A + P ++ GNW + + L+ E FD I+ DYLVGAIEGFAPY+QD++ +
Sbjct 66 LSAEYDPSKTPHATPFKVHAGNWQNATFLSNEKPFDIIIADYLVGAIEGFAPYYQDQICD 125
Query 144 RLRPHLADHGRLYLVGLEPYVQFEP-------ETESGKIIWEIGRVRDACLLLAGERPYR 196
RL LA GR+YLVGL+P + + E E+GK+I E+ R RDACLLLAG R YR
Sbjct 126 RLEKLLAPGGRIYLVGLQPLSESQTPAGSSDAEIEAGKLIQEVARTRDACLLLAGRRCYR 185
Query 197 EFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYV 256
E+P++W +L G + + R Y + QL + I F L M+ +
Sbjct 186 EYPIEWSQRQLEKVGLEVTNSVRLTNVYGRSAITRQLEVGRRHIPLFWDPVLAGHMQQAL 245
Query 257 --------EELRARALQLNERQDGLWHGNDYVIAV 283
EE + AL E Q + G DYVIA
Sbjct 246 DCVDERLEEEFGSGALP-KEEQRRIRFGFDYVIAA 279
>gi|219120308|ref|XP_002180895.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407611|gb|EEC47547.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length=331
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/265 (34%), Positives = 146/265 (56%), Gaps = 18/265 (6%)
Query 37 SLFRYIEGVHGERPWGTVLDAGTGVKSLQWIQTLPTERWT---AVTAARSLADKTRAALG 93
+LF +IE R +G VLDAGTG+ SL+W+ TL + A+TA R++ + +
Sbjct 65 ALFGWIEEQQEGRDFGKVLDAGTGLHSLRWLATLELKGMVSVDAITADRTMQKNVQQEVD 124
Query 94 S-AMRPQDRLLVGNWVDDSLLAGET----------FDTILVDYLVGAIEGFAPYWQDRVF 142
+ + R+L+GNW DS+ + +D IL DYL+GA++GF+PY QD++
Sbjct 125 ALGVSHLSRVLIGNWFPDSITEPDQNPLLQDISSDYDVILADYLIGAMDGFSPYKQDQMI 184
Query 143 ERLRPHLADHGRLYLVGLEPYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDW 202
+L L GRLY+VGL+P P ++ +I + + RDAC+LLAG R YRE+P+DW
Sbjct 185 SQLVGLLKPGGRLYVVGLQPIPDKTPGNDAANVICRVRQARDACILLAGHRCYREYPVDW 244
Query 203 MLGRL-GLAGFRILEARRFPIRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRA 261
+ ++ +L +R+FPI YR + Q+ + ++ + F L +M A +++L
Sbjct 245 VQRQVEDHPDLELLPSRQFPILYRHETICKQIQVGRSKFKLFRPE-LVSSMGALLDDLEK 303
Query 262 RALQLNERQDG--LWHGNDYVIAVE 284
++ + + + G DYV+ E
Sbjct 304 QSFEATSKAPNGKIQLGFDYVVTAE 328
>gi|320164022|gb|EFW40921.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length=354
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/291 (34%), Positives = 141/291 (49%), Gaps = 59/291 (20%)
Query 49 RP-WGTVLDAGTGVKSLQWIQTLPTERW-----------TAVTAARSLADKTRAALGSAM 96
RP WG +LDAGTG SL W +L R TAVTA+ + T AL +
Sbjct 54 RPLWGRLLDAGTGTDSLNWALSLAPSRIQEETALDPASITAVTASVDMYRTTLRALQTYQ 113
Query 97 RPQD-----------RLLVGNWVDDSLLAG------------------------------ 115
QD L+ G W++ SLLA
Sbjct 114 ARQDANPRWKQDETVHLVRGAWLNPSLLAKPTSQAWDAQAVWVQSLTSNCEEEEDSDKTA 173
Query 116 --ETFDTILVDYLVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQFEPETESG 173
E FDTIL DYL+GA++GF P+ Q V RL H+ R++++G+EPY T G
Sbjct 174 AYEKFDTILADYLIGAVDGFTPFHQHTVLSRLARHMVHGSRMFVLGMEPYPD-SASTPGG 232
Query 174 KIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARRFPIRYRARYVNGQL 233
+++ ++ +RDAC+LLAG+RPYRE+P++W+ L LA I E+ FP+ Y AR + QL
Sbjct 233 ELVLKVAALRDACILLAGQRPYREYPIEWIQDHLRLANLTIRESITFPVVYGARKLISQL 292
Query 234 NMCLARIERFSSNG---LGMAMRAYVEELRARALQLNERQDGLWHGNDYVI 281
+C +++ + G + A++ V+ L+ E GL G DYV+
Sbjct 293 EVCEYKLQLMTELGEQTIREALQERVDALKVAVENDPEIAAGLCFGADYVV 343
>gi|284008259|emb|CBA74578.1| conserved hypothetical protein [Arsenophonus nasoniae]
Length=108
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/104 (53%), Positives = 74/104 (72%), Gaps = 0/104 (0%)
Query 35 ISSLFRYIEGVHGERPWGTVLDAGTGVKSLQWIQTLPTERWTAVTAARSLADKTRAALGS 94
+S+LFR+IE +HG PWG +LDAGTG+ SL WI L +E WTAVT A ++ + + +
Sbjct 2 VSTLFRHIEMIHGNNPWGKILDAGTGINSLSWISQLKSESWTAVTCAINMKADIQQIISA 61
Query 95 AMRPQDRLLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQ 138
RPQDRLL+GNW D + E FDT++ DYL+GA++GF PYWQ
Sbjct 62 RQRPQDRLLLGNWADSDFMVNERFDTVIADYLLGAVDGFVPYWQ 105
>gi|284008258|emb|CBA74576.1| conserved hypothetical protein [Arsenophonus nasoniae]
Length=127
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/125 (43%), Positives = 78/125 (63%), Gaps = 0/125 (0%)
Query 160 LEPYVQFEPETESGKIIWEIGRVRDACLLLAGERPYREFPLDWMLGRLGLAGFRILEARR 219
+EPYV + +G ++ IGR+RDACLLLAGERPYRE+P DW++ L GF I++ +
Sbjct 1 MEPYVPYNANCRAGHLVVSIGRLRDACLLLAGERPYREYPADWVIYHLQQMGFEIVDLKH 60
Query 220 FPIRYRARYVNGQLNMCLARIERFSSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDY 279
+PI Y ++ GQ+ MC R+ F L M+M ++ +L +AL +Q L HG DY
Sbjct 61 YPINYGHNWLTGQMEMCRQRVNTFVDRQLAMSMLEHINQLEQQALLCIAQQGSLKHGADY 120
Query 280 VIAVE 284
VI+ +
Sbjct 121 VISAK 125
>gi|323454902|gb|EGB10771.1| hypothetical protein AURANDRAFT_59920 [Aureococcus anophagefferens]
Length=217
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/221 (29%), Positives = 105/221 (48%), Gaps = 12/221 (5%)
Query 70 LPTERWTAVTA----ARSLADKTRAALGSAMRPQDRLLVGNWVDDSLLAGETFDTILVDY 125
+P TAVTA + D+ R A A ++VGNW + LAGE +D ++ DY
Sbjct 1 MPCSTLTAVTARAAGTDAYGDRLRDAFAGAAVD---VVVGNWREAGFLAGERYDVVVADY 57
Query 126 LVGAIEGFAPYWQDRVFERLRPHLADHGRLYLVGLEPYVQ-FEPETESGKIIWEIGRVRD 184
L+GA+E P+ D V RL L G L VG+EPY + ++ +++ ++ + D
Sbjct 58 LLGAVELHWPHGADAVLARLLGALKPGGTLLFVGVEPYESLLDRADDADRLVLDVESLGD 117
Query 185 ACLLLAGERPYREFPLDWMLGRLGL-AGFRILEARRFPIRYRARYVNGQLNMCLARIERF 243
+ LAGE YRE P W+ ++ G+ ++ + FP+ A + Q+ +
Sbjct 118 SAAALAGEATYREVPEAWITRQVDARDGYAVVASETFPMTLSAASLRKQVTYARTTSAKI 177
Query 244 SSNGLGMAMRAYVEELRARALQLNERQDGLWHGNDYVIAVE 284
+ GL A V EL +++N + G +Y + V+
Sbjct 178 ADAGLRKAYERRVAEL---TIEVNAWKGTHRKGRNYALVVK 215
>gi|114706990|ref|ZP_01439889.1| SAM (and some other nucleotide) binding motif:Generic methyltransferase:Bacterial
regulatory protein, ArsR [Fulvimarina pelagi
HTCC2506]
gi|114537540|gb|EAU40665.1| SAM (and some other nucleotide) binding motif:Generic methyltransferase:Bacterial
regulatory protein, ArsR [Fulvimarina pelagi
HTCC2506]
Length=337
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/125 (27%), Positives = 56/125 (45%), Gaps = 12/125 (9%)
Query 42 IEGVHGERPWGTVLDAGTGVKSLQWIQTLPTERWTAVTAARSLADKTRAALGSAMRPQDR 101
++ V G++ GT+LD GTG + + ER V +R + RA L A +
Sbjct 148 LDRVLGKQRIGTMLDIGTGTGRMMEMLANRCERMLGVDTSREMISAARAKLDDAKVKNAQ 207
Query 102 LLVGNWVDDSLLAGETFDTILVDYLVGAIEGFAPYWQDRVFERLRPH---LADHGRLYLV 158
L VG+ + GET+D +++ ++ ++ D +R LA GRL +V
Sbjct 208 LRVGDAYNLP-ANGETYDLVVLHQVL--------HYLDEPMRAVREASSVLAPGGRLVIV 258
Query 159 GLEPY 163
P+
Sbjct 259 DFAPH 263
>gi|91792858|ref|YP_562509.1| peptidoglycan binding domain-containing protein [Shewanella denitrificans
OS217]
gi|91714860|gb|ABE54786.1| Peptidoglycan-binding domain 1 [Shewanella denitrificans OS217]
Length=498
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 34/69 (50%), Gaps = 6/69 (8%)
Query 6 AEMPKIAALIRHIEDLHARHGRSYILRAGISSLFRYIEGVHGERPWGTVLDAGTGVKSLQ 65
A +P IAA + + D H H + Y+L + S + + HG + G + G K+L
Sbjct 184 ASIPAIAARLSLLGDFHGAH-QGYVLTPALESGLKAFQRRHGLKDDGVI-----GPKTLS 237
Query 66 WIQTLPTER 74
W+ LP ER
Sbjct 238 WLNQLPIER 246
Lambda K H
0.325 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 461491158592
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40