BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2998

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610135|ref|NP_217514.1|  hypothetical protein Rv2998 [Mycoba...   301    2e-80
gi|148824188|ref|YP_001288942.1|  hypothetical protein TBFG_13013...   299    1e-79
gi|340627987|ref|YP_004746439.1|  hypothetical protein MCAN_30201...   276    6e-73
gi|15842554|ref|NP_337591.1|  hypothetical protein MT3076 [Mycoba...   266    7e-70
gi|308232310|ref|ZP_07664053.1|  hypothetical protein TMAG_01205 ...   254    4e-66
gi|308369924|ref|ZP_07419540.2|  hypothetical protein TMBG_03149 ...   238    3e-61
gi|167967836|ref|ZP_02550113.1|  hypothetical protein MtubH3_0730...   223    7e-57
gi|254552076|ref|ZP_05142523.1|  hypothetical protein Mtube_16732...   137    4e-31
gi|298526468|ref|ZP_07013877.1|  hypothetical protein TBAG_01887 ...   101    4e-20
gi|288921100|ref|ZP_06415389.1|  hypothetical protein FrEUN1fDRAF...  42.0    0.031
gi|71907444|ref|YP_285031.1|  formate dehydrogenase accessory pro...  37.4    0.75 


>gi|15610135|ref|NP_217514.1| hypothetical protein Rv2998 [Mycobacterium tuberculosis H37Rv]
 gi|31794174|ref|NP_856667.1| hypothetical protein Mb3022 [Mycobacterium bovis AF2122/97]
 gi|121638879|ref|YP_979103.1| hypothetical protein BCG_3019 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 39 more sequence titles
 
gi|148662848|ref|YP_001284371.1| hypothetical protein MRA_3027 [Mycobacterium tuberculosis H37Ra]
 gi|224991371|ref|YP_002646060.1| hypothetical protein JTY_3014 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797908|ref|YP_003030909.1| hypothetical protein TBMG_00972 [Mycobacterium tuberculosis KZN 
1435]
 gi|254233081|ref|ZP_04926408.1| hypothetical protein TBCG_02936 [Mycobacterium tuberculosis C]
 gi|254365631|ref|ZP_04981676.1| hypothetical protein TBHG_02929 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289553212|ref|ZP_06442422.1| hypothetical protein TBXG_00962 [Mycobacterium tuberculosis KZN 
605]
 gi|289575705|ref|ZP_06455932.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289746802|ref|ZP_06506180.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751676|ref|ZP_06511054.1| hypothetical protein TBDG_02022 [Mycobacterium tuberculosis T92]
 gi|289755116|ref|ZP_06514494.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289759124|ref|ZP_06518502.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289763178|ref|ZP_06522556.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|308371197|ref|ZP_07667107.1| hypothetical protein TMCG_02253 [Mycobacterium tuberculosis SUMu003]
 gi|308377190|ref|ZP_07668456.1| hypothetical protein TMHG_02209 [Mycobacterium tuberculosis SUMu008]
 gi|308378158|ref|ZP_07481734.2| hypothetical protein TMIG_02505 [Mycobacterium tuberculosis SUMu009]
 gi|339633004|ref|YP_004724646.1| hypothetical protein MAF_30030 [Mycobacterium africanum GM041182]
 gi|2791595|emb|CAA16083.1| HYPOTHETICAL PROTEIN Rv2998 [Mycobacterium tuberculosis H37Rv]
 gi|31619769|emb|CAD96709.1| HYPOTHETICAL PROTEIN Mb3022 [Mycobacterium bovis AF2122/97]
 gi|121494527|emb|CAL73008.1| Hypothetical protein BCG_3019 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124602140|gb|EAY61150.1| hypothetical protein TBCG_02936 [Mycobacterium tuberculosis C]
 gi|134151144|gb|EBA43189.1| hypothetical protein TBHG_02929 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148507000|gb|ABQ74809.1| hypothetical protein MRA_3027 [Mycobacterium tuberculosis H37Ra]
 gi|224774486|dbj|BAH27292.1| hypothetical protein JTY_3014 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253319412|gb|ACT24015.1| hypothetical protein TBMG_00972 [Mycobacterium tuberculosis KZN 
1435]
 gi|289437844|gb|EFD20337.1| hypothetical protein TBXG_00962 [Mycobacterium tuberculosis KZN 
605]
 gi|289540136|gb|EFD44714.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289687330|gb|EFD54818.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289692263|gb|EFD59692.1| hypothetical protein TBDG_02022 [Mycobacterium tuberculosis T92]
 gi|289695703|gb|EFD63132.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710684|gb|EFD74700.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714688|gb|EFD78700.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308329516|gb|EFP18367.1| hypothetical protein TMCG_02253 [Mycobacterium tuberculosis SUMu003]
 gi|308348640|gb|EFP37491.1| hypothetical protein TMHG_02209 [Mycobacterium tuberculosis SUMu008]
 gi|308353365|gb|EFP42216.1| hypothetical protein TMIG_02505 [Mycobacterium tuberculosis SUMu009]
 gi|326904612|gb|EGE51545.1| hypothetical protein TBPG_02520 [Mycobacterium tuberculosis W-148]
 gi|328457684|gb|AEB03107.1| hypothetical protein TBSG_00978 [Mycobacterium tuberculosis KZN 
4207]
 gi|339332360|emb|CCC28073.1| hypothetical protein MAF_30030 [Mycobacterium africanum GM041182]
 gi|341602918|emb|CCC65596.1| hypothetical protein BCGM_3003 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220832|gb|AEN01463.1| hypothetical protein MTCTRI2_3059 [Mycobacterium tuberculosis 
CTRI-2]
Length=153

 Score =  301 bits (771),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 152/153 (99%), Positives = 153/153 (100%), Gaps = 0/153 (0%)

Query  1    VDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL  60
            +DVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL
Sbjct  1    MDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL  60

Query  61   SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE  120
            SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE
Sbjct  61   SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE  120

Query  121  QFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN  153
            QFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN
Sbjct  121  QFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN  153


>gi|148824188|ref|YP_001288942.1| hypothetical protein TBFG_13013 [Mycobacterium tuberculosis F11]
 gi|148722715|gb|ABR07340.1| hypothetical protein TBFG_13013 [Mycobacterium tuberculosis F11]
Length=153

 Score =  299 bits (765),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 151/153 (99%), Positives = 152/153 (99%), Gaps = 0/153 (0%)

Query  1    VDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL  60
            +DVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL
Sbjct  1    MDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL  60

Query  61   SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE  120
            SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESR DCGE
Sbjct  61   SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRPDCGE  120

Query  121  QFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN  153
            QFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN
Sbjct  121  QFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN  153


>gi|340627987|ref|YP_004746439.1| hypothetical protein MCAN_30201 [Mycobacterium canettii CIPT 
140010059]
 gi|340006177|emb|CCC45351.1| hypothetical protein MCAN_30201 [Mycobacterium canettii CIPT 
140010059]
Length=154

 Score =  276 bits (707),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 140/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)

Query  1    VDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL  60
            +DVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL
Sbjct  1    MDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGL  60

Query  61   SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE  120
            SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE
Sbjct  61   SSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGE  120

Query  121  QFGVASWTPQGEFEFGGQEAKG  142
            QFG ASWTPQGEFEFGGQEAKG
Sbjct  121  QFGDASWTPQGEFEFGGQEAKG  142


>gi|15842554|ref|NP_337591.1| hypothetical protein MT3076 [Mycobacterium tuberculosis CDC1551]
 gi|13882866|gb|AAK47405.1| hypothetical protein MT3076 [Mycobacterium tuberculosis CDC1551]
Length=186

 Score =  266 bits (680),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  19   KPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAV  78
            +PRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAV
Sbjct  52   QPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAV  111

Query  79   SGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQ  138
            SGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQ
Sbjct  112  SGGDAGVVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQ  171

Query  139  EAKGVRSSWPASLTN  153
            EAKGVRSSWPASLTN
Sbjct  172  EAKGVRSSWPASLTN  186


>gi|308232310|ref|ZP_07664053.1| hypothetical protein TMAG_01205 [Mycobacterium tuberculosis SUMu001]
 gi|308214342|gb|EFO73741.1| hypothetical protein TMAG_01205 [Mycobacterium tuberculosis SUMu001]
Length=129

 Score =  254 bits (648),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  25   MPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAG  84
            MPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAG
Sbjct  1    MPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAG  60

Query  85   VVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVR  144
            VVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVR
Sbjct  61   VVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVR  120

Query  145  SSWPASLTN  153
            SSWPASLTN
Sbjct  121  SSWPASLTN  129


>gi|308369924|ref|ZP_07419540.2| hypothetical protein TMBG_03149 [Mycobacterium tuberculosis SUMu002]
 gi|308325986|gb|EFP14837.1| hypothetical protein TMBG_03149 [Mycobacterium tuberculosis SUMu002]
Length=121

 Score =  238 bits (606),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  33   MVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAGVVALAEGV  92
            MVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAGVVALAEGV
Sbjct  1    MVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAGVVALAEGV  60

Query  93   DDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVRSSWPASLT  152
            DDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVRSSWPASLT
Sbjct  61   DDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVRSSWPASLT  120

Query  153  N  153
            N
Sbjct  121  N  121


>gi|167967836|ref|ZP_02550113.1| hypothetical protein MtubH3_07307 [Mycobacterium tuberculosis 
H37Ra]
Length=114

 Score =  223 bits (568),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  40   MSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKP  99
            MSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKP
Sbjct  1    MSIRLAGDSTLGRFSTSRLGLSSAKSKPEGDFGTACGAVSGGDAGVVALAEGVDDGQSKP  60

Query  100  GAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN  153
            GAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN
Sbjct  61   GAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVRSSWPASLTN  114


>gi|254552076|ref|ZP_05142523.1| hypothetical protein Mtube_16732 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289448671|ref|ZP_06438415.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421629|gb|EFD18830.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=69

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 68/69 (99%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  85   VVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVR  144
            +VALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVR
Sbjct  1    MVALAEGVDDGQSKPGAAGGARGVGGFRESRADCGEQFGVASWTPQGEFEFGGQEAKGVR  60

Query  145  SSWPASLTN  153
            SSWPASLTN
Sbjct  61   SSWPASLTN  69


>gi|298526468|ref|ZP_07013877.1| hypothetical protein TBAG_01887 [Mycobacterium tuberculosis 94_M4241A]
 gi|298496262|gb|EFI31556.1| hypothetical protein TBAG_01887 [Mycobacterium tuberculosis 94_M4241A]
Length=59

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 50/51 (99%), Positives = 51/51 (100%), Gaps = 0/51 (0%)

Query  1   VDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLG  51
           +DVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLG
Sbjct  1   MDVIWSATIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLG  51


>gi|288921100|ref|ZP_06415389.1| hypothetical protein FrEUN1fDRAFT_5087 [Frankia sp. EUN1f]
 gi|288347476|gb|EFC81764.1| hypothetical protein FrEUN1fDRAFT_5087 [Frankia sp. EUN1f]
Length=47

 Score = 42.0 bits (97),  Expect = 0.031, Method: Composition-based stats.
 Identities = 21/32 (66%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  6   SATIATTVATGMRKPRMHGMPPITSGSMVTRV  37
           SA I TTVATGMR PRM G P I +G  V RV
Sbjct  3   SAIIPTTVATGMRNPRMQGTPLIYAGFTVMRV  34


>gi|71907444|ref|YP_285031.1| formate dehydrogenase accessory protein [Dechloromonas aromatica 
RCB]
 gi|71847065|gb|AAZ46561.1| Formate dehydrogenase accessory protein [Dechloromonas aromatica 
RCB]
Length=302

 Score = 37.4 bits (85),  Expect = 0.75, Method: Compositional matrix adjust.
 Identities = 25/89 (29%), Positives = 38/89 (43%), Gaps = 12/89 (13%)

Query  8    TIATTVATGMRKPRMHGMPPITSGSMVTRVTRMSIRLAGDSTLGRFSTSRLGLSSAKSKP  67
            T+    A  + + R HGMPP+ + S+               T  RF+  +L L   K+ P
Sbjct  66   TLPLPDAASLEQARTHGMPPLNASSL------------SRPTAWRFALQQLALRLEKTAP  113

Query  68   EGDFGTACGAVSGGDAGVVALAEGVDDGQ  96
            EG      G  S  DA +  LA+ +  G+
Sbjct  114  EGAKKALKGLFSASDADLEKLADMLLTGE  142



Lambda     K      H
   0.314    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127769454500


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40