BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3000
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610137|ref|NP_217516.1| transmembrane protein [Mycobacteriu... 423 7e-117
gi|340627990|ref|YP_004746442.1| hypothetical protein MCAN_30231... 420 8e-116
gi|289444566|ref|ZP_06434310.1| transmembrane protein [Mycobacte... 306 1e-81
gi|256391568|ref|YP_003113132.1| ABC transporter [Catenulispora ... 107 9e-22
gi|325572174|ref|ZP_08147241.1| ABC superfamily ATP binding cass... 102 4e-20
gi|315642495|ref|ZP_07897013.1| ABC superfamily ATP binding cass... 102 4e-20
gi|227550323|ref|ZP_03980372.1| YbbM family protein [Enterococcu... 102 4e-20
gi|293552907|ref|ZP_06673563.1| hypothetical protein EfmE1039_03... 102 4e-20
gi|190606496|ref|YP_001974781.1| putative permease [Enterococcus... 102 4e-20
gi|257865220|ref|ZP_05644873.1| conserved hypothetical protein [... 102 4e-20
gi|257897418|ref|ZP_05677071.1| conserved hypothetical protein [... 102 4e-20
gi|257868418|ref|ZP_05648071.1| conserved hypothetical protein [... 102 5e-20
gi|257885872|ref|ZP_05665525.1| conserved hypothetical protein [... 102 5e-20
gi|294786573|ref|ZP_06751827.1| ABC transporter, permease protei... 99.0 5e-19
gi|268326440|emb|CBH40028.1| conserved hypothetical membrane pro... 98.6 6e-19
gi|317131789|ref|YP_004091103.1| Conserved hypothetical protein ... 97.8 9e-19
gi|295425057|ref|ZP_06817763.1| ABC superfamily ATP binding cass... 97.8 1e-18
gi|268319095|ref|YP_003292751.1| hypothetical protein FI9785_606... 96.7 2e-18
gi|42518651|ref|NP_964581.1| hypothetical protein LJ0729 [Lactob... 96.7 2e-18
gi|338762322|gb|EGP13590.1| YbbM seven transmembrane helix prote... 96.7 2e-18
gi|329666927|gb|AEB92875.1| ABC transporter, permease protein [L... 96.7 2e-18
gi|227890411|ref|ZP_04008216.1| YbbM family protein [Lactobacill... 96.7 2e-18
gi|315037566|ref|YP_004031134.1| ABC transport system permease p... 96.3 3e-18
gi|116629588|ref|YP_814760.1| ABC-type uncharacterized transport... 96.3 3e-18
gi|167038922|ref|YP_001661907.1| hypothetical protein Teth514_02... 95.9 3e-18
gi|227894555|ref|ZP_04012360.1| YbbM family protein [Lactobacill... 95.9 3e-18
gi|297543845|ref|YP_003676147.1| hypothetical protein Tmath_0359... 95.9 4e-18
gi|238853053|ref|ZP_04643445.1| conserved hypothetical protein [... 95.5 5e-18
gi|336054073|ref|YP_004562360.1| YbbM family protein [Lactobacil... 95.5 5e-18
gi|184155496|ref|YP_001843836.1| hypothetical protein LAF_1020 [... 95.1 6e-18
gi|260662903|ref|ZP_05863796.1| conserved hypothetical protein [... 95.1 6e-18
gi|227515021|ref|ZP_03945070.1| YbbM family protein [Lactobacill... 95.1 6e-18
gi|300361621|ref|ZP_07057798.1| ABC superfamily ATP binding cass... 95.1 6e-18
gi|283834184|ref|ZP_06353925.1| ABC transporter, permease protei... 95.1 6e-18
gi|237730481|ref|ZP_04560962.1| conserved hypothetical protein [... 95.1 7e-18
gi|256842761|ref|ZP_05548249.1| conserved hypothetical protein [... 94.7 8e-18
gi|304317257|ref|YP_003852402.1| hypothetical protein Tthe_1823 ... 94.7 8e-18
gi|227877207|ref|ZP_03995281.1| YbbM family protein [Lactobacill... 94.7 8e-18
gi|312977719|ref|ZP_07789466.1| ABC transporter, permease protei... 94.7 9e-18
gi|227519460|ref|ZP_03949509.1| YbbM family protein [Enterococcu... 94.7 9e-18
gi|257090994|ref|ZP_05585355.1| conserved hypothetical protein [... 94.7 9e-18
gi|256957983|ref|ZP_05562154.1| conserved hypothetical protein [... 94.4 9e-18
gi|329577344|gb|EGG58802.1| TIGR00245 family protein [Enterococc... 94.4 1e-17
gi|29377231|ref|NP_816385.1| hypothetical protein EF2757 [Entero... 94.4 1e-17
gi|315148718|gb|EFT92734.1| conserved hypothetical protein TIGR0... 94.4 1e-17
gi|171779222|ref|ZP_02920193.1| hypothetical protein STRINF_0107... 94.4 1e-17
gi|336392158|ref|ZP_08573557.1| transport protein [Lactobacillus... 94.4 1e-17
gi|254479669|ref|ZP_05092968.1| conserved hypothetical protein T... 94.4 1e-17
gi|20806838|ref|NP_622009.1| permease [Thermoanaerobacter tengco... 94.0 1e-17
gi|341820084|emb|CCC56315.1| ABC-type uncharacterized transport ... 94.0 1e-17
>gi|15610137|ref|NP_217516.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15842557|ref|NP_337594.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
CDC1551]
gi|31794177|ref|NP_856670.1| transmembrane protein [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=219
Score = 423 bits (1088), Expect = 7e-117, Method: Compositional matrix adjust.
Identities = 219/219 (100%), Positives = 219/219 (100%), Gaps = 0/219 (0%)
Query 1 MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG 60
MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG
Sbjct 1 MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG 60
Query 61 KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL
Sbjct 61 KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
Query 121 GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM 180
GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM
Sbjct 121 GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM 180
Query 181 YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA 219
YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
Sbjct 181 YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA 219
>gi|340627990|ref|YP_004746442.1| hypothetical protein MCAN_30231 [Mycobacterium canettii CIPT
140010059]
gi|340006180|emb|CCC45354.1| putative conserved transmembrane protein [Mycobacterium canettii
CIPT 140010059]
Length=219
Score = 420 bits (1079), Expect = 8e-116, Method: Compositional matrix adjust.
Identities = 218/219 (99%), Positives = 218/219 (99%), Gaps = 0/219 (0%)
Query 1 MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG 60
MAV GFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG
Sbjct 1 MAVRGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG 60
Query 61 KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL
Sbjct 61 KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
Query 121 GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM 180
GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM
Sbjct 121 GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM 180
Query 181 YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA 219
YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
Sbjct 181 YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA 219
>gi|289444566|ref|ZP_06434310.1| transmembrane protein [Mycobacterium tuberculosis T46]
gi|289417485|gb|EFD14725.1| transmembrane protein [Mycobacterium tuberculosis T46]
Length=170
Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG 60
MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG
Sbjct 1 MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG 60
Query 61 KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL
Sbjct 61 KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
Query 121 GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPG 157
GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPG
Sbjct 121 GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPG 157
>gi|256391568|ref|YP_003113132.1| ABC transporter [Catenulispora acidiphila DSM 44928]
gi|256357794|gb|ACU71291.1| ABC transporter related [Catenulispora acidiphila DSM 44928]
Length=225
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/115 (54%), Positives = 74/115 (65%), Gaps = 0/115 (0%)
Query 6 FLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLD 65
F L V V R ++ V+A GRC+A+ G SG+GKTTLLRL NRL DP SG V LD
Sbjct 4 FDLREVCVERAGHRIIDHVTATIAPGRCTALVGPSGAGKTTLLRLFNRLDDPDSGTVLLD 63
Query 66 GVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL 120
G L LDVL LRRRVGLV Q PV++T +V E+RVG P L + ELL R+ L
Sbjct 64 GAALETLDVLALRRRVGLVGQRPVLVTASVREELRVGAPQLTDDEALELLKRVGL 118
>gi|325572174|ref|ZP_08147241.1| ABC superfamily ATP binding cassette transporter, permease protein
[Enterococcus casseliflavus ATCC 12755]
gi|325155575|gb|EGC67789.1| ABC superfamily ATP binding cassette transporter, permease protein
[Enterococcus casseliflavus ATCC 12755]
Length=254
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 156 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 216 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 253
>gi|315642495|ref|ZP_07897013.1| ABC superfamily ATP binding cassette transporter, permease protein
[Enterococcus italicus DSM 15952]
gi|315482268|gb|EFU72828.1| ABC superfamily ATP binding cassette transporter, permease protein
[Enterococcus italicus DSM 15952]
Length=254
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 156 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 216 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 253
>gi|227550323|ref|ZP_03980372.1| YbbM family protein [Enterococcus faecium TX1330]
gi|227180525|gb|EEI61497.1| YbbM family protein [Enterococcus faecium TX1330]
Length=254
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 156 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 216 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 253
>gi|293552907|ref|ZP_06673563.1| hypothetical protein EfmE1039_0305 [Enterococcus faecium E1039]
gi|291602928|gb|EFF33124.1| hypothetical protein EfmE1039_0305 [Enterococcus faecium E1039]
Length=254
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 156 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 216 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 253
>gi|190606496|ref|YP_001974781.1| putative permease [Enterococcus faecium]
gi|257889183|ref|ZP_05668836.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|293572147|ref|ZP_06683153.1| hypothetical protein EfmE980_1902 [Enterococcus faecium E980]
gi|190350266|emb|CAP62615.1| putative permease [Enterococcus faecium]
gi|257825255|gb|EEV52169.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|291607781|gb|EFF37097.1| hypothetical protein EfmE980_1902 [Enterococcus faecium E980]
Length=254
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 156 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 216 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 253
>gi|257865220|ref|ZP_05644873.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257871544|ref|ZP_05651197.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257799154|gb|EEV28206.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257805708|gb|EEV34530.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length=250
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 152 QVLEKLSLGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 211
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 212 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 249
>gi|257897418|ref|ZP_05677071.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257833983|gb|EEV60404.1| conserved hypothetical protein [Enterococcus faecium Com12]
Length=250
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 152 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 211
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 212 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 249
>gi|257868418|ref|ZP_05648071.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257802582|gb|EEV31404.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length=250
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 152 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 211
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 212 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 249
>gi|257885872|ref|ZP_05665525.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257900275|ref|ZP_05679928.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|257821728|gb|EEV48858.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257838187|gb|EEV63261.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length=250
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 71/98 (73%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + ++A + R +++T + P+ID TK VGL+SLPG MSGLI AG+DP+ A
Sbjct 152 QVLEKLALGANKKQASMSIVRESVKTGMAPSIDRTKTVGLVSLPGMMSGLIFAGIDPVQA 211
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQIVVM++L++ TA+++ + +A R ++ +L+
Sbjct 212 IRYQIVVMFMLISVTAISSFIASYMAYREFYNNRSQLI 249
>gi|294786573|ref|ZP_06751827.1| ABC transporter, permease protein [Parascardovia denticolens
F0305]
gi|315226156|ref|ZP_07867944.1| ABC superfamily ATP binding cassette transporter, permease protein
[Parascardovia denticolens DSM 10105]
gi|294485406|gb|EFG33040.1| ABC transporter, permease protein [Parascardovia denticolens
F0305]
gi|315120288|gb|EFT83420.1| ABC superfamily ATP binding cassette transporter, permease protein
[Parascardovia denticolens DSM 10105]
Length=257
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/101 (47%), Positives = 70/101 (70%), Gaps = 0/101 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A + R +++TA+ P IDS K VGL+SLPG MSGLI AGVDP+ A
Sbjct 155 QVLEKLSLGAPVKAASMSILRRSIKTAMQPTIDSAKTVGLVSLPGMMSGLIFAGVDPVYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLP 213
I+YQI+V ++LL+AT + A+ LA R F++ +L+ +P
Sbjct 215 IKYQIMVTFMLLSATGLGAVIAGYLAHRNYFNKRAQLLEIP 255
>gi|268326440|emb|CBH40028.1| conserved hypothetical membrane protein, UPF0014 family [uncultured
archaeon]
Length=261
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/94 (44%), Positives = 68/94 (73%), Gaps = 0/94 (0%)
Query 116 ARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRY 175
A LCLG S++EA P+ R +++++LIP+IDS K +G+I +PGAM+G+I+ GV+PL A Y
Sbjct 162 ASLCLGASSQEALEPYARQSVKSSLIPSIDSLKTLGVIVIPGAMAGMIIGGVNPLWAAEY 221
Query 176 QIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
Q+++ ++ L+A + + LA++ LF AH+L
Sbjct 222 QLIISFMFLSANILTTILATHLAQKYLFTEAHQL 255
>gi|317131789|ref|YP_004091103.1| Conserved hypothetical protein CHP00245 [Ethanoligenens harbinense
YUAN-3]
gi|315469768|gb|ADU26372.1| Conserved hypothetical protein CHP00245 [Ethanoligenens harbinense
YUAN-3]
Length=254
Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/167 (33%), Positives = 93/167 (56%), Gaps = 14/167 (8%)
Query 60 GKVWLDGVPL-----TDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVG--------RPDL 106
G +W+ + T L VLVL + A + ++ +++ V + D
Sbjct 89 GGLWISFAAIFIGTCTTLAVLVLANAIQYTAYQIIPISGMIVSNAMVALGLCYRHLKADF 148
Query 107 PEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAG 166
+ R E+ +L LG + + R ++RT ++P IDS K +G++SLPG M+GLILAG
Sbjct 149 ADRR-NEVETKLALGADVLPSSINIIRESIRTGMLPTIDSAKTLGIVSLPGTMTGLILAG 207
Query 167 VDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLP 213
+ PLTAI+YQI+V ++LL+ TA+++ L+ R F++ +LV +P
Sbjct 208 ISPLTAIKYQIMVTFMLLSTTAISSFIACYLSYRGFFNKRKQLVPIP 254
>gi|295425057|ref|ZP_06817763.1| ABC superfamily ATP binding cassette transporter, permease protein
[Lactobacillus amylolyticus DSM 11664]
gi|295065254|gb|EFG56156.1| ABC superfamily ATP binding cassette transporter, permease protein
[Lactobacillus amylolyticus DSM 11664]
Length=254
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/97 (47%), Positives = 67/97 (70%), Gaps = 0/97 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L RL LG + A P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ A
Sbjct 155 QILERLALGSDIKTACFPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
I+YQI++ ++LL+AT++ A+ LA R F+ +L
Sbjct 215 IKYQIMITFMLLSATSLGAVIAGYLAYRNYFNERKQL 251
>gi|268319095|ref|YP_003292751.1| hypothetical protein FI9785_606 [Lactobacillus johnsonii FI9785]
gi|262397470|emb|CAX66484.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length=253
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/97 (47%), Positives = 68/97 (71%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 VLERLALGSDIKTASMPIIRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ A+ LA + F+ +L+
Sbjct 216 KYQIMVTFMLLSATSLGAIISVYLAYKNYFNDQMQLM 252
>gi|42518651|ref|NP_964581.1| hypothetical protein LJ0729 [Lactobacillus johnsonii NCC 533]
gi|41582937|gb|AAS08547.1| hypothetical protein LJ_0729 [Lactobacillus johnsonii NCC 533]
Length=253
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/97 (47%), Positives = 68/97 (71%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 VLERLALGSDIKTASMPIIRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ A+ LA + F+ +L+
Sbjct 216 KYQIMVTFMLLSATSLGAIISVYLAYKNYFNDQMQLM 252
>gi|338762322|gb|EGP13590.1| YbbM seven transmembrane helix protein [Lactobacillus johnsonii
pf01]
Length=253
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/97 (47%), Positives = 68/97 (71%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 VLERLALGSDIKTASMPIIRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ A+ LA + F+ +L+
Sbjct 216 KYQIMVTFMLLSATSLGAIISVYLAYKNYFNDQMQLM 252
>gi|329666927|gb|AEB92875.1| ABC transporter, permease protein [Lactobacillus johnsonii DPC
6026]
Length=253
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/97 (47%), Positives = 68/97 (71%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 VLERLALGSDIKTASMPIIRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ A+ LA + F+ +L+
Sbjct 216 KYQIMVTFMLLSATSLGAIISVYLAYKNYFNDQMQLM 252
>gi|227890411|ref|ZP_04008216.1| YbbM family protein [Lactobacillus johnsonii ATCC 33200]
gi|227848980|gb|EEJ59066.1| YbbM family protein [Lactobacillus johnsonii ATCC 33200]
Length=253
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/96 (47%), Positives = 67/96 (70%), Gaps = 0/96 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 VLERLALGSDIKTASMPIIRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
+YQI+V ++LL+AT++ A+ LA + F+ +L
Sbjct 216 KYQIMVTFMLLSATSLGAIISVYLAYKNYFNDQMQL 251
>gi|315037566|ref|YP_004031134.1| ABC transport system permease protein [Lactobacillus amylovorus
GRL 1112]
gi|325956048|ref|YP_004286658.1| ABC transport system permease protein [Lactobacillus acidophilus
30SC]
gi|312275699|gb|ADQ58339.1| putative ABC transport system permease protein [Lactobacillus
amylovorus GRL 1112]
gi|325332613|gb|ADZ06521.1| ABC transport system permease protein [Lactobacillus acidophilus
30SC]
gi|327182862|gb|AEA31309.1| ABC transport system permease protein [Lactobacillus amylovorus
GRL1118]
Length=254
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/99 (46%), Positives = 69/99 (70%), Gaps = 0/99 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG +++ +P R +++TA+ P IDS K VGL++LPG MSGLI AGVDP+ A
Sbjct 155 QVLEKLALGADIKDSSMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVDPVYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVS 211
I+YQI+V ++LL+AT + A+ LA R F+ +L+
Sbjct 215 IKYQIMVTFMLLSATGLGAVIAGYLAYRNYFNARMQLLE 253
>gi|116629588|ref|YP_814760.1| ABC-type uncharacterized transport system, permease component
[Lactobacillus gasseri ATCC 33323]
gi|282852029|ref|ZP_06261387.1| putative membrane protein [Lactobacillus gasseri 224-1]
gi|311110768|ref|ZP_07712165.1| ABC transporter, permease protein [Lactobacillus gasseri MV-22]
gi|116095170|gb|ABJ60322.1| ABC-type uncharacterized transport system, permease component
[Lactobacillus gasseri ATCC 33323]
gi|282556789|gb|EFB62393.1| putative membrane protein [Lactobacillus gasseri 224-1]
gi|311065922|gb|EFQ46262.1| ABC transporter, permease protein [Lactobacillus gasseri MV-22]
Length=253
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/96 (47%), Positives = 66/96 (69%), Gaps = 0/96 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
LL +L LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 LLEKLALGSDIKTASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
+YQI++ ++LL AT++ A+ LA R F+ +L
Sbjct 216 KYQIMITFMLLGATSLGAVIAGYLAYRNYFNERMQL 251
>gi|167038922|ref|YP_001661907.1| hypothetical protein Teth514_0254 [Thermoanaerobacter sp. X514]
gi|300913488|ref|ZP_07130805.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
gi|307723497|ref|YP_003903248.1| hypothetical protein Thet_0296 [Thermoanaerobacter sp. X513]
gi|166853162|gb|ABY91571.1| conserved hypothetical protein 245 [Thermoanaerobacter sp. X514]
gi|300890173|gb|EFK85318.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
gi|307580558|gb|ADN53957.1| Conserved hypothetical protein CHP00245 [Thermoanaerobacter sp.
X513]
Length=251
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/107 (40%), Positives = 70/107 (66%), Gaps = 0/107 (0%)
Query 105 DLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLIL 164
D + + E+ A L LG ++R+A ++A++T +IP +DS K +G++ LPG M+GLIL
Sbjct 142 DEIKNKSEEIEAYLSLGATSRQAAQKVIKTAIKTGMIPTVDSMKTLGIVQLPGMMTGLIL 201
Query 165 AGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVS 211
GVDP+ A++YQI+V ++L + A++ + L R F + H+LVS
Sbjct 202 GGVDPIEAVKYQIMVTFMLASTVAISCFSVTFLTYRNFFTKYHQLVS 248
>gi|227894555|ref|ZP_04012360.1| YbbM family protein [Lactobacillus ultunensis DSM 16047]
gi|227863714|gb|EEJ71135.1| YbbM family protein [Lactobacillus ultunensis DSM 16047]
Length=253
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/99 (44%), Positives = 70/99 (71%), Gaps = 0/99 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + +++ + R +++TA+ P IDS K VGL++LPG MSGLI AGVDP+ A
Sbjct 155 QILEKLALGANIKDSSITILRRSIKTAMQPTIDSVKTVGLVNLPGMMSGLIFAGVDPVYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVS 211
I+YQI+V ++LL+AT + A+ LA + F++ +L+
Sbjct 215 IKYQIMVTFMLLSATGLGAVIAGYLAYKNYFNKRMQLIE 253
>gi|297543845|ref|YP_003676147.1| hypothetical protein Tmath_0359 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841620|gb|ADH60136.1| conserved hypothetical protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length=251
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/107 (40%), Positives = 70/107 (66%), Gaps = 0/107 (0%)
Query 105 DLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLIL 164
D + + E+ A L LG ++R+A ++A++T +IP +DS K +G++ LPG M+GLIL
Sbjct 142 DEIKNKSEEIEAYLSLGATSRQAAQKVIKTAIKTGMIPTVDSMKTLGIVQLPGMMTGLIL 201
Query 165 AGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVS 211
GVDP+ A++YQI+V ++L + A++ + L R F + H+LVS
Sbjct 202 GGVDPIEAVKYQIMVTFMLASTVAISCFSVTFLTYRNFFTKYHQLVS 248
>gi|238853053|ref|ZP_04643445.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|238834301|gb|EEQ26546.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
Length=253
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/96 (46%), Positives = 66/96 (69%), Gaps = 0/96 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
LL ++ LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 LLEKIALGSDIKTASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
+YQI++ ++LL AT++ A+ LA R F+ +L
Sbjct 216 KYQIMITFMLLGATSLGAVIAGYLAYRNYFNERMQL 251
>gi|336054073|ref|YP_004562360.1| YbbM family protein [Lactobacillus kefiranofaciens ZW3]
gi|333957450|gb|AEG40258.1| YbbM family protein [Lactobacillus kefiranofaciens ZW3]
Length=253
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/96 (46%), Positives = 67/96 (70%), Gaps = 0/96 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ AI
Sbjct 156 VLERLALGSDIKMASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPVYAI 215
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
+YQI++ ++LL+AT + A+ LA + F++ +L
Sbjct 216 KYQIMITFMLLSATGLGAVISGYLAYKNYFNKQMQL 251
>gi|184155496|ref|YP_001843836.1| hypothetical protein LAF_1020 [Lactobacillus fermentum IFO 3956]
gi|183226840|dbj|BAG27356.1| conserved hypotehtical protein [Lactobacillus fermentum IFO 3956]
Length=255
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/98 (48%), Positives = 66/98 (68%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A + +++TA+ P+IDS K VGL+SLPG MSGLI AGVDP+ A
Sbjct 156 QVLEKLALGADVKLASQAILKRSIKTAMQPSIDSIKTVGLVSLPGMMSGLIFAGVDPVYA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQI+V ++LLA T A+ L+ R F+ H+LV
Sbjct 216 IRYQIMVSFMLLATTGFGAVISGYLSYRNYFNDRHQLV 253
>gi|260662903|ref|ZP_05863796.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|260552524|gb|EEX25524.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length=255
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/98 (48%), Positives = 66/98 (68%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A + +++TA+ P+IDS K VGL+SLPG MSGLI AGVDP+ A
Sbjct 156 QVLEKLALGADVKLASQAILKRSIKTAMQPSIDSIKTVGLVSLPGMMSGLIFAGVDPVYA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQI+V ++LLA T A+ L+ R F+ H+LV
Sbjct 216 IRYQIMVSFMLLATTGFGAVISGYLSYRNYFNDRHQLV 253
>gi|227515021|ref|ZP_03945070.1| YbbM family protein [Lactobacillus fermentum ATCC 14931]
gi|227086613|gb|EEI21925.1| YbbM family protein [Lactobacillus fermentum ATCC 14931]
Length=255
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/98 (48%), Positives = 66/98 (68%), Gaps = 0/98 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A + +++TA+ P+IDS K VGL+SLPG MSGLI AGVDP+ A
Sbjct 156 QVLEKLALGADVKLASQAILKRSIKTAMQPSIDSIKTVGLVSLPGMMSGLIFAGVDPVYA 215
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
IRYQI+V ++LLA T A+ L+ R F+ H+LV
Sbjct 216 IRYQIMVSFMLLATTGFGAVISGYLSYRNYFNDRHQLV 253
>gi|300361621|ref|ZP_07057798.1| ABC superfamily ATP binding cassette transporter, permease protein
[Lactobacillus gasseri JV-V03]
gi|300354240|gb|EFJ70111.1| ABC superfamily ATP binding cassette transporter, permease protein
[Lactobacillus gasseri JV-V03]
Length=252
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/97 (45%), Positives = 67/97 (70%), Gaps = 0/97 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
+L ++ LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ A
Sbjct 155 SILEKIALGSDIKTASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
I+YQI++ ++LL+AT++ A+ LA R F+ +L
Sbjct 215 IKYQIMITFMLLSATSLGAVIAGYLAYRNYFNERMQL 251
>gi|283834184|ref|ZP_06353925.1| ABC transporter, permease protein [Citrobacter youngae ATCC 29220]
gi|291070335|gb|EFE08444.1| ABC transporter, permease protein [Citrobacter youngae ATCC 29220]
Length=259
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/101 (44%), Positives = 67/101 (67%), Gaps = 0/101 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++ +L LG + + A P R ++R +LIP IDS K VGL+SLPG MSGLI AG+DP+ A
Sbjct 155 QIQEKLSLGATPKVASAPLIRDSIRASLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLP 213
I+YQI+V ++LL+ +++ + L R ++ H+LV P
Sbjct 215 IKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTP 255
>gi|237730481|ref|ZP_04560962.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226906020|gb|EEH91938.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length=259
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/101 (44%), Positives = 67/101 (67%), Gaps = 0/101 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++ +L LG + + A P R ++R +LIP IDS K VGL+SLPG MSGLI AG+DP+ A
Sbjct 155 QIQEKLSLGATPKVASAPLIRDSIRASLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLP 213
I+YQI+V ++LL+ +++ + L R ++ H+LV P
Sbjct 215 IKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTP 255
>gi|256842761|ref|ZP_05548249.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256614181|gb|EEU19382.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
Length=252
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/97 (45%), Positives = 67/97 (70%), Gaps = 0/97 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ A
Sbjct 155 QVLEKLALGSDIKTASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
I+YQI++ ++LL+AT + A+ LA + F+ +L
Sbjct 215 IKYQIMITFMLLSATGLGAVISGYLAYKNYFNDRMQL 251
>gi|304317257|ref|YP_003852402.1| hypothetical protein Tthe_1823 [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778759|gb|ADL69318.1| conserved hypothetical protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length=247
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/106 (40%), Positives = 70/106 (67%), Gaps = 0/106 (0%)
Query 105 DLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLIL 164
D + R E+ L LG ++R+A ++A++T ++P IDS K +G++ LPG M+GLIL
Sbjct 142 DEMKNRRHEIETYLSLGANSRQASQKILKTAIKTGMMPTIDSMKTLGIVQLPGMMTGLIL 201
Query 165 AGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
GVDP+ A++YQ++V +++ + TA+A T A L+ F R H+L+
Sbjct 202 GGVDPVNAVKYQMMVTFMMTSTTAIACFTVALLSYTRFFTRNHQLI 247
>gi|227877207|ref|ZP_03995281.1| YbbM family protein [Lactobacillus crispatus JV-V01]
gi|256848929|ref|ZP_05554363.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|293380206|ref|ZP_06626288.1| conserved hypothetical protein TIGR00245 [Lactobacillus crispatus
214-1]
gi|227863261|gb|EEJ70706.1| YbbM family protein [Lactobacillus crispatus JV-V01]
gi|256714468|gb|EEU29455.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|290923250|gb|EFE00171.1| conserved hypothetical protein TIGR00245 [Lactobacillus crispatus
214-1]
Length=252
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/97 (45%), Positives = 67/97 (70%), Gaps = 0/97 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ A
Sbjct 155 QVLEKLALGSDIKTASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
I+YQI++ ++LL+AT + A+ LA + F+ +L
Sbjct 215 IKYQIMITFMLLSATGLGAVISGYLAYKNYFNDRMQL 251
>gi|312977719|ref|ZP_07789466.1| ABC transporter, permease protein [Lactobacillus crispatus CTV-05]
gi|310895458|gb|EFQ44525.1| ABC transporter, permease protein [Lactobacillus crispatus CTV-05]
Length=252
Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/97 (45%), Positives = 67/97 (70%), Gaps = 0/97 (0%)
Query 113 ELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTA 172
++L +L LG + A +P R +++TA+ P IDS K VGL++LPG MSGLI AGV+P+ A
Sbjct 155 QVLEKLALGSDIKTASMPILRRSIKTAMQPTIDSAKTVGLVNLPGMMSGLIFAGVNPIYA 214
Query 173 IRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
I+YQI++ ++LL+AT + A+ LA + F+ +L
Sbjct 215 IKYQIMITFMLLSATGLGAVISGYLAYKNYFNDRMQL 251
>gi|227519460|ref|ZP_03949509.1| YbbM family protein [Enterococcus faecalis TX0104]
gi|227073072|gb|EEI11035.1| YbbM family protein [Enterococcus faecalis TX0104]
Length=252
Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 69/97 (72%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
++ +L LG + + A LP + +++T + P IDS K VG++SLPG MSGLI AGVDP+ AI
Sbjct 155 VMEKLALGATIKLASLPIIQQSVKTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ ++ LA + +++ +LV
Sbjct 215 KYQIMVTFMLLSATSIGSVIATYLAYKGYYNQQKQLV 251
>gi|257090994|ref|ZP_05585355.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|312902580|ref|ZP_07761786.1| conserved hypothetical protein TIGR00245 [Enterococcus faecalis
TX0635]
gi|256999806|gb|EEU86326.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|310634250|gb|EFQ17533.1| conserved hypothetical protein TIGR00245 [Enterococcus faecalis
TX0635]
gi|315579610|gb|EFU91801.1| conserved hypothetical protein TIGR00245 [Enterococcus faecalis
TX0630]
Length=252
Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 69/97 (72%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
++ +L LG + + A LP + +++T + P IDS K VG++SLPG MSGLI AGVDP+ AI
Sbjct 155 VMEKLALGATIKLASLPIIQQSVKTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ ++ LA + +++ +LV
Sbjct 215 KYQIMVTFMLLSATSIGSVIATYLAYKGYYNQQKQLV 251
>gi|256957983|ref|ZP_05562154.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|300861176|ref|ZP_07107263.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|307276993|ref|ZP_07558103.1| hypothetical protein TIGR00245 [Enterococcus faecalis TX2134]
gi|256948479|gb|EEU65111.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|300850215|gb|EFK77965.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|306506416|gb|EFM75576.1| hypothetical protein TIGR00245 [Enterococcus faecalis TX2134]
gi|315035128|gb|EFT47060.1| conserved hypothetical protein TIGR00245 [Enterococcus faecalis
TX0027]
Length=252
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 69/97 (72%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
++ +L LG + + A LP + +++T + P IDS K VG++SLPG MSGLI AGVDP+ AI
Sbjct 155 VMEKLALGATIKLASLPIIQQSVKTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ ++ LA + +++ +LV
Sbjct 215 KYQIMVTFMLLSATSIGSVIATYLAYKGYYNQQKQLV 251
>gi|329577344|gb|EGG58802.1| TIGR00245 family protein [Enterococcus faecalis TX1467]
Length=252
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 69/97 (72%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
++ +L LG + + A LP + +++T + P IDS K VG++SLPG MSGLI AGVDP+ AI
Sbjct 155 VMEKLALGATIKLASLPIIQQSVKTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ ++ LA + +++ +LV
Sbjct 215 KYQIMVTFMLLSATSIGSVIATYLAYKGYYNQQKQLV 251
>gi|29377231|ref|NP_816385.1| hypothetical protein EF2757 [Enterococcus faecalis V583]
gi|227554240|ref|ZP_03984287.1| YbbM family protein [Enterococcus faecalis HH22]
gi|229544861|ref|ZP_04433586.1| YbbM family protein [Enterococcus faecalis TX1322]
72 more sequence titles
Length=252
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 69/97 (72%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
++ +L LG + + A LP + +++T + P IDS K VG++SLPG MSGLI AGVDP+ AI
Sbjct 155 VMEKLALGATIKLASLPIIQQSVKTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ ++ LA + +++ +LV
Sbjct 215 KYQIMVTFMLLSATSIGSVIATYLAYKGYYNQQKQLV 251
>gi|315148718|gb|EFT92734.1| conserved hypothetical protein TIGR00245 [Enterococcus faecalis
TX4244]
Length=252
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 69/97 (72%), Gaps = 0/97 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
++ +L LG + + A LP + +++T + P IDS K VG++SLPG MSGLI AGVDP+ AI
Sbjct 155 VMEKLALGATIKLASLPIIQQSVKTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+YQI+V ++LL+AT++ ++ LA + +++ +LV
Sbjct 215 KYQIMVTFMLLSATSIGSVIATYLAYKGYYNQQKQLV 251
>gi|171779222|ref|ZP_02920193.1| hypothetical protein STRINF_01070 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|171282278|gb|EDT47705.1| hypothetical protein STRINF_01070 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length=251
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/96 (49%), Positives = 65/96 (68%), Gaps = 0/96 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG +A + R A+RT + P IDS K VGL+SLPG MSGLI AGVDP+ AI
Sbjct 155 VLERLALGAGLLDASIDIVREAIRTGMSPTIDSAKTVGLVSLPGMMSGLIFAGVDPVRAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
RYQI+V ++LL+AT++ ++ LA R ++ +L
Sbjct 215 RYQIMVTFMLLSATSLGSIIACYLAYRNFYNEQKQL 250
>gi|336392158|ref|ZP_08573557.1| transport protein [Lactobacillus coryniformis subsp. torquens
KCTC 3535]
Length=251
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/101 (46%), Positives = 68/101 (68%), Gaps = 0/101 (0%)
Query 110 RVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDP 169
R ++L RL LG R A + R ++RT + P IDS K VG++SLPG MSGLI AGVDP
Sbjct 151 RRQQVLERLALGADLRLASIDIVRESIRTGMAPTIDSAKTVGIVSLPGMMSGLIFAGVDP 210
Query 170 LTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLV 210
+ AI+YQI+V ++LL+AT++ ++ LA + ++ +LV
Sbjct 211 VHAIKYQILVTFMLLSATSIGSVIACYLAYQQFYNEQKQLV 251
>gi|254479669|ref|ZP_05092968.1| conserved hypothetical protein TIGR00245 [Carboxydibrachium pacificum
DSM 12653]
gi|214034396|gb|EEB75171.1| conserved hypothetical protein TIGR00245 [Carboxydibrachium pacificum
DSM 12653]
Length=250
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/105 (40%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 105 DLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLIL 164
D + R E+ A L LG ++R+A + +++T ++P +DS K +G++ LPG M+GLIL
Sbjct 142 DEIKNRQEEIEAYLALGATSRQAAQKVIKMSIKTGMMPTVDSMKTLGIVQLPGMMTGLIL 201
Query 165 AGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
GVDP+TA++YQI+V ++L + A++ T L R F + H+L
Sbjct 202 GGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFFTKQHQL 246
>gi|20806838|ref|NP_622009.1| permease [Thermoanaerobacter tengcongensis MB4]
gi|20515305|gb|AAM23613.1| predicted permease [Thermoanaerobacter tengcongensis MB4]
Length=250
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/105 (40%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 105 DLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLIL 164
D + R E+ A L LG ++R+A + +++T ++P +DS K +G++ LPG M+GLIL
Sbjct 142 DEIKNRQEEIEAYLALGATSRQAAQKVIKMSIKTGMMPTVDSMKTLGIVQLPGMMTGLIL 201
Query 165 AGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
GVDP+TA++YQI+V ++L + A++ T L R F + H+L
Sbjct 202 GGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFFTKQHQL 246
>gi|341820084|emb|CCC56315.1| ABC-type uncharacterized transport system, permease component
[Weissella thailandensis fsh4-2]
Length=251
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/96 (49%), Positives = 65/96 (68%), Gaps = 0/96 (0%)
Query 114 LLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAI 173
+L RL LG +A + R A+RT + P IDS K VGL+SLPG MSGLI AGVDP+ AI
Sbjct 155 VLERLALGAGLLDASIAIVREAIRTGMSPTIDSAKTVGLVSLPGMMSGLIFAGVDPVRAI 214
Query 174 RYQIVVMYLLLAATAVAALTCARLAERALFDRAHRL 209
RYQI+V ++LL+AT++ ++ LA R ++ +L
Sbjct 215 RYQIMVTFMLLSATSLGSIIACYLAYRNFYNEQKQL 250
Lambda K H
0.325 0.138 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 270223565960
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40