BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3004
Length=112
Score E
Sequences producing significant alignments: (Bits) Value
gi|148824194|ref|YP_001288948.1| low molecular weight protein an... 219 7e-56
gi|289553206|ref|ZP_06442416.1| low molecular weight protein ant... 219 2e-55
gi|15610141|ref|NP_217520.1| low molecular weight protein antige... 218 2e-55
gi|340627994|ref|YP_004746446.1| low molecular weight protein an... 212 1e-53
gi|254233086|ref|ZP_04926413.1| low molecular weight protein ant... 189 9e-47
gi|240168935|ref|ZP_04747594.1| low molecular weight protein ant... 187 4e-46
gi|254819126|ref|ZP_05224127.1| low molecular weight protein ant... 180 6e-44
gi|296171272|ref|ZP_06852676.1| low molecular weight protein ant... 179 1e-43
gi|342858172|ref|ZP_08714827.1| low molecular weight protein ant... 159 2e-37
gi|183981721|ref|YP_001850012.1| low molecular weight protein an... 154 4e-36
gi|118617537|ref|YP_905869.1| low molecular weight protein antig... 152 2e-35
gi|336459184|gb|EGO38131.1| Protein of unknown function (DUF2581... 152 2e-35
gi|254776274|ref|ZP_05217790.1| low molecular weight protein ant... 150 7e-35
gi|118464680|ref|YP_883016.1| low molecular weight protein antig... 149 1e-34
gi|167967827|ref|ZP_02550104.1| low molecular weight protein ant... 148 3e-34
gi|333991365|ref|YP_004523979.1| hypothetical protein JDM601_272... 146 9e-34
gi|126434473|ref|YP_001070164.1| low molecular weight protein an... 138 2e-31
gi|108798873|ref|YP_639070.1| low molecular weight protein antig... 138 3e-31
gi|118470748|ref|YP_886713.1| low molecular weight protein antig... 125 2e-27
gi|315445149|ref|YP_004078028.1| hypothetical protein Mspyr1_358... 122 2e-26
gi|145224819|ref|YP_001135497.1| hypothetical protein Mflv_4240 ... 120 5e-26
gi|120403113|ref|YP_952942.1| low molecular weight protein antig... 114 4e-24
gi|169630405|ref|YP_001704054.1| hypothetical protein MAB_3324 [... 101 3e-20
gi|226305883|ref|YP_002765843.1| hypothetical protein RER_23960 ... 97.4 5e-19
gi|229493387|ref|ZP_04387176.1| conserved hypothetical protein [... 94.4 5e-18
gi|325675886|ref|ZP_08155570.1| low molecular weight protein ant... 94.0 6e-18
gi|312140495|ref|YP_004007831.1| integral membrane protein [Rhod... 93.6 8e-18
gi|226365947|ref|YP_002783730.1| hypothetical protein ROP_65380 ... 93.6 9e-18
gi|111023446|ref|YP_706418.1| hypothetical protein RHA1_ro06485 ... 93.2 1e-17
gi|326381538|ref|ZP_08203232.1| hypothetical protein SCNU_01265 ... 85.9 2e-15
gi|333920861|ref|YP_004494442.1| hypothetical protein AS9A_3197 ... 76.6 1e-12
gi|262203121|ref|YP_003274329.1| hypothetical protein Gbro_3231 ... 71.2 5e-11
gi|319948232|ref|ZP_08022388.1| hypothetical protein ES5_02744 [... 70.1 1e-10
gi|325003704|ref|ZP_08124816.1| hypothetical protein PseP1_33293... 68.2 4e-10
gi|227503917|ref|ZP_03933966.1| conserved hypothetical protein [... 67.4 7e-10
gi|172040431|ref|YP_001800145.1| hypothetical protein cur_0751 [... 66.6 1e-09
gi|340794745|ref|YP_004760208.1| hypothetical protein CVAR_1783 ... 66.6 1e-09
gi|296140559|ref|YP_003647802.1| hypothetical protein Tpau_2865 ... 65.9 2e-09
gi|343926853|ref|ZP_08766346.1| hypothetical protein GOALK_072_0... 65.1 4e-09
gi|54026204|ref|YP_120446.1| hypothetical protein nfa42330 [Noca... 64.7 4e-09
gi|25027919|ref|NP_737973.1| hypothetical protein CE1363 [Coryne... 63.2 1e-08
gi|334564283|ref|ZP_08517274.1| hypothetical protein CbovD2_0689... 62.0 3e-08
gi|227832953|ref|YP_002834660.1| hypothetical protein cauri_1129... 61.2 4e-08
gi|300781357|ref|ZP_07091211.1| conserved hypothetical protein [... 61.2 4e-08
gi|134102597|ref|YP_001108258.1| hypothetical protein SACE_6160 ... 61.2 5e-08
gi|213964736|ref|ZP_03392936.1| conserved hypothetical protein [... 60.8 6e-08
gi|227501749|ref|ZP_03931798.1| conserved hypothetical protein [... 60.8 7e-08
gi|300783606|ref|YP_003763897.1| hypothetical protein AMED_1684 ... 60.5 8e-08
gi|331695667|ref|YP_004331906.1| hypothetical protein Psed_1819 ... 60.5 9e-08
gi|336325927|ref|YP_004605893.1| hypothetical protein CRES_1374 ... 60.1 1e-07
>gi|148824194|ref|YP_001288948.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
F11]
gi|254365639|ref|ZP_04981684.1| hypothetical protein TBHG_02936 [Mycobacterium tuberculosis str.
Haarlem]
gi|289746810|ref|ZP_06506188.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
02_1987]
34 more sequence titles
Length=125
Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV
Sbjct 14 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 73
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR
Sbjct 74 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 125
>gi|289553206|ref|ZP_06442416.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
KZN 605]
gi|289437838|gb|EFD20331.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
KZN 605]
Length=115
Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV
Sbjct 4 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 63
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR
Sbjct 64 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 115
>gi|15610141|ref|NP_217520.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
tuberculosis H37Rv]
gi|31794181|ref|NP_856674.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
bovis AF2122/97]
gi|121638886|ref|YP_979110.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium bovis
BCG str. Pasteur 1173P2]
36 more sequence titles
Length=112
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV
Sbjct 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR
Sbjct 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
>gi|340627994|ref|YP_004746446.1| low molecular weight protein antigen 6 [Mycobacterium canettii
CIPT 140010059]
gi|340006184|emb|CCC45358.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
canettii CIPT 140010059]
Length=112
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/112 (98%), Positives = 109/112 (98%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHFAVGFLTLGLLVPVL WPVSAPLLVIPVALSASI RLRTLADERGVTVRTLVGSRAV
Sbjct 1 MAHFAVGFLTLGLLVPVLIWPVSAPLLVIPVALSASISRLRTLADERGVTVRTLVGSRAV 60
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLP LTEASSGRVPNPYR
Sbjct 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPQLTEASSGRVPNPYR 112
>gi|254233086|ref|ZP_04926413.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
C]
gi|124602145|gb|EAY61155.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
C]
Length=98
Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 96/98 (98%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
Query 15 VPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGS 74
+PVLTWPVSAPLLVIP+ALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGS
Sbjct 1 MPVLTWPVSAPLLVIPMALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGS 60
Query 75 WARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
WARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR
Sbjct 61 WARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 98
>gi|240168935|ref|ZP_04747594.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium kansasii
ATCC 12478]
Length=125
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/112 (84%), Positives = 102/112 (92%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGF TLGLL+PVL WP SAPLL+IPV LSA I+RLRT+AD+ GVTVRTL+GSR V
Sbjct 14 IAHLAVGFATLGLLIPVLAWPPSAPLLLIPVLLSALIVRLRTVADDDGVTVRTLLGSRTV 73
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARA LKDGTELRLPAVTF+TLP LTEASSGR+PNPYR
Sbjct 74 RWDDIDGLRFHRGSWARARLKDGTELRLPAVTFSTLPQLTEASSGRIPNPYR 125
>gi|254819126|ref|ZP_05224127.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium intracellulare
ATCC 13950]
Length=118
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/112 (78%), Positives = 100/112 (90%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGFL LGLL+PV+ WP SAPLL+IPV LSA I+RLRT+AD+RGVTVRTL+GS+ V
Sbjct 7 IAHLAVGFLALGLLIPVMLWPPSAPLLIIPVVLSAMIVRLRTVADDRGVTVRTLLGSQTV 66
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARA LK G ELRLPAV+F+TLP LT AS+GRVPNPY+
Sbjct 67 RWDDIDGLRFHRGSWARARLKSGAELRLPAVSFSTLPELTAASAGRVPNPYQ 118
>gi|296171272|ref|ZP_06852676.1| low molecular weight protein antigen [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894240|gb|EFG73997.1| low molecular weight protein antigen [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=129
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/111 (79%), Positives = 99/111 (90%), Gaps = 0/111 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGF+TLGLL+PV+ WP SAPLL+IPV LSA I+RLRT+AD+RGVTVRTL+G RAV
Sbjct 18 IAHLAVGFVTLGLLIPVMLWPPSAPLLLIPVVLSAMIVRLRTVADDRGVTVRTLLGGRAV 77
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
RWD+IDGLRFHRGSWARA L+ G +LRLPAVTFATLP L E SSGRVPNPY
Sbjct 78 RWDEIDGLRFHRGSWARAHLRSGAQLRLPAVTFATLPQLAEVSSGRVPNPY 128
>gi|342858172|ref|ZP_08714827.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium colombiense
CECT 3035]
gi|342133876|gb|EGT87056.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium colombiense
CECT 3035]
Length=112
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/112 (80%), Positives = 98/112 (88%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAH AVGFLTLGLL+PV+ WP S PLL++PV LSA I+RLRT+ADE+GVTVRTL GSR V
Sbjct 1 MAHLAVGFLTLGLLIPVMLWPPSLPLLILPVLLSAMIVRLRTVADEQGVTVRTLFGSRRV 60
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSW RA L GTELRLPAVTF+TLP LTEAS+GRVPNPY
Sbjct 61 RWDDIDGLRFHRGSWGRAHLNSGTELRLPAVTFSTLPELTEASAGRVPNPYE 112
>gi|183981721|ref|YP_001850012.1| low molecular weight protein antigen 6, Cfp6 [Mycobacterium marinum
M]
gi|183175047|gb|ACC40157.1| low molecular weight protein antigen 6, Cfp6 [Mycobacterium marinum
M]
Length=125
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/112 (78%), Positives = 98/112 (88%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGF TLGLL+PVL WP SAPLL++PV +SA IIRLRT+ADE GVT RTL+GS V
Sbjct 14 IAHLAVGFATLGLLIPVLAWPPSAPLLLLPVLVSALIIRLRTVADENGVTARTLLGSTTV 73
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
WDDI+GLRF+RGSWARA L++G ELRLPAVTFATLP LTEASSGRVPNPYR
Sbjct 74 AWDDIEGLRFNRGSWARAQLRNGGELRLPAVTFATLPQLTEASSGRVPNPYR 125
>gi|118617537|ref|YP_905869.1| low molecular weight protein antigen 6, Cfp6 [Mycobacterium ulcerans
Agy99]
gi|118569647|gb|ABL04398.1| low molecular weight protein antigen 6, Cfp6 [Mycobacterium ulcerans
Agy99]
Length=119
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/112 (77%), Positives = 98/112 (88%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGF TLGLL+PVL WP SAPLL++PV +SA IIR+RT+ADE GVT RTL+GS V
Sbjct 8 IAHLAVGFATLGLLIPVLAWPPSAPLLLLPVLVSALIIRVRTVADENGVTARTLLGSTTV 67
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
WDDI+GLRF+RGSWARA L++G ELRLPAVTFATLP LTEASSGRVPNPYR
Sbjct 68 AWDDIEGLRFNRGSWARAQLRNGGELRLPAVTFATLPQLTEASSGRVPNPYR 119
>gi|336459184|gb|EGO38131.1| Protein of unknown function (DUF2581) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=115
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/112 (80%), Positives = 100/112 (90%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGFLTLGLL+PV+ WP SAPLL++PV LSA I+RLRT+AD+RGVTVRTL+ SR V
Sbjct 4 VAHLAVGFLTLGLLIPVMLWPPSAPLLLLPVLLSALIVRLRTVADDRGVTVRTLLDSRTV 63
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARA LK G ELRLPAVTFATLP LT AS+GRVPNPY+
Sbjct 64 RWDDIDGLRFHRGSWARARLKSGDELRLPAVTFATLPELTRASAGRVPNPYQ 115
>gi|254776274|ref|ZP_05217790.1| low molecular weight protein antigen 6 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=119
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/112 (79%), Positives = 99/112 (89%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGFLTLGLL+PV+ WP SAPLL++PV LSA I+RLRT+AD+ GVTVRTL+ SR V
Sbjct 8 VAHLAVGFLTLGLLIPVMLWPPSAPLLLLPVLLSALIVRLRTVADDHGVTVRTLLDSRTV 67
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARA LK G ELRLPAVTFATLP LT AS+GRVPNPY+
Sbjct 68 RWDDIDGLRFHRGSWARARLKSGDELRLPAVTFATLPELTRASAGRVPNPYQ 119
>gi|118464680|ref|YP_883016.1| low molecular weight protein antigen 6 [Mycobacterium avium 104]
gi|118165967|gb|ABK66864.1| Low molecular weight protein antigen 6 [Mycobacterium avium 104]
Length=115
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/112 (79%), Positives = 99/112 (89%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
+AH AVGFLTLGLL+PV+ WP SAPLL++PV LSA I+RLRT+AD+ GVTVRTL+ SR V
Sbjct 4 VAHLAVGFLTLGLLIPVMLWPPSAPLLLLPVLLSALIVRLRTVADDHGVTVRTLLDSRTV 63
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
RWDDIDGLRFHRGSWARA LK G ELRLPAVTFATLP LT AS+GRVPNPY+
Sbjct 64 RWDDIDGLRFHRGSWARARLKSGDELRLPAVTFATLPELTRASAGRVPNPYQ 115
>gi|167967827|ref|ZP_02550104.1| low molecular weight protein antigen 6 cfp6 [Mycobacterium tuberculosis
H37Ra]
Length=136
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/76 (99%), Positives = 75/76 (99%), Gaps = 0/76 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV
Sbjct 14 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 73
Query 61 RWDDIDGLRFHRGSWA 76
RWDDIDGLRFHRGSW
Sbjct 74 RWDDIDGLRFHRGSWG 89
>gi|333991365|ref|YP_004523979.1| hypothetical protein JDM601_2725 [Mycobacterium sp. JDM601]
gi|333487333|gb|AEF36725.1| low molecular weight protein antigen 6 Cfp6 [Mycobacterium sp.
JDM601]
Length=129
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/112 (75%), Positives = 96/112 (86%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHFAVGFLTLGLL+PV+TWP++APLL++PV SA I+R RT+AD + VTVRTL GSR+V
Sbjct 18 MAHFAVGFLTLGLLIPVMTWPLTAPLLLLPVLFSALIVRWRTVADAQQVTVRTLRGSRSV 77
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
WDDI GL F RGSWARA L++G LRLPAV+FATLP LTEAS GRVPNPYR
Sbjct 78 SWDDIAGLGFSRGSWARAHLRNGERLRLPAVSFATLPLLTEASGGRVPNPYR 129
>gi|126434473|ref|YP_001070164.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
sp. JLS]
gi|126234273|gb|ABN97673.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
sp. JLS]
Length=132
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/112 (66%), Positives = 85/112 (76%), Gaps = 1/112 (0%)
Query 2 AHFAVGFLTLGLLVPVLTWPV-SAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
AH AVGF TLGLL VL P A LLVIPV S I+RLRT+AD VT R L+GS+ V
Sbjct 21 AHLAVGFFTLGLLSIVLANPRWFAVLLVIPVVASVYIMRLRTVADRDTVTARNLLGSQTV 80
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
WD+I+GLRF + +WARAT KDG+E+RLPAVTF++LP LT AS GRVPNPYR
Sbjct 81 AWDEIEGLRFSKANWARATRKDGSEMRLPAVTFSSLPQLTAASGGRVPNPYR 132
>gi|108798873|ref|YP_639070.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
sp. MCS]
gi|119867988|ref|YP_937940.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
sp. KMS]
gi|108769292|gb|ABG08014.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
sp. MCS]
gi|119694077|gb|ABL91150.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
sp. KMS]
Length=132
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/112 (66%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query 2 AHFAVGFLTLGLLVPVLTWPV-SAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
AH AVGF TLGLL VL P A LLVIPV S I+RLRT+AD VT R L+GS+ V
Sbjct 21 AHLAVGFFTLGLLSIVLANPRWFAVLLVIPVVASVFIMRLRTVADRDTVTARNLLGSQTV 80
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
WD+I+GLRF + +WARAT KDG+E+RLPAVTF+ LP LT AS GRVPNPYR
Sbjct 81 SWDEIEGLRFSKANWARATRKDGSEMRLPAVTFSNLPQLTAASGGRVPNPYR 132
>gi|118470748|ref|YP_886713.1| low molecular weight protein antigen 6 [Mycobacterium smegmatis
str. MC2 155]
gi|118172035|gb|ABK72931.1| Low molecular weight protein antigen 6 [Mycobacterium smegmatis
str. MC2 155]
Length=129
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/112 (61%), Positives = 80/112 (72%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWP-VSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
MAH AV +TLGLL +LT P + LL+IP+ LS +IIRL+T AD VT R+L+GS+
Sbjct 17 MAHLAVAVVTLGLLTVILTNPPLFGVLLLIPIGLSLAIIRLQTKADRNTVTARSLLGSQT 76
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
V W DI+GLRF RG WA A G +LRLPAVTFATLP L E S GRVPNPY
Sbjct 77 VPWSDIEGLRFERGRWAVAQRTTGEDLRLPAVTFATLPLLAEVSGGRVPNPY 128
>gi|315445149|ref|YP_004078028.1| hypothetical protein Mspyr1_35850 [Mycobacterium sp. Spyr1]
gi|315263452|gb|ADU00194.1| hypothetical protein Mspyr1_35850 [Mycobacterium sp. Spyr1]
Length=113
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/113 (60%), Positives = 79/113 (70%), Gaps = 1/113 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLL-VIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
MAH AVGFLT+ LL VL P+ LL +IP +S ++ R RT+AD VT RTL G +
Sbjct 1 MAHVAVGFLTVALLAVVLAGPIWFLLLFLIPAGVSYAVARYRTVADRDTVTARTLFGKQT 60
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
VRW+DI GLRF R +WA A +DG+EL LP VTFATLP LT AS GRVPNPY
Sbjct 61 VRWEDIHGLRFGRQAWAVARRRDGSELTLPGVTFATLPVLTAASGGRVPNPYE 113
>gi|145224819|ref|YP_001135497.1| hypothetical protein Mflv_4240 [Mycobacterium gilvum PYR-GCK]
gi|145217305|gb|ABP46709.1| hypothetical protein Mflv_4240 [Mycobacterium gilvum PYR-GCK]
Length=188
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/112 (60%), Positives = 79/112 (71%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLL-VIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
MAH AVGFLT+ LL VL P+ LL +IP +S ++ R RT+AD VT RTL G +
Sbjct 76 MAHVAVGFLTVALLAVVLAGPIWFLLLFLIPAGVSYAVARYRTVADRDTVTARTLFGKQT 135
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
VRW+DI GLRF R +WA A +DG+EL LP VTFATLP LT AS GRVPNPY
Sbjct 136 VRWEDIHGLRFGRQAWAVARRRDGSELTLPGVTFATLPVLTAASGGRVPNPY 187
>gi|120403113|ref|YP_952942.1| low molecular weight protein antigen 6 [Mycobacterium vanbaalenii
PYR-1]
gi|119955931|gb|ABM12936.1| low molecular weight protein antigen 6 (CFP-6) [Mycobacterium
vanbaalenii PYR-1]
Length=113
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/112 (59%), Positives = 79/112 (71%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPV-SAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
MAH A+GFL++ LL V P L +IP+ LS ++R RT+AD VT RT++ S+
Sbjct 1 MAHVAIGFLSVALLAVVFAGPAWFILLFLIPLLLSIFVMRYRTVADRDTVTARTMLRSKT 60
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
VRWDDIDGLRF R +WA A +DGTEL LPAVTF+TLP L AS GRVPNPY
Sbjct 61 VRWDDIDGLRFGRTAWAVAQRRDGTELSLPAVTFSTLPRLAAASGGRVPNPY 112
>gi|169630405|ref|YP_001704054.1| hypothetical protein MAB_3324 [Mycobacterium abscessus ATCC 19977]
gi|169242372|emb|CAM63400.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=130
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/112 (52%), Positives = 76/112 (68%), Gaps = 0/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAV 60
MAHF GFL LG+L VL P+ APLL+IP+ LS +I R RT + +RTL ++ V
Sbjct 14 MAHFVTGFLALGMLSFVLALPILAPLLLIPIGLSYAIARYRTAVNAESAQIRTLTSTKTV 73
Query 61 RWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPYR 112
W I+GL F + +WA+A L DG+ +R P VTF+TLP L+ AS+GRVPNPY
Sbjct 74 PWSQIEGLTFDKHAWAQAKLTDGSTIRFPGVTFSTLPILSAASNGRVPNPYE 125
>gi|226305883|ref|YP_002765843.1| hypothetical protein RER_23960 [Rhodococcus erythropolis PR4]
gi|226185000|dbj|BAH33104.1| hypothetical protein RER_23960 [Rhodococcus erythropolis PR4]
Length=171
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/112 (43%), Positives = 67/112 (60%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAP-LLVIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
+A+ A FL + P+ WPV+ LL++P+ + RLRT G+ VR+ R
Sbjct 22 LAYMACAFLLFAVSFPIFGWPVAFSWLLILPIIAVYLVARLRTTVSPDGLEVRSTFSKRT 81
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ WDD+ G RF + SWARA L DGTE+ LPAV+F LP + AS GR+ +PY
Sbjct 82 LAWDDVKGFRFPKRSWARAELTDGTEVTLPAVSFVRLPEIAIASGGRITDPY 133
>gi|229493387|ref|ZP_04387176.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229319703|gb|EEN85535.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=149
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/108 (44%), Positives = 64/108 (60%), Gaps = 1/108 (0%)
Query 5 AVGFLTLGLLVPVLTWPVSAP-LLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWD 63
A FL + P+ WPV+ LL++P+ + RLRT G+ VR+ R + WD
Sbjct 2 ACAFLLFAVSFPIFGWPVAFSWLLILPIIAVYLVARLRTTVSPDGLEVRSTFSKRTLAWD 61
Query 64 DIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
D+ G RF + SWARA L DGTE+ LPAV+F LP + AS GR+ +PY
Sbjct 62 DVKGFRFPKRSWARAELTDGTEVTLPAVSFVRLPEIAIASGGRITDPY 109
>gi|325675886|ref|ZP_08155570.1| low molecular weight protein antigen [Rhodococcus equi ATCC 33707]
gi|325553857|gb|EGD23535.1| low molecular weight protein antigen [Rhodococcus equi ATCC 33707]
Length=184
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/112 (46%), Positives = 66/112 (59%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVS-APLLVIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
+A A FL L PVL WP + A LVIP + A ++R+RT G+ +R S++
Sbjct 39 LALIACIFLLFCLSFPVLGWPAAFAWTLVIPFLIGAWVLRVRTTVTPDGLELRRAFSSQS 98
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ WD + G RF + WARA L DGTE+ LP VTF LP L AS GRV +PY
Sbjct 99 ISWDQVKGFRFPKRGWARADLVDGTEVSLPTVTFGRLPQLASASGGRVTDPY 150
>gi|312140495|ref|YP_004007831.1| integral membrane protein [Rhodococcus equi 103S]
gi|311889834|emb|CBH49151.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=167
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/112 (46%), Positives = 66/112 (59%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVS-APLLVIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
+A A FL L PVL WP + A LVIP + A ++R+RT G+ +R S++
Sbjct 22 LALIACIFLLFCLSFPVLGWPAAFAWTLVIPFLIGAWVLRVRTTVTPDGLELRRAFSSQS 81
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ WD + G RF + WARA L DGTE+ LP VTF LP L AS GRV +PY
Sbjct 82 ISWDQVKGFRFPKRGWARADLVDGTEVSLPTVTFGRLPQLASASGGRVTDPY 133
>gi|226365947|ref|YP_002783730.1| hypothetical protein ROP_65380 [Rhodococcus opacus B4]
gi|226244437|dbj|BAH54785.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=165
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/112 (44%), Positives = 65/112 (59%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVI-PVALSASIIRLRTLADERGVTVRTLVGSRA 59
+A+ FL + P+ WP + LVI P+ A + R+RT G+ VR L G R+
Sbjct 22 LAYLGCAFLLFAVSFPIFGWPAAFGWLVIAPILAVAWVARVRTTVTPDGLAVRRLFGGRS 81
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ W +I G RF WARATL DG E+ LPAVTF LP + EAS GR+ +PY
Sbjct 82 LTWSEITGFRFPNRGWARATLADGGEVALPAVTFDRLPDIAEASGGRITDPY 133
>gi|111023446|ref|YP_706418.1| hypothetical protein RHA1_ro06485 [Rhodococcus jostii RHA1]
gi|110822976|gb|ABG98260.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=237
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/112 (43%), Positives = 65/112 (59%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLVI-PVALSASIIRLRTLADERGVTVRTLVGSRA 59
+A+ FL + P+ WP + LVI P+ A + R+RT G+ VR L G R+
Sbjct 94 LAYLGCAFLLFAVSFPIFGWPAAFGWLVIAPIVAVAWVARVRTTVTPDGLEVRRLFGGRS 153
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ W +I G RF + WARATL DG E+ LP VTF LP + EAS GR+ +PY
Sbjct 154 LAWSEITGFRFPKRGWARATLTDGGEVTLPVVTFDRLPDIAEASGGRITDPY 205
>gi|326381538|ref|ZP_08203232.1| hypothetical protein SCNU_01265 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199785|gb|EGD56965.1| hypothetical protein SCNU_01265 [Gordonia neofelifaecis NRRL
B-59395]
Length=142
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/117 (45%), Positives = 70/117 (60%), Gaps = 11/117 (9%)
Query 1 MAHFAV--GFLT----LGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTL 54
+A+FAV GFL +G+ V W V V+P+AL+ I RLRT DE+GVT
Sbjct 20 LAYFAVPIGFLLVVMLMGVSVAGFAWTV-----VVPIALAWWIHRLRTEVDEQGVTAVGT 74
Query 55 VGSRAVRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ + W D+DG+RF R R DGTE RLPAV F+ LP L++AS GR+P+P+
Sbjct 75 FSTHRLPWHDVDGIRFPRWGAVRLVSHDGTEFRLPAVGFSDLPALSKASGGRIPDPF 131
>gi|333920861|ref|YP_004494442.1| hypothetical protein AS9A_3197 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483082|gb|AEF41642.1| hypothetical protein AS9A_3197 [Amycolicicoccus subflavus DQS3-9A1]
Length=125
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/81 (47%), Positives = 52/81 (65%), Gaps = 0/81 (0%)
Query 29 IPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTELRL 88
IP+ L+ I+R+RT E + +RTL G+R + W DI GL F + ARA L DG+ + L
Sbjct 38 IPIVLAIWILRVRTRVSESAIDIRTLRGTRHISWSDIKGLTFPKYKSARAVLHDGSSVPL 97
Query 89 PAVTFATLPHLTEASSGRVPN 109
PAVTF LP +T S GR+P+
Sbjct 98 PAVTFNDLPKITPLSGGRIPD 118
>gi|262203121|ref|YP_003274329.1| hypothetical protein Gbro_3231 [Gordonia bronchialis DSM 43247]
gi|262086468|gb|ACY22436.1| hypothetical protein Gbro_3231 [Gordonia bronchialis DSM 43247]
Length=170
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/86 (41%), Positives = 53/86 (62%), Gaps = 0/86 (0%)
Query 27 LVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTEL 86
L++P+ + I RLRT+ E G+ G+R V W D+ G++F R + RA DG +
Sbjct 78 LIVPILVGLWIHRLRTVVTEDGLQAVGTFGTREVAWADLAGMQFPRWTAVRAVRTDGDRV 137
Query 87 RLPAVTFATLPHLTEASSGRVPNPYR 112
RLPA+ F LP L+ AS GR+P+P++
Sbjct 138 RLPAIGFDDLPRLSVASGGRIPDPFK 163
>gi|319948232|ref|ZP_08022388.1| hypothetical protein ES5_02744 [Dietzia cinnamea P4]
gi|319438107|gb|EFV93071.1| hypothetical protein ES5_02744 [Dietzia cinnamea P4]
Length=136
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/112 (37%), Positives = 62/112 (56%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAPLLV-IPVALSASIIRLRTLADERGVTVRTLVGSRA 59
M++ + L + +L PV +P++ LV IPVA + + R RT DERGV + T R+
Sbjct 17 MSYIVIAILVVAILWPVAAYPLALGWLVLIPVAFAWWVARTRTRLDERGVHLSTWRSRRS 76
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
V WD + G+ F + +AR L + V+F LP L+ AS GR+ +PY
Sbjct 77 VPWDRVKGVMFPKKGFARLVTTSDDSLPMGGVSFHDLPRLSAASRGRIRDPY 128
>gi|325003704|ref|ZP_08124816.1| hypothetical protein PseP1_33293 [Pseudonocardia sp. P1]
Length=171
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/84 (46%), Positives = 51/84 (61%), Gaps = 0/84 (0%)
Query 27 LVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTEL 86
L++P+A+ ++ +RT D + VR+L GSR VRWDD+ GL R S A L D TEL
Sbjct 85 LLVPIAIIGRVLWVRTTVDPDSLRVRSLRGSRTVRWDDVRGLSLARRSSVTALLADDTEL 144
Query 87 RLPAVTFATLPHLTEASSGRVPNP 110
LP+V LP L AS GR+ +P
Sbjct 145 VLPSVRVRDLPALALASGGRITDP 168
>gi|227503917|ref|ZP_03933966.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
gi|227199540|gb|EEI79588.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
Length=187
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/106 (35%), Positives = 58/106 (55%), Gaps = 7/106 (6%)
Query 5 AVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVR-TLVGSRAVRWD 63
A+ L++G L W LL++PV +++ RT E+G+ + GS+ + WD
Sbjct 42 AIALLSIGWAPKYLAW-----LLIVPVLCIWWVLKSRTRVSEKGIAISYAFKGSQNISWD 96
Query 64 DIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPN 109
+ G+ F R A A K G + LP VTF +LP L++AS GR+P+
Sbjct 97 NFAGIGFQRAK-AFARTKSGKQFTLPGVTFNSLPRLSDASRGRIPD 141
>gi|172040431|ref|YP_001800145.1| hypothetical protein cur_0751 [Corynebacterium urealyticum DSM
7109]
gi|171851735|emb|CAQ04711.1| hypothetical protein cu0751 [Corynebacterium urealyticum DSM
7109]
Length=224
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (35%), Positives = 58/108 (54%), Gaps = 6/108 (5%)
Query 4 FAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLV-GSRAVRW 62
F + + G V W PLL I +I+ T DE+G+T + L+ S+ V W
Sbjct 45 FLISLIFTGYNVAAFFWIPLLPLLFI-----VWVIKAGTRVDEQGITAKPLIRPSKTVAW 99
Query 63 DDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNP 110
D G+RF++ A A D ++ LP ++F +LP L EA++GR+P+P
Sbjct 100 QDFQGIRFNKAGKAYAAAIDDSQFWLPGISFNSLPALAEATAGRIPDP 147
>gi|340794745|ref|YP_004760208.1| hypothetical protein CVAR_1783 [Corynebacterium variabile DSM
44702]
gi|340534655|gb|AEK37135.1| hypothetical protein CVAR_1783 [Corynebacterium variabile DSM
44702]
Length=178
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/86 (44%), Positives = 52/86 (61%), Gaps = 1/86 (1%)
Query 26 LLVIPVALSASIIRLRTLADERGVTVRTLV-GSRAVRWDDIDGLRFHRGSWARATLKDGT 84
L V+P+ I+R RT ++G+T R L S ++ W+D D LRF RG A A DGT
Sbjct 24 LPVLPLLFIVWILRSRTTFYDKGITARYLFRKSASLAWEDFDALRFTRGGKALAVRTDGT 83
Query 85 ELRLPAVTFATLPHLTEASSGRVPNP 110
LP V+F +L L+EA+ GR+P+P
Sbjct 84 SFPLPGVSFNSLIDLSEATEGRIPDP 109
>gi|296140559|ref|YP_003647802.1| hypothetical protein Tpau_2865 [Tsukamurella paurometabola DSM
20162]
gi|296028693|gb|ADG79463.1| hypothetical protein Tpau_2865 [Tsukamurella paurometabola DSM
20162]
Length=167
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/103 (36%), Positives = 59/103 (58%), Gaps = 6/103 (5%)
Query 7 GFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDID 66
G ++GL VL W LL++P+ + I+R+RT+ G+ + GS ++ W+D+
Sbjct 67 GNASVGL--QVLGWA----LLLVPILFAVWILRVRTVIGPDGIRSVRVAGSDSIAWEDLS 120
Query 67 GLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPN 109
G+R A DG+E+RLPAVT + LP + AS GR+P+
Sbjct 121 GIRLANNGAVYAVRTDGSEVRLPAVTLSQLPRVATASGGRIPD 163
>gi|343926853|ref|ZP_08766346.1| hypothetical protein GOALK_072_00750 [Gordonia alkanivorans NBRC
16433]
gi|343763213|dbj|GAA13272.1| hypothetical protein GOALK_072_00750 [Gordonia alkanivorans NBRC
16433]
Length=148
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/87 (42%), Positives = 49/87 (57%), Gaps = 0/87 (0%)
Query 26 LLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTE 85
L V PVAL I RLRT+ E GV + + + W +I GL+F + S RA DG
Sbjct 55 LFVAPVALYMWIHRLRTVVTEDGVRAVGALSTTELPWSEIAGLQFPKWSSVRAVRPDGER 114
Query 86 LRLPAVTFATLPHLTEASSGRVPNPYR 112
++LPA+ F LP L S GR+P+P+
Sbjct 115 VKLPAIGFRDLPVLNVVSKGRIPDPFE 141
>gi|54026204|ref|YP_120446.1| hypothetical protein nfa42330 [Nocardia farcinica IFM 10152]
gi|54017712|dbj|BAD59082.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=201
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/112 (36%), Positives = 64/112 (58%), Gaps = 1/112 (0%)
Query 1 MAHFAVGFLTLGLLVPVLTWPVSAP-LLVIPVALSASIIRLRTLADERGVTVRTLVGSRA 59
+A+ V L L + + + WP LL+IPVA++ + R RT+ G+ +RT+ GSR
Sbjct 41 LAYLGVVVLALCVFLFFVGWPAGLWWLLLIPVAVAVWVARTRTVVTGDGLELRTVFGSRR 100
Query 60 VRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNPY 111
+ W I G+ + +ARA L D + + LPAV++ L L AS GR+P+ +
Sbjct 101 LDWAQIKGVSIPKRGFARAHLADDSTVALPAVSYDQLRKLIAASRGRLPDVF 152
>gi|25027919|ref|NP_737973.1| hypothetical protein CE1363 [Corynebacterium efficiens YS-314]
gi|259506313|ref|ZP_05749215.1| low molecular weight protein antigen [Corynebacterium efficiens
YS-314]
gi|23493202|dbj|BAC18173.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166093|gb|EEW50647.1| low molecular weight protein antigen [Corynebacterium efficiens
YS-314]
Length=228
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/105 (36%), Positives = 58/105 (56%), Gaps = 7/105 (6%)
Query 6 VGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVR-TLVGSRAVRWDD 64
+ LT+G L W +L+ P + +++ T+ D G+ R G++A+ WDD
Sbjct 41 ISLLTIGAAPQYLWW-----ILIFPALIIWWVLKSATVVDGTGIEARYAFRGNKAIAWDD 95
Query 65 IDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPN 109
G+ F +G+ A DGTE+ LP VTF +LP L +AS GR+P+
Sbjct 96 FAGIGF-KGARTFARTTDGTEISLPGVTFNSLPRLQQASYGRIPD 139
>gi|334564283|ref|ZP_08517274.1| hypothetical protein CbovD2_06893 [Corynebacterium bovis DSM
20582]
Length=194
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/108 (38%), Positives = 56/108 (52%), Gaps = 6/108 (5%)
Query 4 FAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVG-SRAVRW 62
F + + G L W PLL PV + ++R RT D+ G+ R L+ S +V W
Sbjct 32 FLMCLMFAGFAPAYLFW---VPLL--PVLFAVWVLRERTTVDDDGIGARYLLRRSASVTW 86
Query 63 DDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNP 110
D +RF R A DGT RLP V+F +L L+EA+ GR+P+P
Sbjct 87 ADFRSIRFARNGRGYAVRADGTRFRLPGVSFNSLVTLSEATHGRIPDP 134
>gi|227832953|ref|YP_002834660.1| hypothetical protein cauri_1129 [Corynebacterium aurimucosum
ATCC 700975]
gi|262182560|ref|ZP_06041981.1| hypothetical protein CaurA7_01069 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453969|gb|ACP32722.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=177
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/106 (35%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query 5 AVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRT-LVGSRAVRWD 63
A+ FL++G L W +L+ PV ++R RT D G+ + G + + W
Sbjct 36 AIAFLSIGWAPKYLFW-----ILIFPVLAIWWVLRARTTVDSTGIHITYGFRGPKHIEWK 90
Query 64 DIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPN 109
D G+ F R S A A G LP VTF +LP L AS+GR+P+
Sbjct 91 DFQGIGFQR-SKAYARTTKGDNFNLPGVTFNSLPRLAAASNGRIPD 135
>gi|300781357|ref|ZP_07091211.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533064|gb|EFK54125.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=161
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/111 (35%), Positives = 65/111 (59%), Gaps = 11/111 (9%)
Query 5 AVGFLTLGLLVPVLTWPVSAP-----LLVIPVALSASIIRLRTLADERGVTVRTLVGSR- 58
AVG L +G+ + ++W AP LL+ P+ A + +T + G+ + L
Sbjct 17 AVG-LIMGIALIGISW---APQYLGWLLIFPILFLAWVFTAKTHVSDHGLELTYLFRKNV 72
Query 59 AVRWDDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPN 109
++ WDD++G+ F G+ A+AT+ DG++ +P VTF +LP L+EAS GR+ +
Sbjct 73 SIDWDDLEGVSF-EGAGAKATVADGSQYAMPGVTFNSLPALSEASGGRITD 122
>gi|134102597|ref|YP_001108258.1| hypothetical protein SACE_6160 [Saccharopolyspora erythraea NRRL
2338]
gi|291004718|ref|ZP_06562691.1| hypothetical protein SeryN2_09374 [Saccharopolyspora erythraea
NRRL 2338]
gi|133915220|emb|CAM05333.1| hypothetical protein SACE_6160 [Saccharopolyspora erythraea NRRL
2338]
Length=211
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/84 (42%), Positives = 45/84 (54%), Gaps = 0/84 (0%)
Query 26 LLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGSWARATLKDGTE 85
L +IP+AL ++R RT D VT R ++GS WD+I R W RA L G E
Sbjct 34 LYLIPLALVVWVLRTRTTIDATHVTTRRVLGSTRFGWDEIASFRLDERRWLRAVLNSGKE 93
Query 86 LRLPAVTFATLPHLTEASSGRVPN 109
+ LPAV LP L S GR+P+
Sbjct 94 VVLPAVRVRDLPRLAAISGGRIPD 117
>gi|213964736|ref|ZP_03392936.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213952929|gb|EEB64311.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=172
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/108 (35%), Positives = 57/108 (53%), Gaps = 1/108 (0%)
Query 4 FAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVT-VRTLVGSRAVRW 62
F V F+ + ++ P A + P+ + I R+RT RG+T V L R+V W
Sbjct 23 FIVAFMLVLCVIATGFAPWLAVTFLAPLIYTLWIFRVRTTIGPRGITAVYLLSKRRSVPW 82
Query 63 DDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNP 110
D G+ F++G A A K + LPA++F +LP L EA+ G +P+P
Sbjct 83 SDFAGIFFNKGGRAFAVTKSDERIALPAISFNSLPELKEATGGLIPDP 130
>gi|227501749|ref|ZP_03931798.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
gi|306835928|ref|ZP_07468921.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|227077774|gb|EEI15737.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
gi|304568202|gb|EFM43774.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length=180
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/105 (35%), Positives = 57/105 (55%), Gaps = 7/105 (6%)
Query 6 VGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVR-TLVGSRAVRWDD 64
+ L++G L W LL+IPV +++ RT E+G+++ + ++ WDD
Sbjct 36 IALLSIGWAPKYLGW-----LLIIPVIGLWWVLKARTRVSEKGISISYAFRKNVSIAWDD 90
Query 65 IDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPN 109
G+ F R A A K+G + LP VTF +LP L +AS GR+P+
Sbjct 91 FAGIGFQRAR-AFAQTKNGAKHNLPGVTFNSLPRLAQASRGRIPD 134
>gi|300783606|ref|YP_003763897.1| hypothetical protein AMED_1684 [Amycolatopsis mediterranei U32]
gi|299793120|gb|ADJ43495.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340524996|gb|AEK40201.1| hypothetical protein RAM_08555 [Amycolatopsis mediterranei S699]
Length=173
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/96 (37%), Positives = 52/96 (55%), Gaps = 5/96 (5%)
Query 15 VPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFHRGS 74
+P L W L + P+AL+ ++R RT+A G+ VRT+ G R + W + GL + S
Sbjct 66 IPYLQW-----LYLFPIALAVFVVRHRTIATRSGLAVRTMFGHRDIPWSALKGLAITKKS 120
Query 75 WARATLKDGTELRLPAVTFATLPHLTEASSGRVPNP 110
+A L D T++ LP V LP L+ S G V +P
Sbjct 121 RVQAVLHDDTKVPLPTVRTRHLPVLSLVSEGLVADP 156
>gi|331695667|ref|YP_004331906.1| hypothetical protein Psed_1819 [Pseudonocardia dioxanivorans
CB1190]
gi|326950356|gb|AEA24053.1| hypothetical protein Psed_1819 [Pseudonocardia dioxanivorans
CB1190]
Length=139
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/90 (42%), Positives = 47/90 (53%), Gaps = 5/90 (5%)
Query 26 LLVIPVALSASIIRLRTLADERGVTVRTLVGSRAVRWDDIDGLRFH-----RGSWARATL 80
++P+A++ I R RT+ D V VR G R V W +I LR RG+ A L
Sbjct 47 FYLVPLAIAWWIARTRTVVDSEAVAVRRAFGGRRVPWAEISSLRLQPATRSRGARVSAVL 106
Query 81 KDGTELRLPAVTFATLPHLTEASSGRVPNP 110
G EL LPAVT L L AS GR+P+P
Sbjct 107 TGGGELLLPAVTVRDLSQLAAASGGRLPDP 136
>gi|336325927|ref|YP_004605893.1| hypothetical protein CRES_1374 [Corynebacterium resistens DSM
45100]
gi|336101909|gb|AEI09729.1| hypothetical protein CRES_1374 [Corynebacterium resistens DSM
45100]
Length=198
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (33%), Positives = 58/108 (54%), Gaps = 6/108 (5%)
Query 4 FAVGFLTLGLLVPVLTWPVSAPLLVIPVALSASIIRLRTLADERGVTVRTLV-GSRAVRW 62
F + + G + W PLL I ++R+RT+ +G++ R L+ S ++ W
Sbjct 46 FLICLMFTGYNIKWFFWVPVLPLLFI-----VWVLRVRTVVGPQGISTRYLLRKSDSLDW 100
Query 63 DDIDGLRFHRGSWARATLKDGTELRLPAVTFATLPHLTEASSGRVPNP 110
++ +RF++G AT D L LP V+F +L L+EAS GR+P+P
Sbjct 101 ENFKSIRFNKGGKGFATSNDDDMLWLPGVSFNSLATLSEASDGRIPDP 148
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128047486336
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40