BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3008

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610145|ref|NP_217524.1|  hypothetical protein Rv3008 [Mycoba...   420    7e-116
gi|148824198|ref|YP_001288952.1|  hypothetical protein TBFG_13023...   418    2e-115
gi|340627998|ref|YP_004746450.1|  hypothetical protein MCAN_30311...   416    9e-115
gi|339295842|gb|AEJ47953.1|  hypothetical protein CCDC5079_2763 [...   389    2e-106
gi|308375958|ref|ZP_07445655.2|  hypothetical protein TMGG_02550 ...   325    3e-87 
gi|167967822|ref|ZP_02550099.1|  hypothetical protein MtubH3_0723...   302    2e-80 
gi|221201097|ref|ZP_03574137.1|  putative membrane protein [Burkh...  40.8    0.13  
gi|154420390|ref|XP_001583210.1|  F5/8 type C domain containing p...  39.3    0.40  
gi|339482550|ref|YP_004694336.1|  putative DNA repair protein [Ni...  37.7    0.92  
gi|170692106|ref|ZP_02883270.1|  hypothetical protein BgramDRAFT_...  36.6    2.5   
gi|118577270|ref|YP_899510.1|  hypothetical protein Ppro_3665 [Pe...  36.2    3.2   
gi|163859078|ref|YP_001633376.1|  hypothetical protein Bpet4757 [...  35.8    4.0   
gi|225874898|ref|YP_002756357.1|  MgtC family protein [Acidobacte...  35.4    5.1   
gi|299136520|ref|ZP_07029703.1|  MgtC/SapB transporter [Acidobact...  35.0    6.5   


>gi|15610145|ref|NP_217524.1| hypothetical protein Rv3008 [Mycobacterium tuberculosis H37Rv]
 gi|15842566|ref|NP_337603.1| hypothetical protein MT3088 [Mycobacterium tuberculosis CDC1551]
 gi|31794185|ref|NP_856678.1| hypothetical protein Mb3033 [Mycobacterium bovis AF2122/97]
 47 more sequence titles
 
gi|121638890|ref|YP_979114.1| hypothetical protein BCG_3030 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148662859|ref|YP_001284382.1| hypothetical protein MRA_3038 [Mycobacterium tuberculosis H37Ra]
 gi|224991382|ref|YP_002646071.1| hypothetical protein JTY_3025 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797897|ref|YP_003030898.1| hypothetical protein TBMG_00962 [Mycobacterium tuberculosis KZN 
1435]
 gi|254233090|ref|ZP_04926417.1| hypothetical protein TBCG_02946 [Mycobacterium tuberculosis C]
 gi|254365643|ref|ZP_04981688.1| hypothetical protein TBHG_02940 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289444574|ref|ZP_06434318.1| hypothetical protein TBLG_01676 [Mycobacterium tuberculosis T46]
 gi|289448682|ref|ZP_06438426.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553202|ref|ZP_06442412.1| hypothetical protein TBXG_00952 [Mycobacterium tuberculosis KZN 
605]
 gi|289571210|ref|ZP_06451437.1| hypothetical protein TBJG_02629 [Mycobacterium tuberculosis T17]
 gi|289575716|ref|ZP_06455943.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289746814|ref|ZP_06506192.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751688|ref|ZP_06511066.1| hypothetical protein TBDG_02034 [Mycobacterium tuberculosis T92]
 gi|289755126|ref|ZP_06514504.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289759134|ref|ZP_06518512.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289763189|ref|ZP_06522567.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294993901|ref|ZP_06799592.1| hypothetical protein Mtub2_05138 [Mycobacterium tuberculosis 
210]
 gi|297635636|ref|ZP_06953416.1| hypothetical protein MtubK4_16012 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732634|ref|ZP_06961752.1| hypothetical protein MtubKR_16172 [Mycobacterium tuberculosis 
KZN R506]
 gi|298526479|ref|ZP_07013888.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|313659966|ref|ZP_07816846.1| hypothetical protein MtubKV_16172 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339633015|ref|YP_004724657.1| hypothetical protein MAF_30140 [Mycobacterium africanum GM041182]
 gi|2791605|emb|CAA16093.1| HYPOTHETICAL PROTEIN Rv3008 [Mycobacterium tuberculosis H37Rv]
 gi|13882878|gb|AAK47417.1| hypothetical protein MT3088 [Mycobacterium tuberculosis CDC1551]
 gi|31619780|emb|CAD96720.1| HYPOTHETICAL PROTEIN Mb3033 [Mycobacterium bovis AF2122/97]
 gi|121494538|emb|CAL73019.1| Hypothetical protein BCG_3030 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124602149|gb|EAY61159.1| hypothetical protein TBCG_02946 [Mycobacterium tuberculosis C]
 gi|134151156|gb|EBA43201.1| hypothetical protein TBHG_02940 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148507011|gb|ABQ74820.1| hypothetical protein MRA_3038 [Mycobacterium tuberculosis H37Ra]
 gi|224774497|dbj|BAH27303.1| hypothetical protein JTY_3025 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253319400|gb|ACT24003.1| hypothetical protein TBMG_00962 [Mycobacterium tuberculosis KZN 
1435]
 gi|289417493|gb|EFD14733.1| hypothetical protein TBLG_01676 [Mycobacterium tuberculosis T46]
 gi|289421640|gb|EFD18841.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289437834|gb|EFD20327.1| hypothetical protein TBXG_00952 [Mycobacterium tuberculosis KZN 
605]
 gi|289540147|gb|EFD44725.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289544964|gb|EFD48612.1| hypothetical protein TBJG_02629 [Mycobacterium tuberculosis T17]
 gi|289687342|gb|EFD54830.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289692275|gb|EFD59704.1| hypothetical protein TBDG_02034 [Mycobacterium tuberculosis T92]
 gi|289695713|gb|EFD63142.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710695|gb|EFD74711.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714698|gb|EFD78710.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298496273|gb|EFI31567.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326904622|gb|EGE51555.1| hypothetical protein TBPG_02530 [Mycobacterium tuberculosis W-148]
 gi|328457674|gb|AEB03097.1| hypothetical protein TBSG_00968 [Mycobacterium tuberculosis KZN 
4207]
 gi|339332371|emb|CCC28084.1| hypothetical protein MAF_30140 [Mycobacterium africanum GM041182]
 gi|341602929|emb|CCC65607.1| hypothetical protein BCGM_3014 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220843|gb|AEN01474.1| hypothetical protein MTCTRI2_3070 [Mycobacterium tuberculosis 
CTRI-2]
Length=207

 Score =  420 bits (1079),  Expect = 7e-116, Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%), Gaps = 0/207 (0%)

Query  1    MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60
            MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI
Sbjct  1    MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60

Query  61   TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG  120
            TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG
Sbjct  61   TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG  120

Query  121  SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD  180
            SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD
Sbjct  121  SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD  180

Query  181  RAATIGTLNVYRRNSPDGDEPLPADGN  207
            RAATIGTLNVYRRNSPDGDEPLPADGN
Sbjct  181  RAATIGTLNVYRRNSPDGDEPLPADGN  207


>gi|148824198|ref|YP_001288952.1| hypothetical protein TBFG_13023 [Mycobacterium tuberculosis F11]
 gi|148722725|gb|ABR07350.1| hypothetical protein TBFG_13023 [Mycobacterium tuberculosis F11]
Length=207

 Score =  418 bits (1075),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 206/207 (99%), Positives = 207/207 (100%), Gaps = 0/207 (0%)

Query  1    MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60
            MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI
Sbjct  1    MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60

Query  61   TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG  120
            TAAGLVSGARIGPGAAAKRDPQLAQWN+IRSHYQEIAEWIDHDTATAHPAVAATQISAAG
Sbjct  61   TAAGLVSGARIGPGAAAKRDPQLAQWNKIRSHYQEIAEWIDHDTATAHPAVAATQISAAG  120

Query  121  SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD  180
            SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD
Sbjct  121  SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD  180

Query  181  RAATIGTLNVYRRNSPDGDEPLPADGN  207
            RAATIGTLNVYRRNSPDGDEPLPADGN
Sbjct  181  RAATIGTLNVYRRNSPDGDEPLPADGN  207


>gi|340627998|ref|YP_004746450.1| hypothetical protein MCAN_30311 [Mycobacterium canettii CIPT 
140010059]
 gi|340006188|emb|CCC45362.1| hypothetical protein MCAN_30311 [Mycobacterium canettii CIPT 
140010059]
Length=207

 Score =  416 bits (1070),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 205/207 (99%), Positives = 206/207 (99%), Gaps = 0/207 (0%)

Query  1    MLTVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60
            MLTVVAVIGILECGL+LHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI
Sbjct  1    MLTVVAVIGILECGLLLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60

Query  61   TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG  120
            TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG
Sbjct  61   TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAG  120

Query  121  SFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD  180
            SFGRANMVDYLGLLDSRADETVRR EFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD
Sbjct  121  SFGRANMVDYLGLLDSRADETVRRGEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYD  180

Query  181  RAATIGTLNVYRRNSPDGDEPLPADGN  207
            RAATIGTLNVYRRNSPDGDEPLPADGN
Sbjct  181  RAATIGTLNVYRRNSPDGDEPLPADGN  207


>gi|339295842|gb|AEJ47953.1| hypothetical protein CCDC5079_2763 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299455|gb|AEJ51565.1| hypothetical protein CCDC5180_2728 [Mycobacterium tuberculosis 
CCDC5180]
Length=192

 Score =  389 bits (999),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 191/192 (99%), Positives = 192/192 (100%), Gaps = 0/192 (0%)

Query  16   VLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAITAAGLVSGARIGPGA  75
            +LHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAITAAGLVSGARIGPGA
Sbjct  1    MLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAITAAGLVSGARIGPGA  60

Query  76   AAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANMVDYLGLLD  135
            AAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANMVDYLGLLD
Sbjct  61   AAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANMVDYLGLLD  120

Query  136  SRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYDRAATIGTLNVYRRNS  195
            SRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYDRAATIGTLNVYRRNS
Sbjct  121  SRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRHAYDRAATIGTLNVYRRNS  180

Query  196  PDGDEPLPADGN  207
            PDGDEPLPADGN
Sbjct  181  PDGDEPLPADGN  192


>gi|308375958|ref|ZP_07445655.2| hypothetical protein TMGG_02550 [Mycobacterium tuberculosis SUMu007]
 gi|308344699|gb|EFP33550.1| hypothetical protein TMGG_02550 [Mycobacterium tuberculosis SUMu007]
Length=162

 Score =  325 bits (833),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 161/162 (99%), Positives = 162/162 (100%), Gaps = 0/162 (0%)

Query  46   VWRGDRVATPLAVAITAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTA  105
            +WRGDRVATPLAVAITAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTA
Sbjct  1    MWRGDRVATPLAVAITAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTA  60

Query  106  TAHPAVAATQISAAGSFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSV  165
            TAHPAVAATQISAAGSFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSV
Sbjct  61   TAHPAVAATQISAAGSFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSV  120

Query  166  DAATIALPEFRHAYDRAATIGTLNVYRRNSPDGDEPLPADGN  207
            DAATIALPEFRHAYDRAATIGTLNVYRRNSPDGDEPLPADGN
Sbjct  121  DAATIALPEFRHAYDRAATIGTLNVYRRNSPDGDEPLPADGN  162


>gi|167967822|ref|ZP_02550099.1| hypothetical protein MtubH3_07237 [Mycobacterium tuberculosis 
H37Ra]
 gi|254552088|ref|ZP_05142535.1| hypothetical protein Mtube_16816 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|308232314|ref|ZP_07415641.2| hypothetical protein TMAG_01215 [Mycobacterium tuberculosis SUMu001]
 22 more sequence titles
 
gi|308369930|ref|ZP_07419552.2| hypothetical protein TMBG_03159 [Mycobacterium tuberculosis SUMu002]
 gi|308371202|ref|ZP_07424176.2| hypothetical protein TMCG_02263 [Mycobacterium tuberculosis SUMu003]
 gi|308372319|ref|ZP_07428216.2| hypothetical protein TMDG_00208 [Mycobacterium tuberculosis SUMu004]
 gi|308373602|ref|ZP_07433007.2| hypothetical protein TMEG_02279 [Mycobacterium tuberculosis SUMu005]
 gi|308374751|ref|ZP_07437250.2| hypothetical protein TMFG_00209 [Mycobacterium tuberculosis SUMu006]
 gi|308377194|ref|ZP_07441461.2| hypothetical protein TMHG_02219 [Mycobacterium tuberculosis SUMu008]
 gi|308378164|ref|ZP_07481746.2| hypothetical protein TMIG_02515 [Mycobacterium tuberculosis SUMu009]
 gi|308379382|ref|ZP_07486082.2| hypothetical protein TMJG_02003 [Mycobacterium tuberculosis SUMu010]
 gi|308380544|ref|ZP_07490300.2| hypothetical protein TMKG_03444 [Mycobacterium tuberculosis SUMu011]
 gi|308406031|ref|ZP_07494848.2| hypothetical protein TMLG_01509 [Mycobacterium tuberculosis SUMu012]
 gi|308214352|gb|EFO73751.1| hypothetical protein TMAG_01215 [Mycobacterium tuberculosis SUMu001]
 gi|308325996|gb|EFP14847.1| hypothetical protein TMBG_03159 [Mycobacterium tuberculosis SUMu002]
 gi|308329526|gb|EFP18377.1| hypothetical protein TMCG_02263 [Mycobacterium tuberculosis SUMu003]
 gi|308333665|gb|EFP22516.1| hypothetical protein TMDG_00208 [Mycobacterium tuberculosis SUMu004]
 gi|308337023|gb|EFP25874.1| hypothetical protein TMEG_02279 [Mycobacterium tuberculosis SUMu005]
 gi|308340836|gb|EFP29687.1| hypothetical protein TMFG_00209 [Mycobacterium tuberculosis SUMu006]
 gi|308348649|gb|EFP37500.1| hypothetical protein TMHG_02219 [Mycobacterium tuberculosis SUMu008]
 gi|308353375|gb|EFP42226.1| hypothetical protein TMIG_02515 [Mycobacterium tuberculosis SUMu009]
 gi|308357220|gb|EFP46071.1| hypothetical protein TMJG_02003 [Mycobacterium tuberculosis SUMu010]
 gi|308361173|gb|EFP50024.1| hypothetical protein TMKG_03444 [Mycobacterium tuberculosis SUMu011]
 gi|308364766|gb|EFP53617.1| hypothetical protein TMLG_01509 [Mycobacterium tuberculosis SUMu012]
 gi|323718389|gb|EGB27563.1| hypothetical protein TMMG_03536 [Mycobacterium tuberculosis CDC1551A]
Length=150

 Score =  302 bits (774),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 149/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%)

Query  58   VAITAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQIS  117
            +AITAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQIS
Sbjct  1    MAITAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQIS  60

Query  118  AAGSFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRH  177
            AAGSFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRH
Sbjct  61   AAGSFGRANMVDYLGLLDSRADETVRRDEFSRWLSAKPDYLVTTEQSVDAATIALPEFRH  120

Query  178  AYDRAATIGTLNVYRRNSPDGDEPLPADGN  207
            AYDRAATIGTLNVYRRNSPDGDEPLPADGN
Sbjct  121  AYDRAATIGTLNVYRRNSPDGDEPLPADGN  150


>gi|221201097|ref|ZP_03574137.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221206451|ref|ZP_03579464.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221173760|gb|EEE06194.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221178947|gb|EEE11354.1| putative membrane protein [Burkholderia multivorans CGD2M]
Length=487

 Score = 40.8 bits (94),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 87/204 (43%), Gaps = 23/204 (11%)

Query  15   LVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAV----AITAAGLVSGAR  70
            + L +P N  WY  P+  +++    + S  G +R   +   LA+     + AA  +  A 
Sbjct  292  VFLRIP-NYHWYYAPFFYFLL----LFSALGTYRVIEMLVKLAIRQKTYLLAAVPMISAT  346

Query  71   IGPGAAAKR--DPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANMV  128
            +  GA   +  D +   ++     Y+ I  WI+ D    +  VAA +I   G +G   ++
Sbjct  347  VAFGAYNLKLADIERGSFDP----YKNIGIWIN-DNTPRNAVVAAAEIGTVGWYGNRYII  401

Query  129  DYLGLLDSRADETVRRDEFSRWLSA-KPDYLVTTEQ--SVDAATIALPEFRHAY---DRA  182
            D LGL +    + +   +   WL+   PDY++  E     +AAT  L     AY    R 
Sbjct  402  DILGLTNKYNADFIANKDVHSWLTKYSPDYILVHEPLWPFEAATSCLTR-TAAYAPAPRF  460

Query  183  ATIGTLNVYRRNSPDGDEPLPADG  206
               G   + +   PD +E + A G
Sbjct  461  NFPGYQLLVKSTEPDTNERITACG  484


>gi|154420390|ref|XP_001583210.1| F5/8 type C domain containing protein [Trichomonas vaginalis 
G3]
 gi|121917450|gb|EAY22224.1| F5/8 type C domain containing protein [Trichomonas vaginalis 
G3]
Length=1128

 Score = 39.3 bits (90),  Expect = 0.40, Method: Composition-based stats.
 Identities = 19/56 (34%), Positives = 27/56 (49%), Gaps = 0/56 (0%)

Query  61   TAAGLVSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQI  116
            TA   ++G R G  A    +  +AQWNEIR  Y E   ++D D    H     T++
Sbjct  270  TAGACLTGIRWGKNAGLDLNVAMAQWNEIRDLYLEYLGYVDDDPNPVHKKQYGTRV  325


>gi|339482550|ref|YP_004694336.1| putative DNA repair protein [Nitrosomonas sp. Is79A3]
 gi|338804695|gb|AEJ00937.1| putative DNA repair protein [Nitrosomonas sp. Is79A3]
Length=921

 Score = 37.7 bits (86),  Expect = 0.92, Method: Compositional matrix adjust.
 Identities = 32/113 (29%), Positives = 45/113 (40%), Gaps = 17/113 (15%)

Query  73   PGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANMVDYLG  132
            P A + R  Q+ QW  +R     + EW+D +    H AV AT+ + A   G   +   L 
Sbjct  714  PNALSGRFAQIEQWRLLRL----VREWLDEEKKRGHFAVIATEETRAIRIGELVLNARLD  769

Query  133  LLDSRA-------DETVRRDEFSRWLSAKPD------YLVTTEQSVDAATIAL  172
             +D          D   R+      L  +PD      YLV TE    AA +A 
Sbjct  770  RVDELEDGQHIVIDYKTRKQSVQTMLGERPDEPQLPLYLVMTEVQQQAAGVAF  822


>gi|170692106|ref|ZP_02883270.1| hypothetical protein BgramDRAFT_2079 [Burkholderia graminis C4D1M]
 gi|170143390|gb|EDT11554.1| hypothetical protein BgramDRAFT_2079 [Burkholderia graminis C4D1M]
Length=490

 Score = 36.6 bits (83),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 35/153 (23%), Positives = 61/153 (40%), Gaps = 13/153 (8%)

Query  15   LVLHMPDNDLWYCGP----WTLWVMAGRGVASGAGVWRGDRVATPLAVAITAAGLVSGAR  70
            + LH+P N  WY  P    W L+V  G          R    A  + + +  A  +  A 
Sbjct  293  VFLHIP-NYHWYYAPFYFFWLLFVSVGAWKVLKFTYVRSQESAVFMTLFL--AFFLITAA  349

Query  71   IGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANMVDY  130
             G  +    + Q    +     Y+ I  W+  +T   +  +A  +I   G +    ++D 
Sbjct  350  FGYRSFQISNVQRGSMDA----YRNIGGWLKDNTVN-NSVIAMVEIGTVGWYSHRYIIDI  404

Query  131  LGLLDSRADETVRRDEFSRWLSA-KPDYLVTTE  162
            LGL +    + + R +   WLS   PDY++  +
Sbjct  405  LGLTNRYNADYIARGDVYSWLSKYSPDYILVHQ  437


>gi|118577270|ref|YP_899510.1| hypothetical protein Ppro_3665 [Pelobacter propionicus DSM 2379]
 gi|118504775|gb|ABL01257.1| protein of unknown function DUF955 [Pelobacter propionicus DSM 
2379]
Length=372

 Score = 36.2 bits (82),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 40/154 (26%), Positives = 59/154 (39%), Gaps = 32/154 (20%)

Query  66   VSGARIGPGAAAKRDPQLAQWNEIRSHYQEIAEWIDH------------DTATAHPAVAA  113
            VS   +    AAKRD  LA      +   E+A WI+H            D     P  AA
Sbjct  78   VSFRALSSMTAAKRDSALAAG----ALAVELASWIEHRFVLPGWKLTDVDFRGYQPEAAA  133

Query  114  TQISAAGSFGRANMVDYLGLLD-------SRADETVRRDEFSRWLSAKPDYLVTTEQSVD  166
              + +    G   + + + LL+       S A++    D FS W  A P   + T +S +
Sbjct  134  ASVRSHWGLGERPIKNTVHLLEANGVRVFSLAEDCKEVDAFSYWQEATPFIFLNTMKSGE  193

Query  167  AATIALPEFRHAYDRAATIGTLNVYRRNSPDGDE  200
                     R  +D    +G L ++R   PDG E
Sbjct  194  ---------RSRFDAMHELGHLILHRHGGPDGRE  218


>gi|163859078|ref|YP_001633376.1| hypothetical protein Bpet4757 [Bordetella petrii DSM 12804]
 gi|163262806|emb|CAP45109.1| unnamed protein product [Bordetella petrii]
Length=477

 Score = 35.8 bits (81),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 20/55 (37%), Positives = 27/55 (50%), Gaps = 3/55 (5%)

Query  73   PGAAAKRDPQLAQWNEIRSHYQEIAEWIDHDTATAHPAVAATQISAAGSFGRANM  127
            P   A  D  L    E+R HYQ  ++W+   +A    A+AA QI A  SF R  +
Sbjct  6    PAPTAAYDEMLDAHGEVRPHYQAFSQWLSQQSAD---AMAARQIEADLSFRRVGI  57


>gi|225874898|ref|YP_002756357.1| MgtC family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791858|gb|ACO31948.1| MgtC family protein [Acidobacterium capsulatum ATCC 51196]
Length=227

 Score = 35.4 bits (80),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 20/58 (35%), Positives = 29/58 (50%), Gaps = 0/58 (0%)

Query  3    TVVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLAVAI  60
             +V  IG L  GL+LH  D      G  T+W +A  G+  GAG++     AT L + +
Sbjct  75   NIVQGIGFLGAGLILHNRDRISGLTGAATVWAVASIGMCCGAGLYLPAAFATALVLLV  132


>gi|299136520|ref|ZP_07029703.1| MgtC/SapB transporter [Acidobacterium sp. MP5ACTX8]
 gi|298601035|gb|EFI57190.1| MgtC/SapB transporter [Acidobacterium sp. MP5ACTX8]
Length=258

 Score = 35.0 bits (79),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 35/64 (55%), Gaps = 1/64 (1%)

Query  4    VVAVIGILECGLVLHMPDNDLWYCGPWTLWVMAGRGVASGAGVWRGDRVATPLA-VAITA  62
            +V  +G L  GL+LH  +  L      T++V+A  G+  GAG++    +AT L  +++ A
Sbjct  83   IVQGVGFLGAGLILHTKNRVLGLTSAATVFVVAAIGMTCGAGLYIEALIATVLVLISLQA  142

Query  63   AGLV  66
             G V
Sbjct  143  VGAV  146



Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 236380426956


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40