BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3033
Length=182
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610170|ref|NP_217549.1| hypothetical protein Rv3033 [Mycoba... 370 4e-101
gi|340628025|ref|YP_004746477.1| hypothetical protein MCAN_30581... 363 4e-99
gi|167970232|ref|ZP_02552509.1| hypothetical protein MtubH3_2027... 337 5e-91
gi|183981684|ref|YP_001849975.1| hypothetical protein MMAR_1670 ... 293 5e-78
gi|118617506|ref|YP_905838.1| hypothetical protein MUL_1906 [Myc... 291 2e-77
gi|240169570|ref|ZP_04748229.1| hypothetical protein MkanA1_0967... 274 5e-72
gi|296171174|ref|ZP_06852622.1| conserved hypothetical protein [... 269 1e-70
gi|254776318|ref|ZP_05217834.1| hypothetical protein MaviaA2_168... 253 6e-66
gi|254821491|ref|ZP_05226492.1| hypothetical protein MintA_16275... 230 6e-59
gi|297563928|ref|YP_003682901.1| hypothetical protein Ndas_5014 ... 124 6e-27
gi|269126486|ref|YP_003299856.1| hypothetical protein Tcur_2252 ... 97.8 6e-19
gi|291451804|ref|ZP_06591194.1| conserved hypothetical protein [... 93.6 1e-17
gi|145223716|ref|YP_001134394.1| hypothetical protein Mflv_3129 ... 78.6 4e-13
gi|120404377|ref|YP_954206.1| hypothetical protein Mvan_3404 [My... 72.8 2e-11
gi|226304384|ref|YP_002764342.1| hypothetical protein RER_08950 ... 72.8 2e-11
gi|229494475|ref|ZP_04388238.1| conserved hypothetical protein [... 70.9 8e-11
gi|213649428|ref|ZP_03379481.1| hypothetical protein SentesTy_20... 65.5 3e-09
gi|68535268|ref|YP_249973.1| hypothetical protein jk0203 [Coryne... 64.7 5e-09
gi|260578523|ref|ZP_05846435.1| conserved hypothetical protein [... 64.7 6e-09
gi|331699119|ref|YP_004335358.1| hypothetical protein Psed_5371 ... 64.3 7e-09
gi|54025746|ref|YP_119988.1| hypothetical protein nfa37760 [Noca... 61.2 6e-08
gi|297156202|gb|ADI05914.1| hypothetical protein SBI_02793 [Stre... 60.8 9e-08
gi|182435214|ref|YP_001822933.1| hypothetical protein SGR_1421 [... 57.4 1e-06
gi|326775852|ref|ZP_08235117.1| hypothetical protein SACT1_1666 ... 57.4 1e-06
gi|320007768|gb|ADW02618.1| hypothetical protein Sfla_1167 [Stre... 56.6 2e-06
gi|291448640|ref|ZP_06588030.1| predicted protein [Streptomyces ... 55.8 3e-06
gi|239991637|ref|ZP_04712301.1| hypothetical protein SrosN1_3031... 55.5 3e-06
gi|169630806|ref|YP_001704455.1| hypothetical protein MAB_3727c ... 55.1 5e-06
gi|311743963|ref|ZP_07717769.1| conserved hypothetical protein [... 53.5 1e-05
gi|333919611|ref|YP_004493192.1| hypothetical protein AS9A_1943 ... 53.5 1e-05
gi|326332034|ref|ZP_08198319.1| hypothetical protein NBCG_03478 ... 52.8 2e-05
gi|296138590|ref|YP_003645833.1| hypothetical protein Tpau_0859 ... 50.4 1e-04
gi|145221641|ref|YP_001132319.1| hypothetical protein Mflv_1048 ... 42.7 0.024
gi|315446622|ref|YP_004079501.1| hypothetical protein Mspyr1_514... 40.4 0.10
gi|118470842|ref|YP_887476.1| hypothetical protein MSMEG_3161 [M... 40.4 0.12
gi|229818866|ref|YP_002880392.1| hypothetical protein Bcav_0366 ... 40.0 0.15
gi|288916578|ref|ZP_06410954.1| hypothetical protein FrEUN1fDRAF... 38.5 0.43
gi|284988819|ref|YP_003407373.1| hypothetical protein Gobs_0196 ... 38.1 0.54
gi|84516696|ref|ZP_01004055.1| hypothetical protein SKA53_08791 ... 36.6 1.4
gi|73984387|ref|XP_533356.2| PREDICTED: similar to Nebulin [Cani... 35.8 2.5
gi|294675387|ref|YP_003576003.1| endo-polygalacturonase [Prevote... 35.8 2.5
gi|258653123|ref|YP_003202279.1| hypothetical protein Namu_2952 ... 35.8 2.5
gi|269794526|ref|YP_003313981.1| hypothetical protein Sked_12050... 35.0 4.1
gi|307565772|ref|ZP_07628241.1| putative phosphoribosylformylgly... 35.0 4.3
gi|336179710|ref|YP_004585085.1| Bifunctional purine biosynthesi... 35.0 5.2
gi|317063430|ref|ZP_07927915.1| D-xylose ABC transporter [Fusoba... 34.3 8.7
gi|288922685|ref|ZP_06416859.1| hypothetical protein FrEUN1fDRAF... 33.9 9.3
gi|302419411|ref|XP_003007536.1| phospholipase D1 [Verticillium ... 33.9 9.5
>gi|15610170|ref|NP_217549.1| hypothetical protein Rv3033 [Mycobacterium tuberculosis H37Rv]
gi|15842597|ref|NP_337634.1| hypothetical protein MT3118 [Mycobacterium tuberculosis CDC1551]
gi|31794211|ref|NP_856704.1| hypothetical protein Mb3059 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=182
Score = 370 bits (951), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 182/182 (100%), Positives = 182/182 (100%), Gaps = 0/182 (0%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES
Sbjct 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK
Sbjct 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH
Sbjct 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
Query 181 PE 182
PE
Sbjct 181 PE 182
>gi|340628025|ref|YP_004746477.1| hypothetical protein MCAN_30581 [Mycobacterium canettii CIPT
140010059]
gi|340006215|emb|CCC45389.1| hypothetical protein MCAN_30581 [Mycobacterium canettii CIPT
140010059]
Length=182
Score = 363 bits (933), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 179/182 (99%), Positives = 180/182 (99%), Gaps = 0/182 (0%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
MAHSIVRTLLASG ATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES
Sbjct 1 MAHSIVRTLLASGTATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
VTCPSDLPAEVGAELNC+MKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK
Sbjct 61 VTCPSDLPAEVGAELNCDMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH
Sbjct 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
Query 181 PE 182
E
Sbjct 181 HE 182
>gi|167970232|ref|ZP_02552509.1| hypothetical protein MtubH3_20278 [Mycobacterium tuberculosis
H37Ra]
Length=208
Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/166 (100%), Positives = 166/166 (100%), Gaps = 0/166 (0%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES
Sbjct 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK
Sbjct 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSV 166
LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSV
Sbjct 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSV 166
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (42%), Positives = 42/70 (60%), Gaps = 0/70 (0%)
Query 106 ETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTS 165
+V K +VA I+ K+ G +P+SVTCP +L GA+L C + +T+ ++V VTS
Sbjct 35 HSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTS 94
Query 166 VDAGDVNFDF 175
VD DV FD
Sbjct 95 VDGSDVKFDM 104
>gi|183981684|ref|YP_001849975.1| hypothetical protein MMAR_1670 [Mycobacterium marinum M]
gi|183175010|gb|ACC40120.1| conserved membrane protein [Mycobacterium marinum M]
Length=181
Score = 293 bits (751), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 143/182 (79%), Positives = 161/182 (89%), Gaps = 1/182 (0%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
MAHSIVRT L SGAA L+A ACS SIGT SHSVSK++VA QI AKMTDA+GNKPES
Sbjct 1 MAHSIVRTFLVSGAAVGLMASAGACSCSIGTG-SHSVSKSDVAEQIKAKMTDASGNKPES 59
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
VTCP DLPA+VGA+LNCEMK+KD T+NVNVTVTSVDG DVKFDMVETVDK++VA+IIS+K
Sbjct 60 VTCPGDLPAKVGAQLNCEMKVKDSTYNVNVTVTSVDGKDVKFDMVETVDKDKVAHIISNK 119
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
L+Q+VG RPDSVTCPDNLKGV GA LRC+L DGSKTYG++V VTS+DAGDV FDFKVDDH
Sbjct 120 LYQKVGQRPDSVTCPDNLKGVVGATLRCQLIDGSKTYGVNVTVTSIDAGDVRFDFKVDDH 179
Query 181 PE 182
PE
Sbjct 180 PE 181
>gi|118617506|ref|YP_905838.1| hypothetical protein MUL_1906 [Mycobacterium ulcerans Agy99]
gi|118569616|gb|ABL04367.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=181
Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/182 (79%), Positives = 160/182 (88%), Gaps = 1/182 (0%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
MAHSIVRT L SGAA L+A ACS SIGT SHSVSK++VA QI AKMTDA+GNKPES
Sbjct 1 MAHSIVRTFLVSGAAVGLMASAGACSCSIGTG-SHSVSKSDVAEQIKAKMTDASGNKPES 59
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
VTCP DLPA+VGA+ NCEMK+KD T+NVNVTVTSVDG DVKFDMVETVDK++VA+IIS+K
Sbjct 60 VTCPGDLPAKVGAQANCEMKVKDSTYNVNVTVTSVDGKDVKFDMVETVDKDKVAHIISNK 119
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
L+Q+VG RPDSVTCPDNLKGV GA LRC+L DGSKTYG++V VTS+DAGDV FDFKVDDH
Sbjct 120 LYQKVGQRPDSVTCPDNLKGVVGATLRCQLIDGSKTYGVNVTVTSIDAGDVRFDFKVDDH 179
Query 181 PE 182
PE
Sbjct 180 PE 181
>gi|240169570|ref|ZP_04748229.1| hypothetical protein MkanA1_09672 [Mycobacterium kansasii ATCC
12478]
Length=181
Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 146/182 (81%), Positives = 161/182 (89%), Gaps = 1/182 (0%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
MA+SIVR LL SGAA L+A ACS SI S SHSVSK+EVA QI AKMTDAAGNKPES
Sbjct 1 MAYSIVRALLISGAALGLMASAGACSCSI-GSSSHSVSKSEVANQIRAKMTDAAGNKPES 59
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
VTCP+DLPA+VGA+LNCEMK+KD T+NVNVTVTSV+G DVKFDMVETVDKNQVA+IIS+K
Sbjct 60 VTCPADLPAKVGAQLNCEMKVKDSTYNVNVTVTSVEGKDVKFDMVETVDKNQVASIISNK 119
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
L Q+VG RPDSVTCPDNLKGVEGA LRC+LTDGS YG++V VTSVDAGDVNFDFKVDDH
Sbjct 120 LTQQVGRRPDSVTCPDNLKGVEGATLRCQLTDGSDKYGVNVTVTSVDAGDVNFDFKVDDH 179
Query 181 PE 182
PE
Sbjct 180 PE 181
>gi|296171174|ref|ZP_06852622.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894310|gb|EFG74065.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=183
Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/182 (74%), Positives = 155/182 (86%), Gaps = 2/182 (1%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
M I RTLL SGAA L+A TACS S+G+SH+ VSK++VA QIT+ MTDAAGNKP+S
Sbjct 1 MTPFIARTLLVSGAAAGLLAGVTACSCSVGSSHT--VSKSDVAGQITSTMTDAAGNKPDS 58
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
V CP+DLPA+VGA+LNCEMK+K++TFNVNVTVTSVDG DVKFDMVETVDK+QVA IIS+K
Sbjct 59 VNCPNDLPAKVGAQLNCEMKVKNQTFNVNVTVTSVDGKDVKFDMVETVDKDQVARIISNK 118
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
L Q+VG RPD+VTCPDNLKGV GA LRC+L DGS YGI+V VT+VDAGDV FDFKVDDH
Sbjct 119 LAQQVGRRPDAVTCPDNLKGVRGATLRCQLVDGSDKYGIAVTVTNVDAGDVKFDFKVDDH 178
Query 181 PE 182
E
Sbjct 179 AE 180
>gi|254776318|ref|ZP_05217834.1| hypothetical protein MaviaA2_16852 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=179
Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/182 (72%), Positives = 147/182 (81%), Gaps = 6/182 (3%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
M + I+RTLL G L A ACS SIG SHS VSK++VA QITAKMTDAAGNKPES
Sbjct 1 MTNFIIRTLLIGG----LTAGVGACSCSIGPSHS--VSKSDVAGQITAKMTDAAGNKPES 54
Query 61 VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDK 120
V CP DLPA+VGA+LNCEMK+K+R FNVNVTVTSV+G+DVKFDMVETVDKNQVA IS +
Sbjct 55 VNCPGDLPAKVGAQLNCEMKVKNRPFNVNVTVTSVNGNDVKFDMVETVDKNQVAGAISSQ 114
Query 121 LFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
L Q+ G +PDSVTCPDNLKGV GA LRC+LTDGS YG+ V VT VDAGDVNF FKVD+
Sbjct 115 LGQQFGRQPDSVTCPDNLKGVAGATLRCQLTDGSDKYGVLVTVTDVDAGDVNFHFKVDEQ 174
Query 181 PE 182
P+
Sbjct 175 PQ 176
>gi|254821491|ref|ZP_05226492.1| hypothetical protein MintA_16275 [Mycobacterium intracellulare
ATCC 13950]
Length=181
Score = 230 bits (587), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 115/179 (65%), Positives = 138/179 (78%), Gaps = 2/179 (1%)
Query 4 SIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTC 63
+++ L S AA LI CS SIG+SH+ VS++EVA QI+AKMTDAAGNKPESV C
Sbjct 2 TVICALPVSCAAAGLITAVAGCSCSIGSSHA--VSRSEVAGQISAKMTDAAGNKPESVNC 59
Query 64 PSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDKLFQ 123
P+DLPA +G ++ CEMK+K+R F VNVTVTSV+G DVKFDMVE V K QVA IS +L Q
Sbjct 60 PNDLPATLGVQVTCEMKVKNRPFGVNVTVTSVEGGDVKFDMVEMVGKEQVAAAISTQLGQ 119
Query 124 RVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDHPE 182
RVG +PDSVTCPDNL+GV GA LRC+LTD + YG+ V VT+V AGDVNF FKVDD P+
Sbjct 120 RVGRKPDSVTCPDNLRGVAGATLRCQLTDHGQKYGVLVTVTNVAAGDVNFHFKVDDRPQ 178
>gi|297563928|ref|YP_003682901.1| hypothetical protein Ndas_5014 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848377|gb|ADH70395.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=216
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/211 (35%), Positives = 104/211 (50%), Gaps = 39/211 (18%)
Query 6 VRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPS 65
V T A GA + L++ T CSF +V +VA + + + + G P+ TCP
Sbjct 9 VITGTALGAVSLLLS--TGCSFEFSIGGPDAVGAEQVAERSSEMLAEEVGQTPDGFTCPE 66
Query 66 DLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVA----------- 114
DLPAEVGAE+ CE+ +T V VT TSVDG DV++D+ VD QVA
Sbjct 67 DLPAEVGAEIRCELTADGQTLGVTVTTTSVDGDDVQWDV--EVDDAQVAEDAAGDGAGED 124
Query 115 ----------------NIISDKLFQR--------VGARPDSVTCPDNLKGVEGAKLRCRL 150
+ ++++ Q+ VG P+ +CP L GA++RC L
Sbjct 125 TGGGAGGDGGTAASDGGVPAEQVAQQSAAQLEAVVGRAPEDFSCPQGLPAEVGAEIRCNL 184
Query 151 TDGSKTYGISVIVTSVDAGDVNFDFKVDDHP 181
DG YG+++ TSVD DV +D +VDD P
Sbjct 185 VDGGMNYGVTITTTSVDGDDVQWDIEVDDQP 215
>gi|269126486|ref|YP_003299856.1| hypothetical protein Tcur_2252 [Thermomonospora curvata DSM 43183]
gi|268311444|gb|ACY97818.1| hypothetical protein Tcur_2252 [Thermomonospora curvata DSM 43183]
Length=189
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/193 (37%), Positives = 101/193 (53%), Gaps = 26/193 (13%)
Query 6 VRTLLASGA-ATALIA-IPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTC 63
+R LLA TAL+A + T C+ + V+ AEV QI+ K+ D G +P SV+C
Sbjct 1 MRKLLAPALLGTALVAGLTTGCTDLL----DKKVTAAEVESQISDKLADQLGGRPRSVSC 56
Query 64 PSDLPAEVGAELNCEMKIKDRTFN-VNVTVTSVDGSDVKFDM----------------VE 106
P+DL EVGA L C++ D T VNVTVT VDG + +D+ V
Sbjct 57 PADLRGEVGATLRCDLVTADGTERIVNVTVTGVDGDRISYDINSPAPRQTTAPAPSGGVP 116
Query 107 TVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRL--TDGSKTYGISVIVT 164
+ + QV +L R+ P SV CP +L+G GA ++C L TDG+ +++ VT
Sbjct 117 LLTQAQVEAEALRQLAPRLDGDPRSVVCPGDLRGEVGATMQCDLHFTDGTW-RAVTITVT 175
Query 165 SVDAGDVNFDFKV 177
SV VNFD ++
Sbjct 176 SVAGTTVNFDIRL 188
>gi|291451804|ref|ZP_06591194.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354753|gb|EFE81655.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=181
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/176 (34%), Positives = 83/176 (48%), Gaps = 26/176 (14%)
Query 32 SHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKDRTFNVNVT 91
S SV K EVA+Q + + G +P+SVTC DL AE GA + CE+ + + T
Sbjct 4 SSGGSVGKDEVAKQAKTALGEQVGQEPDSVTCEDDLKAEKGATVRCELTSDGKKLGLTAT 63
Query 92 VTSV-DG-SDVKFDM------------------------VETVDKNQVANIISDKLFQRV 125
TSV DG + + F + VDK +VA L +
Sbjct 64 TTSVEDGKAQIGFKVDDLPGEGASTTPPEPTGTPDDAAGAPAVDKAEVARQGKAALAAQT 123
Query 126 GARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDHP 181
G +PD++ C ++L GA +RC+L + YG++V SV G V DFKVDD P
Sbjct 124 GRQPDALACKEDLPARAGATVRCQLAADGEQYGVTVTAKSVTGGTVQMDFKVDDAP 179
>gi|145223716|ref|YP_001134394.1| hypothetical protein Mflv_3129 [Mycobacterium gilvum PYR-GCK]
gi|315444044|ref|YP_004076923.1| hypothetical protein Mspyr1_24460 [Mycobacterium sp. Spyr1]
gi|145216202|gb|ABP45606.1| hypothetical protein Mflv_3129 [Mycobacterium gilvum PYR-GCK]
gi|315262347|gb|ADT99088.1| hypothetical protein Mspyr1_24460 [Mycobacterium sp. Spyr1]
Length=243
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/147 (30%), Positives = 77/147 (53%), Gaps = 1/147 (0%)
Query 29 IGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKDRTFNV 88
IG ++SK ++ R + A++ +A + V C S L ++G C++ + T
Sbjct 94 IGYELLPALSKEQLERGV-ARLAEAGVSPSARVVCQSGLLGQMGESAQCDVTLAGVTVRR 152
Query 89 NVTVTSVDGSDVKFDMVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRC 148
VT VDG + FD++ + K +V + D+L + +G+RPDS TC +L+G G + C
Sbjct 153 TAEVTGVDGLMMTFDLIPILTKAEVEESLLDELARHIGSRPDSATCTGDLEGRPGNTVDC 212
Query 149 RLTDGSKTYGISVIVTSVDAGDVNFDF 175
+ DG+ + VTSVD +++ +
Sbjct 213 AVVDGADRAAFILTVTSVDGTKIDYSY 239
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/172 (29%), Positives = 79/172 (46%), Gaps = 6/172 (3%)
Query 6 VRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPS 65
+R +L A LIA+ C + +V+ A++ ITA+ +A G P+SVTC
Sbjct 1 MRKVLGRCAVLVLIAVTAGCGEQV-ADEVPAVATADLQADITARFVEA-GATPQSVTCRD 58
Query 66 DLPAEVGAELNCEMKI-KDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDKLFQR 124
L E+G CE+ + +F VTVT V+G + ++++ + K Q+ ++
Sbjct 59 PLVGEIGRTARCEVVLGPTNSFEPIVTVTDVEGDRIGYELLPALSKEQLERGVAR--LAE 116
Query 125 VGARPDS-VTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDF 175
G P + V C L G G +C +T T + VT VD + FD
Sbjct 117 AGVSPSARVVCQSGLLGQMGESAQCDVTLAGVTVRRTAEVTGVDGLMMTFDL 168
>gi|120404377|ref|YP_954206.1| hypothetical protein Mvan_3404 [Mycobacterium vanbaalenii PYR-1]
gi|119957195|gb|ABM14200.1| hypothetical protein Mvan_3404 [Mycobacterium vanbaalenii PYR-1]
Length=249
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/136 (31%), Positives = 69/136 (51%), Gaps = 1/136 (0%)
Query 41 EVARQITAKMTDAAGNKPES-VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSD 99
E + A++ G P+S VTC + L G C++ T VT VDG
Sbjct 110 EQLERAVARLVAEDGGPPDSTVTCQAGLLGRPGEVARCDVTAGGVTLRRTAEVTGVDGLM 169
Query 100 VKFDMVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGI 159
+ FD+V + K +V + D+L + +G RPDS TC +L+G G + C +TDG ++
Sbjct 170 MNFDLVPMLTKAEVERSLLDELARHLGRRPDSATCSGDLEGRPGNSVDCAVTDGPESAAF 229
Query 160 SVIVTSVDAGDVNFDF 175
+ VT+VD +++ +
Sbjct 230 ILTVTAVDGDRIDYSY 245
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/142 (36%), Positives = 73/142 (52%), Gaps = 4/142 (2%)
Query 36 SVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKD-RTFNVNVTVTS 94
+VS A++ R I + +A G +P+SVTC L EVG C++ + +F VTVT
Sbjct 35 AVSTADLQRDIAERFAEA-GARPQSVTCKDPLVGEVGQTARCDVTMSPTNSFEPIVTVTG 93
Query 95 VDGSDVKFDMVETVDKNQVANIISDKLFQRVGARPDS-VTCPDNLKGVEGAKLRCRLTDG 153
VDG V ++++ + Q+ ++ +L G PDS VTC L G G RC +T G
Sbjct 94 VDGETVDYELLPALSVEQLERAVA-RLVAEDGGPPDSTVTCQAGLLGRPGEVARCDVTAG 152
Query 154 SKTYGISVIVTSVDAGDVNFDF 175
T + VT VD +NFD
Sbjct 153 GVTLRRTAEVTGVDGLMMNFDL 174
>gi|226304384|ref|YP_002764342.1| hypothetical protein RER_08950 [Rhodococcus erythropolis PR4]
gi|226183499|dbj|BAH31603.1| hypothetical protein RER_08950 [Rhodococcus erythropolis PR4]
Length=105
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (48%), Positives = 47/74 (64%), Gaps = 0/74 (0%)
Query 108 VDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVD 167
VDK++VA+ IS +L +++G PD VTCP+NL GA + C LT+ Y ++ VTSVD
Sbjct 30 VDKSEVASQISTQLAEKIGEPPDDVTCPENLDAEVGASITCILTEQGTEYDVTATVTSVD 89
Query 168 AGDVNFDFKVDDHP 181
NFD KV D P
Sbjct 90 GESANFDIKVADVP 103
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 56/96 (59%), Gaps = 9/96 (9%)
Query 9 LLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLP 68
LL++ AT ACS S+GT V K+EVA QI+ ++ + G P+ VTCP +L
Sbjct 11 LLSAALATG------ACSASVGTPQ---VDKSEVASQISTQLAEKIGEPPDDVTCPENLD 61
Query 69 AEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDM 104
AEVGA + C + + ++V TVTSVDG FD+
Sbjct 62 AEVGASITCILTEQGTEYDVTATVTSVDGESANFDI 97
>gi|229494475|ref|ZP_04388238.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229318837|gb|EEN84695.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=76
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/74 (46%), Positives = 47/74 (64%), Gaps = 0/74 (0%)
Query 108 VDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVD 167
+DK++VA+ IS +L +++G PD VTCP+NL GA + C LT+ Y ++ VTSVD
Sbjct 1 MDKSEVASQISTQLAEKIGEPPDDVTCPENLDAEVGASITCILTEQGTEYDVTATVTSVD 60
Query 168 AGDVNFDFKVDDHP 181
NFD KV D P
Sbjct 61 GESANFDIKVADVP 74
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (44%), Positives = 42/66 (64%), Gaps = 0/66 (0%)
Query 39 KAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGS 98
K+EVA QI+ ++ + G P+ VTCP +L AEVGA + C + + ++V TVTSVDG
Sbjct 3 KSEVASQISTQLAEKIGEPPDDVTCPENLDAEVGASITCILTEQGTEYDVTATVTSVDGE 62
Query 99 DVKFDM 104
FD+
Sbjct 63 SANFDI 68
>gi|213649428|ref|ZP_03379481.1| hypothetical protein SentesTy_20327 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length=33
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
Query 89 NVTVTSVDGSDVKFDMVETVDKNQVANIISDKL 121
NVTVTSVDGSDVKFDMVETVDKNQVANIISDKL
Sbjct 1 NVTVTSVDGSDVKFDMVETVDKNQVANIISDKL 33
>gi|68535268|ref|YP_249973.1| hypothetical protein jk0203 [Corynebacterium jeikeium K411]
gi|68262867|emb|CAI36355.1| hypothetical protein jk0203 [Corynebacterium jeikeium K411]
Length=116
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/75 (39%), Positives = 43/75 (58%), Gaps = 0/75 (0%)
Query 108 VDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVD 167
V + V ISD L + +G +P+ + CP LK EGAK+ C+L D +TY + V VD
Sbjct 42 VAQEDVEKGISDSLEKEIGRKPERIECPSGLKAEEGAKIECKLHDSGETYSVDVTADKVD 101
Query 168 AGDVNFDFKVDDHPE 182
DV+++ +V D E
Sbjct 102 GNDVHYNVEVADQAE 116
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (36%), Positives = 52/90 (58%), Gaps = 5/90 (5%)
Query 23 TACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIK 82
+ACS G V++ +V + I+ + G KPE + CPS L AE GA++ C++
Sbjct 32 SACSLLGGGE----VAQEDVEKGISDSLEKEIGRKPERIECPSGLKAEEGAKIECKLHDS 87
Query 83 DRTFNVNVTVTSVDGSDVKFDMVETVDKNQ 112
T++V+VT VDG+DV ++ VE D+ +
Sbjct 88 GETYSVDVTADKVDGNDVHYN-VEVADQAE 116
>gi|260578523|ref|ZP_05846435.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
gi|258603362|gb|EEW16627.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
Length=116
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (39%), Positives = 43/75 (58%), Gaps = 0/75 (0%)
Query 108 VDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVD 167
V + V ISD L + +G +P+ + CP LK EGAK+ C+L D +TY + V VD
Sbjct 42 VAQEDVEKGISDSLEKEIGRKPERIECPSGLKAEEGAKIECKLHDSGETYSVDVTADKVD 101
Query 168 AGDVNFDFKVDDHPE 182
DV+++ +V D E
Sbjct 102 GNDVHYNVEVADQAE 116
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (36%), Positives = 52/90 (58%), Gaps = 5/90 (5%)
Query 23 TACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIK 82
+ACS G V++ +V + I+ + G KPE + CPS L AE GA++ C++
Sbjct 32 SACSLLGGGE----VAQEDVEKGISDSLEKEIGRKPERIECPSGLKAEEGAKIECKLHDS 87
Query 83 DRTFNVNVTVTSVDGSDVKFDMVETVDKNQ 112
T++V+VT VDG+DV ++ VE D+ +
Sbjct 88 GETYSVDVTADKVDGNDVHYN-VEVADQAE 116
>gi|331699119|ref|YP_004335358.1| hypothetical protein Psed_5371 [Pseudonocardia dioxanivorans
CB1190]
gi|326953808|gb|AEA27505.1| hypothetical protein Psed_5371 [Pseudonocardia dioxanivorans
CB1190]
Length=247
Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/141 (30%), Positives = 75/141 (54%), Gaps = 8/141 (5%)
Query 40 AEVARQITAKMTDAAGNKPES--VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDG 97
A VA+ +TA D A E+ + CPS+LPA+ GA + C + VTVT+V+
Sbjct 106 AVVAKSVTA---DLAKQNVEAKDLQCPSELPAQQGASIECAFTADGQPVGAKVTVTAVED 162
Query 98 SDVKFD---MVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGS 154
++V +D + + V K+ + +++++ ++ G S C +L+ GA+ C +T
Sbjct 163 ANVSYDVELVAKPVSKDLLQQTLTEQIGRQAGVTISSTACAGDLQPQVGAQTSCTVTAPG 222
Query 155 KTYGISVIVTSVDAGDVNFDF 175
+ V VT+V++G VNF +
Sbjct 223 EQVEFDVAVTAVNSGLVNFAW 243
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/159 (31%), Positives = 80/159 (51%), Gaps = 24/159 (15%)
Query 36 SVSKAEVARQITAKMTD----AAGNKPESVTCPSDLPAEVGAELNCEMKIK-DRTFNVNV 90
SV+K ++A+ +TAK+ + AAG +TCP +L E GA + C+ + +V V
Sbjct 28 SVAKEDLAQSVTAKLAEQKVEAAG-----MTCPENLKGETGASVTCQYTTAAGQPVDVVV 82
Query 91 TVTSVDGSDVKFD--------MVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVE 142
+VTSVDGS V + + V K+ + +D Q V A+ + CP L +
Sbjct 83 SVTSVDGSTVNYTAQPKARPLLPAVVAKS----VTADLAKQNVEAK--DLQCPSELPAQQ 136
Query 143 GAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFKVDDHP 181
GA + C T + G V VT+V+ +V++D ++ P
Sbjct 137 GASIECAFTADGQPVGAKVTVTAVEDANVSYDVELVAKP 175
>gi|54025746|ref|YP_119988.1| hypothetical protein nfa37760 [Nocardia farcinica IFM 10152]
gi|54017254|dbj|BAD58624.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=119
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 0/62 (0%)
Query 117 ISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFDFK 176
+ + L Q+VG PD++ CP +L+G G +RC LT G T G++V VTSV VN+D +
Sbjct 56 VKETLTQQVGQEPDTIDCPGDLEGEVGNTMRCTLTAGGDTLGLTVTVTSVQDETVNYDVQ 115
Query 177 VD 178
VD
Sbjct 116 VD 117
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (34%), Positives = 45/81 (56%), Gaps = 1/81 (1%)
Query 24 ACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKD 83
C+ IG + + SV++A++ R + +T G +P+++ CP DL EVG + C +
Sbjct 35 GCAVQIG-NDTPSVAEADLERSVKETLTQQVGQEPDTIDCPGDLEGEVGNTMRCTLTAGG 93
Query 84 RTFNVNVTVTSVDGSDVKFDM 104
T + VTVTSV V +D+
Sbjct 94 DTLGLTVTVTSVQDETVNYDV 114
>gi|297156202|gb|ADI05914.1| hypothetical protein SBI_02793 [Streptomyces bingchenggensis
BCW-1]
Length=117
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 46/73 (64%), Gaps = 3/73 (4%)
Query 111 NQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLT--DGSKTYGISVIVTSVDA 168
+++A +++KL R G ++TCP++L+G RC+LT DGS T G++V VT VD
Sbjct 41 DKLATTVAEKLAARTGQAKPNITCPEDLEGKVDTTTRCKLTADDGS-TLGVTVTVTGVDG 99
Query 169 GDVNFDFKVDDHP 181
+NFD K D+ P
Sbjct 100 NKINFDVKADNTP 112
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (33%), Positives = 50/103 (49%), Gaps = 5/103 (4%)
Query 4 SIVRTLLASGAATALIAIPTACSFSIGTSHSH-SVSKAEVARQITAKMTDAAGNKPESVT 62
S +LL + AA AL+ CS + S +S ++A + K+ G ++T
Sbjct 7 SATTSLLTAVAAGALLV---GCSAEVKVEKSTPKLSSDKLATTVAEKLAARTGQAKPNIT 63
Query 63 CPSDLPAEVGAELNCEMKIKD-RTFNVNVTVTSVDGSDVKFDM 104
CP DL +V C++ D T V VTVT VDG+ + FD+
Sbjct 64 CPEDLEGKVDTTTRCKLTADDGSTLGVTVTVTGVDGNKINFDV 106
>gi|182435214|ref|YP_001822933.1| hypothetical protein SGR_1421 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178463730|dbj|BAG18250.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length=132
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (37%), Positives = 47/85 (56%), Gaps = 7/85 (8%)
Query 95 VDGSDVKFDMVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDG- 153
V GS+ K K++++ +++KL + G VTCP++L G G + RC LT G
Sbjct 46 VGGSEAKLS------KDKLSATVAEKLAETTGQPEPDVTCPEDLAGKVGTETRCTLTAGD 99
Query 154 SKTYGISVIVTSVDAGDVNFDFKVD 178
T G++ VTSVD +NFD + D
Sbjct 100 GSTLGVTATVTSVDGDKINFDIEAD 124
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (37%), Positives = 43/82 (53%), Gaps = 2/82 (2%)
Query 25 CSFSIGTSHSHS-VSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKD 83
CS S+ S + +SK +++ + K+ + G VTCP DL +VG E C + D
Sbjct 40 CSASVNVGGSEAKLSKDKLSATVAEKLAETTGQPEPDVTCPEDLAGKVGTETRCTLTAGD 99
Query 84 -RTFNVNVTVTSVDGSDVKFDM 104
T V TVTSVDG + FD+
Sbjct 100 GSTLGVTATVTSVDGDKINFDI 121
>gi|326775852|ref|ZP_08235117.1| hypothetical protein SACT1_1666 [Streptomyces cf. griseus XylebKG-1]
gi|326656185|gb|EGE41031.1| hypothetical protein SACT1_1666 [Streptomyces griseus XylebKG-1]
Length=117
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (37%), Positives = 47/85 (56%), Gaps = 7/85 (8%)
Query 95 VDGSDVKFDMVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDG- 153
V GS+ K K++++ +++KL + G VTCP++L G G + RC LT G
Sbjct 31 VGGSEAKLS------KDKLSATVAEKLAETTGQPEPDVTCPEDLAGKVGTETRCTLTAGD 84
Query 154 SKTYGISVIVTSVDAGDVNFDFKVD 178
T G++ VTSVD +NFD + D
Sbjct 85 GSTLGVTATVTSVDGDKINFDIEAD 109
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (37%), Positives = 43/82 (53%), Gaps = 2/82 (2%)
Query 25 CSFSIGTSHSHS-VSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKD 83
CS S+ S + +SK +++ + K+ + G VTCP DL +VG E C + D
Sbjct 25 CSASVNVGGSEAKLSKDKLSATVAEKLAETTGQPEPDVTCPEDLAGKVGTETRCTLTAGD 84
Query 84 -RTFNVNVTVTSVDGSDVKFDM 104
T V TVTSVDG + FD+
Sbjct 85 GSTLGVTATVTSVDGDKINFDI 106
>gi|320007768|gb|ADW02618.1| hypothetical protein Sfla_1167 [Streptomyces flavogriseus ATCC
33331]
Length=119
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (43%), Positives = 43/71 (61%), Gaps = 3/71 (4%)
Query 111 NQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLT--DGSKTYGISVIVTSVDA 168
+++A +S+KL + G +TCP++L G G RC LT DGS T G++V VTSVD
Sbjct 43 DELAATVSEKLARTTGQPEPDITCPEDLAGKVGTTTRCELTADDGS-TLGVTVTVTSVDG 101
Query 169 GDVNFDFKVDD 179
+NF K D+
Sbjct 102 ERINFGIKADE 112
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/106 (34%), Positives = 49/106 (47%), Gaps = 2/106 (1%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSH-SVSKAEVARQITAKMTDAAGNKPE 59
+ S T + S A + T CS S+ S +S E+A ++ K+ G
Sbjct 3 LPRSTAATWILSAVAVTAGVLLTGCSASVSVGKSDPKLSADELAATVSEKLARTTGQPEP 62
Query 60 SVTCPSDLPAEVGAELNCEMKIKD-RTFNVNVTVTSVDGSDVKFDM 104
+TCP DL +VG CE+ D T V VTVTSVDG + F +
Sbjct 63 DITCPEDLAGKVGTTTRCELTADDGSTLGVTVTVTSVDGERINFGI 108
>gi|291448640|ref|ZP_06588030.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291351587|gb|EFE78491.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=117
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (44%), Positives = 42/71 (60%), Gaps = 3/71 (4%)
Query 111 NQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLT--DGSKTYGISVIVTSVDA 168
+++A +S+KL +TCP++L G G RC LT DGS T G+SV VTSV+
Sbjct 41 DKLATTVSEKLAATTNQPEPDITCPEDLAGKVGTTTRCTLTAKDGS-TLGVSVKVTSVEG 99
Query 169 GDVNFDFKVDD 179
+NFD K DD
Sbjct 100 DKINFDIKADD 110
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/106 (34%), Positives = 55/106 (52%), Gaps = 4/106 (3%)
Query 1 MAHSIVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES 60
+A S T S AT + + + S +IG S + ++A ++ K+ A N+PE
Sbjct 3 IARSTAVTWSLSAVATGALLVGCSGSVTIGNSEPK-LPADKLATTVSEKLA-ATTNQPEP 60
Query 61 -VTCPSDLPAEVGAELNCEMKIKD-RTFNVNVTVTSVDGSDVKFDM 104
+TCP DL +VG C + KD T V+V VTSV+G + FD+
Sbjct 61 DITCPEDLAGKVGTTTRCTLTAKDGSTLGVSVKVTSVEGDKINFDI 106
>gi|239991637|ref|ZP_04712301.1| hypothetical protein SrosN1_30317 [Streptomyces roseosporus NRRL
11379]
Length=102
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (44%), Positives = 42/71 (60%), Gaps = 3/71 (4%)
Query 111 NQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLT--DGSKTYGISVIVTSVDA 168
+++A +S+KL +TCP++L G G RC LT DGS T G+SV VTSV+
Sbjct 26 DKLATTVSEKLAATTNQPEPDITCPEDLAGKVGTTTRCTLTAKDGS-TLGVSVKVTSVEG 84
Query 169 GDVNFDFKVDD 179
+NFD K DD
Sbjct 85 DKINFDIKADD 95
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/92 (35%), Positives = 50/92 (55%), Gaps = 4/92 (4%)
Query 15 ATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPES-VTCPSDLPAEVGA 73
AT + + + S +IG S + ++A ++ K+ A N+PE +TCP DL +VG
Sbjct 2 ATGALLVGCSGSVTIGNSEPK-LPADKLATTVSEKLA-ATTNQPEPDITCPEDLAGKVGT 59
Query 74 ELNCEMKIKD-RTFNVNVTVTSVDGSDVKFDM 104
C + KD T V+V VTSV+G + FD+
Sbjct 60 TTRCTLTAKDGSTLGVSVKVTSVEGDKINFDI 91
>gi|169630806|ref|YP_001704455.1| hypothetical protein MAB_3727c [Mycobacterium abscessus ATCC
19977]
gi|169242773|emb|CAM63801.1| Hypothetical protein MAB_3727c [Mycobacterium abscessus]
Length=109
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (37%), Positives = 43/73 (59%), Gaps = 1/73 (1%)
Query 110 KNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDG-SKTYGISVIVTSVDA 168
K ++ + D + ++ G SV+C LKG +GA RC + DG KT G++V T V+
Sbjct 32 KAKLEAGLKDAITEKTGVTLTSVSCDGPLKGEKGATQRCAVIDGEGKTIGVTVTATGVEG 91
Query 169 GDVNFDFKVDDHP 181
++F++KVDD P
Sbjct 92 TKISFNWKVDDQP 104
>gi|311743963|ref|ZP_07717769.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
gi|311313093|gb|EFQ83004.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length=202
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/168 (27%), Positives = 71/168 (43%), Gaps = 11/168 (6%)
Query 24 ACSFSIGTS--HSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKI 81
ACS ++ S S +S + + ++ ++ + P SV CP L AEVGA CEM
Sbjct 35 ACSGTVDVSLGGSDGISGPALEQDLSDRVVELTDLAPASVDCPDGLTAEVGATTTCEMVH 94
Query 82 KDRTFNVNVTVTSVDGSDVKFDMVETVDKNQ-------VANIISDKLFQRVGARPDSVTC 134
++V TSV + D V+ VA+ I+D G VTC
Sbjct 95 GGVRATLDVEATSVAEDEATLDFSWQVEPGSQSLLTEVVADTIADAFAAETGLVLTGVTC 154
Query 135 P-DNLKGVEGAKLRCRL-TDGSKTYGISVIVTSVDAGDVNFDFKVDDH 180
P L G G + C T G ++ + + V + V+F +++ D
Sbjct 155 PASELDGTPGTVMTCEAETSGGRSGPVELQVRGAEGMRVDFSWRLADR 202
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/83 (27%), Positives = 32/83 (39%), Gaps = 0/83 (0%)
Query 99 DVKFDMVETVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYG 158
DV + + + +SD++ + P SV CPD L GA C + G
Sbjct 41 DVSLGGSDGISGPALEQDLSDRVVELTDLAPASVDCPDGLTAEVGATTTCEMVHGGVRAT 100
Query 159 ISVIVTSVDAGDVNFDFKVDDHP 181
+ V TSV + DF P
Sbjct 101 LDVEATSVAEDEATLDFSWQVEP 123
>gi|333919611|ref|YP_004493192.1| hypothetical protein AS9A_1943 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481832|gb|AEF40392.1| hypothetical protein AS9A_1943 [Amycolicicoccus subflavus DQS3-9A1]
Length=167
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (31%), Positives = 58/123 (48%), Gaps = 15/123 (12%)
Query 34 SHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCE-MKIKDRTFNVNVTV 92
S SVS +++ +I+A + + G P S+ CP L AEVGA ++C + D + V
Sbjct 22 SSSVSTSDLEAEISAGIEEQTGEAPASLECPDSLDAEVGATVSCTFVDSLDTEYRVEARA 81
Query 93 TSVDGSDVKFDMVETVDKNQVANIISD-------KLFQRVGARPDSVTCPDNLKGVEGAK 145
VDG+DV F+ +VA I++ L + G V+C L+ A
Sbjct 82 AEVDGNDVDFEW-------EVAEIVTYGAADLELDLSRITGFDATEVSCESELQNTADAS 134
Query 146 LRC 148
+RC
Sbjct 135 VRC 137
>gi|326332034|ref|ZP_08198319.1| hypothetical protein NBCG_03478 [Nocardioidaceae bacterium Broad-1]
gi|325950172|gb|EGD42227.1| hypothetical protein NBCG_03478 [Nocardioidaceae bacterium Broad-1]
Length=108
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 0/100 (0%)
Query 5 IVRTLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCP 64
+ RT SGA T + + + S V + V R T ++T+A G PE + CP
Sbjct 1 MTRTRAFSGAMTGAALLALPLALTACGSGKDYVQEKTVERIATEQLTNAIGVTPEGLDCP 60
Query 65 SDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDM 104
DL +VG E+ C + + ++ +TV VDG V F +
Sbjct 61 GDLEGKVGTEMTCVLTSEGEKYDAIITVDDVDGGRVHFKI 100
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (33%), Positives = 39/74 (53%), Gaps = 2/74 (2%)
Query 108 VDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVD 167
V + V I +++L +G P+ + CP +L+G G ++ C LT + Y + V VD
Sbjct 33 VQEKTVERIATEQLTNAIGVTPEGLDCPGDLEGKVGTEMTCVLTSEGEKYDAIITVDDVD 92
Query 168 AGDVNFDFKVDDHP 181
G V+ FK+D P
Sbjct 93 GGRVH--FKIDVPP 104
>gi|296138590|ref|YP_003645833.1| hypothetical protein Tpau_0859 [Tsukamurella paurometabola DSM
20162]
gi|296026724|gb|ADG77494.1| hypothetical protein Tpau_0859 [Tsukamurella paurometabola DSM
20162]
Length=174
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (31%), Positives = 56/123 (46%), Gaps = 10/123 (8%)
Query 63 CPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKN-QVANIISDKL 121
C L AEVG+ +C + + F V + VT VDG +V++D V VD++ Q ++
Sbjct 52 CDGGLKAEVGSAQHCTLTSEGEKFTVKLRVTGVDGDNVRWDSV--VDRDPQAGRRVTPAQ 109
Query 122 FQR-----VGARP--DSVTCPDNLKGVEGAKLRCRLTDGSKTYGISVIVTSVDAGDVNFD 174
+R + R D+V C L GA C T T + +VTSVD V +
Sbjct 110 LERHTKHVLAQRGPVDTVQCAGGLPATVGAAQDCTATARGATQLVRTVVTSVDPARVQWS 169
Query 175 FKV 177
V
Sbjct 170 VTV 172
>gi|145221641|ref|YP_001132319.1| hypothetical protein Mflv_1048 [Mycobacterium gilvum PYR-GCK]
gi|145214127|gb|ABP43531.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=169
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/155 (32%), Positives = 78/155 (51%), Gaps = 18/155 (11%)
Query 5 IVRTLLAS-GAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVT- 62
+V+TL S GAA AL +ACSFSIG + ++ IT ++ ++ + SV+
Sbjct 1 MVKTLAVSCGAALAL----SACSFSIG-----GLDYDKLESGITEQLNNSYSSLGLSVSS 51
Query 63 --CPSDLPA-EVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETV-DKNQVANIIS 118
CP P + G L C ++ +T V+ TVT D +V F ++T+ D VA+ ++
Sbjct 52 VECPETSPGPKKGESLECSAQVGGQTVRVDATVTD-DDYNVNFKTIDTLYDLPTVADTLT 110
Query 119 DKLFQRVGARPDSVTCPDNLKGVE-GAKLRCRLTD 152
+ + ++VG +V C LK VE G C D
Sbjct 111 ESVSEQVGFDV-TVDCGSGLKAVEVGTTFDCTAAD 144
>gi|315446622|ref|YP_004079501.1| hypothetical protein Mspyr1_51400 [Mycobacterium sp. Spyr1]
gi|315264925|gb|ADU01667.1| hypothetical protein Mspyr1_51400 [Mycobacterium sp. Spyr1]
Length=169
Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/155 (31%), Positives = 77/155 (50%), Gaps = 18/155 (11%)
Query 5 IVRTLLAS-GAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVT- 62
+V+TL S GAA AL +ACSFSIG + ++ IT ++ ++ + SV+
Sbjct 1 MVKTLAVSCGAALAL----SACSFSIG-----GLDYDKLESGITEQLNNSYSSLGLSVSS 51
Query 63 --CPSDLPA-EVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETV-DKNQVANIIS 118
CP P + G L C ++ +T V+ TVT D +V F ++ + D VA+ ++
Sbjct 52 VECPETSPGPKKGESLECSAQVGGQTVRVDATVTD-DDYNVNFKTIDKLYDLPTVADTLT 110
Query 119 DKLFQRVGARPDSVTCPDNLKGVE-GAKLRCRLTD 152
+ + ++VG +V C LK VE G C D
Sbjct 111 ESVSEQVGFDV-TVDCGSGLKAVEVGTTFDCTAAD 144
>gi|118470842|ref|YP_887476.1| hypothetical protein MSMEG_3161 [Mycobacterium smegmatis str.
MC2 155]
gi|118172129|gb|ABK73025.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=116
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (35%), Positives = 41/81 (51%), Gaps = 7/81 (8%)
Query 107 TVDKNQVANIISDKLFQRVGARPDSVTCPDNLKGVEGAKLRCRLT--DGSKTYGISVIVT 164
TV K ++ + +KL + SV C D + G GA RC LT DG++ G++ V
Sbjct 35 TVAKAKLQTLAKEKLEAAAKRKAKSVICEDGIVGEVGATQRCVLTAKDGTR-IGVTARVD 93
Query 165 SVDA----GDVNFDFKVDDHP 181
++ V+ DFKVDD P
Sbjct 94 GIEGRGADARVSIDFKVDDKP 114
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (45%), Gaps = 3/90 (3%)
Query 9 LLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLP 68
L+ +G AL+ AC +V+KA++ K+ AA K +SV C +
Sbjct 10 LVVAGTVAALLL--GACGGEPAGGSQPTVAKAKLQTLAKEKLEAAAKRKAKSVICEDGIV 67
Query 69 AEVGAELNCEMKIKDRT-FNVNVTVTSVDG 97
EVGA C + KD T V V ++G
Sbjct 68 GEVGATQRCVLTAKDGTRIGVTARVDGIEG 97
>gi|229818866|ref|YP_002880392.1| hypothetical protein Bcav_0366 [Beutenbergia cavernae DSM 12333]
gi|229564779|gb|ACQ78630.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
Length=107
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (33%), Positives = 42/79 (54%), Gaps = 4/79 (5%)
Query 107 TVDKNQVANIISDKLFQRVGARPDSVTCPD-NLKGVEGAKLRCRLTD--GSKTYGISVIV 163
TV + VA++ D L ++VG RP+ + C D + + ++ C LTD TY +V V
Sbjct 29 TVSPDTVADLAEDALEEQVGERPE-IDCGDEQIDLLNDVEVACELTDPASGNTYDATVTV 87
Query 164 TSVDAGDVNFDFKVDDHPE 182
+ VD D + +V D P+
Sbjct 88 SDVDGTDFRVNVQVADSPQ 106
>gi|288916578|ref|ZP_06410954.1| hypothetical protein FrEUN1fDRAFT_0647 [Frankia sp. EUN1f]
gi|288352009|gb|EFC86210.1| hypothetical protein FrEUN1fDRAFT_0647 [Frankia sp. EUN1f]
Length=118
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/79 (35%), Positives = 36/79 (46%), Gaps = 5/79 (6%)
Query 26 SFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMK--IKD 83
S S+G V+ +V ++I AK +V CP L AE GA L C +
Sbjct 33 SVSLG---GREVASEDVEQEIAAKFGSQFDRTDLAVDCPGALRAETGATLQCTLTDPTDS 89
Query 84 RTFNVNVTVTSVDGSDVKF 102
++ VNVTV VDG F
Sbjct 90 TSYPVNVTVDGVDGDTASF 108
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/51 (40%), Positives = 29/51 (57%), Gaps = 2/51 (3%)
Query 131 SVTCPDNLKGVEGAKLRCRLTD--GSKTYGISVIVTSVDAGDVNFDFKVDD 179
+V CP L+ GA L+C LTD S +Y ++V V VD +F F++ D
Sbjct 64 AVDCPGALRAETGATLQCTLTDPTDSTSYPVNVTVDGVDGDTASFSFELGD 114
>gi|284988819|ref|YP_003407373.1| hypothetical protein Gobs_0196 [Geodermatophilus obscurus DSM
43160]
gi|284062064|gb|ADB73002.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
43160]
Length=91
Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/94 (38%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query 14 AATALIAIP-TACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVG 72
AA ++AI TACS SIG + +VA + ++ AAG V+CP DL AEV
Sbjct 3 AAVPVLAIGLTACSSSIGQDELET----QVAGTLESRFGVAAG-----VSCPGDLDAEVD 53
Query 73 AELNCEMKIKDRTFNV--NVTVTSVDGSDVKFDM 104
A C D V +TVTSV+ +FD+
Sbjct 54 ATTECTATEIDTGEEVVLRITVTSVEDGAAEFDI 87
>gi|84516696|ref|ZP_01004055.1| hypothetical protein SKA53_08791 [Loktanella vestfoldensis SKA53]
gi|84509732|gb|EAQ06190.1| hypothetical protein SKA53_08791 [Loktanella vestfoldensis SKA53]
Length=279
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (28%), Positives = 40/85 (48%), Gaps = 3/85 (3%)
Query 45 QITAKMTDAAGNKPESVTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDM 104
QI + D +PE V P+D A++ A +CE+ I F+ +T +V +D+ F
Sbjct 66 QIGNRGADVWDGEPEGVYIPTDTTAQITALTDCEVFIAGAQFSETLTPFAVRAADIDFVQ 125
Query 105 V---ETVDKNQVANIISDKLFQRVG 126
+T ++ +I+ RVG
Sbjct 126 YGSDDTKTHRKIKHILGAAHHDRVG 150
>gi|73984387|ref|XP_533356.2| PREDICTED: similar to Nebulin [Canis familiaris]
Length=5625
Score = 35.8 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 23/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query 45 QITAKMTDAAGNKPES-VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFD 103
QI+ K+ A NK ++ +T PSD P + A +N ++I D+ + + T G D K D
Sbjct 2756 QISEKLYQDAWNKDKTNITIPSDTPVMLQAHINA-LQISDKLYQKDWNETKQKGYDFKAD 2814
Query 104 MVETVDKNQVANIISD 119
+E +I S+
Sbjct 2815 AIEIKQAKASRDIASE 2830
>gi|294675387|ref|YP_003576003.1| endo-polygalacturonase [Prevotella ruminicola 23]
gi|294472104|gb|ADE81493.1| putative endo-polygalacturonase [Prevotella ruminicola 23]
Length=480
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (35%), Positives = 31/55 (57%), Gaps = 1/55 (1%)
Query 78 EMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDKLFQRVGARPDSV 132
++K++D TF + + SVDG+ + +VE VD N + +L QR G R S+
Sbjct 291 DIKVRD-TFRSAIAIESVDGAQIDSILVERVDARNTGNPVFMRLGQRAGQRKGSL 344
>gi|258653123|ref|YP_003202279.1| hypothetical protein Namu_2952 [Nakamurella multipartita DSM
44233]
gi|258556348|gb|ACV79290.1| hypothetical protein Namu_2952 [Nakamurella multipartita DSM
44233]
Length=334
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/65 (31%), Positives = 32/65 (50%), Gaps = 11/65 (16%)
Query 41 EVARQITAKMTDAAGNKPES--------VTCPSDLPAEVGAELNCEMKIKDRTFNVNVTV 92
+VA+ +T+ +T GN P VTCPS P + G C++K+ ++ V V V
Sbjct 265 QVAQGVTSVLT---GNPPSGYGLTGVTDVTCPSGQPVQAGTSFQCDLKVDGKSTKVTVNV 321
Query 93 TSVDG 97
+G
Sbjct 322 QDNNG 326
>gi|269794526|ref|YP_003313981.1| hypothetical protein Sked_12050 [Sanguibacter keddieii DSM 10542]
gi|269096711|gb|ACZ21147.1| hypothetical protein Sked_12050 [Sanguibacter keddieii DSM 10542]
Length=103
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/80 (34%), Positives = 42/80 (53%), Gaps = 6/80 (7%)
Query 107 TVDKNQVANIISDKLFQRVGARPDSVTCPD-NLKGVEGAKLRCRLTD---GSKTYGISVI 162
TV +VA D L + VG+RP+ V C D + ++G + C LTD GS+ Y +V
Sbjct 25 TVSPGKVATEAEDALEKVVGSRPE-VDCGDEQVDLLDGTVVACELTDPTTGSR-YDTAVT 82
Query 163 VTSVDAGDVNFDFKVDDHPE 182
++ VD + D V + P+
Sbjct 83 LSEVDGTSFHIDVDVAEEPK 102
>gi|307565772|ref|ZP_07628241.1| putative phosphoribosylformylglycinamidine synthase [Prevotella
amnii CRIS 21A-A]
gi|307345598|gb|EFN90966.1| putative phosphoribosylformylglycinamidine synthase [Prevotella
amnii CRIS 21A-A]
Length=1247
Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 22/73 (31%), Positives = 35/73 (48%), Gaps = 6/73 (8%)
Query 68 PAEVGAELNCEMKIKDRTFNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDKLFQRVGA 127
P E G ELN + D FN+ + + + D+ + +D+NQ N ++ K FQ
Sbjct 909 PVEEGRELN----LTDGEFNLKLNIDEM--RDIWYKTSYLLDRNQSLNGMAKKRFQNYKK 962
Query 128 RPDSVTCPDNLKG 140
+P +T N KG
Sbjct 963 QPLEMTFNSNFKG 975
>gi|336179710|ref|YP_004585085.1| Bifunctional purine biosynthesis protein purH [Frankia symbiont
of Datisca glomerata]
gi|334860690|gb|AEH11164.1| Bifunctional purine biosynthesis protein purH [Frankia symbiont
of Datisca glomerata]
Length=558
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/148 (28%), Positives = 60/148 (41%), Gaps = 15/148 (10%)
Query 33 HSHSVSKAEVARQITAKMT-------DAAGNKPESVTCPSDLPAEVGAELNCEMKIKD-R 84
HSH V RQI+ + DAAG+ P T + PA+ G + K R
Sbjct 402 HSHGVQ----IRQISGGLLLQSRDALDAAGDDPSGWTLEAGSPADEGTLADLAFAWKAVR 457
Query 85 TFNVNVTVTSVDGSDVKFDM--VETVDKNQVANII-SDKLFQRVGARPDSVTCPDNLKGV 141
+ N + + DG+ V M V VD ++A D++ V A PD L+ +
Sbjct 458 SVKSNAILVATDGATVGVGMGQVNRVDAARLAVARGGDRVKGAVAASDAYFPFPDGLQVL 517
Query 142 EGAKLRCRLTDGSKTYGISVIVTSVDAG 169
A +R + G V+ + DAG
Sbjct 518 IDAGVRAVVEPGGSVRDEQVVAAARDAG 545
>gi|317063430|ref|ZP_07927915.1| D-xylose ABC transporter [Fusobacterium ulcerans ATCC 49185]
gi|313689106|gb|EFS25941.1| D-xylose ABC transporter [Fusobacterium ulcerans ATCC 49185]
Length=336
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/142 (26%), Positives = 60/142 (43%), Gaps = 16/142 (11%)
Query 8 TLLASGAATALIAIPTACSFSIGTSHSHSVSKAEVARQITAKMTDAAGNKPESVTCPSDL 67
LL GA + I + + TS S+ K VA+++ A NK +++ P+D
Sbjct 166 NLLYEGALRYIEPIKNDINVILDTSISNWSPK--VAKELVTSAIKANNNKIDAILAPNDK 223
Query 68 PAEVGAELNCEMKIKDRTFNVNVTVTSVDGS--------DVKFDMVETVDKNQVANIISD 119
AE C I++ N N+T+T +D + K D+ +D ++A D
Sbjct 224 IAE-----GCVEAIEELNINRNITITGMDAELSAVKRILNEKQDVTIYMDLKELAYTAID 278
Query 120 KLFQRVGARPDSVTCP-DNLKG 140
+ F + +P S DN G
Sbjct 279 EAFSMIHNKPISTNAEYDNQSG 300
>gi|288922685|ref|ZP_06416859.1| hypothetical protein FrEUN1fDRAFT_6557 [Frankia sp. EUN1f]
gi|288345975|gb|EFC80330.1| hypothetical protein FrEUN1fDRAFT_6557 [Frankia sp. EUN1f]
Length=150
Score = 33.9 bits (76), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/63 (34%), Positives = 34/63 (54%), Gaps = 2/63 (3%)
Query 37 VSKAEVARQITAKMTDAAGNKPESVTCPSDLPAEVGAELNC-EMKIKDR-TFNVNVTVTS 94
V +AEV QI + + CP DLP ++ AE+ C + D+ TF+++V V S
Sbjct 62 VPEAEVETQIGPVYRGSGSGGAYTADCPGDLPNQMDAEMICLATRAADKSTFSIHVYVAS 121
Query 95 VDG 97
++G
Sbjct 122 ING 124
>gi|302419411|ref|XP_003007536.1| phospholipase D1 [Verticillium albo-atrum VaMs.102]
gi|261353187|gb|EEY15615.1| phospholipase D1 [Verticillium albo-atrum VaMs.102]
Length=1713
Score = 33.9 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 39/141 (28%), Positives = 66/141 (47%), Gaps = 11/141 (7%)
Query 32 SHSHSVSKAEVARQITA----KMTDAAGNKPESVTCPSD-LPAEVGAE-LNCEMKIKDRT 85
+HS + S + A+ +++ K+ AG+ + PS E G++ LN +
Sbjct 141 THSRNTSWDDPAKSLSSSLMNKLKQFAGSSTQIPRSPSSGALGEAGSQALNASPTVTRGG 200
Query 86 FNVNVTVTSVDGSDVKFDMVETVDKNQVANIISDKL-FQRVGARPDSVTCPDNLKGVEGA 144
+ T+ +GSD+ D ET D+ V++ I +L +R + PD PD+ G+
Sbjct 201 SRIPGTLAE-EGSDIDADAEETADEGAVSDTIQSRLGLRRRLSMPDP---PDHQHGLSEG 256
Query 145 KLRCRLTDGSKTYGISVIVTS 165
+ R +LT S G S IV S
Sbjct 257 EGRDQLTTPSWMRGNSWIVGS 277
Lambda K H
0.315 0.129 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 164464225230
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40