BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3043c Length=573 Score E Sequences producing significant alignments: (Bits) Value gi|15610180|ref|NP_217559.1| cytochrome C oxidase polypeptide I ... 1150 0.0 gi|289575753|ref|ZP_06455980.1| cytochrome C oxidase polypeptide... 1149 0.0 gi|240169551|ref|ZP_04748210.1| CtaD [Mycobacterium kansasii ATC... 1081 0.0 gi|183981665|ref|YP_001849956.1| cytochrome C oxidase polypeptid... 1077 0.0 gi|118617488|ref|YP_905820.1| cytochrome C oxidase polypeptide I... 1076 0.0 gi|339295879|gb|AEJ47990.1| cytochrome C oxidase polypeptide I [... 1073 0.0 gi|15827927|ref|NP_302190.1| cytochrome C oxidase, polypeptide I... 1072 0.0 gi|296171163|ref|ZP_06852611.1| cytochrome c oxidase, subunit I ... 1067 0.0 gi|342858113|ref|ZP_08714768.1| CtaD [Mycobacterium colombiense ... 1055 0.0 gi|41409189|ref|NP_962025.1| CtaD [Mycobacterium avium subsp. pa... 1048 0.0 gi|336459264|gb|EGO38209.1| cytochrome c oxidase, subunit I [Myc... 1046 0.0 gi|254821933|ref|ZP_05226934.1| CtaD [Mycobacterium intracellula... 1046 0.0 gi|120403074|ref|YP_952903.1| cytochrome-c oxidase [Mycobacteriu... 1038 0.0 gi|145224856|ref|YP_001135534.1| cytochrome-c oxidase [Mycobacte... 1034 0.0 gi|169630470|ref|YP_001704119.1| cytochrome c oxidase polypeptid... 1026 0.0 gi|108798820|ref|YP_639017.1| cytochrome-c oxidase [Mycobacteriu... 1024 0.0 gi|183983286|ref|YP_001851577.1| cytochrome C oxidase polypeptid... 1011 0.0 gi|145225972|ref|YP_001136626.1| cytochrome-c oxidase [Mycobacte... 1007 0.0 gi|118472583|ref|YP_888712.1| cytochrome C oxidase subunit I [My... 1006 0.0 gi|145223405|ref|YP_001134083.1| cytochrome-c oxidase [Mycobacte... 1005 0.0 gi|119855059|ref|YP_935664.1| cytochrome-c oxidase [Mycobacteriu... 1004 0.0 gi|120404666|ref|YP_954495.1| cytochrome-c oxidase [Mycobacteriu... 1003 0.0 gi|120406552|ref|YP_956381.1| cytochrome-c oxidase [Mycobacteriu... 1000 0.0 gi|118617026|ref|YP_905358.1| cytochrome C oxidase polypeptide I... 994 0.0 gi|145221788|ref|YP_001132466.1| cytochrome-c oxidase [Mycobacte... 993 0.0 gi|315446474|ref|YP_004079353.1| cytochrome C oxidase subunit I ... 991 0.0 gi|240168297|ref|ZP_04746956.1| cytochrome C oxidase polypeptide... 990 0.0 gi|54026265|ref|YP_120507.1| putative cytochrome c oxidase subun... 978 0.0 gi|343926898|ref|ZP_08766391.1| cytochrome c oxidase subunit I [... 978 0.0 gi|169629703|ref|YP_001703352.1| cytochrome c oxidase subunit I ... 978 0.0 gi|118464678|ref|YP_883070.1| cytochrome C oxidase, subunit I [M... 976 0.0 gi|296140636|ref|YP_003647879.1| cytochrome C oxidase subunit I ... 975 0.0 gi|40445323|ref|NP_954783.1| cytochrome c oxidase subunit I [Gor... 974 0.0 gi|296167017|ref|ZP_06849430.1| cytochrome c oxidase, subunit I ... 973 0.0 gi|240172802|ref|ZP_04751461.1| CtaD [Mycobacterium kansasii ATC... 972 0.0 gi|262203170|ref|YP_003274378.1| cytochrome C oxidase subunit I ... 971 0.0 gi|312140533|ref|YP_004007869.1| cytochrome c oxidase subunit i ... 971 0.0 gi|229493409|ref|ZP_04387198.1| cytochrome c oxidase, subunit I ... 970 0.0 gi|226365908|ref|YP_002783691.1| cytochrome c oxidase subunit I ... 969 0.0 gi|111023407|ref|YP_706379.1| cytochrome-c oxidase [Rhodococcus ... 969 0.0 gi|326381491|ref|ZP_08203185.1| cytochrome c oxidase subunit I [... 967 0.0 gi|333921294|ref|YP_004494875.1| cytochrome c oxidase subunit I ... 967 0.0 gi|226305844|ref|YP_002765804.1| cytochrome c oxidase subunit I ... 966 0.0 gi|262202538|ref|YP_003273746.1| cytochrome C oxidase subunit I ... 966 0.0 gi|108800404|ref|YP_640601.1| cytochrome-c oxidase [Mycobacteriu... 965 0.0 gi|333991411|ref|YP_004524025.1| cytochrome C oxidase polypeptid... 963 0.0 gi|126436027|ref|YP_001071718.1| cytochrome-c oxidase [Mycobacte... 962 0.0 gi|312137832|ref|YP_004005168.1| cytochrome c oxidase subunit i ... 958 0.0 gi|317506948|ref|ZP_07964718.1| cytochrome c oxidase [Segnilipar... 956 0.0 gi|54023161|ref|YP_117403.1| putative cytochrome c oxidase subun... 952 0.0 >gi|15610180|ref|NP_217559.1| cytochrome C oxidase polypeptide I [Mycobacterium tuberculosis H37Rv] gi|15842607|ref|NP_337644.1| cytochrome c oxidase, subunit I [Mycobacterium tuberculosis CDC1551] gi|31794221|ref|NP_856714.1| cytochrome C oxidase polypeptide I [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=573 Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/573 (99%), Positives = 573/573 (100%), Gaps = 0/573 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL Sbjct 1 MTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL Sbjct 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK Sbjct 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS Sbjct 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 >gi|289575753|ref|ZP_06455980.1| cytochrome C oxidase polypeptide I ctaD [Mycobacterium tuberculosis K85] gi|289540184|gb|EFD44762.1| cytochrome C oxidase polypeptide I ctaD [Mycobacterium tuberculosis K85] Length=573 Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/573 (99%), Positives = 572/573 (99%), Gaps = 0/573 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL Sbjct 1 MTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL Sbjct 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAAL GLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALLGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK Sbjct 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS Sbjct 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 >gi|240169551|ref|ZP_04748210.1| CtaD [Mycobacterium kansasii ATCC 12478] Length=581 Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/564 (94%), Positives = 547/564 (97%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLG+LEAIRPYPARTGPKG+LVYKL+TTTDHK+IGIMYCVAC FFFIGGLLAL Sbjct 1 MTAEAPPLGQLEAIRPYPARTGPKGNLVYKLVTTTDHKLIGIMYCVACFVFFFIGGLLAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELA PGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAVPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLFVFGATI AGFITPGGAADFGWTAYTPL+DA+HSPGAGGDLWI+GL VAGL Sbjct 121 LNALSFWLFVFGATIAMAGFITPGGAADFGWTAYTPLSDAVHSPGAGGDLWILGLGVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+LI FPLLTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLIVFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YDAANGGV+LWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDAANGGVMLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIA LSVAVWAHHMF TGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAGLSVAVWAHHMFVTGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF VTFL GGLTGVLLASPPLDFHV+D+YFVVAHFHYVLFGTIVF+TFAGIYFWFPK Sbjct 361 FSVGFAVTFLAGGLTGVLLASPPLDFHVSDTYFVVAHFHYVLFGTIVFSTFAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYL TDGF LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDMGMPRRYADYLSTDGFTSLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVF+SWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFRSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVERLRAEAHVGR H Sbjct 541 PAFELHYPHMVERLRAEAHVGRAH 564 >gi|183981665|ref|YP_001849956.1| cytochrome C oxidase polypeptide I CtaD [Mycobacterium marinum M] gi|183174991|gb|ACC40101.1| cytochrome C oxidase polypeptide I CtaD [Mycobacterium marinum M] Length=573 Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/573 (94%), Positives = 556/573 (98%), Gaps = 0/573 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEAIRPYPARTGPKG+LVYKL+TTTDHK+IGIMY V C FF IGGLLAL Sbjct 1 MTAEAPPLGELEAIRPYPARTGPKGNLVYKLLTTTDHKLIGIMYVVTCFIFFLIGGLLAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELA PGLQFLSNEQFNQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELATPGLQFLSNEQFNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGAT+G AGFITPGGAADFGWTAYTPLTDAIHSPG GGDLWIMG+ V GL Sbjct 121 LNAFSFWLFLFGATLGMAGFITPGGAADFGWTAYTPLTDAIHSPGVGGDLWIMGIAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+LIAFPLLTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLIAFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGVLLWQHLFWFFGHPEVYI+ALPFFG+VSEIFPVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDPANGGVLLWQHLFWFFGHPEVYILALPFFGVVSEIFPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMT+LIAVPTGIKFFNW+GTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTFLIAVPTGIKFFNWVGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF VTFLLGGL+GVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVF+TFAGIYFWFPK Sbjct 361 FSVGFAVTFLLGGLSGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFSTFAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG +M PFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGVAMIPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 PAFELHYPHMVERLRAEAHVGRHHDE A TSS Sbjct 541 PAFELHYPHMVERLRAEAHVGRHHDELAKATSS 573 >gi|118617488|ref|YP_905820.1| cytochrome C oxidase polypeptide I CtaD [Mycobacterium ulcerans Agy99] gi|118569598|gb|ABL04349.1| cytochrome C oxidase polypeptide I CtaD [Mycobacterium ulcerans Agy99] Length=573 Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/573 (94%), Positives = 556/573 (98%), Gaps = 0/573 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEAIRPYPARTGPKG+LVYKL+TTTDHK+IGIMY V C FF IGGLLAL Sbjct 1 MTAEAPPLGELEAIRPYPARTGPKGNLVYKLLTTTDHKLIGIMYVVTCFIFFLIGGLLAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELA PGLQFLSNEQFNQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELATPGLQFLSNEQFNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGAT+G AGFITPGGAADFGWTAYTPLTDAIHSPG GGDLWIMG+ V GL Sbjct 121 LNAFSFWLFLFGATLGMAGFITPGGAADFGWTAYTPLTDAIHSPGVGGDLWIMGIAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRM IFTWNI+VTSIL+LIAFPLLTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMSIFTWNILVTSILVLIAFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGVLLWQHLFWFFGHPEVYI+ALPFFG+VSEIFPVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDPANGGVLLWQHLFWFFGHPEVYILALPFFGVVSEIFPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMT+LIAVPTGIKFFNW+GTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTFLIAVPTGIKFFNWVGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF VTFLLGGL+GVLLASPPL+FHVTDSYFVVAHFHYVLFGTIVF+TFAGIYFWFPK Sbjct 361 FSVGFAVTFLLGGLSGVLLASPPLNFHVTDSYFVVAHFHYVLFGTIVFSTFAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG +MFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGVAMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 PAFELHYPHMVERLRAEAHVGRHHDE A TSS Sbjct 541 PAFELHYPHMVERLRAEAHVGRHHDELAKATSS 573 >gi|339295879|gb|AEJ47990.1| cytochrome C oxidase polypeptide I [Mycobacterium tuberculosis CCDC5079] gi|339299492|gb|AEJ51602.1| cytochrome C oxidase polypeptide I [Mycobacterium tuberculosis CCDC5180] Length=535 Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/535 (100%), Positives = 535/535 (100%), Gaps = 0/535 (0%) Query 39 MIGIMYCVACISFFFIGGLLALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPI 98 MIGIMYCVACISFFFIGGLLALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPI Sbjct 1 MIGIMYCVACISFFFIGGLLALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPI 60 Query 99 VFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLT 158 VFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLT Sbjct 61 VFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLT 120 Query 159 DAIHSPGAGGDLWIMGLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSI 218 DAIHSPGAGGDLWIMGLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSI Sbjct 121 DAIHSPGAGGDLWIMGLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSI 180 Query 219 LILIAFPLLTAALFGLAADRHLGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIV 278 LILIAFPLLTAALFGLAADRHLGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIV Sbjct 181 LILIAFPLLTAALFGLAADRHLGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIV 240 Query 279 SEIFPVFSRKPIFGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTG 338 SEIFPVFSRKPIFGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTG Sbjct 241 SEIFPVFSRKPIFGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTG 300 Query 339 IKFFNWIGTMWKGQLTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHF 398 IKFFNWIGTMWKGQLTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHF Sbjct 301 IKFFNWIGTMWKGQLTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHF 360 Query 399 HYVLFGTIVFATFAGIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMP 458 HYVLFGTIVFATFAGIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMP Sbjct 361 HYVLFGTIVFATFAGIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMP 420 Query 459 RRYADYLPTDGFQGLNVVSTIGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLE 518 RRYADYLPTDGFQGLNVVSTIGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLE Sbjct 421 RRYADYLPTDGFQGLNVVSTIGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLE 480 Query 519 WATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 WATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS Sbjct 481 WATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 535 >gi|15827927|ref|NP_302190.1| cytochrome C oxidase, polypeptide I [Mycobacterium leprae TN] gi|221230404|ref|YP_002503820.1| cytochrome C oxidase, polypeptide I [Mycobacterium leprae Br4923] gi|62900044|sp|Q9CBQ5.1|COX1_MYCLE RecName: Full=Probable cytochrome c oxidase subunit 1; AltName: Full=Cytochrome aa3 subunit 1; AltName: Full=Cytochrome c oxidase polypeptide I gi|13093480|emb|CAC30681.1| cytochrome C oxidase, polypeptide I [Mycobacterium leprae] gi|219933511|emb|CAR71823.1| cytochrome C oxidase, polypeptide I [Mycobacterium leprae Br4923] Length=574 Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/572 (95%), Positives = 555/572 (98%), Gaps = 0/572 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEA GEL+AIRPYPARTGPKG+LVYKLITTTDHKMIGIMYCVAC FFF+GGLLAL Sbjct 1 MTAEALSSGELKAIRPYPARTGPKGNLVYKLITTTDHKMIGIMYCVACFIFFFVGGLLAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA IG AGFITPGGAADFGWTAYTPLTDAIHSPG GGDLWIMGLIVAGL Sbjct 121 LNAFSFWLFLFGAAIGMAGFITPGGAADFGWTAYTPLTDAIHSPGVGGDLWIMGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVC+RAPGMTMFRMPIFTWNI+VTSIL+LIAFPLLTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCLRAPGMTMFRMPIFTWNILVTSILVLIAFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNW+GTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWVGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF VTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVF+TFAGIYFWFPK Sbjct 361 FSVGFAVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFSTFAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDE+LGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYLPTDGFQGLNVVSTIG Sbjct 421 MTGRLLDEQLGKLHFWLTFIGFHTTFLVQHWLGDMGMPRRYADYLPTDGFQGLNVVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 +FILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 SFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTS 572 PAFELHYPHMVERLR EA+VGR H E + S Sbjct 541 PAFELHYPHMVERLRDEAYVGRRHAEELVEVS 572 >gi|296171163|ref|ZP_06852611.1| cytochrome c oxidase, subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894299|gb|EFG74054.1| cytochrome c oxidase, subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] Length=585 Score = 1067 bits (2759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/564 (92%), Positives = 543/564 (97%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 LTAEAPPLGELEA+RPYP RTGPKG+L+YKLITTTDHK+IGIMY V C FFFIGGL+AL Sbjct 5 LTAEAPPLGELEAVRPYPDRTGPKGNLIYKLITTTDHKLIGIMYTVTCFVFFFIGGLMAL 64 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQ+NQLFTMHGTIMLL YATP+VFG ANLVLPLQIGAPDVAFPR Sbjct 65 LMRTELAAPGLQFLSNEQYNQLFTMHGTIMLLLYATPVVFGLANLVLPLQIGAPDVAFPR 124 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FG + GFI PGGAADFGWTAYTPL+DA+HSPGAGGDLWI GLIVAGL Sbjct 125 LNAFSFWLFLFGGLVAMGGFIVPGGAADFGWTAYTPLSDAVHSPGAGGDLWITGLIVAGL 184 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSILILIAFP+LTAALFGLAADRHL Sbjct 185 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILILIAFPILTAALFGLAADRHL 244 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YDAANGGVLLWQHLFWFFGHPEVYI+ALPFFG+V+EI PVFSRKP+FGYTTLVYAT Sbjct 245 GAHVYDAANGGVLLWQHLFWFFGHPEVYIVALPFFGVVTEIIPVFSRKPVFGYTTLVYAT 304 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQ+TFETPML Sbjct 305 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQITFETPML 364 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFLLGGLTGV+LASPPLDFHVTD+YFVVAHFHYVLFGTIVFAT+AG+YFWFPK Sbjct 365 FSVGFLVTFLLGGLTGVMLASPPLDFHVTDTYFVVAHFHYVLFGTIVFATYAGVYFWFPK 424 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYLP+DGFQ N+ ST+G Sbjct 425 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDMGMPRRYADYLPSDGFQPYNIASTVG 484 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG SMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 485 AFILGVSMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 544 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVERLRAEAHVGR H Sbjct 545 PAFELHYPHMVERLRAEAHVGRAH 568 >gi|342858113|ref|ZP_08714768.1| CtaD [Mycobacterium colombiense CECT 3035] gi|342133817|gb|EGT86997.1| CtaD [Mycobacterium colombiense CECT 3035] Length=581 Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 524/564 (93%), Positives = 547/564 (97%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLG+LEA+RPYP R GPKG+LVYKLITTTDHKMIGIMY V C +FFFIGGL+AL Sbjct 1 MTAEAPPLGQLEAVRPYPDRMGPKGNLVYKLITTTDHKMIGIMYTVTCFAFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLL YATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLLYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFS+WLF+FG I A+GFI PGGAADFGWTAYTPL+DA+HSPGAGGDLWI GLIVAGL Sbjct 121 LNAFSYWLFLFGGLIAASGFIVPGGAADFGWTAYTPLSDAVHSPGAGGDLWITGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSILILIAFP+LTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILILIAFPILTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIV+EIFPVFSRKP+FGYTTLVYAT Sbjct 241 GAHVYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVTEIFPVFSRKPVFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 F +GF++TFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAG+YFWFPK Sbjct 361 FCIGFLITFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGVYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYLP+DGFQ NV ST+G Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDLGMPRRYADYLPSDGFQPYNVASTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVERLRAEAHVGR H Sbjct 541 PAFELHYPHMVERLRAEAHVGRAH 564 >gi|41409189|ref|NP_962025.1| CtaD [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776329|ref|ZP_05217845.1| CtaD [Mycobacterium avium subsp. avium ATCC 25291] gi|62899978|sp|Q73VC3.1|COX1_MYCPA RecName: Full=Probable cytochrome c oxidase subunit 1; AltName: Full=Cytochrome aa3 subunit 1; AltName: Full=Cytochrome c oxidase polypeptide I gi|41398009|gb|AAS05639.1| CtaD [Mycobacterium avium subsp. paratuberculosis K-10] Length=581 Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/564 (93%), Positives = 547/564 (97%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEA+RPYP RTGPKG+LVYKLITTTDHKMIGIMY V C +FFFIGGL+AL Sbjct 1 MTAEAPPLGELEAVRPYPDRTGPKGNLVYKLITTTDHKMIGIMYTVTCFAFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLL YATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLLYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FG I A+GFI PGGAADFGWTAYTPL+DA+HSPGAGGDLWI GLIVAGL Sbjct 121 LNAFSFWLFLFGGLIAASGFIVPGGAADFGWTAYTPLSDAVHSPGAGGDLWITGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSILILIAFP+LTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILILIAFPILTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YDAANGGVLLWQHLFWFFGHPEVYIIALPFFGI++EI PVF+RKP+FGYTTLVYAT Sbjct 241 GAHVYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIITEIIPVFARKPVFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 F VGF++TFLLGGLTGV+LASPPLDFHVTD+YFVVAHFHYVLFGTIVFATFAG+YFWFPK Sbjct 361 FCVGFLLTFLLGGLTGVMLASPPLDFHVTDTYFVVAHFHYVLFGTIVFATFAGVYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYLP+DGFQ NV ST+G Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDLGMPRRYADYLPSDGFQPYNVASTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVERLRAEAHVGR H Sbjct 541 PAFELHYPHMVERLRAEAHVGRAH 564 >gi|336459264|gb|EGO38209.1| cytochrome c oxidase, subunit I [Mycobacterium avium subsp. paratuberculosis S397] Length=581 Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/564 (93%), Positives = 546/564 (97%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEA+RPYP RTGPKG+LVYKLITTTDHKMIGIMY V C +FFFIGGL+AL Sbjct 1 MTAEAPPLGELEAVRPYPDRTGPKGNLVYKLITTTDHKMIGIMYTVTCFAFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQ LSNEQFNQLFTMHGTIMLL YATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQLLSNEQFNQLFTMHGTIMLLLYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FG I A+GFI PGGAADFGWTAYTPL+DA+HSPGAGGDLWI GLIVAGL Sbjct 121 LNAFSFWLFLFGGLIAASGFIVPGGAADFGWTAYTPLSDAVHSPGAGGDLWITGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSILILIAFP+LTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILILIAFPILTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YDAANGGVLLWQHLFWFFGHPEVYIIALPFFGI++EI PVF+RKP+FGYTTLVYAT Sbjct 241 GAHVYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIITEIIPVFARKPVFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 F VGF++TFLLGGLTGV+LASPPLDFHVTD+YFVVAHFHYVLFGTIVFATFAG+YFWFPK Sbjct 361 FCVGFLLTFLLGGLTGVMLASPPLDFHVTDTYFVVAHFHYVLFGTIVFATFAGVYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYLP+DGFQ NV ST+G Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDLGMPRRYADYLPSDGFQPYNVASTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVERLRAEAHVGR H Sbjct 541 PAFELHYPHMVERLRAEAHVGRAH 564 >gi|254821933|ref|ZP_05226934.1| CtaD [Mycobacterium intracellulare ATCC 13950] Length=581 Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 521/564 (93%), Positives = 547/564 (97%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPPLGELEA+RPYP R GPKG+LVYKLITTTDHK+IG+MY V C +FFFIGGL+AL Sbjct 1 MTAEAPPLGELEAVRPYPDRMGPKGNLVYKLITTTDHKLIGVMYTVTCFAFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLL YATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLLYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFS+WLF+FG I A+GFI PGGAADFGWTAYTPL+DA+HSPGAGGDLWI GLI+AGL Sbjct 121 LNAFSYWLFLFGGLIAASGFIVPGGAADFGWTAYTPLSDAVHSPGAGGDLWITGLILAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSILILIAFP+LTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILILIAFPILTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYDA+NGGVLLWQHLFWFFGHPEVYIIALPFFGIV+EI PVFSRKP+FGYTTLVYAT Sbjct 241 GAHIYDASNGGVLLWQHLFWFFGHPEVYIIALPFFGIVTEIIPVFSRKPVFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF++TFLLGGLTGV+LASPPLDFHVTDSYFVVAHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFLLTFLLGGLTGVMLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMPRRYADYLP+DGFQ N+ ST+G Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDLGMPRRYADYLPSDGFQPYNIASTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVERLRAEAHVGR H Sbjct 541 PAFELHYPHMVERLRAEAHVGRAH 564 >gi|120403074|ref|YP_952903.1| cytochrome-c oxidase [Mycobacterium vanbaalenii PYR-1] gi|119955892|gb|ABM12897.1| Cytochrome-c oxidase [Mycobacterium vanbaalenii PYR-1] Length=581 Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/564 (92%), Positives = 539/564 (96%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + AEAPP+GELE RPYP R GPKG+L+YKLITTTDHK+IGIMYCV C +FF IGGL+AL Sbjct 1 MVAEAPPIGELEIRRPYPERLGPKGNLIYKLITTTDHKLIGIMYCVVCFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 MRTELA PGLQFLSNEQFNQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FMRTELATPGLQFLSNEQFNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAY+PLTDAIHSPGAGGDLWIMGL V GL Sbjct 121 LNAFSFWLFLFGALIATAGFITPGGAADFGWTAYSPLTDAIHSPGAGGDLWIMGLAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+LIAFP+LTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLIAFPILTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FS+GF+ TFLLGGL+GVLLASPPLDFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSIGFIATFLLGGLSGVLLASPPLDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGK+HFWLTFIGFH TFLVQHWLGDEGMPRRYADYLPTDGF LNVVSTIG Sbjct 421 MTGRLLDERLGKVHFWLTFIGFHATFLVQHWLGDEGMPRRYADYLPTDGFTTLNVVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGAS PF+WNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASTLPFLWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVER+R EAHVGR H Sbjct 541 PAFELHYPHMVERMRTEAHVGRAH 564 >gi|145224856|ref|YP_001135534.1| cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] gi|315445187|ref|YP_004078066.1| cytochrome C oxidase subunit I [Mycobacterium sp. Spyr1] gi|145217342|gb|ABP46746.1| Cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] gi|315263490|gb|ADU00232.1| cytochrome c oxidase, subunit I [Mycobacterium sp. Spyr1] Length=580 Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/564 (91%), Positives = 540/564 (96%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + AEAPP+GELEA RP+P R GPKG+L+YKLITTTDHK+IGIMYCVAC +FF IGGL+AL Sbjct 1 MVAEAPPIGELEARRPFPERIGPKGNLIYKLITTTDHKLIGIMYCVACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 MRTELA PGLQFLSNEQFNQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FMRTELALPGLQFLSNEQFNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAY+PLTDAIHSPGAG DLWIMGL V GL Sbjct 121 LNAFSFWLFLFGALIATAGFITPGGAADFGWTAYSPLTDAIHSPGAGADLWIMGLAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILG VNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+AFP+LTAALFGLAADRHL Sbjct 181 GTILGGVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLAFPILTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF++TFLLGGL+GVLLASPPLDFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFILTFLLGGLSGVLLASPPLDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGLSTLPFLWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHM++R+R EAHVGR H Sbjct 541 PAFELHYPHMIDRMRREAHVGRAH 564 >gi|169630470|ref|YP_001704119.1| cytochrome c oxidase polypeptide I [Mycobacterium abscessus ATCC 19977] gi|169242437|emb|CAM63465.1| Probable cytochrome c oxidase polypeptide I [Mycobacterium abscessus] Length=564 Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/564 (89%), Positives = 534/564 (95%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPP+G L+A RP+P R G +G+L+Y+LITTTDHK+IGIMY VAC +FF IGGL+AL Sbjct 1 MTAEAPPIGGLQASRPFPPRMGARGTLIYRLITTTDHKLIGIMYLVACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 MR ELA PGLQFLSNEQFNQLFTMHGT+MLLFYATPIVFGFAN+VLPLQIGAPDVAFPR Sbjct 61 FMRAELAVPGLQFLSNEQFNQLFTMHGTVMLLFYATPIVFGFANVVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA IG AGFITPGGAADFGWTAYTPLTDAIHSPGAG DLWIMGL V GL Sbjct 121 LNAFSFWLFLFGALIGIAGFITPGGAADFGWTAYTPLTDAIHSPGAGADLWIMGLAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTS+L+L+AFPLLTAALFGLAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSVLVLLAFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH++D ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVFDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALS+AVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPM+ Sbjct 301 LGIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPMI 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFL GGLTGVLLA PP+DFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFLVTFLFGGLTGVLLAMPPVDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGK HFWLTFIGFH+TFLVQHWLG++GMPRRYADYLPTDGF LN ST+G Sbjct 421 MTGRLLDERLGKFHFWLTFIGFHSTFLVQHWLGNQGMPRRYADYLPTDGFTFLNSFSTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGAS PF+WNVFKS+RYGEVVTVDDPWGYGNSLEWATSCPPPRHNF+ELPRIRSER Sbjct 481 AFILGASTLPFLWNVFKSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFSELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHM ER+RAEAHVG H Sbjct 541 PAFELHYPHMSERMRAEAHVGGGH 564 >gi|108798820|ref|YP_639017.1| cytochrome-c oxidase [Mycobacterium sp. MCS] gi|119867937|ref|YP_937889.1| cytochrome-c oxidase [Mycobacterium sp. KMS] gi|126434421|ref|YP_001070112.1| cytochrome-c oxidase [Mycobacterium sp. JLS] gi|108769239|gb|ABG07961.1| Cytochrome-c oxidase [Mycobacterium sp. MCS] gi|119694026|gb|ABL91099.1| Cytochrome-c oxidase [Mycobacterium sp. KMS] gi|126234221|gb|ABN97621.1| Cytochrome-c oxidase [Mycobacterium sp. JLS] Length=576 Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/575 (89%), Positives = 547/575 (96%), Gaps = 2/575 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + AEAPP+GELEA RP+P R GPKG+L YK+ITTTDHK+IGIMYC+AC +FF +GGL+AL Sbjct 1 MVAEAPPIGELEARRPFPERLGPKGNLFYKVITTTDHKLIGIMYCIACFAFFLVGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 MRTELA PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FMRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAY+PLTDAIHSPGAGGDLWIMGL V GL Sbjct 121 LNAFSFWLFLFGALIALAGFITPGGAADFGWTAYSPLTDAIHSPGAGGDLWIMGLAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILG VNM+TTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+AFPLLTAALFGLAADRHL Sbjct 181 GTILGGVNMVTTVVCMRAPGMTMFRMPIFTWNILVTSILVLLAFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHIYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 ++IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 IAIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF++TFLLGGL+GVLLASPPLDFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFLLTFLLGGLSGVLLASPPLDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDE+LGKLHFWLTFIGFHTTFLVQHW+GDEGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDEKLGKLHFWLTFIGFHTTFLVQHWVGDEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WN+F+SWRYGE VTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGISTLPFLWNIFRSWRYGEPVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH--DEPAMVTSS 573 PAFELHYPHMVER+RAEAHVGR H DEP + +S Sbjct 541 PAFELHYPHMVERMRAEAHVGRDHHADEPKPIDAS 575 >gi|183983286|ref|YP_001851577.1| cytochrome C oxidase polypeptide I CtaD_1 [Mycobacterium marinum M] gi|183176612|gb|ACC41722.1| cytochrome C oxidase polypeptide I CtaD_1 [Mycobacterium marinum M] Length=577 Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/566 (87%), Positives = 526/566 (93%), Gaps = 0/566 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +T EAPP +LEA RP+P R GPKGSL+YK+ITTTDHKMIGIMY VAC FFFIGGL+AL Sbjct 1 MTTEAPPAHDLEARRPFPPRMGPKGSLIYKIITTTDHKMIGIMYMVACFIFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR ELA PGLQFLSNEQ+NQLFTMHGT MLLFYATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LMRAELATPGLQFLSNEQYNQLFTMHGTAMLLFYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLFVFGA I +GFI PGGAADFGWTAYTPL++A HSPG G DLWI+GL V GL Sbjct 121 LNALSFWLFVFGALIALSGFIVPGGAADFGWTAYTPLSNAAHSPGVGPDLWILGLAVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILG VNM+TTVVC+RAPGMTMFRMPIFTWNIMVTS+L+L+ FPLLTAALFGLAADRHL Sbjct 181 GTILGGVNMLTTVVCLRAPGMTMFRMPIFTWNIMVTSLLVLMIFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGV+L+QHLFWFFGHPEVY+IALPFFGIVSE+ PVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDPANGGVILFQHLFWFFGHPEVYVIALPFFGIVSEVIPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMFATGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+GQLTFE+PML Sbjct 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTFLIAVPTGLKFFNWIGTMWRGQLTFESPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FS+GF+VTFL GGLTGVLLASPPLDFHV+D+YFVVAHFHY LFGTIVFAT+AGIYFWFPK Sbjct 361 FSLGFLVTFLAGGLTGVLLASPPLDFHVSDTYFVVAHFHYTLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERL K HFWLTF+GFH TFLVQHWLG+ GMPRRYADYLPTDGFQ LNV+STIG Sbjct 421 MTGRLLDERLAKFHFWLTFLGFHATFLVQHWLGNSGMPRRYADYLPTDGFQTLNVISTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AF LG S+ PFVWNVFKSWR+GE V VDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFTLGVSVLPFVWNVFKSWRFGEPVLVDDPWGHGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDE 566 PAFELHYPHMV+RLRAEAHVGRH E Sbjct 541 PAFELHYPHMVKRLRAEAHVGRHEIE 566 >gi|145225972|ref|YP_001136626.1| cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] gi|145218435|gb|ABP47838.1| Cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] Length=581 Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/564 (90%), Positives = 541/564 (96%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + A+APP+ ELEA RP+PAR GPKG+L+Y+LITTTDHK+IG+MYCVAC +FF IGGL+AL Sbjct 1 MVADAPPIAELEARRPFPARMGPKGNLIYRLITTTDHKLIGMMYCVACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 +RTELA PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FIRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAYTPL+ AI+SPGAG DLWI+GLIV GL Sbjct 121 LNAFSFWLFLFGALIATAGFITPGGAADFGWTAYTPLSSAIYSPGAGADLWILGLIVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+AFPLLTAALF LAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLAFPLLTAALFALAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FS+GF+VTFLLGGL+GVLLASPP+DF VTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSIGFIVTFLLGGLSGVLLASPPIDFQVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLG+EGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGNEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGAS PF+WN+FKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASTLPFLWNIFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVER+RAEAHVGR H Sbjct 541 PAFELHYPHMVERMRAEAHVGRAH 564 >gi|118472583|ref|YP_888712.1| cytochrome C oxidase subunit I [Mycobacterium smegmatis str. MC2 155] gi|118173870|gb|ABK74766.1| cytochrome c oxidase, subunit I [Mycobacterium smegmatis str. MC2 155] Length=583 Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/571 (85%), Positives = 530/571 (93%), Gaps = 0/571 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +T AP GEL A RP+P R GP+ +L+YKL+TTTDHK+IG+MY VAC FFFIGGL+AL Sbjct 1 MTTHAPSAGELLARRPFPQRLGPRWTLLYKLVTTTDHKLIGMMYVVACFIFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 L+RTELA PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLV+PLQIGAPDVAFPR Sbjct 61 LLRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVVPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLF+FGA+I GF+ PGG ADFGWTAYTPL++A+HSPGAGGDLWI GLIV GL Sbjct 121 LNALSFWLFLFGASIALGGFLAPGGPADFGWTAYTPLSNAMHSPGAGGDLWIFGLIVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGM MFRMPIFTWNI+VTS+++L+AFPLLT+ALFGLAADR+L Sbjct 181 GTILGAVNMITTVVCMRAPGMIMFRMPIFTWNILVTSVIVLVAFPLLTSALFGLAADRNL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH++D ANGG +LW+HLFWFFGHPEVYIIALPFFGIV+EIFPVFSRKP+FGYTTLVYAT Sbjct 241 GAHVFDPANGGTMLWEHLFWFFGHPEVYIIALPFFGIVTEIFPVFSRKPVFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 +SI ALS+AVWAHH++ATGAVLLPFFSFMT++IAVPTGIKF NWIGTMWKGQLTFETPML Sbjct 301 ISIGALSIAVWAHHLYATGAVLLPFFSFMTFMIAVPTGIKFVNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFLLGGLTGV+LASPPLDFHVTDSYFVVAHFHYVLFGTIVFAT+AG+YFWFPK Sbjct 361 FSVGFLVTFLLGGLTGVILASPPLDFHVTDSYFVVAHFHYVLFGTIVFATYAGVYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLD+RLGKLHFWLT IGFHTTFLV HWLG EGMPRRYADYLPTDGF LN+VSTIG Sbjct 421 MTGRLLDDRLGKLHFWLTLIGFHTTFLVHHWLGAEGMPRRYADYLPTDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 +FILG SM PFVWNVFKSWRYGE VTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 SFILGVSMLPFVWNVFKSWRYGEPVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVT 571 PAFELHYPHM+ERLRAE+H GR P VT Sbjct 541 PAFELHYPHMIERLRAESHPGRTQGGPGAVT 571 >gi|145223405|ref|YP_001134083.1| cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] gi|145215891|gb|ABP45295.1| Cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] Length=581 Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/564 (90%), Positives = 540/564 (96%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + A+APP+GELEA RP+PAR GPKG+L+Y+LITTTDHK+IG+MYCVAC +FF IGGL+AL Sbjct 1 MVADAPPVGELEARRPFPARMGPKGNLIYRLITTTDHKLIGMMYCVACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 +RTELA PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FIRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAYTPL+ AI+SPGAG DLWI+GLIV GL Sbjct 121 LNAFSFWLFLFGALIATAGFITPGGAADFGWTAYTPLSSAIYSPGAGADLWILGLIVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+AFPLLTAALF LAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLAFPLLTAALFALAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FS+GF+VTFLLGGL+GVLLASPPLDF VTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSIGFIVTFLLGGLSGVLLASPPLDFQVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLG+EGMPRRYADYLP+DGF LNV+STIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGNEGMPRRYADYLPSDGFTTLNVISTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGLSTLPFLWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHM++R+R EAHVGR H Sbjct 541 PAFELHYPHMIDRMRREAHVGRSH 564 >gi|119855059|ref|YP_935664.1| cytochrome-c oxidase [Mycobacterium sp. KMS] gi|145225938|ref|YP_001136592.1| cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] gi|119697777|gb|ABL94849.1| Cytochrome-c oxidase [Mycobacterium sp. KMS] gi|145218401|gb|ABP47804.1| Cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] Length=581 Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/564 (90%), Positives = 539/564 (96%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + A+AP +GELE RP+PAR GPKG+L+Y+LITTTDHK+IGIMYCVAC +FF IGGL+AL Sbjct 1 MVADAPSVGELEVRRPFPARMGPKGNLIYRLITTTDHKLIGIMYCVACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 +RTELA PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FIRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAYTPL+ AI+SPGAG DLWI+GLIV GL Sbjct 121 LNAFSFWLFLFGALIATAGFITPGGAADFGWTAYTPLSSAINSPGAGADLWILGLIVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+AFPLLTAALF LAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLAFPLLTAALFALAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFLLGGL+GVLLASPP+DF VTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFIVTFLLGGLSGVLLASPPIDFQVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLG+EGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGNEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGAS PF+WN+FKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASTLPFLWNIFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMVER+R EAHVGR H Sbjct 541 PAFELHYPHMVERMRREAHVGRAH 564 >gi|120404666|ref|YP_954495.1| cytochrome-c oxidase [Mycobacterium vanbaalenii PYR-1] gi|119957484|gb|ABM14489.1| Cytochrome-c oxidase [Mycobacterium vanbaalenii PYR-1] Length=581 Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/562 (90%), Positives = 539/562 (96%), Gaps = 0/562 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 + A+AP +GELEA RP+PAR GPKG+L+Y+LITTTDHK+IG+MYCVAC +FF IGGL+AL Sbjct 1 MVADAPSVGELEARRPFPARMGPKGNLIYRLITTTDHKLIGMMYCVACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 +RTELA PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FIRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFSFWLF+FGA I AGFITPGGAADFGWTAYTPL+ AI+SPGAG DLWI+GLIV GL Sbjct 121 LNAFSFWLFLFGALIATAGFITPGGAADFGWTAYTPLSSAINSPGAGADLWILGLIVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+AFPLLTAALF LAADRHL Sbjct 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLAFPLLTAALFALAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHVYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFLLGGL+GVLLASPP+DF VTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFIVTFLLGGLSGVLLASPPIDFQVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLG+EGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGNEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGAS PF+WN+FKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGASTLPFLWNIFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGR 562 PAFELHYPHMVER+R EAHVGR Sbjct 541 PAFELHYPHMVERMRREAHVGR 562 >gi|120406552|ref|YP_956381.1| cytochrome-c oxidase [Mycobacterium vanbaalenii PYR-1] gi|119959370|gb|ABM16375.1| Cytochrome-c oxidase [Mycobacterium vanbaalenii PYR-1] Length=584 Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/567 (88%), Positives = 528/567 (94%), Gaps = 2/567 (0%) Query 2 TAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLALL 61 T E P L RP+PAR GPKG+L+YKLITTTDHK+IGIMY V C FF IGG++AL Sbjct 6 TVEKPT--TLVPKRPFPARLGPKGNLIYKLITTTDHKLIGIMYVVTCFVFFLIGGIMALF 63 Query 62 MRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPRL 121 +RTELA PGLQFLSNEQ+NQLFTMHGT MLLFYATPIVFGFANLVLPLQIGAPDVAFPRL Sbjct 64 IRTELAVPGLQFLSNEQYNQLFTMHGTAMLLFYATPIVFGFANLVLPLQIGAPDVAFPRL 123 Query 122 NAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGLG 181 NAFSFWLF+FGA I +GFITPGGAADFGWTAYTPL+DA++SPGAGGDLWI GL V GLG Sbjct 124 NAFSFWLFLFGALIALSGFITPGGAADFGWTAYTPLSDAMYSPGAGGDLWIFGLGVGGLG 183 Query 182 TILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHLG 241 TILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+ FPLLTAALFGLAADRHLG Sbjct 184 TILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLIFPLLTAALFGLAADRHLG 243 Query 242 AHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATL 301 AH+YD ANGGVLLWQHLFW+FGHPEVY+IALPFFGI+SE+ PVFSRKPIFGYTTL+YAT Sbjct 244 AHVYDPANGGVLLWQHLFWYFGHPEVYVIALPFFGIISEVIPVFSRKPIFGYTTLIYATF 303 Query 302 SIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPMLF 361 SI ALS+AVWAHHMFATGAVL PFFSFMT+LIAVPTGIKFFNW+GTMWKGQLTFETPMLF Sbjct 304 SIGALSMAVWAHHMFATGAVLYPFFSFMTFLIAVPTGIKFFNWLGTMWKGQLTFETPMLF 363 Query 362 SVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKM 421 SVGF+ TFLLGGL+GVLLASPPLDFHV DSYFVVAHFHYVLFGTIVFAT+AGIYFWFPKM Sbjct 364 SVGFIATFLLGGLSGVLLASPPLDFHVHDSYFVVAHFHYVLFGTIVFATYAGIYFWFPKM 423 Query 422 TGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIGA 481 TGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGF LNV+STIGA Sbjct 424 TGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFTTLNVISTIGA 483 Query 482 FILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERP 541 FILGASM PFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERP Sbjct 484 FILGASMLPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERP 543 Query 542 AFELHYPHMVERLRAEAHVGRHHDEPA 568 AFELHYPHMVER+RAEAH GR H PA Sbjct 544 AFELHYPHMVERMRAEAHAGRKHGGPA 570 >gi|118617026|ref|YP_905358.1| cytochrome C oxidase polypeptide I CtaD_1 [Mycobacterium ulcerans Agy99] gi|118569136|gb|ABL03887.1| cytochrome C oxidase polypeptide I CtaD_1 [Mycobacterium ulcerans Agy99] Length=578 Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/567 (86%), Positives = 521/567 (92%), Gaps = 1/567 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +T EAPP +LEA RP+P R GPKGSL+YK+ITTTDHKMIGIMY VAC FFFIGGL+AL Sbjct 1 MTTEAPPAHDLEARRPFPPRMGPKGSLIYKIITTTDHKMIGIMYMVACFIFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR LA PGLQFLSNEQ+NQLFTMHGT MLLFYATP+VFGFANLVLPLQIGA DVAFPR Sbjct 61 LMRAALATPGLQFLSNEQYNQLFTMHGTAMLLFYATPVVFGFANLVLPLQIGAADVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGW-TAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 LNA SFWLFVFGA I +GFI PGGAADFGW TAYTPL++A HSPG G DLWI+GL V G Sbjct 121 LNALSFWLFVFGALIALSGFIVPGGAADFGWRTAYTPLSNAAHSPGVGPDLWILGLAVGG 180 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILG VNM+TTVVC+RAPGMTMFRMPIFTWNIMVTS+L+L+ FPLLTAALFGLAADRH Sbjct 181 LGTILGGVNMLTTVVCLRAPGMTMFRMPIFTWNIMVTSLLVLMIFPLLTAALFGLAADRH 240 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 GAHIYD ANGGV+L+Q LFWFFGHPEVY+IALPFFGIVSE+ PVFSRKPIFGYTTLVYA Sbjct 241 FGAHIYDPANGGVILFQQLFWFFGHPEVYVIALPFFGIVSEVIPVFSRKPIFGYTTLVYA 300 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TLSIAALSVAVWAHHMFATGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+GQLTFE+PM Sbjct 301 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTFLIAVPTGLKFFNWIGTMWRGQLTFESPM 360 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS+GF+VTFL GGLTGVLLASPPLDFHV+D+YFVVAHFHY LFGTIVFAT+AGIYFWFP Sbjct 361 LFSLGFLVTFLAGGLTGVLLASPPLDFHVSDTYFVVAHFHYTLFGTIVFATYAGIYFWFP 420 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGRLLDERL K HFWLTF+GFH TFLVQHWLG+ GMPRRYADYLPTDGFQ LNV+STI Sbjct 421 KMTGRLLDERLAKFHFWLTFLGFHATFLVQHWLGNSGMPRRYADYLPTDGFQTLNVISTI 480 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 GAF LG S+ PFVWNVFKSWR+GE V VDDPWG+GNSL WATSCPPPRHNFTELPRIRSE Sbjct 481 GAFTLGVSVLPFVWNVFKSWRFGEPVLVDDPWGHGNSLGWATSCPPPRHNFTELPRIRSE 540 Query 540 RPAFELHYPHMVERLRAEAHVGRHHDE 566 RPAFELHYPHMV+RLRAEAHVGRH E Sbjct 541 RPAFELHYPHMVKRLRAEAHVGRHEIE 567 >gi|145221788|ref|YP_001132466.1| cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] gi|145214274|gb|ABP43678.1| Cytochrome-c oxidase [Mycobacterium gilvum PYR-GCK] Length=592 Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/566 (88%), Positives = 527/566 (94%), Gaps = 2/566 (0%) Query 1 LTAEAP--PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLL 58 +TAE+ L L RP+PAR GPKG+L+YKLITTTDHK+IGIMY V C FF IGG++ Sbjct 10 MTAESSVDKLPALTPRRPFPARVGPKGNLIYKLITTTDHKLIGIMYVVTCFVFFLIGGIM 69 Query 59 ALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAF 118 AL +RTELA PGLQFLSNEQ+NQLFTMHGT MLLFYATPIVFGFANLVLPLQIGAPDVAF Sbjct 70 ALFIRTELAMPGLQFLSNEQYNQLFTMHGTAMLLFYATPIVFGFANLVLPLQIGAPDVAF 129 Query 119 PRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVA 178 PRLNA SFWLF+FGA I AGFITPGGAADFGWTAY+PL+DAIHSPG G DLWI GL V Sbjct 130 PRLNALSFWLFLFGALIALAGFITPGGAADFGWTAYSPLSDAIHSPGVGVDLWIFGLGVG 189 Query 179 GLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADR 238 GLGTILGAVNM+TTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+ FPLLTAALFGLAADR Sbjct 190 GLGTILGAVNMVTTVVCMRAPGMTMFRMPIFTWNILVTSILVLLIFPLLTAALFGLAADR 249 Query 239 HLGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVY 298 HLGAH+YD ANGGV+LWQHLFW+FGHPEVY+IALPFFGI+SE+ PVFSRKPIFGYTTLVY Sbjct 250 HLGAHVYDPANGGVILWQHLFWYFGHPEVYVIALPFFGIISEVIPVFSRKPIFGYTTLVY 309 Query 299 ATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETP 358 AT SIAALS+AVWAHHMFATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETP Sbjct 310 ATFSIAALSMAVWAHHMFATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETP 369 Query 359 MLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWF 418 MLFSVGF++TFLLGGL+GVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFAT+AG+YFWF Sbjct 370 MLFSVGFILTFLLGGLSGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATYAGVYFWF 429 Query 419 PKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVST 478 PKMTGRLLDERLGKLHFWLTFIGFH TFLVQHWLGDEGMPRRYADYLPTDGF LN +ST Sbjct 430 PKMTGRLLDERLGKLHFWLTFIGFHLTFLVQHWLGDEGMPRRYADYLPTDGFTTLNGIST 489 Query 479 IGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRS 538 IGAF+LGASM PFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRS Sbjct 490 IGAFMLGASMLPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRS 549 Query 539 ERPAFELHYPHMVERLRAEAHVGRHH 564 ERPAFELHYPHM ER+RAEAH GR H Sbjct 550 ERPAFELHYPHMRERMRAEAHAGRSH 575 >gi|315446474|ref|YP_004079353.1| cytochrome C oxidase subunit I [Mycobacterium sp. Spyr1] gi|315264777|gb|ADU01519.1| cytochrome c oxidase, subunit I [Mycobacterium sp. Spyr1] Length=583 Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/566 (88%), Positives = 526/566 (93%), Gaps = 2/566 (0%) Query 1 LTAEAP--PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLL 58 +TAE+ L L RP+PAR GPKG+L+YKLITTTDHK+IGIMY V C FF IGG++ Sbjct 1 MTAESSVDKLPALTPRRPFPARVGPKGNLIYKLITTTDHKLIGIMYVVTCFVFFLIGGIM 60 Query 59 ALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAF 118 AL +RTELA PGLQFLSNEQ+NQLFTMHGT MLLFYATPIVFGFANLVLPLQIGAPDVAF Sbjct 61 ALFIRTELAMPGLQFLSNEQYNQLFTMHGTAMLLFYATPIVFGFANLVLPLQIGAPDVAF 120 Query 119 PRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVA 178 PRLNA SFWLF+FGA I AGFITPGGAADFGWTAY+PL+DAIHSPG G DLWI GL V Sbjct 121 PRLNALSFWLFLFGALIALAGFITPGGAADFGWTAYSPLSDAIHSPGVGVDLWIFGLGVG 180 Query 179 GLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADR 238 GLGTILGAVNM+TTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+ FPLLTAALFGLAADR Sbjct 181 GLGTILGAVNMVTTVVCMRAPGMTMFRMPIFTWNILVTSILVLLIFPLLTAALFGLAADR 240 Query 239 HLGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVY 298 HLGAH+YD ANGGV+LWQHLFW+FGHPEVY+IALPFFGI+SE+ PVFSRKPIFGYTTLVY Sbjct 241 HLGAHVYDPANGGVILWQHLFWYFGHPEVYVIALPFFGIISEVIPVFSRKPIFGYTTLVY 300 Query 299 ATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETP 358 AT SIAALS+AVWAHHMFATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQL FETP Sbjct 301 ATFSIAALSMAVWAHHMFATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLAFETP 360 Query 359 MLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWF 418 MLFSVGF++TFLLGGL+GVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFAT+AG+YFWF Sbjct 361 MLFSVGFILTFLLGGLSGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATYAGVYFWF 420 Query 419 PKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVST 478 PKMTGRLLDERLGKLHFWLTFIGFH TFLVQHWLGDEGMPRRYADYLPTDGF LN +ST Sbjct 421 PKMTGRLLDERLGKLHFWLTFIGFHLTFLVQHWLGDEGMPRRYADYLPTDGFTTLNGIST 480 Query 479 IGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRS 538 IGAF+LGASM PFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRS Sbjct 481 IGAFMLGASMLPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRS 540 Query 539 ERPAFELHYPHMVERLRAEAHVGRHH 564 ERPAFELHYPHM ER+RAEAH GR H Sbjct 541 ERPAFELHYPHMRERMRAEAHAGRSH 566 >gi|240168297|ref|ZP_04746956.1| cytochrome C oxidase polypeptide I CtaD_1 [Mycobacterium kansasii ATCC 12478] Length=575 Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/565 (87%), Positives = 531/565 (94%), Gaps = 0/565 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +T EAPP +LEA RP+PAR GPKG+L+YK+ITTTDHKMIGIMY VAC FFFIGGL+AL Sbjct 1 MTTEAPPAQDLEARRPFPARVGPKGNLIYKIITTTDHKMIGIMYMVACYIFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 L+R ELAAPGLQFLSNEQ+NQLFTMHGT MLLFYATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LIRGELAAPGLQFLSNEQYNQLFTMHGTAMLLFYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLF+FGA I +GFI PGG ADFGWTAYTPL++AIHSPG GGDLWI+GL V GL Sbjct 121 LNALSFWLFIFGALIALSGFIVPGGPADFGWTAYTPLSNAIHSPGPGGDLWILGLGVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILG VNM+TTVVCMRAPGMTMFRMPIFTWNIMVTS+L+L+ FPLLTAALFGLAADRHL Sbjct 181 GTILGGVNMLTTVVCMRAPGMTMFRMPIFTWNIMVTSVLVLMIFPLLTAALFGLAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYDAANGGV+L+QHLFWFFGHPEVY+IALPFFGI+SE+ PVF+RKPIFGYTTLVYAT Sbjct 241 GAHIYDAANGGVILFQHLFWFFGHPEVYVIALPFFGIISEVIPVFARKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 LSIAALSVAVWAHHMF TGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+GQLTFETPML Sbjct 301 LSIAALSVAVWAHHMFVTGAVLLPFFSFMTFLIAVPTGLKFFNWIGTMWRGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FS GF+VTFL GGLTGV+LASPPLDFHV+DSYFVVAHFHY LFGTIVFAT+AG+YFWFPK Sbjct 361 FSFGFLVTFLAGGLTGVMLASPPLDFHVSDSYFVVAHFHYTLFGTIVFATYAGVYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLG+ GMPRRYADYLPTDG+Q LNVVST+G Sbjct 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGNAGMPRRYADYLPTDGYQTLNVVSTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S+ PF WNVFKSWR+GE V VDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGISVLPFAWNVFKSWRFGEPVLVDDPWGHGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHD 565 PAFELHYPHMV+R+RAEAHVGRH + Sbjct 541 PAFELHYPHMVKRMRAEAHVGRHEE 565 >gi|54026265|ref|YP_120507.1| putative cytochrome c oxidase subunit I [Nocardia farcinica IFM 10152] gi|62900077|sp|Q5YRP8.1|COX1A_NOCFA RecName: Full=Probable cytochrome c oxidase subunit 1-alpha; AltName: Full=Cytochrome aa3 subunit 1-alpha; AltName: Full=Cytochrome c oxidase polypeptide I-alpha gi|54017773|dbj|BAD59143.1| putative cytochrome c oxidase subunit I [Nocardia farcinica IFM 10152] Length=581 Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/558 (85%), Positives = 518/558 (93%), Gaps = 0/558 (0%) Query 4 EAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLALLMR 63 E P+ +LEA RPYPARTGPKGS +YK++TTTD K++G MY V +SFF IGGL+ALLMR Sbjct 5 EPRPVPQLEATRPYPARTGPKGSFLYKMVTTTDPKVLGTMYLVTAMSFFMIGGLMALLMR 64 Query 64 TELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPRLNA 123 ELA PGLQFLS EQFNQLFTMHGTIMLLFYAT IVFGFAN++LPLQIGAPDVAFPRLNA Sbjct 65 GELARPGLQFLSPEQFNQLFTMHGTIMLLFYATAIVFGFANIILPLQIGAPDVAFPRLNA 124 Query 124 FSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGLGTI 183 FS+WL+ FGAT+ AGFITPGGAADFGWTAY PLTD +HSPG G DLWI+GL V+GLGTI Sbjct 125 FSYWLYAFGATMATAGFITPGGAADFGWTAYVPLTDILHSPGVGTDLWILGLAVSGLGTI 184 Query 184 LGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHLGAH 243 LG VNM+TTVVC+RAPGMTMFRMPIFTWNI VTS+L+L+AFPLLTAALFGLA DRHLG H Sbjct 185 LGGVNMLTTVVCLRAPGMTMFRMPIFTWNIAVTSVLVLLAFPLLTAALFGLAYDRHLGGH 244 Query 244 IYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATLSI 303 IYD A GG+LL+QHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATL I Sbjct 245 IYDPATGGILLYQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATLGI 304 Query 304 AALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPMLFSV 363 AALS+AVWAHHM+ATGAVLLP+FSFMT+LIAVPTG+KFFNWIGTMW+GQLTFE+PML+S+ Sbjct 305 AALSIAVWAHHMYATGAVLLPYFSFMTFLIAVPTGVKFFNWIGTMWRGQLTFESPMLWSL 364 Query 364 GFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKMTG 423 GF+VTFL GGL+GV+LASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK+TG Sbjct 365 GFLVTFLFGGLSGVILASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKITG 424 Query 424 RLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIGAFI 483 R++DERL K HFW TF+GFHTTFLVQHWLG EGMPRRYADYLP+DGF LN +STIGAF+ Sbjct 425 RMVDERLAKWHFWATFVGFHTTFLVQHWLGAEGMPRRYADYLPSDGFTTLNTISTIGAFV 484 Query 484 LGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAF 543 LGASM PF+WN+FKS+RYGEVVTVDDPWGYGNSLEWAT+CPPPRHNF ELPRIRSERPAF Sbjct 485 LGASMLPFIWNIFKSYRYGEVVTVDDPWGYGNSLEWATTCPPPRHNFYELPRIRSERPAF 544 Query 544 ELHYPHMVERLRAEAHVG 561 ELHYPHM+ER+RAEAHVG Sbjct 545 ELHYPHMIERMRAEAHVG 562 >gi|343926898|ref|ZP_08766391.1| cytochrome c oxidase subunit I [Gordonia alkanivorans NBRC 16433] gi|343763258|dbj|GAA13317.1| cytochrome c oxidase subunit I [Gordonia alkanivorans NBRC 16433] Length=594 Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/565 (83%), Positives = 516/565 (92%), Gaps = 0/565 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TA P ++ +RP+P R PKGS +YKL+TTTDHK+IG+MY AC +FF IGGL+AL Sbjct 1 MTAVDQPTTQVAPVRPFPERYQPKGSFIYKLLTTTDHKLIGMMYITACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR ELAAPG+QFLS EQFNQLFTMHGT+MLL YATPIV GFAN VLPLQIG+PDVAFPR Sbjct 61 LMRGELAAPGMQFLSTEQFNQLFTMHGTVMLLMYATPIVIGFANFVLPLQIGSPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA FWLFVFG+TI AGFITPGGAADFGWTAYTPLTDA+HSPG G DLWIMGL V+GL Sbjct 121 LNALGFWLFVFGSTIAIAGFITPGGAADFGWTAYTPLTDAVHSPGLGADLWIMGLGVSGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNM+TTVVC+RAPGMTMFRMPIFTWNI+VTS+LIL+ FPLLTAAL GL DR Sbjct 181 GTILGAVNMVTTVVCLRAPGMTMFRMPIFTWNILVTSVLILLIFPLLTAALMGLEVDRQF 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGV+LWQHLFWFFGHPEVY+IALPFFGIVSE+FPVFSRKPIFGY+ L+YAT Sbjct 241 GAHIYDPANGGVILWQHLFWFFGHPEVYVIALPFFGIVSEVFPVFSRKPIFGYSGLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L+IAALS AVWAHHM+ TGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+G +TFETPML Sbjct 301 LAIAALSAAVWAHHMYVTGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWRGHITFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFL GGLTGVLLASPPLDFH++DSYFVVAHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFIVTFLFGGLTGVLLASPPLDFHLSDSYFVVAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGR+LDERLGK+HFWLTFIGFH TFLVQHWLG+EGMPRRYADYLP+DGF LN +STIG Sbjct 421 MTGRMLDERLGKIHFWLTFIGFHMTFLVQHWLGNEGMPRRYADYLPSDGFTTLNTISTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WNVF+S+RYGEVVTVDDPWG+GNSLEWATS PPPRHNFTELPRIRSER Sbjct 481 AFILGLSTLPFLWNVFRSYRYGEVVTVDDPWGFGNSLEWATSSPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHD 565 PAFELHYPHM+ER+RAEAHVG HD Sbjct 541 PAFELHYPHMIERMRAEAHVGPGHD 565 >gi|169629703|ref|YP_001703352.1| cytochrome c oxidase subunit I [Mycobacterium abscessus ATCC 19977] gi|169241670|emb|CAM62698.1| Probable cytochrome c oxidase subunit I [Mycobacterium abscessus] Length=564 Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/562 (85%), Positives = 518/562 (93%), Gaps = 1/562 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 ++A+ L + A RP+PAR G +G+LVY+L+ TTDHK+IG+MY V C FFF+GGL+AL Sbjct 1 MSAQTQFLVPVPAQRPFPAR-GLRGTLVYRLLGTTDHKLIGVMYVVTCFGFFFVGGLMAL 59 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR EL PGLQFLSNEQ+NQLFTMHGT+MLLFYATPIVFGFANLVLPL IGAPDVAFPR Sbjct 60 LMRAELVHPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVLPLHIGAPDVAFPR 119 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA S+WLF+ G I AGFI PGGAADFGWTAY PL++A+HSPG GGDLWIMGL V G+ Sbjct 120 LNALSYWLFLCGGLITLAGFIAPGGAADFGWTAYAPLSNAVHSPGVGGDLWIMGLAVGGV 179 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTS L+LIAFPLLTAALFGLAADRHL Sbjct 180 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSWLVLIAFPLLTAALFGLAADRHL 239 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHI+D ANGG +LWQHLFWFFGHPEVYI+ALPFFGIVSEIFPVFSRKPIFGY TLVYAT Sbjct 240 GAHIFDPANGGPILWQHLFWFFGHPEVYIVALPFFGIVSEIFPVFSRKPIFGYHTLVYAT 299 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 + I LSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 300 VGIGILSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 359 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 F+VGF+VTFL GGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVF+TFAG+YFWFPK Sbjct 360 FAVGFLVTFLFGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFSTFAGVYFWFPK 419 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGK HFWLTFIGFH+TFLVQHWLG+EGMPRRYADYLP+DGF LN+VST+G Sbjct 420 MTGRLLDERLGKFHFWLTFIGFHSTFLVQHWLGNEGMPRRYADYLPSDGFTDLNIVSTVG 479 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGASM PF+WNVF S+RYGEVVTVDDPWGYGNSLEWATSCPPPRHNF+ELP+IRSER Sbjct 480 AFILGASMLPFLWNVFTSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFSELPQIRSER 539 Query 541 PAFELHYPHMVERLRAEAHVGR 562 PAFELHYPHM ER+RAEAHV R Sbjct 540 PAFELHYPHMSERMRAEAHVVR 561 >gi|118464678|ref|YP_883070.1| cytochrome C oxidase, subunit I [Mycobacterium avium 104] gi|118165965|gb|ABK66862.1| cytochrome c oxidase, subunit I [Mycobacterium avium 104] Length=543 Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/526 (93%), Positives = 510/526 (97%), Gaps = 0/526 (0%) Query 39 MIGIMYCVACISFFFIGGLLALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPI 98 MIGIMY V C +FFFIGGL+ALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLL YATP+ Sbjct 1 MIGIMYTVTCFAFFFIGGLMALLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLLYATPV 60 Query 99 VFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLT 158 VFGFANLVLPLQIGAPDVAFPRLNAFSFWLF+FG I A+GFI PGGAADFGWTAYTPL+ Sbjct 61 VFGFANLVLPLQIGAPDVAFPRLNAFSFWLFLFGGLIAASGFIVPGGAADFGWTAYTPLS 120 Query 159 DAIHSPGAGGDLWIMGLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSI 218 DA+HSPGAGGDLWI GLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNI+VTSI Sbjct 121 DAVHSPGAGGDLWITGLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSI 180 Query 219 LILIAFPLLTAALFGLAADRHLGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIV 278 LILIAFP+LTAALFGLAADRHLGAH+YDAANGGVLLWQHLFWFFGHPEVYIIALPFFGI+ Sbjct 181 LILIAFPILTAALFGLAADRHLGAHVYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGII 240 Query 279 SEIFPVFSRKPIFGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTG 338 +EI PVF+RKP+FGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTG Sbjct 241 TEIIPVFARKPVFGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTG 300 Query 339 IKFFNWIGTMWKGQLTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHF 398 IKFFNWIGTMWKGQLTFETPMLF VGF++TFLLGGLTGV+LASPPLDFHVTD+YFVVAHF Sbjct 301 IKFFNWIGTMWKGQLTFETPMLFCVGFLLTFLLGGLTGVMLASPPLDFHVTDTYFVVAHF 360 Query 399 HYVLFGTIVFATFAGIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMP 458 HYVLFGTIVFATFAG+YFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGD GMP Sbjct 361 HYVLFGTIVFATFAGVYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDLGMP 420 Query 459 RRYADYLPTDGFQGLNVVSTIGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLE 518 RRYADYLP+DGFQ NV ST+GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLE Sbjct 421 RRYADYLPSDGFQPYNVASTVGAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLE 480 Query 519 WATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGRHH 564 WATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGR H Sbjct 481 WATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGRAH 526 >gi|296140636|ref|YP_003647879.1| cytochrome C oxidase subunit I [Tsukamurella paurometabola DSM 20162] gi|296028770|gb|ADG79540.1| cytochrome c oxidase, subunit I [Tsukamurella paurometabola DSM 20162] Length=581 Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/567 (84%), Positives = 515/567 (91%), Gaps = 1/567 (0%) Query 1 LTAEA-PPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA+A P E+ A RPYP RTGPKGS +YKL+TTTDHK +GIMY V C +FF IGGL+A Sbjct 1 MTAQAHRPAVEVTAERPYPQRTGPKGSFIYKLVTTTDHKTLGIMYIVTCFAFFLIGGLMA 60 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 LLMR ELA PGLQFLS EQFNQLFTMHGT+MLL YATPIV GFAN VLPLQIGAPDVAFP Sbjct 61 LLMRAELAEPGLQFLSTEQFNQLFTMHGTVMLLLYATPIVIGFANFVLPLQIGAPDVAFP 120 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNAF +WLFVFGA + +GFI+PGGAADFGWTAYTPLTDA+HSPG G DLWIMGL V G Sbjct 121 RLNAFGYWLFVFGAIMVISGFISPGGAADFGWTAYTPLTDALHSPGPGADLWIMGLAVGG 180 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILGAVNM+TTVVCMRAPGMTMFRMPIFTWNI+VTS+LIL+AFPLLTAAL GL ADR Sbjct 181 LGTILGAVNMVTTVVCMRAPGMTMFRMPIFTWNILVTSVLILLAFPLLTAALMGLEADRQ 240 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 GAHIYD ANGGV+LWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGY+ LV A Sbjct 241 FGAHIYDPANGGVILWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYSGLVLA 300 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TL+IAALSVAVWAHHM+ATGAVLLPFFSFMT+LIAVPTG+KFFNWI TMWKG++TFE+PM Sbjct 301 TLAIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAVPTGVKFFNWIFTMWKGRITFESPM 360 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS+GF+VTFL GGLTGVLLASPPLDF V+D+YFVVAHFHYVLFGTIVFAT+AGIYFWFP Sbjct 361 LFSIGFVVTFLFGGLTGVLLASPPLDFAVSDTYFVVAHFHYVLFGTIVFATYAGIYFWFP 420 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGRLLDE LG+ HFWLTFIGFH TFLVQHWLG EGMPRRYADYL +DGF LN +ST+ Sbjct 421 KMTGRLLDEGLGRWHFWLTFIGFHMTFLVQHWLGAEGMPRRYADYLASDGFTTLNRISTV 480 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 GAFILGAS PFVWNVFKS+RYGEVVTVDDPWG+GNSLEWATSCPPPRHNFTELPRIRSE Sbjct 481 GAFILGASTLPFVWNVFKSYRYGEVVTVDDPWGFGNSLEWATSCPPPRHNFTELPRIRSE 540 Query 540 RPAFELHYPHMVERLRAEAHVGRHHDE 566 RPAFELHYPHM+ER+R EAHVG H Sbjct 541 RPAFELHYPHMIERIRTEAHVGPGHKS 567 >gi|40445323|ref|NP_954783.1| cytochrome c oxidase subunit I [Gordonia westfalica] gi|40217353|emb|CAE09104.1| putative cytochrome c oxidase subunit I [Gordonia westfalica] Length=596 Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/568 (82%), Positives = 512/568 (91%), Gaps = 0/568 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TA +P E+ A RPYP R KGS +Y ++TTTDHK+IG+MY VAC FF IGGL+AL Sbjct 1 MTAVSPRPPEVVATRPYPERRKAKGSFIYTMLTTTDHKLIGMMYIVACFGFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR EL PG+QFLS EQ+NQLFTMHGTIMLL YATPIV GFAN VLPLQIGAPDVAFPR Sbjct 61 LMRGELTTPGMQFLSTEQYNQLFTMHGTIMLLMYATPIVIGFANFVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA FWLFVFG+TI AGFITPGGAADFGWTAYTPL+DAIHSPG G D+W +GL V+GL Sbjct 121 LNALGFWLFVFGSTIAIAGFITPGGAADFGWTAYTPLSDAIHSPGVGSDMWFLGLTVSGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNM+TTV+C+RAPGMTMFRMPIFTWNI+VTS+LIL+ FPLLTAAL G DR Sbjct 181 GTILGAVNMVTTVICLRAPGMTMFRMPIFTWNILVTSVLILLVFPLLTAALLGAEVDRQF 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH++D ANGG +LWQH+FWFFGHPEVYIIALPFFGIVSEIFPVFSRKP+FGY+ LVYAT Sbjct 241 GAHLFDPANGGAILWQHMFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPLFGYSGLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L+IAALSVAVWAHHM+ TGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+G +TFETPML Sbjct 301 LAIAALSVAVWAHHMYVTGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWRGHMTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGFMVTFL GGLTGVLLASPP+DF ++DSYFVVAHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFMVTFLFGGLTGVLLASPPIDFQLSDSYFVVAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGK+HFWLTFIGFH TFLVQHWLG EGMPRRYADYLP+DGF LN++ST G Sbjct 421 MTGRLLDERLGKIHFWLTFIGFHLTFLVQHWLGAEGMPRRYADYLPSDGFTTLNIISTAG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AF+LG S PF+WNVF+S+RYGEVVTVDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFVLGVSTLPFLWNVFRSYRYGEVVTVDDPWGFGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPA 568 PAFELHYPHMVERLRAEAHVG H EP+ Sbjct 541 PAFELHYPHMVERLRAEAHVGTRHGEPS 568 >gi|296167017|ref|ZP_06849430.1| cytochrome c oxidase, subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897647|gb|EFG77240.1| cytochrome c oxidase, subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] Length=581 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/564 (86%), Positives = 526/564 (94%), Gaps = 0/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPP LEA RP+P R GPKG+L+YK+I+TTDHKMIGIMY VAC FFFIGGL+AL Sbjct 1 MTAEAPPTAALEARRPFPDRIGPKGNLIYKVISTTDHKMIGIMYMVACFVFFFIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 L+R ELA PGLQFLSNEQ+NQLFTMHGT MLLFYATP+VFGFANLVLPLQIGAPDVAFPR Sbjct 61 LLRLELARPGLQFLSNEQYNQLFTMHGTAMLLFYATPVVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLFV GA I GF+ PGGAADFGWTAYTPL+DA+HSPGAGGDLWI+G+ V GL Sbjct 121 LNALSFWLFVCGALIALGGFVIPGGAADFGWTAYTPLSDAVHSPGAGGDLWILGVGVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVC+RAPGMTMFRMPIFTWNI+VTS+L+LI FPLLTAALF L ADR L Sbjct 181 GTILGAVNMITTVVCLRAPGMTMFRMPIFTWNILVTSVLVLIVFPLLTAALFALEADRRL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGV+L+QHLFWFFGHPEVY+IALPFFGI+SEI PVFSRKP+FGYTTLVYAT Sbjct 241 GAHIYDPANGGVMLFQHLFWFFGHPEVYVIALPFFGIISEIVPVFSRKPLFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L+IAALS+AVWAHHM+ATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LAIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 F++GF++TFL+GGLTGVLLASPPLDFH+TD+YFVVAHFHY LFGTIVFAT+AGIYFWFPK Sbjct 361 FAIGFLLTFLIGGLTGVLLASPPLDFHITDTYFVVAHFHYTLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLTF GFHTTFLVQHWLGD GMPRRYADYLPTDGFQ LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTFAGFHTTFLVQHWLGDSGMPRRYADYLPTDGFQTLNLVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFIL AS+ PFVWNVFKSWRYGE V VDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILAASVLPFVWNVFKSWRYGEPVLVDDPWGHGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHMV R+RAEA+VGR Sbjct 541 PAFELHYPHMVGRMRAEAYVGRRR 564 >gi|240172802|ref|ZP_04751461.1| CtaD [Mycobacterium kansasii ATCC 12478] Length=575 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/566 (86%), Positives = 520/566 (92%), Gaps = 0/566 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TAEAPP L RP+PAR+GPKG+LVYKL+TTTDHK IG+MY V + FF+ GL+AL Sbjct 1 MTAEAPPAAPLYPRRPFPARSGPKGALVYKLVTTTDHKTIGVMYVVTSYALFFVAGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 L+RTELAAPGLQFLSNEQ+NQLFTMHGTIMLL YATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 LIRTELAAPGLQFLSNEQYNQLFTMHGTIMLLLYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFS+WLF+FGA I AGFITPGGAADFGWTAYTPL++AIHSPGAGGDLWIMGLIVAGL Sbjct 121 LNAFSYWLFLFGALITLAGFITPGGAADFGWTAYTPLSNAIHSPGAGGDLWIMGLIVAGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVV MRAPGMTMFRMPIFTWNI+VTSIL+LIAFP LTAALF LA DRHL Sbjct 181 GTILGAVNMITTVVSMRAPGMTMFRMPIFTWNILVTSILVLIAFPPLTAALFALAYDRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGG +LWQHLFWFFGHPEVYI+ALPFFGIV+EI PVFSRKPIFGYTTLVYAT Sbjct 241 GAHIYDPANGGPILWQHLFWFFGHPEVYIVALPFFGIVTEIIPVFSRKPIFGYTTLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L IA LS+ VWAHHMFATGAVLLPFFS +YLIAVPTGIKFFNWIGTMWKGQLTFETPML Sbjct 301 LGIAGLSMTVWAHHMFATGAVLLPFFSLTSYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 ++ GF+VTFLLGGL+GVLLASPPLDFHV D+YFVVAHFHYVLFGTIVFA+F G+YFWFPK Sbjct 361 WAFGFLVTFLLGGLSGVLLASPPLDFHVHDTYFVVAHFHYVLFGTIVFASFGGVYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGKLHFWLT IGFHTTFLVQHWLG+ GMPRRYADYL TDGFQ LN+VSTIG Sbjct 421 MTGRLLDERLGKLHFWLTLIGFHTTFLVQHWLGNMGMPRRYADYLATDGFQPLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 A ILG SM PFVWNVFKSWRYGE V+VDDPWGYGNSLEWAT+CPPPRHNFTELPR+RSER Sbjct 481 ALILGVSMLPFVWNVFKSWRYGEPVSVDDPWGYGNSLEWATTCPPPRHNFTELPRVRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDE 566 PAFELHYPHMV R+R E H+G H E Sbjct 541 PAFELHYPHMVPRMREELHLGHHTRE 566 >gi|262203170|ref|YP_003274378.1| cytochrome C oxidase subunit I [Gordonia bronchialis DSM 43247] gi|262086517|gb|ACY22485.1| cytochrome c oxidase, subunit I [Gordonia bronchialis DSM 43247] Length=593 Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/573 (82%), Positives = 514/573 (90%), Gaps = 0/573 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TA P ++ +RP+P R PKGS YKLITTTDHK+IG+MY AC +FF IGGL+AL Sbjct 1 MTAVDQPTTQVAPVRPFPERYQPKGSFFYKLITTTDHKLIGMMYITACFAFFLIGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR ELA PG+QFLS EQFNQLFTMHGT+MLL YATPIV GFAN VLPLQIG+PDVAFPR Sbjct 61 LMRGELAHPGMQFLSTEQFNQLFTMHGTVMLLMYATPIVIGFANFVLPLQIGSPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA FWLFVFG+T+ GFITPGGAADFGWTAYTPLTDA+HSPG G DLWIMGL V+GL Sbjct 121 LNAMGFWLFVFGSTVAVGGFITPGGAADFGWTAYTPLTDAVHSPGVGADLWIMGLGVSGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNM+TTVVC+R PGMTMFRMPIFTWNI+VTS+LIL+ FPLLTAAL GL DR Sbjct 181 GTILGAVNMVTTVVCLRCPGMTMFRMPIFTWNILVTSVLILLIFPLLTAALLGLEVDRQF 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAH+YD ANGGV+LWQHLFWFFGHPEVY+IALPFFGIVSE+FPVFSRKPIFGY+ LVYAT Sbjct 241 GAHLYDPANGGVILWQHLFWFFGHPEVYVIALPFFGIVSEVFPVFSRKPIFGYSGLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L+IAALSVAVWAHHM+ TGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+G +TFE+PML Sbjct 301 LAIAALSVAVWAHHMYVTGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWRGHITFESPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF+VTFL GGLTGVLLASPPLDFH++DSYFVVAHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFIVTFLFGGLTGVLLASPPLDFHLSDSYFVVAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGR+LDE LGK HFWLTFIGFHTTFLVQHWLG+EGMPRRYADYLP+DGF LN+VST+G Sbjct 421 MTGRMLDEGLGKWHFWLTFIGFHTTFLVQHWLGNEGMPRRYADYLPSDGFTTLNMVSTLG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WNVF+S+RYGEVVT DDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGLSTLPFLWNVFRSYRYGEVVTTDDPWGFGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 PAFELHYPHMVER+RAEAHVG H + V Sbjct 541 PAFELHYPHMVERMRAEAHVGPGHGHDSKVVED 573 >gi|312140533|ref|YP_004007869.1| cytochrome c oxidase subunit i [Rhodococcus equi 103S] gi|311889872|emb|CBH49189.1| cytochrome c oxidase subunit I [Rhodococcus equi 103S] Length=579 Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/565 (84%), Positives = 516/565 (92%), Gaps = 2/565 (0%) Query 1 LTAEAP-PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA AP P+ E+ A RPYP R GPKGS +YK++TTTD K++GIMY V +FF IGGL+A Sbjct 1 MTAVAPQPVPEIAA-RPYPPRQGPKGSFIYKMVTTTDPKVLGIMYLVTSFAFFLIGGLMA 59 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 LLMRTELA PGLQFLSNEQFNQLFTMHGTIMLL YATP+VFGFAN ++PLQIGAPDVAFP Sbjct 60 LLMRTELAVPGLQFLSNEQFNQLFTMHGTIMLLLYATPVVFGFANYIVPLQIGAPDVAFP 119 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNAFS+WL++FGA I AGFITPGGAADFGWTAYTPLT A+HSPG G DLW++GL VAG Sbjct 120 RLNAFSYWLYLFGALITTAGFITPGGAADFGWTAYTPLTSALHSPGVGADLWVLGLAVAG 179 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILG VN ITT+VC+RAPGMTMFRMPIFTWNI++TSIL+L+AFPLLTAA GL DRH Sbjct 180 LGTILGGVNFITTIVCLRAPGMTMFRMPIFTWNILITSILVLLAFPLLTAAFMGLFVDRH 239 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 LG HI+D A GGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGY+ LVYA Sbjct 240 LGGHIFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYSGLVYA 299 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 T++IAALS+AVWAHHM+ATGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMWKGQLTFE+PM Sbjct 300 TMAIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGQLTFESPM 359 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFSVGF+VTFL GGL+GVLLASPP+DFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFP Sbjct 360 LFSVGFLVTFLFGGLSGVLLASPPIDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFP 419 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGR++DERL K HFW TFIGFH TFLVQHWLG EGMPRRYADYLPTDGF LN +STI Sbjct 420 KMTGRMMDERLAKWHFWTTFIGFHATFLVQHWLGAEGMPRRYADYLPTDGFTTLNTISTI 479 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 G+FILGAS PF+WNVFKS+RYGEVV VDDPWGYGNSLEWAT+CPPPRHNFTELPRIRSE Sbjct 480 GSFILGASTLPFLWNVFKSYRYGEVVKVDDPWGYGNSLEWATTCPPPRHNFTELPRIRSE 539 Query 540 RPAFELHYPHMVERLRAEAHVGRHH 564 RPAFELHYPHMVER+R EAHVG H Sbjct 540 RPAFELHYPHMVERMRDEAHVGIGH 564 >gi|229493409|ref|ZP_04387198.1| cytochrome c oxidase, subunit I [Rhodococcus erythropolis SK121] gi|229319725|gb|EEN85557.1| cytochrome c oxidase, subunit I [Rhodococcus erythropolis SK121] Length=659 Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/565 (82%), Positives = 514/565 (91%), Gaps = 1/565 (0%) Query 1 LTAEAP-PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA AP P+ + RPYP R GPKGS ++K+ITTTD K++GIMY I+FF IGGL+A Sbjct 64 VTAVAPQPVPTIAPARPYPPRQGPKGSFIFKMITTTDPKVLGIMYLATSIAFFLIGGLMA 123 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 L+MR ELA PG+QFLSNEQFNQLFTMHGTIMLL YATPIVFGFAN +LPLQIGAPDVAFP Sbjct 124 LMMRAELAVPGMQFLSNEQFNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFP 183 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNAFS+WL++FGA I AGF+TPGGAADFGWTAYTPLT A+HSPG G DLW++GL VAG Sbjct 184 RLNAFSYWLYLFGAIITTAGFVTPGGAADFGWTAYTPLTSALHSPGVGADLWVLGLAVAG 243 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILG VNM+TTV+C+RAPGMTMFRMPIFTWNI +TSILIL+AFPLLTAA GL DRH Sbjct 244 LGTILGGVNMVTTVICLRAPGMTMFRMPIFTWNIFITSILILLAFPLLTAAFMGLFVDRH 303 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 LG HI+D A GGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGY+ LVYA Sbjct 304 LGGHIFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYSGLVYA 363 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TL+IAALS+AVWAHHM+ATGAVLLP+FSFMT+LIAVPTG+K FNWIGTMWKGQLTFE+PM Sbjct 364 TLAIAALSIAVWAHHMYATGAVLLPYFSFMTFLIAVPTGVKIFNWIGTMWKGQLTFESPM 423 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS+GF++TFL GGL+GV+LASPPLDFHVTDSYFVVAHFHYV+FGT+VFAT+AGIYFWFP Sbjct 424 LFSIGFLITFLFGGLSGVILASPPLDFHVTDSYFVVAHFHYVVFGTVVFATYAGIYFWFP 483 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGR++DERLGK HFW TF+GFH TFLVQHWLG EGMPRRYADYLP+DGF LN VSTI Sbjct 484 KMTGRMMDERLGKWHFWTTFVGFHGTFLVQHWLGAEGMPRRYADYLPSDGFTVLNSVSTI 543 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 AF+LGAS PF+WNVFKS+RYGEVVTVDDPWGYGNSLEWAT+CPPPRHNFTELPRIRSE Sbjct 544 FAFVLGASTLPFIWNVFKSYRYGEVVTVDDPWGYGNSLEWATTCPPPRHNFTELPRIRSE 603 Query 540 RPAFELHYPHMVERLRAEAHVGRHH 564 RPAFELHYPHMVER+RAEAHVG H Sbjct 604 RPAFELHYPHMVERMRAEAHVGPGH 628 >gi|226365908|ref|YP_002783691.1| cytochrome c oxidase subunit I [Rhodococcus opacus B4] gi|226244398|dbj|BAH54746.1| cytochrome c oxidase subunit I [Rhodococcus opacus B4] Length=596 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/565 (83%), Positives = 515/565 (92%), Gaps = 1/565 (0%) Query 1 LTAEAP-PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA AP P+ + A RPYP R GPKGS ++K+ITTTD K++GIMY I+FF IGGL+A Sbjct 1 MTAVAPQPVPAIAAARPYPPRQGPKGSFIFKMITTTDPKVLGIMYLTTSIAFFLIGGLMA 60 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 L+MR ELA PG+QFLSNEQFNQLFTMHGTIMLL YATPIVFGFAN +LPLQIGAPDVAFP Sbjct 61 LMMRAELAVPGMQFLSNEQFNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFP 120 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNAFS+WL+VFGA I AGFITPGGAADFGWTAYTPLT A+HSPG G DLW+MGL VAG Sbjct 121 RLNAFSYWLYVFGAIITTAGFITPGGAADFGWTAYTPLTSALHSPGVGADLWVMGLAVAG 180 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILG VNMITTV+C+RAPGMTMFRMPIFTWNI +TSILIL+AFPLLTAA GL DRH Sbjct 181 LGTILGGVNMITTVICLRAPGMTMFRMPIFTWNIFITSILILLAFPLLTAAFMGLFVDRH 240 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 LG HI+D A GGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKP+FGY+ LVYA Sbjct 241 LGGHIFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPVFGYSGLVYA 300 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TL+IAALS+AVWAHHM+ATGAVLLP+FSFMT+LIAVPTG+K FNWIGTMWKGQLTFE+PM Sbjct 301 TLAIAALSIAVWAHHMYATGAVLLPYFSFMTFLIAVPTGVKIFNWIGTMWKGQLTFESPM 360 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS+GF++TFL GGL+GV+LASPPLDFHVTD+YFVVAHFHYV+FGT+VFAT+AGIYFWFP Sbjct 361 LFSIGFLITFLFGGLSGVILASPPLDFHVTDTYFVVAHFHYVVFGTVVFATYAGIYFWFP 420 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGR++DERLGK HFW TFIGFH TFLVQHWLG+EGMPRRYADYLP+DGF LN STI Sbjct 421 KMTGRMMDERLGKWHFWTTFIGFHGTFLVQHWLGNEGMPRRYADYLPSDGFTFLNSFSTI 480 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 AF+LGAS PF+WNVFKS+RYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE Sbjct 481 FAFVLGASTLPFIWNVFKSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 540 Query 540 RPAFELHYPHMVERLRAEAHVGRHH 564 RPAFELHYPHMVER++AEAHVG H Sbjct 541 RPAFELHYPHMVERMKAEAHVGPGH 565 >gi|111023407|ref|YP_706379.1| cytochrome-c oxidase [Rhodococcus jostii RHA1] gi|110822937|gb|ABG98221.1| cytochrome-c oxidase [Rhodococcus jostii RHA1] Length=596 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/565 (83%), Positives = 515/565 (92%), Gaps = 1/565 (0%) Query 1 LTAEAP-PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA AP P+ + A RPYP R GPKGS ++K+ITTTD K++GIMY I+FF IGGL+A Sbjct 1 MTAVAPQPVPAIAAARPYPPRQGPKGSFIFKMITTTDPKVLGIMYLTTSIAFFLIGGLMA 60 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 L+MR ELA PG+QFLSNEQFNQLFTMHGTIMLL YATPIVFGFAN +LPLQIGAPDVAFP Sbjct 61 LMMRAELAVPGMQFLSNEQFNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFP 120 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNAFS+WL+VFGA I AGFITPGGAADFGWTAYTPLT A+HSPG G DLW+MGL VAG Sbjct 121 RLNAFSYWLYVFGAIITTAGFITPGGAADFGWTAYTPLTSALHSPGVGADLWVMGLAVAG 180 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILG VNMITTV+C+RAPGMTMFRMPIFTWNI +TSILIL+AFPLLTAA GL DRH Sbjct 181 LGTILGGVNMITTVICLRAPGMTMFRMPIFTWNIFITSILILLAFPLLTAAFMGLFVDRH 240 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 LG HI+D A GGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKP+FGY+ LVYA Sbjct 241 LGGHIFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPVFGYSGLVYA 300 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TL+IAALS+AVWAHHM+ATGAVLLP+FSFMT+LIAVPTG+K FNWIGTMWKGQLTFE+PM Sbjct 301 TLAIAALSIAVWAHHMYATGAVLLPYFSFMTFLIAVPTGVKIFNWIGTMWKGQLTFESPM 360 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS+GF++TFL GGL+GV+LASPPLDFHVTD+YFVVAHFHYV+FGT+VFAT+AGIYFWFP Sbjct 361 LFSIGFLITFLFGGLSGVILASPPLDFHVTDTYFVVAHFHYVVFGTVVFATYAGIYFWFP 420 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGR++DERLGK HFW TFIGFH TFLVQHWLG+EGMPRRYADYLP+DGF LN STI Sbjct 421 KMTGRMMDERLGKWHFWTTFIGFHGTFLVQHWLGNEGMPRRYADYLPSDGFTFLNTFSTI 480 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 AF+LGAS PF+WNVFKS+RYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE Sbjct 481 FAFVLGASTLPFIWNVFKSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 540 Query 540 RPAFELHYPHMVERLRAEAHVGRHH 564 RPAFELHYPHMVER++AEAHVG H Sbjct 541 RPAFELHYPHMVERMKAEAHVGPGH 565 >gi|326381491|ref|ZP_08203185.1| cytochrome c oxidase subunit I [Gordonia neofelifaecis NRRL B-59395] gi|326199738|gb|EGD56918.1| cytochrome c oxidase subunit I [Gordonia neofelifaecis NRRL B-59395] Length=557 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/551 (85%), Positives = 505/551 (92%), Gaps = 0/551 (0%) Query 11 LEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLALLMRTELAAPG 70 +EA RPYPAR PKGS YKLITTTDHK+IG MY CI+FF IGGL+ALLMR EL PG Sbjct 1 MEAERPYPARVQPKGSFFYKLITTTDHKLIGQMYITTCIAFFLIGGLMALLMRAELTHPG 60 Query 71 LQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPRLNAFSFWLFV 130 LQFLSNEQFNQLFTMHGT+MLL YATPIV GFAN VLPLQIGAPDVAFPRLNA +WLF+ Sbjct 61 LQFLSNEQFNQLFTMHGTVMLLMYATPIVIGFANFVLPLQIGAPDVAFPRLNALGYWLFL 120 Query 131 FGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGLGTILGAVNMI 190 FG + GF+TPGGAADFGWTAYTPLTDA+HSPG G D WIMGL VAGLGTILGAVNMI Sbjct 121 FGNLVALGGFLTPGGAADFGWTAYTPLTDAVHSPGVGADFWIMGLGVAGLGTILGAVNMI 180 Query 191 TTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHLGAHIYDAANG 250 TTVVC+RAPGMTMFRMPIFTWNI+VTS+LIL+ FPLLTAAL GL DR GAH+YD ANG Sbjct 181 TTVVCLRAPGMTMFRMPIFTWNILVTSVLILLIFPLLTAALMGLEVDRQFGAHLYDPANG 240 Query 251 GVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATLSIAALSVAV 310 GV+LWQHLFWFFGHPEVY+IALPFFGIVSE+FPVFSRKP FGY+ LVYATL+IAALSVAV Sbjct 241 GVILWQHLFWFFGHPEVYVIALPFFGIVSEVFPVFSRKPTFGYSGLVYATLAIAALSVAV 300 Query 311 WAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPMLFSVGFMVTFL 370 WAHHM+ TG+VLLPFFSFMT+LIAVPTG+KFFNWIGTMWKG++TFETPMLF++GF+VTFL Sbjct 301 WAHHMYVTGSVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGRITFETPMLFAIGFIVTFL 360 Query 371 LGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKMTGRLLDERL 430 GGLTGVLLASPPLDFH++D+YFVVAHFHYVLFGTIVFATF+GIYFWFPKMTGR+LDE L Sbjct 361 FGGLTGVLLASPPLDFHISDTYFVVAHFHYVLFGTIVFATFSGIYFWFPKMTGRMLDETL 420 Query 431 GKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIGAFILGASMFP 490 GK HFWLTFIGFHTTFLVQHWLG+EGMPRRYADYLP+DGF LNVVST+GAFILG S P Sbjct 421 GKWHFWLTFIGFHTTFLVQHWLGNEGMPRRYADYLPSDGFTTLNVVSTVGAFILGLSTLP 480 Query 491 FVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHM 550 FVWNVFKS+RYGEVVTVDDPWG+GN LEWATSCPPPRHNFTELPRIRSERPAFELHYPHM Sbjct 481 FVWNVFKSYRYGEVVTVDDPWGFGNGLEWATSCPPPRHNFTELPRIRSERPAFELHYPHM 540 Query 551 VERLRAEAHVG 561 VER+R+EAHVG Sbjct 541 VERMRSEAHVG 551 >gi|333921294|ref|YP_004494875.1| cytochrome c oxidase subunit I [Amycolicicoccus subflavus DQS3-9A1] gi|333483515|gb|AEF42075.1| Cytochrome c oxidase, subunit I [Amycolicicoccus subflavus DQS3-9A1] Length=589 Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/564 (84%), Positives = 514/564 (92%), Gaps = 3/564 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TA AP + + RPYP R PKGSL+Y ++TTTDHK+IG+MY FF +GG++AL Sbjct 1 MTAVAP---KPDLDRPYPPRHKPKGSLIYDMMTTTDHKLIGMMYLTTSFFFFLVGGVMAL 57 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR ELA PGLQFLSNEQFNQLFTMHGT+MLL YATPIVFGFAN++LPLQIG+PDVAFPR Sbjct 58 LMRAELAVPGLQFLSNEQFNQLFTMHGTVMLLLYATPIVFGFANVILPLQIGSPDVAFPR 117 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNAFS+WL++ GA I +GF+TPGGAADFGWTAYTPL+ AIHSPG GGDLWIMGL V GL Sbjct 118 LNAFSYWLYLLGALIAVSGFVTPGGAADFGWTAYTPLSTAIHSPGPGGDLWIMGLAVGGL 177 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNMITTVVC+R PGMTMFRMPIFTWNI+VTS+L+L+AFPLLTAAL GL ADR L Sbjct 178 GTILGAVNMITTVVCLRCPGMTMFRMPIFTWNILVTSVLVLLAFPLLTAALLGLFADRQL 237 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GA+IYD ANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYT LVYAT Sbjct 238 GANIYDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTGLVYAT 297 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L+IAALS+AVWAHHM+ATGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMWKG LTFETPM+ Sbjct 298 LAIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGHLTFETPMI 357 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FS+GF+VTFL GGL+GVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK Sbjct 358 FSLGFLVTFLFGGLSGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 417 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGR+LDERLGK HFW TFIGFHTTFLVQHW+G+EGMPRRYADYLP DGF LN +STIG Sbjct 418 MTGRMLDERLGKWHFWTTFIGFHTTFLVQHWVGNEGMPRRYADYLPGDGFTTLNTISTIG 477 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILGAS PF+WNVFKS R+GEVV+VDDPWGYGNSLEWATSCPPPRHNF ELPRIRSER Sbjct 478 AFILGASTIPFIWNVFKSIRFGEVVSVDDPWGYGNSLEWATSCPPPRHNFYELPRIRSER 537 Query 541 PAFELHYPHMVERLRAEAHVGRHH 564 PAFELHYPHM+ER+R EAHVG H Sbjct 538 PAFELHYPHMIERMRDEAHVGPGH 561 >gi|226305844|ref|YP_002765804.1| cytochrome c oxidase subunit I [Rhodococcus erythropolis PR4] gi|226184961|dbj|BAH33065.1| cytochrome c oxidase subunit I [Rhodococcus erythropolis PR4] Length=596 Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/565 (82%), Positives = 514/565 (91%), Gaps = 1/565 (0%) Query 1 LTAEAP-PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA AP P+ + RPYP R GPKGS ++K+ITTTD K++GIMY I+FF IGGL+A Sbjct 1 MTAVAPQPVPTIAPARPYPPRQGPKGSFIFKMITTTDPKVLGIMYLATSIAFFLIGGLMA 60 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 L+MR ELA PG+QFLSNEQFNQLFTMHGTIMLL YATPIVFGFAN +LPLQIGAPDVAFP Sbjct 61 LMMRAELAVPGMQFLSNEQFNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFP 120 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNAFS+WL++FGA I AGF+TPGGAADFGWTAYTPLT A+HSPG G DLW++GL VAG Sbjct 121 RLNAFSYWLYLFGAIITTAGFVTPGGAADFGWTAYTPLTSALHSPGVGADLWVLGLAVAG 180 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILG VNM+TTV+C+RAPGMTMFRMPIFTWNI +TSILIL+AFPLLTAA GL DRH Sbjct 181 LGTILGGVNMVTTVICLRAPGMTMFRMPIFTWNIFITSILILLAFPLLTAAFMGLFVDRH 240 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 LG HI+D A GGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGY+ LVYA Sbjct 241 LGGHIFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYSGLVYA 300 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TL+IAALS+AVWAHHM+ATGAVLLP+FSFMT+LIAVPTG+K FNWIGTMWKGQLTFE+PM Sbjct 301 TLAIAALSIAVWAHHMYATGAVLLPYFSFMTFLIAVPTGVKIFNWIGTMWKGQLTFESPM 360 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS+GF++TFL GGL+GV+LASPPLDFHVTDSYFVVAHFHYV+FGT+VFAT+AGIYFWFP Sbjct 361 LFSIGFLITFLFGGLSGVILASPPLDFHVTDSYFVVAHFHYVVFGTVVFATYAGIYFWFP 420 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGR++DERLGK HFW TF+GFH TFLVQHWLG EGMPRRYADYLP+DGF LN VSTI Sbjct 421 KMTGRMMDERLGKWHFWTTFVGFHGTFLVQHWLGAEGMPRRYADYLPSDGFTVLNSVSTI 480 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 AF+LGAS PF+WNVFKS+RYGEVVTVDDPWGYGNSLEWAT+CPPPRHNFTELPRIRSE Sbjct 481 FAFVLGASTLPFIWNVFKSYRYGEVVTVDDPWGYGNSLEWATTCPPPRHNFTELPRIRSE 540 Query 540 RPAFELHYPHMVERLRAEAHVGRHH 564 RPAFELHYPHMVER+RAEAHVG H Sbjct 541 RPAFELHYPHMVERMRAEAHVGPGH 565 >gi|262202538|ref|YP_003273746.1| cytochrome C oxidase subunit I [Gordonia bronchialis DSM 43247] gi|262085885|gb|ACY21853.1| cytochrome c oxidase, subunit I [Gordonia bronchialis DSM 43247] Length=594 Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/566 (81%), Positives = 512/566 (91%), Gaps = 0/566 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +TA +P E+ A RPYP R KGS +Y ++TTTDHK+IG+MY VAC FF +GGL+AL Sbjct 1 MTAVSPRPPEVVAKRPYPERRKSKGSFIYTMLTTTDHKLIGMMYIVACFGFFLVGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 LMR EL PG+QFLS EQ+NQLFTMHGTIMLL YATPIV GFAN VLPLQIGAPDVAFPR Sbjct 61 LMRGELTTPGMQFLSTEQYNQLFTMHGTIMLLMYATPIVIGFANFVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA FWLF+FG+++ AGFITPGGAADFGWTAYTPL+DAIHSPG G D+W +GL V+GL Sbjct 121 LNALGFWLFLFGSSVTLAGFITPGGAADFGWTAYTPLSDAIHSPGVGSDMWFLGLTVSGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILGAVNM+TTV+C+RAPGMTMFRMPIFTWNI+VTS+LIL+ FPLLTAAL G DR Sbjct 181 GTILGAVNMVTTVICLRAPGMTMFRMPIFTWNILVTSVLILLVFPLLTAALLGAEVDRQF 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GA+++D +NGG +LWQH+FWFFGHPEVYIIALPFFGIVSEIFPVFSRKP+FGY+ LVYAT Sbjct 241 GANLFDPSNGGAILWQHMFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPLFGYSGLVYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 L+IAALSVAVWAHHM+ TGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMW+G +TFETPML Sbjct 301 LAIAALSVAVWAHHMYVTGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWRGHMTFETPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGFMVTFL GGLTGVLLASPP+DF ++DSYFVVAHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFMVTFLFGGLTGVLLASPPIDFQLSDSYFVVAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDERLGK+HFWLTFIGFH TFLVQHWLG EGMPRRYADYLP+DGF LN++ST+G Sbjct 421 MTGRLLDERLGKVHFWLTFIGFHLTFLVQHWLGAEGMPRRYADYLPSDGFTTLNIISTVG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WNVF+S+RYGEVVTVDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGVSTLPFLWNVFRSYRYGEVVTVDDPWGFGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRHHDE 566 PAFELHYPHMVER+RAEAHVG H+E Sbjct 541 PAFELHYPHMVERMRAEAHVGSFHEE 566 >gi|108800404|ref|YP_640601.1| cytochrome-c oxidase [Mycobacterium sp. MCS] gi|119869533|ref|YP_939485.1| cytochrome-c oxidase [Mycobacterium sp. KMS] gi|108770823|gb|ABG09545.1| Cytochrome-c oxidase [Mycobacterium sp. MCS] gi|119695622|gb|ABL92695.1| Cytochrome-c oxidase [Mycobacterium sp. KMS] Length=582 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/563 (88%), Positives = 528/563 (94%), Gaps = 0/563 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +T E+ L A RP+P R GPKG+L+YK+ITTTDHK+IGIMYCVAC +FF +GGL+AL Sbjct 1 MTTESVVQPTLTARRPFPERLGPKGNLIYKVITTTDHKLIGIMYCVACFAFFLVGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 MRTELA PGLQFLSNEQ+NQLFTMHGT MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FMRTELAVPGLQFLSNEQYNQLFTMHGTAMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLFVFGA I AGFITP GAADFGWTAYTPL+DA+HSPG GGDLWI GL V GL Sbjct 121 LNALSFWLFVFGALIALAGFITPSGAADFGWTAYTPLSDAVHSPGPGGDLWIFGLGVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILG VNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+ FPLLTAALF LAADRHL Sbjct 181 GTILGGVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLIFPLLTAALFALAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGVLLWQHLFWFFGHPEVY+IALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHIYDPANGGVLLWQHLFWFFGHPEVYVIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 ++IAALSVAVWAHHMFATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMW+GQLTF+TPML Sbjct 301 IAIAALSVAVWAHHMFATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWRGQLTFQTPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF++TFLLGGL+GVLLASPPLDFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFLLTFLLGGLSGVLLASPPLDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDE+LGKLHFWLTFIGFHTTFLVQHW+GDEGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDEKLGKLHFWLTFIGFHTTFLVQHWVGDEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WN+F+SWRYGE V VDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGISTLPFLWNIFRSWRYGEPVVVDDPWGHGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRH 563 PAFELHYPHMVER+RAEAH+GRH Sbjct 541 PAFELHYPHMVERMRAEAHIGRH 563 >gi|333991411|ref|YP_004524025.1| cytochrome C oxidase polypeptide I CtaD [Mycobacterium sp. JDM601] gi|333487379|gb|AEF36771.1| cytochrome C oxidase polypeptide I CtaD [Mycobacterium sp. JDM601] Length=544 Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/533 (89%), Positives = 506/533 (95%), Gaps = 0/533 (0%) Query 31 LITTTDHKMIGIMYCVACISFFFIGGLLALLMRTELAAPGLQFLSNEQFNQLFTMHGTIM 90 ++TTTDHK+IGIMYCVAC+ FFFIGGLLALLMRTEL APGLQFLSNEQFNQLFTMHGTIM Sbjct 1 MVTTTDHKLIGIMYCVACMVFFFIGGLLALLMRTELVAPGLQFLSNEQFNQLFTMHGTIM 60 Query 91 LLFYATPIVFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATIGAAGFITPGGAADFG 150 LLFYATPIVFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATI AGFITPGGAADFG Sbjct 61 LLFYATPIVFGFANLVLPLQIGAPDVAFPRLNAFSFWLFVFGATIALAGFITPGGAADFG 120 Query 151 WTAYTPLTDAIHSPGAGGDLWIMGLIVAGLGTILGAVNMITTVVCMRAPGMTMFRMPIFT 210 WT YTPL++A+HSPGAG DLWIMGL VAGLGTILG VNMITTV CMRAPGMTMFRMPIFT Sbjct 121 WTGYTPLSNAVHSPGAGADLWIMGLAVAGLGTILGGVNMITTVACMRAPGMTMFRMPIFT 180 Query 211 WNIMVTSILILIAFPLLTAALFGLAADRHLGAHIYDAANGGVLLWQHLFWFFGHPEVYII 270 WNI+VTSI++LI FPLLTAAL GLA DRHLG HIYD+ANGG LLWQHLFWFFGHPEVYII Sbjct 181 WNILVTSIMVLIVFPLLTAALLGLAVDRHLGGHIYDSANGGELLWQHLFWFFGHPEVYII 240 Query 271 ALPFFGIVSEIFPVFSRKPIFGYTTLVYATLSIAALSVAVWAHHMFATGAVLLPFFSFMT 330 ALPFFGIVSE+ PVF+RKPIFGY TLVYAT+SIA LS AVWAHHM+ATGAVLLPFF+ +T Sbjct 241 ALPFFGIVSEVIPVFARKPIFGYVTLVYATMSIAGLSTAVWAHHMYATGAVLLPFFALLT 300 Query 331 YLIAVPTGIKFFNWIGTMWKGQLTFETPMLFSVGFMVTFLLGGLTGVLLASPPLDFHVTD 390 +IA+PTG+KFFNWIGTMW+GQ+TFETPMLFS+GF+VTFL GGLTGV+LASPP+DFHV+D Sbjct 301 LMIAIPTGLKFFNWIGTMWRGQMTFETPMLFSLGFIVTFLAGGLTGVMLASPPIDFHVSD 360 Query 391 SYFVVAHFHYVLFGTIVFATFAGIYFWFPKMTGRLLDERLGKLHFWLTFIGFHTTFLVQH 450 SYF++AHFHYVLFGTIVFATFAGIYFWFPKMTGRLLDERLG+LHFWLTFIGFHTTFL+QH Sbjct 361 SYFLIAHFHYVLFGTIVFATFAGIYFWFPKMTGRLLDERLGRLHFWLTFIGFHTTFLIQH 420 Query 451 WLGDEGMPRRYADYLPTDGFQGLNVVSTIGAFILGASMFPFVWNVFKSWRYGEVVTVDDP 510 WLG+ GMPRRYADYLPTDGFQ N+VST+GAFILGASM F WNVFKSWRYGEVVTVDDP Sbjct 421 WLGNMGMPRRYADYLPTDGFQPFNIVSTVGAFILGASMLAFTWNVFKSWRYGEVVTVDDP 480 Query 511 WGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMVERLRAEAHVGRH 563 WGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHM++RLRAEAHVGRH Sbjct 481 WGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMIDRLRAEAHVGRH 533 >gi|126436027|ref|YP_001071718.1| cytochrome-c oxidase [Mycobacterium sp. JLS] gi|126235827|gb|ABN99227.1| Cytochrome-c oxidase [Mycobacterium sp. JLS] Length=582 Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/563 (87%), Positives = 527/563 (94%), Gaps = 0/563 (0%) Query 1 LTAEAPPLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLAL 60 +T E+ L RP+P R GPKG+L+YKLITTTDHK+IGIMYCVAC +FF +GGL+AL Sbjct 1 MTTESVVQPTLTVRRPFPERLGPKGNLIYKLITTTDHKLIGIMYCVACFAFFLVGGLMAL 60 Query 61 LMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 +RTELA PGLQFLSNEQ+NQLFTMHGT MLLFYATPIVFGFANLVLPLQIGAPDVAFPR Sbjct 61 FIRTELAVPGLQFLSNEQYNQLFTMHGTAMLLFYATPIVFGFANLVLPLQIGAPDVAFPR 120 Query 121 LNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGL 180 LNA SFWLFVFGA I AGFITP GAADFGWTAYTPL+DA+HSPG GGDLWI GL V GL Sbjct 121 LNALSFWLFVFGALIALAGFITPSGAADFGWTAYTPLSDAVHSPGPGGDLWIFGLGVGGL 180 Query 181 GTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHL 240 GTILG VNMITTVVCMRAPGMTMFRMPIFTWNI+VTSIL+L+ FPLLTAALF LAADRHL Sbjct 181 GTILGGVNMITTVVCMRAPGMTMFRMPIFTWNILVTSILVLLIFPLLTAALFALAADRHL 240 Query 241 GAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYAT 300 GAHIYD ANGGVLLWQHLFWFFGHPEVY+IALPFFGIVSEIFPVFSRKPIFGYTTL+YAT Sbjct 241 GAHIYDPANGGVLLWQHLFWFFGHPEVYVIALPFFGIVSEIFPVFSRKPIFGYTTLIYAT 300 Query 301 LSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPML 360 ++IAALSVAVWAHHMFATGAVLLPFFSFMT+LIAVPTGIKFFNWIGTMW+GQLTF+TPML Sbjct 301 IAIAALSVAVWAHHMFATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWRGQLTFQTPML 360 Query 361 FSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK 420 FSVGF++TFLLGGL+GVLLASPPLDFHVTDSYFV+AHFHYVLFGTIVFAT+AGIYFWFPK Sbjct 361 FSVGFLLTFLLGGLSGVLLASPPLDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPK 420 Query 421 MTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIG 480 MTGRLLDE+LGKLHFWLTFIGFHTTFLVQHW+GDEGMPRRYADYLP+DGF LN+VSTIG Sbjct 421 MTGRLLDEKLGKLHFWLTFIGFHTTFLVQHWVGDEGMPRRYADYLPSDGFTTLNIVSTIG 480 Query 481 AFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSER 540 AFILG S PF+WN+F+SWRYGE V VDDPWG+GNSLEWATSCPPPRHNFTELPRIRSER Sbjct 481 AFILGISTLPFLWNIFRSWRYGEPVVVDDPWGHGNSLEWATSCPPPRHNFTELPRIRSER 540 Query 541 PAFELHYPHMVERLRAEAHVGRH 563 PAFELHYPHMVER+RAEAH+GRH Sbjct 541 PAFELHYPHMVERMRAEAHIGRH 563 >gi|312137832|ref|YP_004005168.1| cytochrome c oxidase subunit i [Rhodococcus equi 103S] gi|325676068|ref|ZP_08155750.1| cytochrome c oxidase, subunit I [Rhodococcus equi ATCC 33707] gi|311887171|emb|CBH46480.1| cytochrome c oxidase subunit I [Rhodococcus equi 103S] gi|325553108|gb|EGD22788.1| cytochrome c oxidase, subunit I [Rhodococcus equi ATCC 33707] Length=599 Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/552 (83%), Positives = 509/552 (93%), Gaps = 0/552 (0%) Query 10 ELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLALLMRTELAAP 69 E A+RPYPAR KGSL+Y++ITTTD K++GIMY + +FF GGLLALLMR ELA P Sbjct 7 EPVAVRPYPARFARKGSLIYRVITTTDPKVLGIMYLITSFAFFMFGGLLALLMRAELAVP 66 Query 70 GLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPRLNAFSFWLF 129 G+QFLSNEQ+NQLFTMHGTIMLL YATPIVFGFAN +LPLQIGAPDVAFPRLNAFS+W + Sbjct 67 GMQFLSNEQYNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFPRLNAFSYWAY 126 Query 130 VFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGLGTILGAVNM 189 +FGA I +AGFITPGGAADFGWTAYTPL+D +HSPG G +LWIMGL ++GLGTILG VNM Sbjct 127 LFGALIASAGFITPGGAADFGWTAYTPLSDVLHSPGMGANLWIMGLALSGLGTILGGVNM 186 Query 190 ITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHLGAHIYDAAN 249 ITTV+C+RAPGMTMFRMPIFTWNI +TSILIL+AFP+LTA L GL ADR +GA++YD A Sbjct 187 ITTVICLRAPGMTMFRMPIFTWNIFITSILILVAFPILTAGLMGLFADRVVGANVYDPAT 246 Query 250 GGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATLSIAALSVA 309 GGVLLWQHLFWFFGHPEVYI+ALPFFGIVSEIFPVFSRKPIFGYT LVYAT++I+ALSVA Sbjct 247 GGVLLWQHLFWFFGHPEVYIVALPFFGIVSEIFPVFSRKPIFGYTGLVYATIAISALSVA 306 Query 310 VWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPMLFSVGFMVTF 369 VWAHHM+ATGAVLLPFFSFMT+LIAVPTG+KFFNWIGTMWKGQLTFE PMLF+VGF+VTF Sbjct 307 VWAHHMYATGAVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGQLTFEAPMLFAVGFLVTF 366 Query 370 LLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKMTGRLLDER 429 L GGL+GV+LASPPLD+HVTDSYFVVAHFHYVLFGTIVFAT+AGIYFWFPKMTGR LDER Sbjct 367 LFGGLSGVILASPPLDWHVTDSYFVVAHFHYVLFGTIVFATYAGIYFWFPKMTGRFLDER 426 Query 430 LGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIGAFILGASMF 489 LGK HFWLTFIGFH+TFLVQHWLG EGMPRRYADYLP+DGF LN VST+G+FILGAS Sbjct 427 LGKWHFWLTFIGFHSTFLVQHWLGAEGMPRRYADYLPSDGFTVLNSVSTVGSFILGASTL 486 Query 490 PFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPH 549 PF+WNVFKS+RYG VVTVDDPWGYGNSLEWAT+CPPPRHNFTELPRIRSERPAFELHYPH Sbjct 487 PFLWNVFKSFRYGTVVTVDDPWGYGNSLEWATTCPPPRHNFTELPRIRSERPAFELHYPH 546 Query 550 MVERLRAEAHVG 561 M+ER+RAEAH+G Sbjct 547 MIERMRAEAHIG 558 >gi|317506948|ref|ZP_07964718.1| cytochrome c oxidase [Segniliparus rugosus ATCC BAA-974] gi|316254756|gb|EFV14056.1| cytochrome c oxidase [Segniliparus rugosus ATCC BAA-974] Length=575 Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/574 (80%), Positives = 510/574 (89%), Gaps = 1/574 (0%) Query 1 LTAEAP-PLGELEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLA 59 +TA AP P E+ A RP+PAR G KGS +YK++TTTDHK++G MY V CI FF GGL+A Sbjct 1 MTAIAPLPDTEVAATRPFPARRGLKGSYIYKMVTTTDHKVLGNMYIVTCIGFFLAGGLMA 60 Query 60 LLMRTELAAPGLQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFP 119 LLMR ELA PGLQFLS EQFNQLFTMHGT MLL YATPIVFGFAN+VLPLQIGAPDVAFP Sbjct 61 LLMRAELAQPGLQFLSAEQFNQLFTMHGTAMLLLYATPIVFGFANVVLPLQIGAPDVAFP 120 Query 120 RLNAFSFWLFVFGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAG 179 RLNA S+WLF+FG I +GF+TPGGAAD GWT YT L+ +SPG G DLWI GL V G Sbjct 121 RLNALSYWLFLFGGLIALSGFLTPGGAADAGWTMYTNLSSVKYSPGVGTDLWITGLAVGG 180 Query 180 LGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRH 239 LGTILGAVNM+TTV+C+RAPGMTMFRMPIFTWNI+VTS+L+L+AFP+LTA L GLA DRH Sbjct 181 LGTILGAVNMVTTVICLRAPGMTMFRMPIFTWNILVTSVLVLLAFPILTAGLMGLAVDRH 240 Query 240 LGAHIYDAANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYA 299 GAHI+DA+NGGV+LWQHLFWFFGHPEVYI+ALPFFG+VSEIFPVFSRKPIFGY TL+YA Sbjct 241 FGAHIFDASNGGVILWQHLFWFFGHPEVYILALPFFGVVSEIFPVFSRKPIFGYNTLIYA 300 Query 300 TLSIAALSVAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPM 359 TLSIAALSVAVWAHHM+ATGAVLLPFFSFMT+LIA+PTGIKF NWIGTMWKGQLTFETPM Sbjct 301 TLSIAALSVAVWAHHMYATGAVLLPFFSFMTFLIAIPTGIKFINWIGTMWKGQLTFETPM 360 Query 360 LFSVGFMVTFLLGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFP 419 LFS GF+VTFL GGLTGVLLA+PPLD HV+DSYFV+AHFHYVLFGTIVFAT+AG+YFWFP Sbjct 361 LFSCGFLVTFLFGGLTGVLLAAPPLDLHVSDSYFVIAHFHYVLFGTIVFATYAGVYFWFP 420 Query 420 KMTGRLLDERLGKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTI 479 KMTGR++DERLGKLHFWLTFIGFHTTFLVQHWLGD GM RRYADYLP+DGF LN+VST+ Sbjct 421 KMTGRMMDERLGKLHFWLTFIGFHTTFLVQHWLGDMGMARRYADYLPSDGFTTLNMVSTV 480 Query 480 GAFILGASMFPFVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSE 539 GAFILGAS PF+WN F+S R+GEV TVDDPWGYG+SLEWATSCPPPRHNF E+PRIRSE Sbjct 481 GAFILGASTLPFIWNAFRSARFGEVATVDDPWGYGSSLEWATSCPPPRHNFLEIPRIRSE 540 Query 540 RPAFELHYPHMVERLRAEAHVGRHHDEPAMVTSS 573 RPAFELHYPHM ER+RAEAH GR + +V S Sbjct 541 RPAFELHYPHMSERMRAEAHAGRAGKKHELVDGS 574 >gi|54023161|ref|YP_117403.1| putative cytochrome c oxidase subunit I [Nocardia farcinica IFM 10152] gi|62900079|sp|Q5Z0K2.1|COX1B_NOCFA RecName: Full=Probable cytochrome c oxidase subunit 1-beta; AltName: Full=Cytochrome aa3 subunit 1-beta; AltName: Full=Cytochrome c oxidase polypeptide I-beta gi|54014669|dbj|BAD56039.1| putative cytochrome c oxidase subunit I [Nocardia farcinica IFM 10152] Length=588 Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/553 (83%), Positives = 507/553 (92%), Gaps = 0/553 (0%) Query 11 LEAIRPYPARTGPKGSLVYKLITTTDHKMIGIMYCVACISFFFIGGLLALLMRTELAAPG 70 L A RPYPAR GPKGS + K++TTTD K +G++Y V+ FF IGGLLALLMR ELA PG Sbjct 12 LPATRPYPARHGPKGSYLRKMVTTTDPKDLGVLYLVSATGFFLIGGLLALLMRGELARPG 71 Query 71 LQFLSNEQFNQLFTMHGTIMLLFYATPIVFGFANLVLPLQIGAPDVAFPRLNAFSFWLFV 130 LQFLS EQ+NQLFTMHGTIMLLFYATP+VFGFAN VLPLQIGAPDVAFPRLNAFS+WL++ Sbjct 72 LQFLSAEQYNQLFTMHGTIMLLFYATPVVFGFANAVLPLQIGAPDVAFPRLNAFSYWLYL 131 Query 131 FGATIGAAGFITPGGAADFGWTAYTPLTDAIHSPGAGGDLWIMGLIVAGLGTILGAVNMI 190 FGAT+ AGF+TPGGAADFGWTAYTPL+ + HSPG G DLWI+GL V+GLGTILGAVNMI Sbjct 132 FGATMATAGFLTPGGAADFGWTAYTPLSLSEHSPGVGADLWILGLAVSGLGTILGAVNMI 191 Query 191 TTVVCMRAPGMTMFRMPIFTWNIMVTSILILIAFPLLTAALFGLAADRHLGAHIYDAANG 250 TTVVC+RAPGMTMFRMPIFTWNI++TSIL+L+AFP+LTAAL LA DRHLG HIYD ANG Sbjct 192 TTVVCLRAPGMTMFRMPIFTWNILITSILVLLAFPILTAALMALAYDRHLGGHIYDPANG 251 Query 251 GVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLVYATLSIAALSVAV 310 G +L+QHLFWFFGHPEVYIIALPFFGI+SE+ PVFSRKPIFGYT LVYATL+IAALS+AV Sbjct 252 GAILYQHLFWFFGHPEVYIIALPFFGIISEVIPVFSRKPIFGYTALVYATLAIAALSMAV 311 Query 311 WAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWKGQLTFETPMLFSVGFMVTFL 370 WAHHM+ATGAVLLPFFS MT+LIAVPTG+KFFNWIGTMWKGQ+TFETPMLF++GF+VTFL Sbjct 312 WAHHMYATGAVLLPFFSMMTFLIAVPTGVKFFNWIGTMWKGQITFETPMLFAIGFIVTFL 371 Query 371 LGGLTGVLLASPPLDFHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKMTGRLLDERL 430 LGGL+GV+LASPPLD+HVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPK+TGR +DERL Sbjct 372 LGGLSGVILASPPLDWHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKLTGRFMDERL 431 Query 431 GKLHFWLTFIGFHTTFLVQHWLGDEGMPRRYADYLPTDGFQGLNVVSTIGAFILGASMFP 490 G+LHFW TF+GFH TFLVQHWLG+EGMPRRYADYLP+DGF GLN VSTIG+F+LG SM Sbjct 432 GRLHFWTTFLGFHLTFLVQHWLGNEGMPRRYADYLPSDGFTGLNTVSTIGSFLLGISMVT 491 Query 491 FVWNVFKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHM 550 FVWN FKS+RYGEVVTVDDPWG GNSLEWAT+CPPPRHNF ELPRIRSERPAFELHYPHM Sbjct 492 FVWNGFKSFRYGEVVTVDDPWGAGNSLEWATTCPPPRHNFYELPRIRSERPAFELHYPHM 551 Query 551 VERLRAEAHVGRH 563 ER+RAEAH GR Sbjct 552 AERMRAEAHAGRR 564 Lambda K H 0.330 0.144 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1288955502984 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40