BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3047c

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610184|ref|NP_217563.1|  hypothetical protein Rv3047c [Mycob...   191    4e-47
gi|289746855|ref|ZP_06506233.1|  conserved hypothetical protein [...   189    1e-46
gi|340628039|ref|YP_004746491.1|  hypothetical protein MCAN_30721...   182    1e-44
gi|167378432|ref|XP_001734798.1|  NMDA receptor-regulated protein...  37.0    0.95 
gi|67465095|ref|XP_648732.1|  hypothetical protein [Entamoeba his...  37.0    0.95 


>gi|15610184|ref|NP_217563.1| hypothetical protein Rv3047c [Mycobacterium tuberculosis H37Rv]
 gi|15842612|ref|NP_337649.1| hypothetical protein MT3132 [Mycobacterium tuberculosis CDC1551]
 gi|31794225|ref|NP_856718.1| hypothetical protein Mb3073c [Mycobacterium bovis AF2122/97]
 52 more sequence titles
 Length=94

 Score =  191 bits (484),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  1   MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV  60
           MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV
Sbjct  1   MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV  60

Query  61  PRCIPLAARLAPGTIGCPSFWNPIATGGASRQAL  94
           PRCIPLAARLAPGTIGCPSFWNPIATGGASRQAL
Sbjct  61  PRCIPLAARLAPGTIGCPSFWNPIATGGASRQAL  94


>gi|289746855|ref|ZP_06506233.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289759172|ref|ZP_06518550.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294993449|ref|ZP_06799140.1| hypothetical protein Mtub2_02817 [Mycobacterium tuberculosis 
210]
 gi|289687383|gb|EFD54871.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289714736|gb|EFD78748.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326902730|gb|EGE49663.1| hypothetical protein TBPG_00580 [Mycobacterium tuberculosis W-148]
Length=94

 Score =  189 bits (479),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 93/94 (99%), Positives = 93/94 (99%), Gaps = 0/94 (0%)

Query  1   MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV  60
           MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALV RRLLPRV
Sbjct  1   MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVARRLLPRV  60

Query  61  PRCIPLAARLAPGTIGCPSFWNPIATGGASRQAL  94
           PRCIPLAARLAPGTIGCPSFWNPIATGGASRQAL
Sbjct  61  PRCIPLAARLAPGTIGCPSFWNPIATGGASRQAL  94


>gi|340628039|ref|YP_004746491.1| hypothetical protein MCAN_30721 [Mycobacterium canettii CIPT 
140010059]
 gi|340006229|emb|CCC45403.1| hypothetical protein MCAN_30721 [Mycobacterium canettii CIPT 
140010059]
Length=94

 Score =  182 bits (463),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 91/93 (98%), Positives = 91/93 (98%), Gaps = 0/93 (0%)

Query  1   MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV  60
           MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV
Sbjct  1   MGGPFDADAEAHFDEVAEAFAKLTNVDRDVGVDLEKELCMTVEADDRSDALVTRRLLPRV  60

Query  61  PRCIPLAARLAPGTIGCPSFWNPIATGGASRQA  93
           PRCIPLAARLAPGTIGCPS WNPIATG ASRQA
Sbjct  61  PRCIPLAARLAPGTIGCPSCWNPIATGRASRQA  93


>gi|167378432|ref|XP_001734798.1| NMDA receptor-regulated protein [Entamoeba dispar SAW760]
 gi|165903520|gb|EDR29028.1| NMDA receptor-regulated protein, putative [Entamoeba dispar SAW760]
Length=601

 Score = 37.0 bits (84),  Expect = 0.95, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (62%), Gaps = 2/49 (4%)

Query  10   EAHFDEVAEAFAKLTNVDRDVGVDLEKEL-CMTVEADDRSDALVTRRLL  57
            E H++E A+AF +L ++DR     +++EL C+ V+  D   A  TR LL
Sbjct  120  EKHYEEAAKAFKRLVSLDR-TNFGIQRELYCLQVQNGDYKGAFETRSLL  167


>gi|67465095|ref|XP_648732.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56464986|gb|EAL43349.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length=601

 Score = 37.0 bits (84),  Expect = 0.95, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (62%), Gaps = 2/49 (4%)

Query  10   EAHFDEVAEAFAKLTNVDRDVGVDLEKEL-CMTVEADDRSDALVTRRLL  57
            E H++E A+AF +L ++DR     +++EL C+ V+  D   A  TR LL
Sbjct  120  EKHYEEAAKAFKRLVSLDR-TNFGIQRELYCLQVQNGDYKGAFETRSLL  167



Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127354591080


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40