BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3052c
Length=150
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610189|ref|NP_217568.1| ribonucleotide reductase stimulator... 313 4e-84
gi|254820780|ref|ZP_05225781.1| ribonucleotide reductase stimula... 276 7e-73
gi|41409199|ref|NP_962035.1| ribonucleotide reductase stimulator... 276 7e-73
gi|240169543|ref|ZP_04748202.1| ribonucleotide reductase stimula... 273 5e-72
gi|342858097|ref|ZP_08714752.1| ribonucleotide reductase stimula... 273 5e-72
gi|183981655|ref|YP_001849946.1| NrdI protein [Mycobacterium mar... 270 7e-71
gi|118617478|ref|YP_905810.1| ribonucleotide reductase stimulato... 269 1e-70
gi|296171152|ref|ZP_06852600.1| ribonucleotide-diphosphate reduc... 252 1e-65
gi|333991428|ref|YP_004524042.1| NrdI protein [Mycobacterium sp.... 244 2e-63
gi|120403035|ref|YP_952864.1| ribonucleotide reductase stimulato... 238 2e-61
gi|15827933|ref|NP_302196.1| ribonucleotide reductase stimulator... 236 9e-61
gi|108798784|ref|YP_638981.1| ribonucleotide reductase stimulato... 235 2e-60
gi|145224885|ref|YP_001135563.1| ribonucleotide reductase stimul... 227 5e-58
gi|226365902|ref|YP_002783685.1| ribonucleotide reductase stimul... 206 8e-52
gi|169630495|ref|YP_001704144.1| protein NrdI [Mycobacterium abs... 202 1e-50
gi|226305838|ref|YP_002765798.1| NrdI protein [Rhodococcus eryth... 197 4e-49
gi|111023401|ref|YP_706373.1| ribonucleotide reductase stimulato... 193 6e-48
gi|296140662|ref|YP_003647905.1| NrdI protein [Tsukamurella paur... 192 1e-47
gi|312140541|ref|YP_004007877.1| flavodoxin like protein nrdi [R... 192 1e-47
gi|343926906|ref|ZP_08766399.1| protein NrdI [Gordonia alkanivor... 191 3e-47
gi|54026279|ref|YP_120521.1| ribonucleotide reductase stimulator... 190 7e-47
gi|333921315|ref|YP_004494896.1| protein nrdI [Amycolicicoccus s... 187 4e-46
gi|262203179|ref|YP_003274387.1| NrdI protein [Gordonia bronchia... 184 3e-45
gi|227112966|ref|ZP_03826622.1| ribonucleotide reductase stimula... 181 3e-44
gi|261820462|ref|YP_003258568.1| ribonucleotide reductase stimul... 181 3e-44
gi|161502144|ref|YP_001569256.1| ribonucleotide reductase stimul... 181 3e-44
gi|91212035|ref|YP_542021.1| ribonucleotide reductase stimulator... 181 5e-44
gi|260599069|ref|YP_003211640.1| ribonucleotide reductase stimul... 180 8e-44
gi|188533086|ref|YP_001906883.1| protein NrdI [Erwinia tasmanien... 179 1e-43
gi|205353756|ref|YP_002227557.1| ribonucleotide reductase stimul... 179 1e-43
gi|237729633|ref|ZP_04560114.1| ribonucleotide reductase stimula... 179 2e-43
gi|301019061|ref|ZP_07183272.1| NrdI protein [Escherichia coli M... 179 2e-43
gi|82778046|ref|YP_404395.1| ribonucleotide reductase stimulator... 178 2e-43
gi|82545245|ref|YP_409192.1| ribonucleotide reductase stimulator... 178 2e-43
gi|15803194|ref|NP_289226.1| ribonucleotide reductase stimulator... 178 2e-43
gi|146312795|ref|YP_001177869.1| ribonucleotide reductase stimul... 178 3e-43
gi|303325064|pdb|3N39|C Chain C, Ribonucleotide Reductase Dimang... 178 3e-43
gi|317049230|ref|YP_004116878.1| NrdI protein [Pantoea sp. At-9b... 178 3e-43
gi|200388415|ref|ZP_03215027.1| NrdI protein [Salmonella enteric... 178 3e-43
gi|269794347|ref|YP_003313802.1| ribonucleoside-diphosphate redu... 177 3e-43
gi|168233767|ref|ZP_02658825.1| NrdI protein [Salmonella enteric... 177 3e-43
gi|218701169|ref|YP_002408798.1| ribonucleotide reductase stimul... 177 3e-43
gi|326381479|ref|ZP_08203173.1| ribonucleotide reductase stimula... 177 4e-43
gi|161615701|ref|YP_001589666.1| ribonucleotide reductase stimul... 177 4e-43
gi|331664231|ref|ZP_08365137.1| NrdI protein [Escherichia coli T... 177 4e-43
gi|50122258|ref|YP_051425.1| ribonucleotide reductase stimulator... 177 4e-43
gi|16761588|ref|NP_457205.1| ribonucleotide reductase stimulator... 177 4e-43
gi|322831491|ref|YP_004211518.1| NrdI protein [Rahnella sp. Y960... 177 4e-43
gi|16766117|ref|NP_461732.1| ribonucleotide reductase stimulator... 177 5e-43
gi|323966926|gb|EGB62354.1| NrdI Flavodoxin [Escherichia coli M863] 177 5e-43
>gi|15610189|ref|NP_217568.1| ribonucleotide reductase stimulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15842618|ref|NP_337655.1| ribonucleotide reductase stimulatory protein [Mycobacterium tuberculosis
CDC1551]
gi|31794230|ref|NP_856723.1| ribonucleotide reductase stimulatory protein [Mycobacterium bovis
AF2122/97]
85 more sequence titles
Length=150
Score = 313 bits (803), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 150/150 (100%), Positives = 150/150 (100%), Gaps = 0/150 (0%)
Query 1 MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL 60
MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL
Sbjct 1 MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL 60
Query 61 DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM 120
DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM
Sbjct 61 DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM 120
Query 121 GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
Sbjct 121 GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
>gi|254820780|ref|ZP_05225781.1| ribonucleotide reductase stimulatory protein [Mycobacterium intracellulare
ATCC 13950]
Length=150
Score = 276 bits (706), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 128/150 (86%), Positives = 139/150 (93%), Gaps = 0/150 (0%)
Query 1 MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL 60
MD GR+LVYFSSVSENTHRFV+KLGIPATRIPLHGRIEVD+PYVL+LPTYGGGRA P L
Sbjct 1 MDTTGRNLVYFSSVSENTHRFVEKLGIPATRIPLHGRIEVDQPYVLVLPTYGGGRATPDL 60
Query 61 DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM 120
+AGGYVPKQVIAFLNN+HNR+ +RGVIAAGN NFGAEF YAGDV+SRKC VPYLYRFELM
Sbjct 61 NAGGYVPKQVIAFLNNEHNRSLIRGVIAAGNNNFGAEFAYAGDVISRKCGVPYLYRFELM 120
Query 121 GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
GT+DDV AVR GLA+FWKEQTC QPSLQSL
Sbjct 121 GTQDDVDAVRAGLADFWKEQTCQQPSLQSL 150
>gi|41409199|ref|NP_962035.1| ribonucleotide reductase stimulatory protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|118465853|ref|YP_883082.1| ribonucleotide reductase stimulatory protein [Mycobacterium avium
104]
gi|254776339|ref|ZP_05217855.1| ribonucleotide reductase stimulatory protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|81413430|sp|Q73VB3.1|NRDI_MYCPA RecName: Full=Protein nrdI
gi|166233920|sp|A0QJJ4.1|NRDI_MYCA1 RecName: Full=Protein nrdI
gi|41398019|gb|AAS05649.1| NrdI [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167140|gb|ABK68037.1| NrdI protein [Mycobacterium avium 104]
gi|336459254|gb|EGO38199.1| ribonucleoside-diphosphate reductase 2, operon protein nrdI [Mycobacterium
avium subsp. paratuberculosis S397]
Length=150
Score = 276 bits (706), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 130/150 (87%), Positives = 138/150 (92%), Gaps = 0/150 (0%)
Query 1 MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL 60
MD GR+LVYFSSVSENTHRFVQKLGIPA RIPLHGRIEVD PYVL+LPTYGGGRA P L
Sbjct 1 MDSTGRNLVYFSSVSENTHRFVQKLGIPAIRIPLHGRIEVDHPYVLLLPTYGGGRATPDL 60
Query 61 DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM 120
+AGGYVPKQVIAFLNN+HNR+ +RGVIAAGN NFGAEF YAG+VVSRKC VPYLYRFELM
Sbjct 61 NAGGYVPKQVIAFLNNEHNRSLIRGVIAAGNNNFGAEFAYAGNVVSRKCGVPYLYRFELM 120
Query 121 GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
GT+DDV AVR GLAEFWKEQTCHQPSLQSL
Sbjct 121 GTQDDVDAVRAGLAEFWKEQTCHQPSLQSL 150
>gi|240169543|ref|ZP_04748202.1| ribonucleotide reductase stimulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=150
Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/150 (88%), Positives = 137/150 (92%), Gaps = 0/150 (0%)
Query 1 MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL 60
MDI +LVYFSSVSENTHRFVQKLG+PATRIPLHG IEVDEPYVLILPTYGGGR P L
Sbjct 1 MDIRPCNLVYFSSVSENTHRFVQKLGLPATRIPLHGSIEVDEPYVLILPTYGGGRVTPKL 60
Query 61 DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM 120
+AGGYVPKQVIAFLNN+ NRA LRGVIAAGNTNFG EF YAGDVV+RKC VPYLYRFELM
Sbjct 61 NAGGYVPKQVIAFLNNERNRALLRGVIAAGNTNFGPEFGYAGDVVARKCDVPYLYRFELM 120
Query 121 GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
GTEDDVAAVR GLAEFWKEQTCHQPSLQSL
Sbjct 121 GTEDDVAAVRAGLAEFWKEQTCHQPSLQSL 150
>gi|342858097|ref|ZP_08714752.1| ribonucleotide reductase stimulatory protein [Mycobacterium colombiense
CECT 3035]
gi|342133801|gb|EGT86981.1| ribonucleotide reductase stimulatory protein [Mycobacterium colombiense
CECT 3035]
Length=150
Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 127/150 (85%), Positives = 138/150 (92%), Gaps = 0/150 (0%)
Query 1 MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL 60
MD R+LVYFSSVSENTHRFV+KLGIPATRIPLHGRIEVD+PYVL+LPTYGGGRA P L
Sbjct 1 MDSTQRNLVYFSSVSENTHRFVEKLGIPATRIPLHGRIEVDQPYVLVLPTYGGGRATPDL 60
Query 61 DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM 120
+AGGYVPKQVIAFLNN+HNR+ +RGVIAAGN NFGAEF YAG+V+SRKC VPYLYRFELM
Sbjct 61 NAGGYVPKQVIAFLNNEHNRSLIRGVIAAGNNNFGAEFAYAGNVISRKCGVPYLYRFELM 120
Query 121 GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
GT+DDV AVR GLA FWKEQTCHQPSLQSL
Sbjct 121 GTQDDVDAVRAGLANFWKEQTCHQPSLQSL 150
>gi|183981655|ref|YP_001849946.1| NrdI protein [Mycobacterium marinum M]
gi|183174981|gb|ACC40091.1| NrdI protein [Mycobacterium marinum M]
Length=153
Score = 270 bits (689), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 130/148 (88%), Positives = 137/148 (93%), Gaps = 4/148 (2%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLD----A 62
+LVYFSSVSENTHRFVQKLG+PATRIPLHGRIEVDEPYVLILPTYGGGRANP LD A
Sbjct 6 NLVYFSSVSENTHRFVQKLGLPATRIPLHGRIEVDEPYVLILPTYGGGRANPDLDLGSNA 65
Query 63 GGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGT 122
GGYVPKQVIAFLNN+HNR+ +RGVIAAGN NFGAEF YAG+VVSRKC VPYLYRFELMGT
Sbjct 66 GGYVPKQVIAFLNNEHNRSLIRGVIAAGNNNFGAEFAYAGNVVSRKCGVPYLYRFELMGT 125
Query 123 EDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
DDVAAVR GLA+FWKEQTCHQPSLQSL
Sbjct 126 ADDVAAVRAGLADFWKEQTCHQPSLQSL 153
>gi|118617478|ref|YP_905810.1| ribonucleotide reductase stimulatory protein [Mycobacterium ulcerans
Agy99]
gi|118569588|gb|ABL04339.1| NrdI protein [Mycobacterium ulcerans Agy99]
Length=153
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/148 (88%), Positives = 136/148 (92%), Gaps = 4/148 (2%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLD----A 62
+LVYFSSVSENTHRFVQKLG PATRIPLHGRIEVDEPYVLILPTYGGGRANP LD A
Sbjct 6 NLVYFSSVSENTHRFVQKLGFPATRIPLHGRIEVDEPYVLILPTYGGGRANPDLDLGSNA 65
Query 63 GGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGT 122
GGYVPKQVIAFLNN+HNR+ +RGVIAAGN NFGAEF YAG+VVSRKC VPYLYRFELMGT
Sbjct 66 GGYVPKQVIAFLNNEHNRSLIRGVIAAGNNNFGAEFAYAGNVVSRKCGVPYLYRFELMGT 125
Query 123 EDDVAAVRTGLAEFWKEQTCHQPSLQSL 150
DDVAAVR GLA+FWKEQTCHQPSLQSL
Sbjct 126 ADDVAAVRAGLADFWKEQTCHQPSLQSL 153
>gi|296171152|ref|ZP_06852600.1| ribonucleotide-diphosphate reductase subunit gamma [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894288|gb|EFG74043.1| ribonucleotide-diphosphate reductase subunit gamma [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=137
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/137 (86%), Positives = 127/137 (93%), Gaps = 0/137 (0%)
Query 14 VSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAF 73
+SENTHRFV+KLG+PATRIPLHGRIEVDEPYVLILPTYGGGRA P L+AGGYVPKQVIAF
Sbjct 1 MSENTHRFVEKLGVPATRIPLHGRIEVDEPYVLILPTYGGGRATPDLNAGGYVPKQVIAF 60
Query 74 LNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGL 133
LNN+ NR+ +RGVIAAGN NFGAEF YAG+V+SRKC VPYLYRFELMGT DDV AVR GL
Sbjct 61 LNNEQNRSLIRGVIAAGNNNFGAEFAYAGNVISRKCGVPYLYRFELMGTPDDVEAVRAGL 120
Query 134 AEFWKEQTCHQPSLQSL 150
A+FWKEQTCHQPSLQSL
Sbjct 121 ADFWKEQTCHQPSLQSL 137
>gi|333991428|ref|YP_004524042.1| NrdI protein [Mycobacterium sp. JDM601]
gi|333487396|gb|AEF36788.1| NrdI protein [Mycobacterium sp. JDM601]
Length=155
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/147 (81%), Positives = 128/147 (88%), Gaps = 4/147 (2%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLD---AG 63
SLVYFSSVSENTHRFVQKL +PA RIPLHGRIEVD PYVL+LPTYGGGR P + AG
Sbjct 8 SLVYFSSVSENTHRFVQKLQLPAIRIPLHGRIEVDHPYVLVLPTYGGGRGTPNITDDTAG 67
Query 64 GYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTE 123
GYVPKQVIAFLNN+HNR LRGVIAAGNTNFGAEFCYAGDVV+RKC VPYLYRFELMGT+
Sbjct 68 GYVPKQVIAFLNNEHNRNLLRGVIAAGNTNFGAEFCYAGDVVARKCGVPYLYRFELMGTD 127
Query 124 DDVAAVRTGLAEFWKEQTCHQP-SLQS 149
+DV AVR GLA+FWK++ CH P LQS
Sbjct 128 EDVKAVRAGLADFWKDEACHLPLQLQS 154
>gi|120403035|ref|YP_952864.1| ribonucleotide reductase stimulatory protein [Mycobacterium vanbaalenii
PYR-1]
gi|166233925|sp|A1T6Q8.1|NRDI_MYCVP RecName: Full=Protein nrdI
gi|119955853|gb|ABM12858.1| NrdI protein [Mycobacterium vanbaalenii PYR-1]
Length=152
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/150 (78%), Positives = 132/150 (88%), Gaps = 6/150 (4%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRAN-PGLDAGGY 65
+LVYFSSVSENTHRFV+KLG+PATRIP+HGRI+VDEPYVL+LPTYGGG AN P D GGY
Sbjct 3 NLVYFSSVSENTHRFVEKLGLPATRIPIHGRIQVDEPYVLVLPTYGGGHANGPDPDRGGY 62
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VPKQVIAFLN++HNR+ +RGVIAAGNTNFGAEF YAG +VSRKC VP+LYRFELMGT DD
Sbjct 63 VPKQVIAFLNDEHNRSLIRGVIAAGNTNFGAEFGYAGVIVSRKCGVPFLYRFELMGTTDD 122
Query 126 VAAVRTGLAEFW----KEQTCHQPS-LQSL 150
V AVR GL +FW K+QTCHQPS LQ+L
Sbjct 123 VFAVRQGLTDFWADARKDQTCHQPSQLQNL 152
>gi|15827933|ref|NP_302196.1| ribonucleotide reductase stimulatory protein [Mycobacterium leprae
TN]
gi|221230410|ref|YP_002503826.1| ribonucleotide reductase stimulatory protein [Mycobacterium leprae
Br4923]
gi|20178011|sp|Q9CBP9.1|NRDI_MYCLE RecName: Full=Protein nrdI
gi|254767981|sp|B8ZS49.1|NRDI_MYCLB RecName: Full=Protein nrdI
gi|13093486|emb|CAC30688.1| NrdI-family protein [Mycobacterium leprae]
gi|219933517|emb|CAR71830.1| NrdI-family protein [Mycobacterium leprae Br4923]
Length=138
Score = 236 bits (602), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 110/138 (80%), Positives = 120/138 (87%), Gaps = 0/138 (0%)
Query 3 IAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLDA 62
+ +LVYFSSVSENTHRFVQKLG+PA RIPLH RIEV +PYVL+LPTYGGGR P L A
Sbjct 1 MQAHNLVYFSSVSENTHRFVQKLGVPAMRIPLHSRIEVSDPYVLVLPTYGGGRTAPDLQA 60
Query 63 GGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGT 122
GGYVPKQVIAFLNN++NRA + GV+AAGNTNFGAEFCYAGDVV+RKC VPYLYRFELMGT
Sbjct 61 GGYVPKQVIAFLNNEYNRALICGVVAAGNTNFGAEFCYAGDVVARKCGVPYLYRFELMGT 120
Query 123 EDDVAAVRTGLAEFWKEQ 140
EDDV AVR GLA WKE
Sbjct 121 EDDVTAVRAGLANLWKEH 138
>gi|108798784|ref|YP_638981.1| ribonucleotide reductase stimulatory protein [Mycobacterium sp.
MCS]
gi|119867902|ref|YP_937854.1| ribonucleotide reductase stimulatory protein [Mycobacterium sp.
KMS]
gi|126434385|ref|YP_001070076.1| ribonucleotide reductase stimulatory protein [Mycobacterium sp.
JLS]
6 more sequence titles
Length=152
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/150 (80%), Positives = 129/150 (86%), Gaps = 6/150 (4%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGRIE----VDEPYVLILPTYGGGRAN-PGLD 61
++VYFSSVSENTHRFV+KL +PATRIP+ GRI+ V EPYVL+LPTYGGG AN P D
Sbjct 3 NIVYFSSVSENTHRFVEKLELPATRIPILGRIQDPDFVREPYVLVLPTYGGGHANGPDPD 62
Query 62 AGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMG 121
AGGYVPKQVIAFLNN+HNR+ +RGVIAAGNTNFGAEF YAGDVVSRKC VPYLYRFELMG
Sbjct 63 AGGYVPKQVIAFLNNEHNRSLIRGVIAAGNTNFGAEFGYAGDVVSRKCGVPYLYRFELMG 122
Query 122 TEDDVAAVRTGLAEFWKEQTCHQPS-LQSL 150
T DDV AVR GL FWKEQTCH PS LQSL
Sbjct 123 TTDDVLAVRAGLENFWKEQTCHPPSQLQSL 152
>gi|145224885|ref|YP_001135563.1| ribonucleotide reductase stimulatory protein [Mycobacterium gilvum
PYR-GCK]
gi|315445213|ref|YP_004078092.1| ribonucleoside-diphosphate reductase 2, operon protein nrdI [Mycobacterium
sp. Spyr1]
gi|189030486|sp|A4TDU4.1|NRDI_MYCGI RecName: Full=Protein nrdI
gi|145217371|gb|ABP46775.1| NrdI protein [Mycobacterium gilvum PYR-GCK]
gi|315263516|gb|ADU00258.1| ribonucleoside-diphosphate reductase 2, operon protein nrdI [Mycobacterium
sp. Spyr1]
Length=148
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/141 (79%), Positives = 122/141 (87%), Gaps = 1/141 (0%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRAN-PGLDAGGY 65
++VYFSSVSENTHRFVQKL +PA RIPL RI V+EPYVLILPTYGGG AN P D GGY
Sbjct 3 NIVYFSSVSENTHRFVQKLELPAIRIPLKDRIRVEEPYVLILPTYGGGHANGPDPDRGGY 62
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VPKQVIAFLN++HNR+ +RGVIAAGNTNFGAEF YAG VVSRKC VP+LYRFELMGT DD
Sbjct 63 VPKQVIAFLNDEHNRSLIRGVIAAGNTNFGAEFGYAGVVVSRKCDVPFLYRFELMGTTDD 122
Query 126 VAAVRTGLAEFWKEQTCHQPS 146
V AVR GL +FWK+Q+C QPS
Sbjct 123 VFAVRAGLQDFWKDQSCPQPS 143
>gi|226365902|ref|YP_002783685.1| ribonucleotide reductase stimulatory protein [Rhodococcus opacus
B4]
gi|254767982|sp|C1B1P5.1|NRDI_RHOOB RecName: Full=Protein nrdI
gi|226244392|dbj|BAH54740.1| NrdI protein [Rhodococcus opacus B4]
Length=152
Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/149 (70%), Positives = 114/149 (77%), Gaps = 9/149 (6%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRANPGLDAG 63
SLVYFSS SENTHRFVQKLG+PATRIPLH R EVDEPYVLILPTYGGG G D
Sbjct 3 SLVYFSSASENTHRFVQKLGVPATRIPLHDRAGTFEVDEPYVLILPTYGGGITATGRDTS 62
Query 64 GYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTE 123
YVPKQVI FLNN HNR+ +RGVIAAGNTNFG +CYAG+V+S+KC VPYLYRFELMGT
Sbjct 63 -YVPKQVIRFLNNTHNRSLIRGVIAAGNTNFGESYCYAGNVISQKCRVPYLYRFELMGTA 121
Query 124 DDVAAVRTGLAEF-----WKEQTCHQPSL 147
+DV AV GL +F W Q+ QP L
Sbjct 122 EDVVAVLDGLEQFMESEQWHRQSQTQPRL 150
>gi|169630495|ref|YP_001704144.1| protein NrdI [Mycobacterium abscessus ATCC 19977]
gi|238688781|sp|B1ME21.1|NRDI_MYCA9 RecName: Full=Protein nrdI
gi|169242462|emb|CAM63490.1| Protein NrdI [Mycobacterium abscessus]
Length=156
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/148 (69%), Positives = 112/148 (76%), Gaps = 11/148 (7%)
Query 8 LVYFSSVSENTHRFVQKLG----------IPATRIPLHGRIEVDEPYVLILPTYGGGRAN 57
LVYFSSVSENTHRFVQKL PA RIPL G IEVD PYVLI+PTYGGG
Sbjct 4 LVYFSSVSENTHRFVQKLARASEARGEGPCPAIRIPLRGDIEVDTPYVLIVPTYGGGHPV 63
Query 58 PGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRF 117
PG AGGYVPKQV+ FLNN++NR+ +RGVIAAGNTNFGAE+CYAG V+S KC VPYLYRF
Sbjct 64 PG-KAGGYVPKQVVKFLNNENNRSLIRGVIAAGNTNFGAEYCYAGKVISAKCDVPYLYRF 122
Query 118 ELMGTEDDVAAVRTGLAEFWKEQTCHQP 145
ELMGT +DV V GL EFWK+ QP
Sbjct 123 ELMGTAEDVEQVLDGLDEFWKDTPWRQP 150
>gi|226305838|ref|YP_002765798.1| NrdI protein [Rhodococcus erythropolis PR4]
gi|229493428|ref|ZP_04387217.1| protein NrdI [Rhodococcus erythropolis SK121]
gi|259511998|sp|C0ZXH4.1|NRDI_RHOE4 RecName: Full=Protein nrdI
gi|226184955|dbj|BAH33059.1| NrdI protein [Rhodococcus erythropolis PR4]
gi|229319744|gb|EEN85576.1| protein NrdI [Rhodococcus erythropolis SK121]
Length=159
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/151 (68%), Positives = 113/151 (75%), Gaps = 11/151 (7%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRANPGLDAG 63
SLVYFSSVSENTHRFVQ+LG+PATRIP+H R VDEPYVLILPTYGGG G D
Sbjct 3 SLVYFSSVSENTHRFVQRLGLPATRIPIHDRDGSFRVDEPYVLILPTYGGGVTVTGRDTS 62
Query 64 GYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTE 123
YVPK VI FLNN HNR+ +R VIAAGNTNFG FCYAG+++S+KC VP+LYRFELMGT
Sbjct 63 -YVPKPVIRFLNNPHNRSLIRAVIAAGNTNFGESFCYAGNIISQKCHVPFLYRFELMGTA 121
Query 124 DDVAAVRTGLAEFW------KEQ-TCHQPSL 147
+DV VR GL EFW KE QPSL
Sbjct 122 EDVDRVREGLGEFWNHLETEKEHGQWRQPSL 152
>gi|111023401|ref|YP_706373.1| ribonucleotide reductase stimulatory protein [Rhodococcus jostii
RHA1]
gi|123045480|sp|Q0S2M1.1|NRDI_RHOSR RecName: Full=Protein nrdI
gi|110822931|gb|ABG98215.1| NrdI protein [Rhodococcus jostii RHA1]
Length=158
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/134 (70%), Positives = 106/134 (80%), Gaps = 4/134 (2%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRANPGLDAG 63
SLVYFSS SENTHRFVQ+LG+PATRIP+H R EV EPYVLI+PTYGGG G D
Sbjct 3 SLVYFSSASENTHRFVQRLGLPATRIPIHDREGTFEVREPYVLIVPTYGGGTTAMGRDTS 62
Query 64 GYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTE 123
YVPK VI FLNN HNR+ +R VIAAGNTNFG +C+AG+++S+KC VPYLYRFELMGT
Sbjct 63 -YVPKPVIRFLNNTHNRSLIRAVIAAGNTNFGESYCFAGNIISQKCHVPYLYRFELMGTA 121
Query 124 DDVAAVRTGLAEFW 137
+DV VR GL EFW
Sbjct 122 EDVERVRAGLGEFW 135
>gi|296140662|ref|YP_003647905.1| NrdI protein [Tsukamurella paurometabola DSM 20162]
gi|296028796|gb|ADG79566.1| NrdI protein [Tsukamurella paurometabola DSM 20162]
Length=154
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/133 (69%), Positives = 107/133 (81%), Gaps = 3/133 (2%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRANPGLDAGG 64
+VYFSSVSENTHRFV+KLG+ A RIP+ I VDEP+VLI PTYGGG+ + GG
Sbjct 6 VVYFSSVSENTHRFVKKLGLRAKRIPVARAGEPITVDEPFVLITPTYGGGKQATAVSGGG 65
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
YVPKQVI FLN+ HNR+ +R VIAAGNTNFG EFCYAGDV+SRKC +PYLYRFELMGT +
Sbjct 66 YVPKQVIRFLNDAHNRSLIRAVIAAGNTNFGEEFCYAGDVISRKCKIPYLYRFELMGTAE 125
Query 125 DVAAVRTGLAEFW 137
DV VR+GL +F+
Sbjct 126 DVDRVRSGLTDFF 138
>gi|312140541|ref|YP_004007877.1| flavodoxin like protein nrdi [Rhodococcus equi 103S]
gi|325675839|ref|ZP_08155523.1| ribonucleotide-diphosphate reductase subunit gamma [Rhodococcus
equi ATCC 33707]
gi|311889880|emb|CBH49197.1| flavodoxin like protein NrdI [Rhodococcus equi 103S]
gi|325553810|gb|EGD23488.1| ribonucleotide-diphosphate reductase subunit gamma [Rhodococcus
equi ATCC 33707]
Length=152
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/143 (71%), Positives = 116/143 (82%), Gaps = 4/143 (2%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRANPGLDAG 63
SLVYFSS SENTHRFV++LG+PATRIPL R EVDEPYVLILPTYGGG + G D
Sbjct 3 SLVYFSSASENTHRFVERLGVPATRIPLRDREGTFEVDEPYVLILPTYGGGTTSTGRDTS 62
Query 64 GYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTE 123
YVPKQVI FLNN+HNR +RGVIAAGNTNFG +CYAG+V+S+KC VPYLYRFELMGT
Sbjct 63 -YVPKQVIRFLNNEHNRDLIRGVIAAGNTNFGESYCYAGNVISQKCRVPYLYRFELMGTA 121
Query 124 DDVAAVRTGLAEFWKEQTCHQPS 146
+DV AVR GLA+F + + H+PS
Sbjct 122 EDVVAVREGLAQFMESEQWHRPS 144
>gi|343926906|ref|ZP_08766399.1| protein NrdI [Gordonia alkanivorans NBRC 16433]
gi|343763266|dbj|GAA13325.1| protein NrdI [Gordonia alkanivorans NBRC 16433]
Length=154
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/135 (70%), Positives = 108/135 (80%), Gaps = 5/135 (3%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHG---RIEVDEPYVLILPTYGGGRANPGLDAGG 64
+VYFSSVSENTHRFV+KL + + RIPL G VDEPYVLI PTYGGG+A GG
Sbjct 8 IVYFSSVSENTHRFVEKLDMRSVRIPLTGAAGEFGVDEPYVLICPTYGGGKATG--QPGG 65
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
+VPKQVI FLN++HNR+ +RGVIAAGNTNFG EFCYAGD++SRKC VPYLYRFELMGT D
Sbjct 66 FVPKQVIRFLNDEHNRSLIRGVIAAGNTNFGEEFCYAGDIISRKCRVPYLYRFELMGTTD 125
Query 125 DVAAVRTGLAEFWKE 139
DV VR GLA+F +
Sbjct 126 DVDRVRAGLADFAQS 140
>gi|54026279|ref|YP_120521.1| ribonucleotide reductase stimulatory protein [Nocardia farcinica
IFM 10152]
gi|54017787|dbj|BAD59157.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=169
Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 94/143 (66%), Positives = 109/143 (77%), Gaps = 4/143 (2%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLH--GRIEVDEPYVLILPTYGGGRANPG--LDA 62
+LVYFSS SENTHRFV+KLG+PATRIPLH + V EPYVLI+PTYGGGR G
Sbjct 22 ALVYFSSASENTHRFVEKLGLPATRIPLHTADSLRVGEPYVLIVPTYGGGRHVLGGARSD 81
Query 63 GGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGT 122
+VP+QV FLN+ HNR+ LRGVIAAGNTNFG +CYAG+V+SRKC VPYLYRFELMGT
Sbjct 82 KEFVPRQVAKFLNDPHNRSLLRGVIAAGNTNFGDTYCYAGEVISRKCGVPYLYRFELMGT 141
Query 123 EDDVAAVRTGLAEFWKEQTCHQP 145
DV VR GL FW++Q +P
Sbjct 142 AQDVERVREGLGLFWQQQRQRRP 164
>gi|333921315|ref|YP_004494896.1| protein nrdI [Amycolicicoccus subflavus DQS3-9A1]
gi|333483536|gb|AEF42096.1| Protein nrdI [Amycolicicoccus subflavus DQS3-9A1]
Length=136
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/136 (67%), Positives = 108/136 (80%), Gaps = 4/136 (2%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSSVSENTHRFV+KL +PA RIP+HG+ IEV++P+VL++PTY GG+ + G G
Sbjct 2 LVYFSSVSENTHRFVRKLDLPAVRIPVHGQNGDIEVNQPFVLVVPTYAGGKDSQGRHVGA 61
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VPKQVI FLNN HNR+ +RGVIAAGNTNFG F AGD++S+KC VPYLYRFELMGT +
Sbjct 62 -VPKQVIRFLNNPHNRSLIRGVIAAGNTNFGDAFGVAGDIISKKCKVPYLYRFELMGTSE 120
Query 125 DVAAVRTGLAEFWKEQ 140
DV VR GL +FW Q
Sbjct 121 DVERVREGLEQFWHRQ 136
>gi|262203179|ref|YP_003274387.1| NrdI protein [Gordonia bronchialis DSM 43247]
gi|262086526|gb|ACY22494.1| NrdI protein [Gordonia bronchialis DSM 43247]
Length=156
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/129 (73%), Positives = 103/129 (80%), Gaps = 5/129 (3%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGRIE---VDEPYVLILPTYGGGRANPGLDAGG 64
+VYFSSVSENTHRFV+KLG A RIPL R + VDEPYVLI PTYGG +A G
Sbjct 8 IVYFSSVSENTHRFVEKLGSAAVRIPLTDRSDGFTVDEPYVLICPTYGGHKATG--KPSG 65
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
+VPKQVI FLNN HNR+ +RGVIAAGNTNFGAEFC+AGD++SRKC VPYLYRFELMGT D
Sbjct 66 FVPKQVIRFLNNTHNRSLIRGVIAAGNTNFGAEFCHAGDIISRKCEVPYLYRFELMGTVD 125
Query 125 DVAAVRTGL 133
DV VR GL
Sbjct 126 DVDRVRAGL 134
>gi|227112966|ref|ZP_03826622.1| ribonucleotide reductase stimulatory protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227329866|ref|ZP_03833890.1| ribonucleotide reductase stimulatory protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
gi|253689501|ref|YP_003018691.1| NrdI protein [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259511997|sp|C6DC61.1|NRDI_PECCP RecName: Full=Protein nrdI
gi|251756079|gb|ACT14155.1| NrdI protein [Pectobacterium carotovorum subsp. carotovorum PC1]
Length=135
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/137 (62%), Positives = 107/137 (79%), Gaps = 9/137 (6%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPL---HGRIEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENTHRF+ ++G+PA RIP+ ++VD PY+L++P+YGGG G
Sbjct 4 LVYFSSQSENTHRFISRVGLPALRIPIATEQPALKVDRPYILVVPSYGGGSTK------G 57
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN+ HNRA LRGVIAAGNTNFGA +C AGD++++KC VPYLYRFEL+GT +
Sbjct 58 AVPRQVIIFLNDPHNRAYLRGVIAAGNTNFGAAYCIAGDIIAQKCQVPYLYRFELLGTAE 117
Query 125 DVAAVRTGLAEFWKEQT 141
DVA VR G+ EFW++QT
Sbjct 118 DVANVRKGVTEFWQQQT 134
>gi|261820462|ref|YP_003258568.1| ribonucleotide reductase stimulatory protein [Pectobacterium
wasabiae WPP163]
gi|261604475|gb|ACX86961.1| NrdI protein [Pectobacterium wasabiae WPP163]
Length=135
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/137 (62%), Positives = 107/137 (79%), Gaps = 9/137 (6%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPL---HGRIEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENTHRF+ ++G+PA RIP+ ++VD PY+L++P+YGGG G
Sbjct 4 LVYFSSQSENTHRFISRVGLPALRIPIATEQPALKVDRPYILVVPSYGGGSTK------G 57
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN+ HNRA LRGVIAAGNTNFGA +C AGD++++KC VPYLYRFEL+GT +
Sbjct 58 AVPRQVIIFLNDPHNRAYLRGVIAAGNTNFGAAYCIAGDIIAQKCQVPYLYRFELLGTPE 117
Query 125 DVAAVRTGLAEFWKEQT 141
DVA VR G+ EFW++QT
Sbjct 118 DVANVRKGVTEFWQQQT 134
>gi|161502144|ref|YP_001569256.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189030487|sp|A9MG06.1|NRDI_SALAR RecName: Full=Protein nrdI
gi|160863491|gb|ABX20114.1| hypothetical protein SARI_00167 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:--]
Length=136
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/137 (63%), Positives = 110/137 (81%), Gaps = 8/137 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I VDEPY+L++P+YGGG G
Sbjct 3 ALVYFSSSSENTHRFMQRLGLPATRIPLNERERIRVDEPYILVVPSYGGG------GMAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 116
Query 125 DVAAVRTGLAEFWKEQT 141
D+ VR G+ EFW++QT
Sbjct 117 DIDHVRKGVNEFWRQQT 133
>gi|91212035|ref|YP_542021.1| ribonucleotide reductase stimulatory protein [Escherichia coli
UTI89]
gi|117624910|ref|YP_853850.1| ribonucleotide reductase stimulatory protein [Escherichia coli
APEC O1]
gi|218559666|ref|YP_002392579.1| ribonucleotide reductase stimulatory protein [Escherichia coli
S88]
15 more sequence titles
Length=136
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/135 (63%), Positives = 106/135 (79%), Gaps = 8/135 (5%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGY 65
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 4 LVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAGA 57
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV++RKCSVP+LYRFELMGT+ D
Sbjct 58 VPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCSVPWLYRFELMGTQSD 117
Query 126 VAAVRTGLAEFWKEQ 140
+ VR G+ EFW+ Q
Sbjct 118 IENVRKGVTEFWQRQ 132
>gi|260599069|ref|YP_003211640.1| ribonucleotide reductase stimulatory protein [Cronobacter turicensis
z3032]
gi|260218246|emb|CBA33169.1| Protein nrdI [Cronobacter turicensis z3032]
Length=133
Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 103/136 (76%), Gaps = 8/136 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+L+YFSS SENTHRF+ +LG+PA RIPL R + DEPY+L++P+YGGG G
Sbjct 3 ALIYFSSRSENTHRFIARLGLPAARIPLEDRERLRADEPYILVVPSYGGG------GTAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN +HNRA LRGVIAAGN NFG FC AGDV++RKC VP+LYRFELMGT
Sbjct 57 AVPRQVIRFLNEEHNRALLRGVIAAGNRNFGEGFCRAGDVIARKCQVPFLYRFELMGTGQ 116
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G++EFW+ Q
Sbjct 117 DIENVRKGVSEFWQRQ 132
>gi|188533086|ref|YP_001906883.1| protein NrdI [Erwinia tasmaniensis Et1/99]
gi|238689689|sp|B2VDV1.1|NRDI_ERWT9 RecName: Full=Protein nrdI
gi|188028128|emb|CAO95985.1| Protein NrdI [Erwinia tasmaniensis Et1/99]
Length=136
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/139 (60%), Positives = 106/139 (77%), Gaps = 8/139 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHG--RIEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS+SENTHRF+ +L +PA RIPL +++V EPY+L++P+YGGG + G
Sbjct 3 TLVYFSSLSENTHRFIVRLNLPARRIPLDSSQQLQVSEPYILVVPSYGGGTRH------G 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VPKQVI FLN+ +NR +RGVIAAGN NFG FC AGD+++RKC VPYLYRFELMGT D
Sbjct 57 AVPKQVIQFLNDINNRQLIRGVIAAGNRNFGEAFCLAGDIIARKCHVPYLYRFELMGTSD 116
Query 125 DVAAVRTGLAEFWKEQTCH 143
D+A + G+ EFW+ QT H
Sbjct 117 DIANIYKGVTEFWQRQTAH 135
>gi|205353756|ref|YP_002227557.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|238690512|sp|B5RDD6.1|NRDI_SALG2 RecName: Full=Protein nrdI
gi|205273537|emb|CAR38523.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628864|gb|EGE35207.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
Length=135
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/135 (63%), Positives = 110/135 (82%), Gaps = 9/135 (6%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I+VDEPY+L++P+YGGG A G
Sbjct 3 ALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYILVVPSYGGGMA-------G 55
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 56 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 115
Query 125 DVAAVRTGLAEFWKE 139
D+ VR G+ EFW++
Sbjct 116 DIDNVRKGVNEFWQQ 130
>gi|237729633|ref|ZP_04560114.1| ribonucleotide reductase stimulatory protein [Citrobacter sp.
30_2]
gi|226908239|gb|EEH94157.1| ribonucleotide reductase stimulatory protein [Citrobacter sp.
30_2]
Length=135
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/135 (64%), Positives = 106/135 (79%), Gaps = 9/135 (6%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGY 65
LVYFSS SENTHRF+Q+LG+PA RIPL+ R I VDEPY+LI+P+YGGG A G
Sbjct 4 LVYFSSSSENTHRFMQRLGLPAIRIPLNERERIRVDEPYILIVPSYGGGTA-------GA 56
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VP+QVI FLN+ HNRA +RGVIA+GN NFG + AGDV+S+KC VP+LYRFELMGT+ D
Sbjct 57 VPRQVIRFLNDTHNRALIRGVIASGNRNFGDAYGRAGDVISQKCGVPWLYRFELMGTQSD 116
Query 126 VAAVRTGLAEFWKEQ 140
+ VR G++EFW+ Q
Sbjct 117 IDNVRKGVSEFWQRQ 131
>gi|301019061|ref|ZP_07183272.1| NrdI protein [Escherichia coli MS 69-1]
gi|300399414|gb|EFJ82952.1| NrdI protein [Escherichia coli MS 69-1]
Length=136
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 104/136 (77%), Gaps = 8/136 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 3 QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLNN+HNR LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNNEHNRVLLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 116
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G+ EFW+ Q
Sbjct 117 DIENVRKGVTEFWQRQ 132
>gi|82778046|ref|YP_404395.1| ribonucleotide reductase stimulatory protein [Shigella dysenteriae
Sd197]
gi|309786255|ref|ZP_07680883.1| nrdI protein [Shigella dysenteriae 1617]
gi|123561825|sp|Q32CQ1.1|NRDI_SHIDS RecName: Full=Protein nrdI
gi|81242194|gb|ABB62904.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308926000|gb|EFP71479.1| nrdI protein [Shigella dysenteriae 1617]
Length=136
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 105/136 (78%), Gaps = 8/136 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 3 QLVYFSSSSENTQRFIERLGLPAVRIPLNERKQIQVDEPYILIVPSYGGG------GTAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 116
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G+ EFW+ Q
Sbjct 117 DIENVRKGVTEFWQRQ 132
>gi|82545245|ref|YP_409192.1| ribonucleotide reductase stimulatory protein [Shigella boydii
Sb227]
gi|123558811|sp|Q31X44.1|NRDI_SHIBS RecName: Full=Protein nrdI
gi|81246656|gb|ABB67364.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332092066|gb|EGI97144.1| nrdI protein [Shigella boydii 3594-74]
Length=136
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 105/136 (78%), Gaps = 8/136 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 3 QLVYFSSSSENTQRFIERLGMPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 116
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G+ EFW+ Q
Sbjct 117 DIENVRKGVTEFWQRQ 132
>gi|15803194|ref|NP_289226.1| ribonucleotide reductase stimulatory protein [Escherichia coli
O157:H7 EDL933]
gi|15832791|ref|NP_311564.1| ribonucleotide reductase stimulatory protein [Escherichia coli
O157:H7 str. Sakai]
gi|16130588|ref|NP_417160.1| flavodoxin required for NrdEF cluster assembly [Escherichia coli
str. K-12 substr. MG1655]
229 more sequence titles
Length=136
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 105/136 (78%), Gaps = 8/136 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 3 QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 116
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G+ EFW+ Q
Sbjct 117 DIENVRKGVTEFWQRQ 132
>gi|146312795|ref|YP_001177869.1| ribonucleotide reductase stimulatory protein [Enterobacter sp.
638]
gi|167016345|sp|A4WDN8.1|NRDI_ENT38 RecName: Full=Protein nrdI
gi|145319671|gb|ABP61818.1| NrdI protein [Enterobacter sp. 638]
Length=136
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/135 (63%), Positives = 105/135 (78%), Gaps = 8/135 (5%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGY 65
LVYFSS SENT RF++++G+PA RIPL+ R I+VDEPY+L++P+YGGG G
Sbjct 4 LVYFSSSSENTLRFIERVGLPAVRIPLNERERIQVDEPYILVVPSYGGG------GTAGA 57
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VP+QVI FLN+ HNRA +RGVIAAGN NFG FC AGD++S+KC VPYLYRFELMGT+ D
Sbjct 58 VPRQVIRFLNDPHNRALIRGVIAAGNRNFGDAFCRAGDLISQKCGVPYLYRFELMGTQQD 117
Query 126 VAAVRTGLAEFWKEQ 140
V VR G+ EFW+ Q
Sbjct 118 VENVRKGVNEFWQRQ 132
>gi|303325064|pdb|3N39|C Chain C, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia
Coli In Complex With Nrdi
gi|303325066|pdb|3N39|D Chain D, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia
Coli In Complex With Nrdi
gi|303325068|pdb|3N3A|C Chain C, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia
Coli In Complex With Reduced Nrdi
gi|303325070|pdb|3N3A|D Chain D, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia
Coli In Complex With Reduced Nrdi
gi|303325072|pdb|3N3B|C Chain C, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia
Coli In Complex With Reduced Nrdi With A Trapped
Peroxide
gi|303325074|pdb|3N3B|D Chain D, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia
Coli In Complex With Reduced Nrdi With A Trapped
Peroxide
Length=153
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/135 (63%), Positives = 105/135 (78%), Gaps = 8/135 (5%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGY 65
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 24 LVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAGA 77
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+ D
Sbjct 78 VPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSD 137
Query 126 VAAVRTGLAEFWKEQ 140
+ VR G+ EFW+ Q
Sbjct 138 IENVRKGVTEFWQRQ 152
>gi|317049230|ref|YP_004116878.1| NrdI protein [Pantoea sp. At-9b]
gi|316950847|gb|ADU70322.1| NrdI protein [Pantoea sp. At-9b]
Length=144
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/136 (61%), Positives = 105/136 (78%), Gaps = 8/136 (5%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHG--RIEVDEPYVLILPTYGGGRANPGLDAGGY 65
LVYFSS SENTHRF+ +LG+PA RIP+ R+ +D+PY+L++P+YGGG A G
Sbjct 4 LVYFSSQSENTHRFITRLGLPARRIPIDSTQRLHIDQPYILVVPSYGGGSAR------GA 57
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VP QVI FLN++ NR +RGVIAAGN NFGA FC AGD++++KC VPYLYRFELMGT DD
Sbjct 58 VPGQVIQFLNDEANRRGIRGVIAAGNRNFGAGFCLAGDIIAQKCQVPYLYRFELMGTPDD 117
Query 126 VAAVRTGLAEFWKEQT 141
+A V+ G+ +FW+ QT
Sbjct 118 IANVKAGVTQFWQRQT 133
>gi|200388415|ref|ZP_03215027.1| NrdI protein [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|199605513|gb|EDZ04058.1| NrdI protein [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
Length=136
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/135 (62%), Positives = 109/135 (81%), Gaps = 8/135 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I+VDEPY+L++P+YGGG G
Sbjct 3 ALVYFSSRSENTHRFIQRLGLPATRIPLNERERIQVDEPYILVVPSYGGG------GMAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 116
Query 125 DVAAVRTGLAEFWKE 139
D+ VR G+ EFW++
Sbjct 117 DIDNVRKGVNEFWQQ 131
>gi|269794347|ref|YP_003313802.1| ribonucleoside-diphosphate reductase 2, operon protein nrdI [Sanguibacter
keddieii DSM 10542]
gi|269096532|gb|ACZ20968.1| ribonucleoside-diphosphate reductase 2, operon protein nrdI [Sanguibacter
keddieii DSM 10542]
Length=138
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/137 (63%), Positives = 105/137 (77%), Gaps = 9/137 (6%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLH---GRIEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENTHRFVQKL + A RIPL G ++VDEPYVL++PTYGGG + GG
Sbjct 4 LVYFSSTSENTHRFVQKLDVEAQRIPLRPADGFLQVDEPYVLVVPTYGGG------NDGG 57
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QV+ FLN+ NR+ +RGVIAAGNTNFG +C AG +VS+KCSVPYLY FEL+GT +
Sbjct 58 AVPRQVVKFLNDQQNRSLIRGVIAAGNTNFGEAYCLAGAIVSQKCSVPYLYGFELLGTTE 117
Query 125 DVAAVRTGLAEFWKEQT 141
DV VR GL +FW+ Q+
Sbjct 118 DVLRVREGLEQFWQRQS 134
>gi|168233767|ref|ZP_02658825.1| NrdI protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|194470351|ref|ZP_03076335.1| NrdI protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194456715|gb|EDX45554.1| NrdI protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|205332213|gb|EDZ18977.1| NrdI protein [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
Length=136
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/135 (62%), Positives = 109/135 (81%), Gaps = 8/135 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I+VDEPY+L++P+YGGG G
Sbjct 3 ALVYFSSSSENTHRFIQRLGLPATRIPLNERERIQVDEPYILVVPSYGGG------GMAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 116
Query 125 DVAAVRTGLAEFWKE 139
D+ VR G+ EFW++
Sbjct 117 DIDNVRKGVNEFWQQ 131
>gi|218701169|ref|YP_002408798.1| ribonucleotide reductase stimulatory protein [Escherichia coli
IAI39]
gi|226733408|sp|B7NSF9.1|NRDI_ECO7I RecName: Full=Protein nrdI
gi|218371155|emb|CAR18986.1| protein that stimulates ribonucleotide reduction [Escherichia
coli IAI39]
Length=136
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 105/136 (78%), Gaps = 8/136 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 3 QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTTG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 116
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G+ EFW+ Q
Sbjct 117 DIENVRKGVTEFWQRQ 132
>gi|326381479|ref|ZP_08203173.1| ribonucleotide reductase stimulatory protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326199726|gb|EGD56906.1| ribonucleotide reductase stimulatory protein [Gordonia neofelifaecis
NRRL B-59395]
Length=159
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/137 (67%), Positives = 101/137 (74%), Gaps = 8/137 (5%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR---IEVDEPYVLILPTYGGGRAN-----PG 59
+VYFSSVSE THRFVQKLG+ A RIPL R VDEPYVLI PTYGGG+ +
Sbjct 12 IVYFSSVSEYTHRFVQKLGLRAVRIPLLDRTSSFRVDEPYVLITPTYGGGKISDTGSVSS 71
Query 60 LDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFEL 119
GGYVPKQVI FLN + NR+ +RGVIA GNTNFG EF AGD+VS KC VP+LYRFEL
Sbjct 72 HAGGGYVPKQVIKFLNVEQNRSLIRGVIAGGNTNFGEEFALAGDIVSHKCQVPFLYRFEL 131
Query 120 MGTEDDVAAVRTGLAEF 136
MGT DDV VR GLA+F
Sbjct 132 MGTTDDVERVRAGLAQF 148
>gi|161615701|ref|YP_001589666.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168238721|ref|ZP_02663779.1| NrdI protein [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. SL480]
gi|168244603|ref|ZP_02669535.1| NrdI protein [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
52 more sequence titles
Length=136
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/135 (62%), Positives = 109/135 (81%), Gaps = 8/135 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I+VDEPY+L++P+YGGG G
Sbjct 3 ALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYILVVPSYGGG------GMAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 116
Query 125 DVAAVRTGLAEFWKE 139
D+ VR G+ EFW++
Sbjct 117 DIDNVRKGVNEFWQQ 131
>gi|331664231|ref|ZP_08365137.1| NrdI protein [Escherichia coli TA143]
gi|331058162|gb|EGI30143.1| NrdI protein [Escherichia coli TA143]
gi|345334015|gb|EGW66460.1| nrdI protein [Escherichia coli STEC_C165-02]
Length=135
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 106/136 (78%), Gaps = 9/136 (6%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG A G
Sbjct 3 QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGTA-------G 55
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA LRGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 56 AVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIAQKCGVPWLYRFELMGTQS 115
Query 125 DVAAVRTGLAEFWKEQ 140
D+ VR G+ EFW+ Q
Sbjct 116 DIENVRKGVTEFWQRQ 131
>gi|50122258|ref|YP_051425.1| ribonucleotide reductase stimulatory protein [Pectobacterium
atrosepticum SCRI1043]
gi|67460809|sp|Q6D1W1.1|NRDI_ERWCT RecName: Full=Protein nrdI
gi|49612784|emb|CAG76234.1| NrdI protein [Pectobacterium atrosepticum SCRI1043]
Length=135
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/137 (61%), Positives = 106/137 (78%), Gaps = 9/137 (6%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPL---HGRIEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENTHRF+ ++ +PA RIP+ ++VD PY+L++P+YGGG G
Sbjct 4 LVYFSSQSENTHRFICRVDLPALRIPIATEQPALKVDRPYILVVPSYGGGSTK------G 57
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN+ HNRA LRGVIAAGNTNFGA +C AGD++++KC VPYLYRFEL+GT +
Sbjct 58 AVPRQVIIFLNDPHNRAYLRGVIAAGNTNFGAAYCIAGDIIAQKCQVPYLYRFELLGTAE 117
Query 125 DVAAVRTGLAEFWKEQT 141
DVA VR G+ EFW++QT
Sbjct 118 DVANVRKGVTEFWQQQT 134
>gi|16761588|ref|NP_457205.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143068|ref|NP_806410.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213027723|ref|ZP_03342170.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
9 more sequence titles
Length=136
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/135 (62%), Positives = 109/135 (81%), Gaps = 8/135 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I+VDEPY+L++P+YGGG G
Sbjct 3 ALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYILVVPSYGGG------GMAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 116
Query 125 DVAAVRTGLAEFWKE 139
D+ VR G+ EFW++
Sbjct 117 DIDNVRKGVNEFWQQ 131
>gi|322831491|ref|YP_004211518.1| NrdI protein [Rahnella sp. Y9602]
gi|321166692|gb|ADW72391.1| NrdI protein [Rahnella sp. Y9602]
Length=134
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/136 (62%), Positives = 105/136 (78%), Gaps = 9/136 (6%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLH---GRIEVDEPYVLILPTYGGGRANPGLDAGG 64
LVYFSS SENTHRFV + G+PA RIP+ ++ VD PY+L++P+YGGG A G
Sbjct 4 LVYFSSSSENTHRFVGRTGLPAIRIPVDRQPEKLRVDLPYILVVPSYGGGSAK------G 57
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP QVI FLN++HNR+ +RGVIAAGNTNFGA +C AGD++S+KC VPYLYRFEL+GT +
Sbjct 58 AVPTQVIRFLNDEHNRSLIRGVIAAGNTNFGAAYCIAGDIISQKCQVPYLYRFELLGTPE 117
Query 125 DVAAVRTGLAEFWKEQ 140
DVA VR G+ EFW+ Q
Sbjct 118 DVAKVRQGVTEFWQRQ 133
>gi|16766117|ref|NP_461732.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|62181310|ref|YP_217727.1| ribonucleotide reductase stimulatory protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|167552695|ref|ZP_02346447.1| NrdI protein [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
24 more sequence titles
Length=136
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/135 (62%), Positives = 109/135 (81%), Gaps = 8/135 (5%)
Query 7 SLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGG 64
+LVYFSS SENTHRF+Q+LG+PATRIPL+ R I+VDEPY+L++P+YGGG G
Sbjct 3 ALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYILVVPSYGGG------GMAG 56
Query 65 YVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTED 124
VP+QVI FLN++HNRA++RGVIA+GN NFG + AGDV+++KC VP+LYRFELMGT+
Sbjct 57 AVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQR 116
Query 125 DVAAVRTGLAEFWKE 139
D+ VR G+ EFW++
Sbjct 117 DIDNVRKGVNEFWQQ 131
>gi|323966926|gb|EGB62354.1| NrdI Flavodoxin [Escherichia coli M863]
Length=136
Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/135 (63%), Positives = 104/135 (78%), Gaps = 8/135 (5%)
Query 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGY 65
LVYFSS SENT RF+++LG+PA RIPL+ R I+VDEPY+LI+P+YGGG G
Sbjct 4 LVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAGA 57
Query 66 VPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDD 125
VP+QVI FLN+ HNRA LRGVIA+GN NFG + AGDV++RKC VP+LYRFELMGT+ D
Sbjct 58 VPRQVIRFLNDAHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSD 117
Query 126 VAAVRTGLAEFWKEQ 140
+ VR G+ EFW+ Q
Sbjct 118 IENVRKGVTEFWQRQ 132
Lambda K H
0.321 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129459908798
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40