BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3056 Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|15610193|ref|NP_217572.1| DNA polymerase IV [Mycobacterium tu... 700 0.0 gi|289444620|ref|ZP_06434364.1| DNA-damage-inducible protein P d... 697 0.0 gi|340628048|ref|YP_004746500.1| putative DNA-damage-inducible p... 691 0.0 gi|339295891|gb|AEJ48002.1| DNA polymerase IV [Mycobacterium tub... 569 3e-160 gi|41409204|ref|NP_962040.1| DNA polymerase IV [Mycobacterium av... 508 4e-142 gi|254776343|ref|ZP_05217859.1| DNA polymerase IV [Mycobacterium... 506 1e-141 gi|118467809|ref|YP_886644.1| DNA polymerase IV [Mycobacterium s... 503 2e-140 gi|118465811|ref|YP_883086.1| DNA polymerase IV [Mycobacterium a... 502 3e-140 gi|254820776|ref|ZP_05225777.1| DNA polymerase IV [Mycobacterium... 496 2e-138 gi|296171148|ref|ZP_06852596.1| DNA-directed DNA polymerase IV [... 490 1e-136 gi|342858093|ref|ZP_08714748.1| DNA polymerase IV [Mycobacterium... 487 1e-135 gi|145224889|ref|YP_001135567.1| DNA polymerase IV [Mycobacteriu... 485 4e-135 gi|108798780|ref|YP_638977.1| DNA polymerase IV [Mycobacterium s... 483 2e-134 gi|120403031|ref|YP_952860.1| DNA polymerase IV [Mycobacterium v... 466 2e-129 gi|333921049|ref|YP_004494630.1| DNA polymerase IV [Amycolicicoc... 380 1e-103 gi|54027589|ref|YP_121831.1| DNA polymerase IV [Nocardia farcini... 362 5e-98 gi|258650741|ref|YP_003199897.1| DNA polymerase IV [Nakamurella ... 361 1e-97 gi|343925680|ref|ZP_08765197.1| DNA polymerase IV [Gordonia alka... 358 6e-97 gi|262201146|ref|YP_003272354.1| DNA-directed DNA polymerase [Go... 354 1e-95 gi|300787132|ref|YP_003767423.1| DNA polymerase IV [Amycolatopsi... 352 5e-95 gi|256394957|ref|YP_003116521.1| DNA polymerase IV [Catenulispor... 347 2e-93 gi|326382970|ref|ZP_08204659.1| DNA polymerase IV [Gordonia neof... 340 2e-91 gi|284034756|ref|YP_003384687.1| DNA-directed DNA polymerase [Kr... 334 1e-89 gi|111018701|ref|YP_701673.1| DNA polymerase IV [Rhodococcus jos... 333 3e-89 gi|226360813|ref|YP_002778591.1| DNA polymerase IV [Rhodococcus ... 331 8e-89 gi|331697720|ref|YP_004333959.1| DNA polymerase IV [Pseudonocard... 328 5e-88 gi|296271438|ref|YP_003654070.1| DNA-directed DNA polymerase [Th... 323 2e-86 gi|325001203|ref|ZP_08122315.1| DNA polymerase IV [Pseudonocardi... 320 2e-85 gi|119717925|ref|YP_924890.1| DNA polymerase IV [Nocardioides sp... 318 6e-85 gi|317126552|ref|YP_004100664.1| DNA-directed DNA polymerase [In... 316 3e-84 gi|332670908|ref|YP_004453916.1| DNA-directed DNA polymerase [Ce... 311 1e-82 gi|302527820|ref|ZP_07280162.1| DNA polymerase IV [Streptomyces ... 309 5e-82 gi|116670568|ref|YP_831501.1| DNA polymerase IV [Arthrobacter sp... 308 7e-82 gi|119963623|ref|YP_949330.1| DNA polymerase IV [Arthrobacter au... 300 2e-79 gi|229819533|ref|YP_002881059.1| DNA polymerase IV [Beutenbergia... 296 4e-78 gi|84497569|ref|ZP_00996391.1| DNA polymerase IV [Janibacter sp.... 295 9e-78 gi|326332711|ref|ZP_08198973.1| DNA polymerase IV 2 (Pol IV 2) [... 292 6e-77 gi|325964532|ref|YP_004242438.1| nucleotidyltransferase/DNA poly... 292 6e-77 gi|220913808|ref|YP_002489117.1| DNA polymerase IV [Arthrobacter... 289 5e-76 gi|134100349|ref|YP_001106010.1| DNA polymerase IV [Saccharopoly... 277 2e-72 gi|307352827|ref|YP_003893878.1| DNA-directed DNA polymerase [Me... 206 5e-51 gi|85859606|ref|YP_461807.1| DNA polymerase IV [Syntrophus acidi... 203 4e-50 gi|193222445|emb|CAL63465.2| DNA-directed DNA polymerase [Hermin... 199 6e-49 gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydi... 195 8e-48 gi|284991699|ref|YP_003410253.1| DNA-directed DNA polymerase [Ge... 193 3e-47 gi|253999123|ref|YP_003051186.1| DNA-directed DNA polymerase [Me... 193 3e-47 gi|114331606|ref|YP_747828.1| DNA-directed DNA polymerase [Nitro... 193 4e-47 gi|339484436|ref|YP_004696222.1| DNA polymerase IV [Nitrosomonas... 192 6e-47 gi|332286231|ref|YP_004418142.1| DNA-damage-inducible protein p ... 192 7e-47 gi|268323380|emb|CBH36968.1| DNA polymerase IV [uncultured archa... 191 1e-46 >gi|15610193|ref|NP_217572.1| DNA polymerase IV [Mycobacterium tuberculosis H37Rv] gi|15842623|ref|NP_337660.1| DNA polymerase IV [Mycobacterium tuberculosis CDC1551] gi|31794234|ref|NP_856727.1| DNA polymerase IV [Mycobacterium bovis AF2122/97] 73 more sequence titles Length=346 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG Sbjct 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG Sbjct 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 Query 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG Sbjct 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 Query 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEV 240 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEV Sbjct 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEV 240 Query 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF Sbjct 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 Query 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA Sbjct 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 >gi|289444620|ref|ZP_06434364.1| DNA-damage-inducible protein P dinP [Mycobacterium tuberculosis T46] gi|289571260|ref|ZP_06451487.1| DNA-damage-inducible protein P dinP [Mycobacterium tuberculosis T17] gi|289751729|ref|ZP_06511107.1| DNA-damage-inducible protein P dinP [Mycobacterium tuberculosis T92] gi|289417539|gb|EFD14779.1| DNA-damage-inducible protein P dinP [Mycobacterium tuberculosis T46] gi|289545014|gb|EFD48662.1| DNA-damage-inducible protein P dinP [Mycobacterium tuberculosis T17] gi|289692316|gb|EFD59745.1| DNA-damage-inducible protein P dinP [Mycobacterium tuberculosis T92] Length=346 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 345/346 (99%), Gaps = 0/346 (0%) Query 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG Sbjct 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG Sbjct 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 Query 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG Sbjct 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 Query 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEV 240 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAK GGDTEV Sbjct 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKCGGDTEV 240 Query 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF Sbjct 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 Query 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA Sbjct 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 >gi|340628048|ref|YP_004746500.1| putative DNA-damage-inducible protein P DINP [Mycobacterium canettii CIPT 140010059] gi|340006238|emb|CCC45412.1| putative DNA-damage-inducible protein P DINP (DNA polymerase V) (POL IV 2) (DNA nucleotidyltransferase (DNA-directed)) [Mycobacterium canettii CIPT 140010059] Length=347 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/347 (99%), Positives = 344/347 (99%), Gaps = 1/347 (0%) Query 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 MPTAAPRWILHVDLDQFLASVEL RHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG Sbjct 1 MPTAAPRWILHVDLDQFLASVELRRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG Sbjct 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 Query 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG Sbjct 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 Query 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTE 239 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW LLLAKGGGDTE Sbjct 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLLAKGGGDTE 240 Query 240 VSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT 299 V AQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT Sbjct 241 VRAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT 300 Query 300 FYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 FYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA Sbjct 301 FYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 347 >gi|339295891|gb|AEJ48002.1| DNA polymerase IV [Mycobacterium tuberculosis CCDC5079] Length=282 Score = 569 bits (1466), Expect = 3e-160, Method: Compositional matrix adjust. Identities = 282/282 (100%), Positives = 282/282 (100%), Gaps = 0/282 (0%) Query 65 MPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDD 124 MPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDD Sbjct 1 MPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDD 60 Query 125 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV 184 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV Sbjct 61 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV 120 Query 185 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQA 244 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQA Sbjct 121 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQA 180 Query 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRT 304 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRT Sbjct 181 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRT 240 Query 305 KIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 KIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA Sbjct 241 KIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 282 >gi|41409204|ref|NP_962040.1| DNA polymerase IV [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398024|gb|AAS05654.1| DinP [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459250|gb|EGO38195.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [Mycobacterium avium subsp. paratuberculosis S397] Length=347 Score = 508 bits (1309), Expect = 4e-142, Method: Compositional matrix adjust. Identities = 269/345 (78%), Positives = 298/345 (87%), Gaps = 7/345 (2%) Query 5 APRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAG 64 +PRW+LHVDLDQFLASVEL R PELAGLPVIVGGNGDP EPRKVVTCASYEAR +GVRAG Sbjct 2 SPRWVLHVDLDQFLASVELRRRPELAGLPVIVGGNGDPNEPRKVVTCASYEAREFGVRAG 61 Query 65 MPLRTAARRCPE---ATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGT 121 MPLR AARRCP TFLPS+PAAY+AAS++V+ LLRDLG+PVEVWGWDEAYLAV T Sbjct 62 MPLRAAARRCPPDSGVTFLPSDPAAYDAASDQVMGLLRDLGHPVEVWGWDEAYLAV---T 118 Query 122 PDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGD 181 DPIEVAE+IR VI S+TGL+CS+GISDNKQRAKIATG AKP G++ LTDANWMA+M D Sbjct 119 ATDPIEVAEQIRGVISSETGLTCSVGISDNKQRAKIATGFAKPDGVFVLTDANWMALMAD 178 Query 182 RTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLL-AKGGGDTEV 240 R V+ALWGVGPKT K+LA L I TV+QLAH+D+ LL +TFGPRT LWLLL AKGGGD V Sbjct 179 RPVDALWGVGPKTAKKLADLQITTVWQLAHSDAELLTATFGPRTGLWLLLLAKGGGDDHV 238 Query 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 SAQ WVPRSRSH VTFPRDLT R+EME+AVT+LA + + EV+ + R VTRVAVTVRTATF Sbjct 239 SAQPWVPRSRSHVVTFPRDLTDRAEMETAVTDLADQAVAEVLTAGRVVTRVAVTVRTATF 298 Query 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 YTRTKIRKL APSTD DVI AAA VLDLFELDRPVRLLGVRLEL Sbjct 299 YTRTKIRKLDAPSTDRDVIVAAALRVLDLFELDRPVRLLGVRLEL 343 >gi|254776343|ref|ZP_05217859.1| DNA polymerase IV [Mycobacterium avium subsp. avium ATCC 25291] Length=347 Score = 506 bits (1304), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 269/345 (78%), Positives = 297/345 (87%), Gaps = 7/345 (2%) Query 5 APRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAG 64 +PRW+LHVDLDQFLASVEL R PELAGLPVIVGGNGDP EPRKVVTCASYEAR +GVRAG Sbjct 2 SPRWVLHVDLDQFLASVELRRRPELAGLPVIVGGNGDPNEPRKVVTCASYEAREFGVRAG 61 Query 65 MPLRTAARRCPE---ATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGT 121 MPLR AARRCP TFLP +PAAY+AAS++V+ LLRDLG+PVEVWGWDEAYLAV T Sbjct 62 MPLRAAARRCPPDSGVTFLPPDPAAYDAASDQVMGLLRDLGHPVEVWGWDEAYLAV---T 118 Query 122 PDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGD 181 DPIEVAE+IR VI S+TGLSCS+GISDNKQRAKIAT AKP G++ LTDANWMA+M D Sbjct 119 ATDPIEVAEQIRGVISSETGLSCSVGISDNKQRAKIATSFAKPDGVFVLTDANWMALMAD 178 Query 182 RTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLL-AKGGGDTEV 240 R V+ALWGVGPKT K+LA L I TV+QLAH+D+ LL +TFGPRT LWLLL AKGGGD V Sbjct 179 RPVDALWGVGPKTAKKLADLQITTVWQLAHSDAELLTATFGPRTGLWLLLLAKGGGDDHV 238 Query 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 SAQ WVPRSRSH VTFPRDLT R+EME+AVT+LA + + EV+A+ R VTRVAVTVRTATF Sbjct 239 SAQPWVPRSRSHVVTFPRDLTDRAEMETAVTDLADQAVAEVLAAGRVVTRVAVTVRTATF 298 Query 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 YTRTKIRKL APSTD DVI AAA VLDLFELDRPVRLLGVRLEL Sbjct 299 YTRTKIRKLDAPSTDRDVIVAAALRVLDLFELDRPVRLLGVRLEL 343 >gi|118467809|ref|YP_886644.1| DNA polymerase IV [Mycobacterium smegmatis str. MC2 155] gi|118468166|ref|YP_885415.1| DNA polymerase IV [Mycobacterium smegmatis str. MC2 155] gi|118169096|gb|ABK69992.1| DNA polymerase IV [Mycobacterium smegmatis str. MC2 155] gi|118169453|gb|ABK70349.1| DNA polymerase IV [Mycobacterium smegmatis str. MC2 155] Length=356 Score = 503 bits (1294), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 249/341 (74%), Positives = 283/341 (83%), Gaps = 1/341 (0%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 +W+LHVDLDQFLASVEL R P+L G PVIVGG+GDP+EPRKVVTCASYEAR +GV AGMP Sbjct 3 KWVLHVDLDQFLASVELRRRPDLRGQPVIVGGSGDPSEPRKVVTCASYEAREFGVHAGMP 62 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LR AARRCP+ATFLPS+PAAY+ ASE+V+ LLRDLG+P+EVWGWDEAYL DP+ Sbjct 63 LRAAARRCPDATFLPSDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPDESDPV 122 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 EVAE IR V+ ++TGLSCS+GISDNKQRAK+ATG AKPAGIY LT+ANWM +MGDR +A Sbjct 123 EVAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEANWMTVMGDRPPDA 182 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTEVSAQAW 245 LWGVGPKTTK+LA +GI TV LA TD +L + FGP T LW LLLAKGGGDTEVS++ W Sbjct 183 LWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPW 242 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 VPRSRSH VTFP+DLT R EM+SAV +LA +TL E+V R VTRVAVTVRT+TFYTRTK Sbjct 243 VPRSRSHVVTFPQDLTERREMDSAVRDLALQTLAEIVEQGRIVTRVAVTVRTSTFYTRTK 302 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 IRKL APSTD I A VLD FELDRPVRLLGVRLELA Sbjct 303 IRKLPAPSTDAGQIVDTALAVLDQFELDRPVRLLGVRLELA 343 >gi|118465811|ref|YP_883086.1| DNA polymerase IV [Mycobacterium avium 104] gi|118167098|gb|ABK67995.1| DNA polymerase IV 2 [Mycobacterium avium 104] Length=342 Score = 502 bits (1293), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 268/341 (79%), Positives = 295/341 (87%), Gaps = 7/341 (2%) Query 9 ILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLR 68 +LHVDLDQFLASVEL R PELAGLPVIVGGNGDP EPRKVVTCASYEAR +GVRAGMPLR Sbjct 1 MLHVDLDQFLASVELRRRPELAGLPVIVGGNGDPNEPRKVVTCASYEAREFGVRAGMPLR 60 Query 69 TAARRCPE---ATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDP 125 AARRCP TFLPS+PAAY+AAS++V+ LLRDLG+PVEVWGWDEAYLAV T DP Sbjct 61 AAARRCPPDSGVTFLPSDPAAYDAASDQVMGLLRDLGHPVEVWGWDEAYLAV---TATDP 117 Query 126 IEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVE 185 IEVAE+IR VI S+TGLSCS+GISDNKQRAKIATG AKP G++ LTDANWMA+M DR V+ Sbjct 118 IEVAEQIRGVISSETGLSCSVGISDNKQRAKIATGFAKPDGVFVLTDANWMALMADRPVD 177 Query 186 ALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLL-AKGGGDTEVSAQA 244 ALWGVGPKT K+LA L I TV+QLAH+D+ LL +TFGPRT LWLLL AKGGGD VSAQ Sbjct 178 ALWGVGPKTAKKLADLQITTVWQLAHSDAELLTATFGPRTGLWLLLLAKGGGDDHVSAQP 237 Query 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRT 304 WVPRSRSH VTFPRDLT R+EME+AVT+LA + + EV+A+ R VTRVAVTVRTATFYTRT Sbjct 238 WVPRSRSHVVTFPRDLTDRAEMETAVTDLADQAVAEVLAAGRVVTRVAVTVRTATFYTRT 297 Query 305 KIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 KIRKL APSTD DVI AAA VLDLFELDRPVRLLGVRLEL Sbjct 298 KIRKLDAPSTDRDVIVAAALRVLDLFELDRPVRLLGVRLEL 338 >gi|254820776|ref|ZP_05225777.1| DNA polymerase IV [Mycobacterium intracellulare ATCC 13950] Length=347 Score = 496 bits (1277), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 259/346 (75%), Positives = 297/346 (86%), Gaps = 4/346 (1%) Query 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 M AA W+LHVDLDQFLASVEL R PELAGLPVIVGG+GDP+EPRKVVTCASYEAR +G Sbjct 1 MSAAARDWVLHVDLDQFLASVELRRRPELAGLPVIVGGSGDPSEPRKVVTCASYEAREFG 60 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 VRAGMPLR AARRCP+ATFLPS+PAAY+AAS EV+ LLRDLG+PVEVWGWDEAY+AV Sbjct 61 VRAGMPLRAAARRCPDATFLPSDPAAYDAASGEVMGLLRDLGHPVEVWGWDEAYVAV--- 117 Query 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 +DP EVA++IR VI ++TGLSCS+GISDNKQRAK+ATG AKP G++ LTDANWMA+M Sbjct 118 HAEDPGEVAQQIRSVISTETGLSCSVGISDNKQRAKVATGFAKPDGVFVLTDANWMALMA 177 Query 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTE 239 DR V+ALWGVGPKT K+LA L I TV+QLA +D+ LL +TFG RT LW LLLAKGGGD+ Sbjct 178 DRPVDALWGVGPKTAKKLADLEITTVWQLAGSDAELLTATFGARTGLWLLLLAKGGGDSH 237 Query 240 VSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT 299 VSA+ WVPRSRSH VTFPRDLT R+EM +AVT LA++ L++V+A +R VTRVAVTVRT+T Sbjct 238 VSAEPWVPRSRSHVVTFPRDLTDRAEMNAAVTGLAEQALDDVLAEARVVTRVAVTVRTST 297 Query 300 FYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 FYTRTKIRKL AP+TD D I AAA VLDLF LDRPVRLLGVRLEL Sbjct 298 FYTRTKIRKLDAPTTDRDTIVAAALRVLDLFSLDRPVRLLGVRLEL 343 >gi|296171148|ref|ZP_06852596.1| DNA-directed DNA polymerase IV [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894284|gb|EFG74039.1| DNA-directed DNA polymerase IV [Mycobacterium parascrofulaceum ATCC BAA-614] Length=347 Score = 490 bits (1262), Expect = 1e-136, Method: Compositional matrix adjust. Identities = 266/347 (77%), Positives = 297/347 (86%), Gaps = 4/347 (1%) Query 1 MPTAAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 M AP W+LHVDLDQFLASVEL RHPELAGLPVIVGGNGDPTEPRKVVTCASYEAR +G Sbjct 1 MTAPAPLWVLHVDLDQFLASVELRRHPELAGLPVIVGGNGDPTEPRKVVTCASYEAREFG 60 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 V AGMPLR AARRCPEATFLPS+ AAY+AASE+V+ LLRD+G+PVEVWGWDEAY+ VA Sbjct 61 VHAGMPLRAAARRCPEATFLPSDAAAYDAASEQVMGLLRDVGHPVEVWGWDEAYVGVATA 120 Query 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 DP VAEEIR VI S+TGLSCSIGISDNKQRAK+ATG AKPAGI+ LTDANWM +M Sbjct 121 ---DPTGVAEEIRTVIASETGLSCSIGISDNKQRAKVATGFAKPAGIFTLTDANWMTLMA 177 Query 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTE 239 DR V+ALWGVGPKT K+LA L I TV +LAH+D+ L S FGPRT LW LLLAKGGGDT Sbjct 178 DRPVDALWGVGPKTAKKLAALEITTVRELAHSDAEPLTSAFGPRTGLWLLLLAKGGGDTG 237 Query 240 VSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT 299 VSA+ W+PRSRSH VTFPRDLT R+EM+S+VT+L ++ L +V+A+ R VTRVAVTVRTAT Sbjct 238 VSAEPWIPRSRSHVVTFPRDLTDRAEMDSSVTQLTEQALTDVLAAGRVVTRVAVTVRTAT 297 Query 300 FYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 FYTRTKIRKL+AP+TD D I AAA VLDLFELDRPVRLLGVRLELA Sbjct 298 FYTRTKIRKLEAPTTDRDTIVAAALRVLDLFELDRPVRLLGVRLELA 344 >gi|342858093|ref|ZP_08714748.1| DNA polymerase IV [Mycobacterium colombiense CECT 3035] gi|342133797|gb|EGT86977.1| DNA polymerase IV [Mycobacterium colombiense CECT 3035] Length=337 Score = 487 bits (1254), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 257/336 (77%), Positives = 287/336 (86%), Gaps = 3/336 (0%) Query 12 VDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLRTAA 71 +DLDQFLASVEL RHPELAGLPVIVGG+GDP EPRKVVTCASYEAR +GVRAGMPLR AA Sbjct 1 MDLDQFLASVELRRHPELAGLPVIVGGSGDPNEPRKVVTCASYEAREFGVRAGMPLRAAA 60 Query 72 RRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIEVAEE 131 R CPEATFLPS+PAAY+ AS++V+ LLRDLG+PVEVWGWDEAY+AV DP EVA+ Sbjct 61 RCCPEATFLPSDPAAYDEASDQVMGLLRDLGHPVEVWGWDEAYVAVTAAQ--DPGEVAQR 118 Query 132 IRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEALWGVG 191 IR VI S+TGLSCS+GISDNKQRAK+ATG AKP GI+ LTD NWM +M DR V+ALW VG Sbjct 119 IRGVISSETGLSCSVGISDNKQRAKVATGFAKPGGIFVLTDENWMPLMADRPVDALWSVG 178 Query 192 PKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTEVSAQAWVPRSR 250 PKT K+LA L I TV++LAH D+ LL +TFGPRT LW LLLAKGGGD++VSA+ WVPRSR Sbjct 179 PKTAKKLADLDITTVWELAHCDAELLTTTFGPRTGLWLLLLAKGGGDSQVSAEPWVPRSR 238 Query 251 SHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKIRKLQ 310 SH VTFPRDLT RSEM++AVT LA+R L +V+A R VTRVAVTVRTATFYTRTKIRKL Sbjct 239 SHVVTFPRDLTDRSEMDTAVTNLAERALTDVLADGRVVTRVAVTVRTATFYTRTKIRKLD 298 Query 311 APSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 APSTD DVI AA VLDLFELDRPVRLLGVRLELA Sbjct 299 APSTDRDVIVPAALRVLDLFELDRPVRLLGVRLELA 334 >gi|145224889|ref|YP_001135567.1| DNA polymerase IV [Mycobacterium gilvum PYR-GCK] gi|315445218|ref|YP_004078097.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [Mycobacterium sp. Spyr1] gi|145217375|gb|ABP46779.1| DNA-directed DNA polymerase [Mycobacterium gilvum PYR-GCK] gi|315263521|gb|ADU00263.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [Mycobacterium sp. Spyr1] Length=357 Score = 485 bits (1249), Expect = 4e-135, Method: Compositional matrix adjust. Identities = 237/347 (69%), Positives = 279/347 (81%), Gaps = 5/347 (1%) Query 2 PTAAPR-WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYG 60 P A R W+LHVD+DQFLASVEL R P+L GLPVIVGGNGDP EPRKVVTCASYEAR +G Sbjct 5 PAAGERDWVLHVDMDQFLASVELQRRPDLVGLPVIVGGNGDPAEPRKVVTCASYEARTFG 64 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 V AGMPLR AARRCP+ATFLPS+P AY+AAS+ V+ +LRDLG+PVEVWGWDEAY+ Sbjct 65 VHAGMPLRAAARRCPDATFLPSDPEAYDAASDRVMGILRDLGHPVEVWGWDEAYVG---A 121 Query 121 TPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMG 180 DP +A I+ V+ SQTGL+CS+GISDNKQRAK+ATG KPAG++ LTD NWM +MG Sbjct 122 RVSDPFALARHIQTVVASQTGLTCSVGISDNKQRAKVATGFGKPAGVHMLTDENWMPVMG 181 Query 181 DRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTE 239 DR V+ALWGVGPKT K+LA +GI TV LA TDS L TFGP T LW LLLAKGGGDT Sbjct 182 DRPVDALWGVGPKTAKKLAAIGITTVADLAGTDSAELTKTFGPTTGLWILLLAKGGGDTT 241 Query 240 VSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT 299 VSA+ WVPRSRSH +TFP+DLT R+ M+ AVTELA+RTL+EV+A R VT VAVT+RT++ Sbjct 242 VSAEPWVPRSRSHVITFPQDLTERAAMDEAVTELARRTLDEVIAQQRIVTHVAVTLRTSS 301 Query 300 FYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 F+TR+KIRKL P+ D D + + A +LD F+L RPVRLLGVRLELA Sbjct 302 FHTRSKIRKLPEPTIDADAVISTATTLLDAFDLQRPVRLLGVRLELA 348 >gi|108798780|ref|YP_638977.1| DNA polymerase IV [Mycobacterium sp. MCS] gi|119867898|ref|YP_937850.1| DNA polymerase IV [Mycobacterium sp. KMS] gi|126434381|ref|YP_001070072.1| DNA polymerase IV [Mycobacterium sp. JLS] gi|108769199|gb|ABG07921.1| DNA-directed DNA polymerase [Mycobacterium sp. MCS] gi|119693987|gb|ABL91060.1| DNA-directed DNA polymerase [Mycobacterium sp. KMS] gi|126234181|gb|ABN97581.1| DNA-directed DNA polymerase [Mycobacterium sp. JLS] Length=355 Score = 483 bits (1244), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 253/342 (74%), Positives = 286/342 (84%), Gaps = 5/342 (1%) Query 6 PRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGM 65 PRWILHVDLDQFLASVEL RHPELAGLPVIVGG+GDPTEPRKVVTCASY AR +GV AGM Sbjct 2 PRWILHVDLDQFLASVELRRHPELAGLPVIVGGSGDPTEPRKVVTCASYRAREFGVHAGM 61 Query 66 PLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDP 125 PLR AARRCP+ATFLPS+ AAY+ ASE+V+ LLRDLG+PVEVWGWDEAYL +DP Sbjct 62 PLRVAARRCPDATFLPSDTAAYDEASEQVMGLLRDLGHPVEVWGWDEAYLG---ADVEDP 118 Query 126 IEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVE 185 +AE IR+V+ + TGLSCS+GISDNKQRAK+ATG KPAG++ LTDANWMA+MGDR V+ Sbjct 119 FALAERIREVV-AGTGLSCSVGISDNKQRAKVATGFGKPAGVFMLTDANWMAVMGDRPVD 177 Query 186 ALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTEVSAQA 244 ALWGVGPKT K+L LGI TV LA TD+ +L STFGP T LW LLLAKGGGD VSA Sbjct 178 ALWGVGPKTAKKLTALGITTVADLAATDAAVLTSTFGPTTGLWILLLAKGGGDDTVSAAP 237 Query 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRT 304 WVPRSRSH VTFP DLT R+EM +AVT LA++TL EVV + R VTRVAVTVRT+TFYTRT Sbjct 238 WVPRSRSHVVTFPHDLTDRAEMTAAVTRLAEQTLTEVVEAGRVVTRVAVTVRTSTFYTRT 297 Query 305 KIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 KIRKL AP+T+ V+TA A VL LF+LDRP+RLLGVRLELA Sbjct 298 KIRKLSAPTTEAGVVTATALDVLALFDLDRPIRLLGVRLELA 339 >gi|120403031|ref|YP_952860.1| DNA polymerase IV [Mycobacterium vanbaalenii PYR-1] gi|119955849|gb|ABM12854.1| DNA-directed DNA polymerase [Mycobacterium vanbaalenii PYR-1] Length=354 Score = 466 bits (1199), Expect = 2e-129, Method: Compositional matrix adjust. Identities = 239/339 (71%), Positives = 276/339 (82%), Gaps = 4/339 (1%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 WILHVD+DQFLASVEL RHPEL G PVIVGG+GDPTEPRKVVTCASYEAR +GV AGMPL Sbjct 12 WILHVDMDQFLASVELQRHPELVGHPVIVGGSGDPTEPRKVVTCASYEARQFGVHAGMPL 71 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 R+AARRCP+ATFLPS+P AY+AASE V+ LLRDLG+P+EVWGWDEAY+ DP+ Sbjct 72 RSAARRCPDATFLPSDPEAYDAASERVMGLLRDLGHPIEVWGWDEAYVGARVA---DPLA 128 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 +A I+ V+ ++TGLSCS+GISDNKQRAK+ATG KPAG++ LTD NWM MGDR V+AL Sbjct 129 LAHRIQHVVAAETGLSCSVGISDNKQRAKVATGFGKPAGVHALTDDNWMLTMGDRPVDAL 188 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW-LLLAKGGGDTEVSAQAWV 246 WGVGPKT K+LA +GI TV LA TD+ +L + FGP T LW LLLAKGGGDT+VSA+ WV Sbjct 189 WGVGPKTAKKLAAMGITTVADLAGTDAAVLTTAFGPTTGLWILLLAKGGGDTKVSAEPWV 248 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 PRSRSH VTFP+DLT RSEM AV +LAQ TL EV R VTRVAVTVRT+TFYTRTKI Sbjct 249 PRSRSHVVTFPQDLTDRSEMARAVADLAQYTLAEVTEQQRVVTRVAVTVRTSTFYTRTKI 308 Query 307 RKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 RKL +P+TD D + A +L F+LDRPVRLLGVRLEL Sbjct 309 RKLSSPTTDSDPVVGTALDLLGQFDLDRPVRLLGVRLEL 347 >gi|333921049|ref|YP_004494630.1| DNA polymerase IV [Amycolicicoccus subflavus DQS3-9A1] gi|333483270|gb|AEF41830.1| DNA polymerase IV [Amycolicicoccus subflavus DQS3-9A1] Length=340 Score = 380 bits (977), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 194/339 (58%), Positives = 242/339 (72%), Gaps = 4/339 (1%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 WI+HVDLDQFLA+VE R P L +PVIVGG GDP PR+VV CASYEARAYGVRAGMPL Sbjct 4 WIMHVDLDQFLAAVEKRRDPLLRDVPVIVGGEGDPERPRQVVACASYEARAYGVRAGMPL 63 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 RTAA++CP+A FLPS+ A Y AS EV+ +RD+G PVEV GWDEA++ DDP+ Sbjct 64 RTAAKKCPDAVFLPSDTATYEDASVEVMGTMRDMGLPVEVLGWDEAFVG---AESDDPLA 120 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 +AE+IR+ I +T L+ SIG+ DNK RAK+ATG AKPAG+YQLT NWMA+MG+R+ E+L Sbjct 121 LAEQIRQTIAERTQLASSIGVGDNKLRAKVATGFAKPAGVYQLTVDNWMAVMGNRSTESL 180 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAWV 246 WG+G KT+++LA+ G+ TV +LA D L S FGP T WL+ L +G G E+ Q Sbjct 181 WGIGRKTSQKLAEAGLVTVAELAAADRFELASRFGPTTGPWLVALGRGLGGREIVTQPAP 240 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 RS SH+ TFP+DLT R+++ ELA+ +A R + RV VTVRT+TFYTRT Sbjct 241 ARSHSHSRTFPQDLTDRADIAVRTAELARSAGEAALAEDRRIIRVGVTVRTSTFYTRTHA 300 Query 307 RKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 RKL P+ D + AA VLDLF LDRPVRLLGVR E+ Sbjct 301 RKLPQPTRDLGEVEKAALAVLDLFPLDRPVRLLGVRAEM 339 >gi|54027589|ref|YP_121831.1| DNA polymerase IV [Nocardia farcinica IFM 10152] gi|54019097|dbj|BAD60467.1| putative DNA polymerase IV family protein [Nocardia farcinica IFM 10152] Length=355 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 198/356 (56%), Positives = 234/356 (66%), Gaps = 20/356 (5%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF A+VE RHPEL G PVIVGGNGDP EPRKVVTCASY ARAYGVRAGMP Sbjct 3 RWLLHVDLDQFQAAVEFRRHPELRGRPVIVGGNGDPQEPRKVVTCASYPARAYGVRAGMP 62 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LR AAR+CP+ FLP + AAY AS+EV+A+LR VEVWGWDEA+LA DDP Sbjct 63 LRAAARKCPDGVFLPLDMAAYEDASDEVMAVLRTFPGTVEVWGWDEAFLAA---DTDDPE 119 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPA---------------GIYQLT 171 +A EIR I ++ L C+IGI DNK AK+ATG AK A G ++LT Sbjct 120 LLAREIRGAI-AELDLGCAIGIGDNKLTAKLATGFAKSAGKSSAAPADDPGAATGTFRLT 178 Query 172 DANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL-L 230 ANW +MG R ALWG+G + RLA LGI TV L D L + FGP T +L + Sbjct 179 AANWAEVMGHRPTAALWGIGNRIAARLAGLGIETVADLMAADRHRLAAEFGPSTGPYLWV 238 Query 231 LAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTR 290 L G GDTEVS++ VP RS + TFPRDLT +E+ + V +A E+ + R R Sbjct 239 LGHGKGDTEVSSEPRVPVGRSRSETFPRDLTDPAEIRAQVARIATAVAEEMAEAGRITVR 298 Query 291 VAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 V+VTVRT TF+TR+K KL P+ D IT AA V+D FELDRPVRLLGVRLE A Sbjct 299 VSVTVRTKTFFTRSKQTKLPEPTADVATITEAALRVIDRFELDRPVRLLGVRLEFA 354 >gi|258650741|ref|YP_003199897.1| DNA polymerase IV [Nakamurella multipartita DSM 44233] gi|258553966|gb|ACV76908.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] Length=344 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 187/340 (55%), Positives = 236/340 (70%), Gaps = 4/340 (1%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+ HVDLDQF SVE LR P+L G PV+VGG+GDP R+VVTCASYEARA GVRAG+P+ Sbjct 5 WLFHVDLDQFQVSVERLRRPDLRGRPVVVGGDGDPARARQVVTCASYEARALGVRAGLPM 64 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 R AAR+ P+A FLP + A Y AAS +V+ LR G P+EVWGWDEA+L V T DDP Sbjct 65 RVAARKAPDAVFLPLDHAGYEAASAQVMDTLRGTGRPLEVWGWDEAFLGV---TADDPEP 121 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 VA ++ ++ TGL CSIGI DNK RAK ATG KPAG+Y+LT ANWM+IMGDR V AL Sbjct 122 VAAGLQALVRDTTGLPCSIGIGDNKLRAKTATGFGKPAGMYRLTGANWMSIMGDRPVRAL 181 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTA-LWLLLAKGGGDTEVSAQAWV 246 WGVG + R A+ GI TV +LA D L+ +GP T + LA+G G+TE+ + W+ Sbjct 182 WGVGARGAARFAEHGIATVRELAAADPAELVRWWGPTTGPRYRALARGEGETEIRIEPWI 241 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 RSRSH T+ +DLT R +E + LA + + +VVA R +TRVAV VR ++F+T + + Sbjct 242 ARSRSHQRTYEQDLTERGVVERELRVLADQVVTDVVADDRVITRVAVVVRNSSFFTESHL 301 Query 307 RKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 R L P+T V+ AA +LD FEL RPVRLLGVR+ELA Sbjct 302 RTLPEPTTSAAVVGEAAVSLLDRFELRRPVRLLGVRVELA 341 >gi|343925680|ref|ZP_08765197.1| DNA polymerase IV [Gordonia alkanivorans NBRC 16433] gi|343764470|dbj|GAA12123.1| DNA polymerase IV [Gordonia alkanivorans NBRC 16433] Length=374 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 192/359 (54%), Positives = 240/359 (67%), Gaps = 20/359 (5%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF SVE LR PEL G+PVIVGGNGDPTE RKVVTCASYEAR GVRAGMP Sbjct 10 RWLLHVDLDQFQVSVERLRSPELVGVPVIVGGNGDPTEARKVVTCASYEARDVGVRAGMP 69 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTP---- 122 LR A ++ P+A +LP + AY+AAS +V+ +LR G+PVEVWGWDEAYL V Sbjct 70 LRAAYKKLPDAVYLPLDMGAYDAASADVMDVLRGTGHPVEVWGWDEAYLGVGVRGAEVEE 129 Query 123 -DDP--IEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAK-PAG-----------I 167 DD ++ AE +R IL + GL+ +GISDNKQRAK+ATG AK P G + Sbjct 130 FDDAGIVDFAERVRHEILDRCGLTSCVGISDNKQRAKMATGFAKRPPGATPDDGVGAPRV 189 Query 168 YQLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTAL 227 + L D NW+ +MG+R LW VGPKT+ +LA G+ TV L L++TFGP Sbjct 190 FLLDDRNWLDLMGERPTRDLWSVGPKTSAKLAATGVETVNDLIAAPRDDLIATFGPHQGN 249 Query 228 WL-LLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSR 286 WL +L +GGGD+ ++A+ W+ RS S + TF D+ SEM +A EL + L++V+A R Sbjct 250 WLYVLCRGGGDSTITAEPWLARSHSKSRTFATDIADPSEMRTAAAELLRELLDQVIAEER 309 Query 287 TVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 RVAVTVRT TFYTRTK RKL APS D D + A +L F++D PVRLLGVRL+L Sbjct 310 LPFRVAVTVRTTTFYTRTKSRKLPAPSLDFDQLEAVVADLLTKFDIDHPVRLLGVRLDL 368 >gi|262201146|ref|YP_003272354.1| DNA-directed DNA polymerase [Gordonia bronchialis DSM 43247] gi|262084493|gb|ACY20461.1| DNA-directed DNA polymerase [Gordonia bronchialis DSM 43247] Length=371 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 195/365 (54%), Positives = 240/365 (66%), Gaps = 20/365 (5%) Query 1 MPTAAP---RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEAR 57 M TA P RW+LHVDLDQF SVE LR PEL +PVIVGGNGDPTE RKVVTCASYEAR Sbjct 1 MSTAEPQRYRWLLHVDLDQFQVSVERLRSPELVDVPVIVGGNGDPTEARKVVTCASYEAR 60 Query 58 AYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAV 117 GV AGMPLR A R+ P+A +LP + AY+AAS EV+ +LR G+PVEVWGWDEAYL V Sbjct 61 DVGVHAGMPLRAAYRKLPDAVYLPLDMGAYDAASAEVMDVLRAHGHPVEVWGWDEAYLGV 120 Query 118 AP-----GTPDDP--IEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAK------P 164 P PDD ++A +R+ I ++ GL+ +GISDNKQRAK+ATG AK P Sbjct 121 GPAGSEIAAPDDAAITDLAIRLREDIRARCGLTSCVGISDNKQRAKMATGFAKRPPEPDP 180 Query 165 AG---IYQLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTF 221 G ++ L NW+ +MGDR LW VGPKT +L+ GI TV L L++ F Sbjct 181 TGGSKVFLLDGRNWLDLMGDRPTRDLWSVGPKTAAKLSGAGIETVRDLIAAPRDDLIAIF 240 Query 222 GPRTALWL-LLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNE 280 GP WL +L +GGGD ++A+ W+ RS S + TFP+DL E SAV L + L++ Sbjct 241 GPHQGNWLYVLCRGGGDATITAEPWLARSHSKSRTFPQDLVDFDEKRSAVGSLLRELLDQ 300 Query 281 VVASSRTVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLG 340 V+ R RVAVTVRTATFYTRTK RKL+ P+T DV+ +L F+ DRPVRLLG Sbjct 301 VIVEERLPFRVAVTVRTATFYTRTKSRKLREPTTSFDVLEPEVTGLLAKFDADRPVRLLG 360 Query 341 VRLEL 345 VRL+L Sbjct 361 VRLDL 365 >gi|300787132|ref|YP_003767423.1| DNA polymerase IV [Amycolatopsis mediterranei U32] gi|299796646|gb|ADJ47021.1| DNA polymerase IV [Amycolatopsis mediterranei U32] gi|340528630|gb|AEK43835.1| DNA polymerase IV [Amycolatopsis mediterranei S699] Length=341 Score = 352 bits (903), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 185/340 (55%), Positives = 227/340 (67%), Gaps = 5/340 (1%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 +W+LHVDLDQF+A+VE+ RHPEL G PV+VGGNGDP E R VV ASYEAR +GV++GMP Sbjct 2 KWVLHVDLDQFIAAVEIARHPELRGKPVVVGGNGDPAE-RAVVATASYEAREFGVQSGMP 60 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LR AA+RCP+A FLPS+P AY S V+A +R+L VEV GWDEA++ DP Sbjct 61 LRIAAKRCPDAVFLPSDPDAYLEVSARVMAAVRELPVVVEVLGWDEAFVGAETA---DPE 117 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 +A I++ + +TGLSC++GI DNK RAK+ATG KP GIY+LT NW +M R +A Sbjct 118 ALAAAIKEAVARETGLSCAVGIGDNKLRAKLATGFGKPGGIYRLTQENWWEVMAARPTDA 177 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGG-GDTEVSAQAW 245 LWG+G KT K+LA+LGI TV LA D L + FGP+T WL L GG D EVSA W Sbjct 178 LWGIGGKTAKKLAELGITTVLDLAGADPAELAARFGPKTGPWLRLLGGGISDAEVSATPW 237 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 V RSRS TF RDLT +EM + VT LA+R +V+ R RVAV VR F T T Sbjct 238 VARSRSRETTFQRDLTDPAEMAAEVTALAKRVAQDVLDEGRPAARVAVKVRFVPFLTHTH 297 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 L P++D D + AAR VL +FEL R VRLLGVR E Sbjct 298 SITLPEPTSDADELDRAAREVLGMFELTRAVRLLGVRAEF 337 >gi|256394957|ref|YP_003116521.1| DNA polymerase IV [Catenulispora acidiphila DSM 44928] gi|256361183|gb|ACU74680.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928] Length=353 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 176/343 (52%), Positives = 235/343 (69%), Gaps = 5/343 (1%) Query 4 AAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRA 63 +A W+LHVDLDQF+A+VE+ R PEL G PV+VGG GDPT R VV ASYEAR +GV + Sbjct 2 SATDWVLHVDLDQFIAAVEVARRPELRGRPVVVGGAGDPTR-RGVVATASYEAREFGVHS 60 Query 64 GMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPD 123 GMP+RTAA++CPE FLP++ AAY A SE V+A LR+ VEV GWDEA++ D Sbjct 61 GMPMRTAAKKCPECVFLPADRAAYEAVSERVMATLREFPVVVEVMGWDEAFVG---ARTD 117 Query 124 DPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRT 183 DP +A +IR+ +L +TGLSCS+GI DNK RAK ATG AKPAG+++LT +W A+MGDR Sbjct 118 DPEALAADIREAVLGETGLSCSVGIGDNKLRAKTATGFAKPAGVHRLTRESWAAVMGDRP 177 Query 184 VEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL-LLAKGGGDTEVSA 242 +ALWG+G +T+K+LA LG++TV +LA D +L FGP+ + LLA+G GD EV+ Sbjct 178 TDALWGIGSRTSKKLAALGLHTVAELARADRAVLADQFGPKMGPYFWLLAQGAGDAEVTG 237 Query 243 QAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYT 302 V + RS TF +D+ +E+ V +LA++ +V +R RV + +R A F T Sbjct 238 TPHVAKGRSRETTFQQDIAEPAELAEHVRQLARQVAQDVADEARPAARVGLKIRYAPFVT 297 Query 303 RTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 +T+ L APS+D + I AA V +L ELDRPVRLLGVR+E Sbjct 298 KTRSITLPAPSSDAEEIERAALEVFELLELDRPVRLLGVRVEF 340 >gi|326382970|ref|ZP_08204659.1| DNA polymerase IV [Gordonia neofelifaecis NRRL B-59395] gi|326198106|gb|EGD55291.1| DNA polymerase IV [Gordonia neofelifaecis NRRL B-59395] Length=367 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 183/356 (52%), Positives = 229/356 (65%), Gaps = 17/356 (4%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LH+DLDQF SVE LR PEL G VIVGG+GDP R+VVTCASYEAR+ GVRAGMP Sbjct 8 RWLLHIDLDQFQVSVERLRRPELIGRQVIVGGDGDPARARQVVTCASYEARSLGVRAGMP 67 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGT----- 121 +R A ++ P+A FLP + Y A+SE V+ +LR G +EVWGWDEAYL + + Sbjct 68 MRAAGKKAPDAVFLPLDMPEYEASSERVMGVLRGFGDALEVWGWDEAYLGIEERSLPPRR 127 Query 122 -PDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAK----------PAGIYQL 170 DD + A +IR + TGL C +G+SDNKQRAK ATG AK A ++ L Sbjct 128 RIDDVVATAHDIRNAVADATGLDCCVGVSDNKQRAKAATGFAKQAIRDPEASEQARVFVL 187 Query 171 TDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL- 229 D NW +M DR LW VG +T +L+ GI+TV QL TD L++TFGP WL Sbjct 188 DDDNWSVLMDDRPCRDLWSVGSRTAAKLSDAGIDTVAQLVATDRDQLVATFGPHQGNWLY 247 Query 230 LLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVT 289 +L +GGGD +SA+ WV +S S A T+ D+T EM +AV L + L +VVA R Sbjct 248 VLCRGGGDDAISAEPWVAKSHSKARTYDADITDPGEMHAAVRTLTKDVLEQVVAEGRMPF 307 Query 290 RVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 RV +TVRTA FYTRTK+RKL P+T + I A A +LD FE+DRPVRLL VRLEL Sbjct 308 RVGLTVRTAGFYTRTKMRKLPEPTTQLEPIAAVAAALLDAFEIDRPVRLLAVRLEL 363 >gi|284034756|ref|YP_003384687.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] gi|283814049|gb|ADB35888.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] Length=352 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 185/348 (54%), Positives = 234/348 (68%), Gaps = 12/348 (3%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+LHVD+DQF+A+VE+ R PEL G+PV+VGG+GDP + R+VV ASYEARA+GV +GMPL Sbjct 4 WLLHVDMDQFIAAVEIRRRPELRGVPVVVGGSGDPQQARQVVATASYEARAFGVHSGMPL 63 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 R A R+CPEA FLPS+PAAY AAS EV+ LR VEVWGWDE ++ + DDP + Sbjct 64 RAAYRKCPEAVFLPSDPAAYEAASAEVMDALRSFPVVVEVWGWDECFVG---ASTDDPEQ 120 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKP--------AGIYQLTDANWMAIM 179 +A E+R +L +TGL+CSIGI DNK RAK+ATG AKP G ++LT ANW +M Sbjct 121 LAAELRAAVLDRTGLTCSIGIGDNKVRAKLATGFAKPGPDQRAGDGGTFRLTQANWAEVM 180 Query 180 GDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDT 238 R V LWG+G + ++ L +LG++TV LA D L FGP+ W L L +G GDT Sbjct 181 HHRPVRDLWGIGARMSQNLNELGLHTVADLAAADLETLRQRFGPKMGTWYLALGRGLGDT 240 Query 239 EVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTA 298 +V+ P SRSH VT+P DLT +E++ V +LA+ EVVA R + RV V VR Sbjct 241 DVTDVPREPVSRSHEVTYPEDLTDPAEIQDKVRQLAEELTREVVAEGRWIQRVHVKVRFI 300 Query 299 TFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 TF+T K RKL AP+ DP V+ AA VL FEL RPVRLLGVR E A Sbjct 301 TFFTPIKSRKLPAPTQDPSVVADAALTVLAKFELRRPVRLLGVRAEFA 348 >gi|111018701|ref|YP_701673.1| DNA polymerase IV [Rhodococcus jostii RHA1] gi|110818231|gb|ABG93515.1| probable DNA polymerase IV [Rhodococcus jostii RHA1] Length=347 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 175/340 (52%), Positives = 222/340 (66%), Gaps = 5/340 (1%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF+A+VE+LRHPEL G PV+VGG GDPTE R VV+ ASYEAR +GV +GMP Sbjct 8 RWVLHVDLDQFIAAVEVLRHPELRGRPVVVGGRGDPTE-RAVVSTASYEAREFGVGSGMP 66 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 +R AAR+ P+A FLP + AY S V+ LR LG VEV GWDEA+L V +DP Sbjct 67 MRIAARKIPDAVFLPVDAEAYTEVSGVVMDTLRKLGVVVEVMGWDEAFLGV---ETEDPE 123 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 A + +L TGL CS+GI DNK RAKIAT KP GIY+LT+ NW A+MG+R +A Sbjct 124 AFARTVHDAVLDATGLHCSVGIGDNKLRAKIATDFGKPQGIYRLTEENWFAVMGERPTDA 183 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245 LWG+G KT K+LA LGI+TV +LA L +T GP W + +G + VSA+ W Sbjct 184 LWGIGKKTAKKLAALGISTVRELADASDQELATTLGPNMGPWYARIGRGIDLSPVSAEPW 243 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 V RS S TF ++L R + + LA R +++A +R RVA+ VR A F T T Sbjct 244 VARSHSRETTFQQNLAGREAVTEEIIRLASRVREDILAENRRAVRVALKVRYAPFDTHTT 303 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 + L P+ DPDVIT AA ++D + DR VRLLGVRLE+ Sbjct 304 SKPLPEPTFDPDVITDAAAALVDRLDHDREVRLLGVRLEM 343 >gi|226360813|ref|YP_002778591.1| DNA polymerase IV [Rhodococcus opacus B4] gi|226239298|dbj|BAH49646.1| DNA polymerase IV [Rhodococcus opacus B4] Length=347 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 174/340 (52%), Positives = 220/340 (65%), Gaps = 5/340 (1%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF+A+VE+LRHPEL GLPV+VGG GDPTE R VV+ ASYEAR +GV +GMP Sbjct 8 RWVLHVDLDQFIAAVEVLRHPELRGLPVVVGGRGDPTE-RAVVSTASYEAREFGVGSGMP 66 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 +R AAR+ P+A FLP + AY S V+ LR L VEV GWDEA+L V DDP Sbjct 67 MRIAARKIPDAVFLPVDAEAYTEVSGVVMDTLRKLDVVVEVMGWDEAFLGV---ETDDPE 123 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 A + +L TGL CS+GI DNK RAKIAT KP G+Y+LT+ NW +MG+R +A Sbjct 124 AFARGVHDAVLDATGLHCSVGIGDNKLRAKIATDFGKPQGVYRLTEENWFDVMGERPTDA 183 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245 LWG+G KT K+LA LGI TV +LA L +T GP W + +G + VSA+ W Sbjct 184 LWGIGKKTAKKLAALGIGTVRELADASDQELAATLGPTMGPWYARIGRGIDHSPVSAEPW 243 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 V RS S TF ++L R + + LA R +++A +R RVA+ VR A F T T Sbjct 244 VARSHSRETTFQQNLAGREAVTEEIRRLAARVREDILAENRKAVRVALKVRYAPFDTHTT 303 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 + L P+ DPDVI AA ++D +LDR VRLLGVRLE+ Sbjct 304 SKPLPEPTFDPDVIADAAAALVDRLDLDREVRLLGVRLEM 343 >gi|331697720|ref|YP_004333959.1| DNA polymerase IV [Pseudonocardia dioxanivorans CB1190] gi|326952409|gb|AEA26106.1| DNA polymerase IV [Pseudonocardia dioxanivorans CB1190] Length=347 Score = 328 bits (842), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 180/344 (53%), Positives = 222/344 (65%), Gaps = 8/344 (2%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF+A+VE+ R PELAG PV+VGGNGDP+E R VV ASYEAR +GVR+GMP Sbjct 5 RWVLHVDLDQFIAAVEVRRRPELAGRPVVVGGNGDPSE-RAVVATASYEAREFGVRSGMP 63 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LR AARRCP+A FLPS+ AY ASE V+A+LR VEV GWDEA+L DDP Sbjct 64 LRVAARRCPDAVFLPSDGPAYEEASERVMAVLRSFPVVVEVLGWDEAFLG---AVTDDPE 120 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 +A ++++ + +TGLSC++GI DN RAKIAT KPAG ++LT NW A MGDR A Sbjct 121 ALAHDVQRAVTERTGLSCTVGIGDNTLRAKIATEFGKPAGTFRLTRFNWFATMGDRPTTA 180 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTA-LWLLLAKGGGDTEVSAQAW 245 LWG+G +T +RL +LG TV +LA L GP ++ LA+G G EVS Sbjct 181 LWGIGTRTARRLTELGYTTVTELAEARPSDLAERIGPAMGPYYVQLARGIGREEVSDAPH 240 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 V RSRS TF ++L + + V LA R ++V A R RV V VR A F TR + Sbjct 241 VARSRSRETTFQQNLESWAAVREEVAALALRVADDVRAEGRPALRVGVKVRFAPFTTRGR 300 Query 306 IRKLQAPSTDPDVITAAARHVLDLFE---LDRPVRLLGVRLELA 346 L AP++DPD + AAA VLDLFE RPVRLLGVR E Sbjct 301 SATLPAPTSDPDDLVAAALAVLDLFEERNRQRPVRLLGVRAEFG 344 >gi|296271438|ref|YP_003654070.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] gi|296094225|gb|ADG90177.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] Length=394 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 178/340 (53%), Positives = 221/340 (65%), Gaps = 5/340 (1%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LH DLDQF+A+VELLR PEL G PV+VGG GDP+ R VV+ ASYEAR YGVR+G+P Sbjct 3 RWVLHADLDQFVAAVELLRRPELRGRPVVVGGTGDPSR-RGVVSTASYEARRYGVRSGLP 61 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LRTAARRCPEA FLP + AAY AAS+ V+A LR+L VEV GWDEA+LAV G DP Sbjct 62 LRTAARRCPEAVFLPVDRAAYEAASDTVMATLRELCDVVEVIGWDEAFLAVDTG---DPE 118 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 VA I++ + T L C++GI NK +AK+AT KPAG+++LTD W ++GDR + Sbjct 119 AVARLIQRRVREATALDCTVGIGQNKLQAKLATAFGKPAGVFRLTDRTWPEVLGDRPTDV 178 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245 LWG+GPKT KRL +LGI TV QLA D L FGP WL+ LA+G + V A+ + Sbjct 179 LWGIGPKTAKRLGELGIRTVAQLAAADPRELARRFGPTIGPWLVRLARGRDPSPVVAEPY 238 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 RSR +T+ DL + V LA++ +EV A R V RV V VR A F TRT Sbjct 239 RARSRGREITYQEDLAGWDRVRREVGALARQVADEVAADDRPVGRVVVKVRYAPFTTRTH 298 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 ++L P+ + I AA LD F RPVRLLGVR E Sbjct 299 GQRLVRPARRAEAIERAALAALDRFTERRPVRLLGVRAEF 338 >gi|325001203|ref|ZP_08122315.1| DNA polymerase IV [Pseudonocardia sp. P1] Length=342 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 184/338 (55%), Positives = 223/338 (66%), Gaps = 7/338 (2%) Query 9 ILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLR 68 ILH DLDQFLA+ ELLR PELAGLP++VGG+GDP + R VV ASYEARAYGVR+GMP+R Sbjct 5 ILHADLDQFLAAAELLRRPELAGLPLVVGGDGDP-DSRTVVATASYEARAYGVRSGMPMR 63 Query 69 TAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIEV 128 A RRCP A FLPS+ Y SE+V+ LLRDLG PVEV GWDEA++ GT DP + Sbjct 64 LARRRCPGAVFLPSDKPYYEEVSEQVMGLLRDLGEPVEVIGWDEAFV----GTDGDPWAL 119 Query 129 AEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEALW 188 AE IR+ + S TGLSC++GI DN RAK ATG AKP G+++LT ANW A +G EAL Sbjct 120 AERIRETV-SSTGLSCAVGIGDNTLRAKTATGYAKPGGVHELTAANWFATLGADPPEALP 178 Query 189 GVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGP-RTALWLLLAKGGGDTEVSAQAWVP 247 G+G T + LA+LGI TV +LA + G + + GP R ++ L +G G TE+ WVP Sbjct 179 GIGRATARALAELGITTVTELAESRPGDVAARLGPNRGPYYVSLGRGMGRTELDTGPWVP 238 Query 248 RSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKIR 307 RSRS TFP DLT RS M + + LA R +V R RV + VRT +F T T+ R Sbjct 239 RSRSRETTFPADLTDRSAMHAELRTLAHRVAADVAGEDRDCVRVGIRVRTRSFRTTTRSR 298 Query 308 KLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 L P D DVI A +LD DRPVRLLGVR EL Sbjct 299 ALDPPGRDGDVIAGVAVALLDEMAPDRPVRLLGVRAEL 336 >gi|119717925|ref|YP_924890.1| DNA polymerase IV [Nocardioides sp. JS614] gi|119538586|gb|ABL83203.1| DNA-directed DNA polymerase [Nocardioides sp. JS614] Length=362 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 174/349 (50%), Positives = 226/349 (65%), Gaps = 9/349 (2%) Query 5 APRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAG 64 AP W+LHVDLDQF+A+VE+LR PELAG PV+VGG GDPTE R VV ASYEARA+GV +G Sbjct 6 APGWVLHVDLDQFIAAVEVLRRPELAGRPVVVGGRGDPTE-RGVVATASYEARAFGVGSG 64 Query 65 MPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDL---GYPV--EVWGWDEAYLAVAP 119 MPLR AAR+CP+A FLP + AY+AAS +V+ LR L G PV EV GWDEA+LA Sbjct 65 MPLRVAARKCPDAVFLPVDKEAYDAASAQVMTTLRGLEWGGVPVVLEVLGWDEAFLAAGE 124 Query 120 --GTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMA 177 G +P E AE +R +L++T L CS+GI DNK RAKIAT KP G++QLT+A+W Sbjct 125 DHGELGNPREFAEHLRAEVLAETRLHCSVGIGDNKLRAKIATDFGKPRGVWQLTEADWFP 184 Query 178 IMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL-LLAKGGG 236 +MG+R ALWG+G +T K+L+ LGI+TV QLA +D+ +L + GP W L +G Sbjct 185 VMGERPTTALWGIGARTAKKLSALGIDTVEQLARSDARVLAAELGPTMGPWFHRLGRGVD 244 Query 237 DTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVR 296 + V A WVPR+ T+ DL + V L +R ++++ R RV + VR Sbjct 245 TSPVDATPWVPRAHGREETYQEDLEDWDRVTEEVRALTRRVVDDIDREGRPAARVGIKVR 304 Query 297 TATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 F T ++ L PS DP V+ AA +L+ E RPVRLLGVRLE+ Sbjct 305 YRPFSTVSRSLTLPEPSNDPAVLEDAAVSLLERVERGRPVRLLGVRLEM 353 >gi|317126552|ref|YP_004100664.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043] gi|315590640|gb|ADU49937.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043] Length=368 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 178/350 (51%), Positives = 224/350 (64%), Gaps = 11/350 (3%) Query 3 TAAPR-WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGV 61 T PR W+LHVDLDQF+A+VE+LR PELAG PVIVGG GDPTE R VV+ ASYEAR +GV Sbjct 5 TEDPRAWVLHVDLDQFIAAVEVLRRPELAGKPVIVGGRGDPTE-RAVVSTASYEAREFGV 63 Query 62 RAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYP-----VEVWGWDEAYLA 116 +GMPLR AAR+ P+A LP + AYNAASE+V+A LR L +EV GWDEA++ Sbjct 64 GSGMPLRLAARKAPDAIILPVDADAYNAASEQVMASLRALESEHGRVVLEVLGWDEAFIG 123 Query 117 VAPGTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWM 176 V T DP A +L T L S+GI DNK RAKIATG KP G+++LT NW+ Sbjct 124 V---TTADPEAFARHAMAAVLEATQLHASVGIGDNKIRAKIATGFGKPRGVFRLTKDNWL 180 Query 177 AIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGG 235 +MGDR LWGVG K +KRLA LGI+TV QLAH+D L++ FGPR W L +G Sbjct 181 DVMGDRPTIDLWGVGSKVSKRLAGLGIDTVRQLAHSDESALVAEFGPRMGAWYRELGRGL 240 Query 236 GDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTV 295 G V + W+ R S T+ ++LT E+ A+ LA++ + R V RV + V Sbjct 241 GSAVVDDRPWIARGHSRETTYQQNLTTPEEIREAIRVLAEQAHADTAKEGRPVFRVTLKV 300 Query 296 RTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 R A F+T+TK KL+AP+ D D + AAA + D E R VRLLGVR E+ Sbjct 301 RYAPFFTQTKASKLKAPTHDRDEVVAAAVALADKLEAGREVRLLGVRAEM 350 >gi|332670908|ref|YP_004453916.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484] gi|332339946|gb|AEE46529.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484] Length=358 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 173/339 (52%), Positives = 220/339 (65%), Gaps = 6/339 (1%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+LHVDLDQF+A+VE+LR PELAG V+VGG+GDPTE R VV+ ASYEAR GV +GMPL Sbjct 7 WVLHVDLDQFVAAVEVLRRPELAGKQVVVGGHGDPTE-RGVVSTASYEARERGVHSGMPL 65 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 R AAR+ P+ FLP + AAY AASE V+A LR LG VEV GWDEA+L DDP Sbjct 66 RVAARKLPDGVFLPVDAAAYEAASERVMATLRSLGVVVEVLGWDEAFLG---ARTDDPEL 122 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 +A ++ +L T L CS+GI DNK RAKIAT L KPAG+++LT NW +MG+R AL Sbjct 123 LARRAQEAVLRATDLHCSVGIGDNKVRAKIATDLGKPAGVFRLTSENWFDVMGERPTIAL 182 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAWV 246 WGVG K ++RL+ LG+ TV +LA + L++ FGPR +W L G G V WV Sbjct 183 WGVGSKVSRRLSALGVTTVRELAGSPVDALVAEFGPRMGVWYHELGHGIGPAAVDDAPWV 242 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 PR S TF ++LT ++ AV+ LA+ + +V R V RVA+ VR A F T Sbjct 243 PRGHSRETTFQQNLTTPEQVREAVSALAREVVEDVAQDGRPVVRVALKVRYAPFVTTGMS 302 Query 307 RKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 R+L AP+TD + AA + + E DR VRLLGVR E+ Sbjct 303 RRLPAPTTDAAAVLEAAAALAERVE-DREVRLLGVRAEM 340 >gi|302527820|ref|ZP_07280162.1| DNA polymerase IV [Streptomyces sp. AA4] gi|302436715|gb|EFL08531.1| DNA polymerase IV [Streptomyces sp. AA4] Length=353 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 179/339 (53%), Positives = 220/339 (65%), Gaps = 5/339 (1%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+LHVDLDQF+A+VE+ R PEL G PVIVGGNGDP E R VV ASYEAR +GV +GMPL Sbjct 16 WVLHVDLDQFIAAVEVARRPELRGRPVIVGGNGDPAE-RAVVATASYEAREFGVDSGMPL 74 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 R A +RCP+A LP + AY S+ V+A LR+ VEV GWDEA+L + DDP Sbjct 75 RLAVKRCPDAVLLPVDAPAYQEVSDRVMARLREFPVVVEVLGWDEAFLGA---SADDPET 131 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 +A EIR+ + +TGLS S+GI DNK RAK+ATG AKPAGIY+LT NW +M + +AL Sbjct 132 LAAEIRRGVEEETGLSSSVGIGDNKLRAKLATGFAKPAGIYRLTQENWWDVMAGKPTDAL 191 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL-LLAKGGGDTEVSAQAWV 246 WG+G KT K+LA+ G +TV LA D L + FGP+ W LLA G GD EVSA +V Sbjct 192 WGIGRKTAKKLAEAGYSTVLDLAAADPDALAARFGPKLGPWYRLLAGGIGDAEVSATPYV 251 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 RSRS TF +DLT + + LA+R +V R RVAV VR A F T T Sbjct 252 ARSRSRETTFQQDLTDPAAIAEETAALAERVARDVADEGRPAARVAVKVRFAPFLTHTHS 311 Query 307 RKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 L APS DP V+ AAA+ +L F+ +PVRLLGVR E Sbjct 312 VTLAAPSADPAVLAAAAQELLGRFDFGKPVRLLGVRAEF 350 >gi|116670568|ref|YP_831501.1| DNA polymerase IV [Arthrobacter sp. FB24] gi|116610677|gb|ABK03401.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] Length=357 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 172/343 (51%), Positives = 222/343 (65%), Gaps = 9/343 (2%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF+A+VE+LR PELAG P+IVGG GDP E R VV ASYEARA+GV +GMP Sbjct 5 RWVLHVDLDQFIAAVEVLRRPELAGKPIIVGGRGDPAE-RAVVATASYEARAFGVGSGMP 63 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDL-GYPVEVWGWDEAYLAVAPGTPDDP 125 LR AAR+ P+A LP + AY AASE V+A LR G V+V GWDEA++ ++P Sbjct 64 LRIAARKVPDAVILPVDQEAYLAASETVMATLRSQPGATVQVLGWDEAFVGT---ETENP 120 Query 126 IEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVE 185 A +++ +L +T L CSIGI D RAK+ATG KPAG+++LT ANW+ +MGD + Sbjct 121 EAYARQVQAAVLERTQLHCSIGIGDTLVRAKVATGFGKPAGVFRLTSANWLKVMGDLPTK 180 Query 186 ALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQA 244 LWGVG K + RLAKLGI+TV +LA TD L+ FGPR W L +G G + V Sbjct 181 DLWGVGTKVSARLAKLGIHTVAELAATDPRDLVPEFGPRMGPWYAELGRGDGASVVDDTP 240 Query 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRT 304 WV R S TF +DLT ++++ AV EL R L +V A R V + + VR A F+T+T Sbjct 241 WVARGHSRETTFQQDLTAPAQVDDAVRELTARVLEDVEAEGRPVVGLTLKVRYAPFFTKT 300 Query 305 KIRKLQAPST-DPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 +K+ P T D D I A A + E RP+RLLG+R E+A Sbjct 301 HAKKI--PETFDRDEILARALDLAAGIEAGRPIRLLGMRAEMA 341 >gi|119963623|ref|YP_949330.1| DNA polymerase IV [Arthrobacter aurescens TC1] gi|119950482|gb|ABM09393.1| putative DNA polymerase IV [Arthrobacter aurescens TC1] Length=357 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 166/341 (49%), Positives = 219/341 (65%), Gaps = 7/341 (2%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+LHVDLDQF+A+VE+LR PELAG PVIVGG GDPTE R VV+ ASYEARA+GV +GMPL Sbjct 6 WVLHVDLDQFIAAVEVLRRPELAGKPVIVGGRGDPTE-RAVVSTASYEARAFGVGSGMPL 64 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDL-GYPVEVWGWDEAYLAVAPGTPDDPI 126 R AAR+ P+A LP + AY AASE V+A LR+ G V+V GWDEA++ + +DP Sbjct 65 RIAARKVPDAIILPVDQEAYLAASEMVMATLREQPGATVQVLGWDEAFVGI---ETEDPE 121 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 A++I+ +L +T L CS+GI D RAK AT KPAGI++LT NW+ +MG R + Sbjct 122 AYAKQIQAAVLERTQLHCSVGIGDTLVRAKNATDFGKPAGIFRLTKENWLDVMGSRPTKE 181 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245 LWGVG K ++RLAK I TV +LA ++ L+ FGP+ W L +G G +EV W Sbjct 182 LWGVGSKVSQRLAKHHITTVAELAASNPQDLVPEFGPKMGPWYAELGRGDGASEVDDTPW 241 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 V R S T+ +DLT S++E AV EL L +V A R V + + VR F+T+T Sbjct 242 VARGHSRETTYQQDLTEPSQIEDAVKELTAHVLEDVAAEGRPVIGLTLKVRYVPFFTKTY 301 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLELA 346 RK+ S D + A A + E DRP+RLLG+R E++ Sbjct 302 ARKIPE-SFDRGEVLAQALDLTGKIEPDRPIRLLGLRAEMS 341 >gi|229819533|ref|YP_002881059.1| DNA polymerase IV [Beutenbergia cavernae DSM 12333] gi|229565446|gb|ACQ79297.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] Length=353 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 168/339 (50%), Positives = 217/339 (65%), Gaps = 5/339 (1%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+LH+DLDQF+A+VE+LR PELAG PV+VGG+GDPT+ R+VV ASYEAR +GV +GMPL Sbjct 13 WVLHLDLDQFIAAVEVLRRPELAGKPVVVGGSGDPTQRRQVVATASYEAREFGVHSGMPL 72 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPIE 127 A RRCP+A FLPS+ AAY+ AS V A +R VE GWDE ++ DP Sbjct 73 TVAHRRCPDAVFLPSDHAAYDEASLHVWATVRTFPVLVEELGWDEGFIGARTA---DPEA 129 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 +A ++ +L TGL CSIG+ D++ RAK ATG AKP G+++LT WM +MG R L Sbjct 130 LARAVQAAVLEATGLHCSIGVGDSRLRAKTATGFAKPRGVHRLTAETWMPVMGQRPTRDL 189 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAWV 246 WGVGP+ ++RLA LGI TV LA D L++ FGP ++L L +GG D V++ Sbjct 190 WGVGPRISERLAGLGIRTVADLAAADEAALVAEFGPTNGPYVLDLGRGGSDARVASGPPP 249 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 RS VTFP DLT ++ V E+A+ +A SR V RVAV VR A F+T TKI Sbjct 250 RMGRSREVTFPIDLTDAVDVLGHVLEMARELTTATLADSRLVARVAVKVREAPFFTSTKI 309 Query 307 RK-LQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLE 344 K L P+ + V+ A VL+ F RPVRLLGVR+E Sbjct 310 AKVLPGPTAEVAVVEETAARVLERFGELRPVRLLGVRVE 348 >gi|84497569|ref|ZP_00996391.1| DNA polymerase IV [Janibacter sp. HTCC2649] gi|84382457|gb|EAP98339.1| DNA polymerase IV [Janibacter sp. HTCC2649] Length=371 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 162/345 (47%), Positives = 217/345 (63%), Gaps = 9/345 (2%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 RW+LHVDLDQF+A+VE+LR PELAGLPV+VGG GDPTE R VV+ ASYEARA+GV +GMP Sbjct 3 RWVLHVDLDQFIAAVEILRRPELAGLPVVVGGRGDPTE-RAVVSTASYEARAFGVHSGMP 61 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLR-DLGYPVEVWGWDEAYLAVA-PGTPDD 124 L+ A R+ P+A FLP + AY+AAS V+ LR G V+V GWDEA++ ++ PG DD Sbjct 62 LKLAVRKIPDAVFLPVDGPAYDAASAVVMETLRAHDGAVVQVLGWDEAFVGISTPG--DD 119 Query 125 PIEV---AEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGD 181 E A+ IR +L + L CS+G+ D RAKIAT KP G + LT NW +MG+ Sbjct 120 VAEAVAHADAIRAEVLEASELHCSVGVGDTTVRAKIATDFGKPQGTFVLTRDNWFEVMGE 179 Query 182 RTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTA-LWLLLAKGGGDTEV 240 R ALWGVG + RLA+ G +V QLA D +L + FGPR + L +G G T + Sbjct 180 RPTTALWGVGNRIAARLAEHGYESVQQLADADDEVLTAEFGPRMGPHYGRLGRGLGATVI 239 Query 241 SAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATF 300 W+ R+ T+ +L ++E+A+ LA + + ++ R RV + VR A F Sbjct 240 DDTPWIARAHGRETTYQSNLVEPDDIEAAIGTLADQVVEDIRREERACARVHLKVRFAPF 299 Query 301 YTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 +T T+IRKL P+ DP VI A A +L + RP+RLLGVR E+ Sbjct 300 FTTTRIRKLPEPTYDPAVIAATAMELLHGLDDARPIRLLGVRAEM 344 >gi|326332711|ref|ZP_08198973.1| DNA polymerase IV 2 (Pol IV 2) [Nocardioidaceae bacterium Broad-1] gi|325949492|gb|EGD41570.1| DNA polymerase IV 2 (Pol IV 2) [Nocardioidaceae bacterium Broad-1] Length=387 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 170/371 (46%), Positives = 218/371 (59%), Gaps = 34/371 (9%) Query 9 ILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLR 68 +LHVDLDQF+A+VE+LR PELAG PVIVGG GDPTE R VV+ ASYEARA+GV +GMPLR Sbjct 12 VLHVDLDQFIAAVEVLRRPELAGKPVIVGGRGDPTE-RAVVSTASYEARAHGVGSGMPLR 70 Query 69 TAARRCPEATFLPSNPAAYNAASEEVVALLRDL---GYPV--EVWGWDEAYLAVAPGTPD 123 A R+CP+A LP + AAY+ AS V+ LR L G PV EV GWDEA+L PG D Sbjct 71 LAVRKCPDAVLLPVDQAAYDKASAGVMDTLRSLEWGGVPVLVEVLGWDEAFLGPGPGHGD 130 Query 124 --DPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKP----------------- 164 DP+ A+++R ++L +T L +G+ +NK +AK+ATG AK Sbjct 131 LGDPVAFAQDVRDLVLERTRLHSGVGVGNNKLQAKLATGFAKQRVDGAVAREAGAGGHEP 190 Query 165 --------AGIYQLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGL 216 G+Y++T W A MG R +ALWG+G KT KRLA LGI TV L + Sbjct 191 GPDGQLRGTGVYRITHETWDAEMGHRPTDALWGIGAKTAKRLAGLGIETVADLGSASAEG 250 Query 217 LMSTFGPRTALWLL-LAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQ 275 L + GP T WL L +G + V WV R H TF +DL ++ +A L Sbjct 251 LAAAIGPTTGPWLRRLGRGADTSPVDPSPWVARGHGHEETFQQDLVEWPDIVAATRRLCA 310 Query 276 RTLNEVVASSRTVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRP 335 L +VV R VTRV + VR F+T T+ KL P+ D D + A +LD E DRP Sbjct 311 ECLADVVKEDRPVTRVEIKVRFKPFFTVTRGHKLPEPTLDGDRLADEAVALLDRVEKDRP 370 Query 336 VRLLGVRLELA 346 +RL+GVRLE+A Sbjct 371 IRLIGVRLEMA 381 >gi|325964532|ref|YP_004242438.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [Arthrobacter phenanthrenivorans Sphe3] gi|323470619|gb|ADX74304.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [Arthrobacter phenanthrenivorans Sphe3] Length=356 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 165/341 (49%), Positives = 220/341 (65%), Gaps = 9/341 (2%) Query 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67 W+LHVDLDQF+A+VE+LR PELAG VIVGG GDPTE R VV+ ASYEARAYGV +GMPL Sbjct 5 WVLHVDLDQFIAAVEVLRRPELAGKAVIVGGRGDPTE-RAVVSTASYEARAYGVGSGMPL 63 Query 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLR-DLGYPVEVWGWDEAYLAVAPGTPDDPI 126 R AAR+ P+A LP + AY AASEEV+++LR V+V GWDEA++ V ++P Sbjct 64 RIAARKVPDAVILPVDHEAYLAASEEVMSVLRAQPAATVQVLGWDEAFVGV---RTENPE 120 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 A +++ +L+QT L CS+GI D RAK+AT KPAG+++LT++NW+ +MG+R Sbjct 121 AYALRLQQAVLAQTRLHCSVGIGDTLVRAKVATTFGKPAGVFRLTESNWLEVMGERPTIE 180 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245 LWGVG + + RLAKLGI TV QLA ++ L+ FGP+ W L +G G V W Sbjct 181 LWGVGVRVSARLAKLGIETVAQLAASNPDDLVPEFGPKMGPWYAQLGRGDGARVVDDTPW 240 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 V R S TF +DLT +++ AV ELA L +V A R V + + VR A F T+T Sbjct 241 VARGHSRETTFQQDLTEPGQVDDAVRELAAHVLADVAAEGRPVVGLTLKVRYAPFTTKTY 300 Query 306 IRKLQAPST-DPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 RK+ P T DP+ + A ++ E R +RLLG+R E+ Sbjct 301 ARKI--PETADPEEVLARTLDLVGKIEPGRAIRLLGLRAEM 339 >gi|220913808|ref|YP_002489117.1| DNA polymerase IV [Arthrobacter chlorophenolicus A6] gi|219860686|gb|ACL41028.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6] Length=351 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 163/340 (48%), Positives = 214/340 (63%), Gaps = 9/340 (2%) Query 9 ILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLR 68 +LHVDLDQF+A+VE+LR PELAG PVIVGG GDPTE R VV+ ASYEARA+GV +GMPLR Sbjct 1 MLHVDLDQFIAAVEVLRRPELAGKPVIVGGRGDPTE-RAVVSTASYEARAFGVGSGMPLR 59 Query 69 TAARRCPEATFLPSNPAAYNAASEEVVALLRDL-GYPVEVWGWDEAYLAVAPGTPDDPIE 127 AAR P+A LP + AY AS EV+ +LR G V+V GWDEA++ V DP Sbjct 60 IAARNVPDAVILPVDQEAYLQASGEVMGVLRSRPGAVVQVLGWDEAFVGV---QSSDPEA 116 Query 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187 A ++++ +L T L CS+GI D RAK+AT KPAG+++LT NW+ +MG+R L Sbjct 117 YAGQLQQAVLEATRLHCSVGIGDTLVRAKVATTFGKPAGVFRLTAENWLDVMGNRPTIDL 176 Query 188 WGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAWV 246 WGVG K ++RLA LGI TV +LA D L+ FGP+ W L +G G + V WV Sbjct 177 WGVGTKVSRRLATLGITTVAELAAVDPDFLVPEFGPKMGPWYAQLGRGDGSSVVDDTPWV 236 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 R S TF DLT ++++ AV EL L++V A R V + + VR A F T+T Sbjct 237 ARGHSRETTFQHDLTEPAQVDEAVRELVAAVLDDVAAEGRPVVGLTLKVRYAPFNTKTFA 296 Query 307 RKLQAPST-DPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 R++ P T DP+ + A + E DRP+RLLG+R E+ Sbjct 297 RRI--PETADPEEVLTRALDLRGKIEPDRPIRLLGLRAEM 334 >gi|134100349|ref|YP_001106010.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338] gi|291007680|ref|ZP_06565653.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338] gi|133912972|emb|CAM03085.1| DNA polymerase IV [Saccharopolyspora erythraea NRRL 2338] Length=339 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 165/340 (49%), Positives = 218/340 (65%), Gaps = 5/340 (1%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 R +LHVDLDQF+ +VELLR PEL G PV+VGG GDPT R VV ASYEAR +GVR+G P Sbjct 3 RIVLHVDLDQFIVAVELLRRPELRGRPVLVGGVGDPTR-RGVVAGASYEAREHGVRSGTP 61 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LRTAA RCP+A FLP + AY A S E + +LR G VE GWDEA++ + DD Sbjct 62 LRTAAARCPDAVFLPLDRDAYLAVSAEFIDVLRSGGGIVEEAGWDEAFMLL---DTDDAW 118 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 + A ++ + +TGL+CS+GI DNK RAK+A+G AKPAG+++L NW ++G+R EA Sbjct 119 QSALLVQAAVRERTGLACSVGIGDNKLRAKLASGFAKPAGVFRLDTRNWWEVVGERPPEA 178 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245 LWG+G KT L++ GI+TV +LA D L + FGP T WL+ LA+G T V+ + + Sbjct 179 LWGIGRKTATYLSEFGISTVRELAGADPAALAARFGPNTGPWLVALARGYDPTPVTDEPY 238 Query 246 VPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTK 305 RS TF R+L E+ + + LA R ++ A RV V VR A F T T Sbjct 239 QARSHGREETFERNLVDPDEVRANIARLAHRVAADLAAGDEVARRVVVKVRHAPFSTHTH 298 Query 306 IRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345 R L++P+ +P+ I AAA L F+LDRP+RLLGVR E+ Sbjct 299 GRGLESPTREPEAIEAAALLALSAFDLDRPIRLLGVRAEI 338 >gi|307352827|ref|YP_003893878.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571] gi|307156060|gb|ADN35440.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571] Length=361 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/341 (37%), Positives = 182/341 (54%), Gaps = 4/341 (1%) Query 5 APRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAG 64 A R I+H+D+D F ASVE+ +P L G PV+VG + + R VV+ SYEAR YG+R+ Sbjct 7 AQRIIMHIDMDSFFASVEVRENPSLKGKPVVVGADPKGGKGRGVVSTCSYEAREYGIRSA 66 Query 65 MPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVA-PGTPD 123 MP+ TA R CPE FLP N Y S V+ ++R+ + DEAYL ++ G+ D Sbjct 67 MPVSTAYRLCPECIFLPVNMQLYKKTSANVMNIMREYSDKFQQVSIDEAYLDISFIGSYD 126 Query 124 DPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRT 183 + V EI++ I GL+CS+GI K AKIA+G+ KPAG+ + + Sbjct 127 NAESVGREIKERIFHAEGLTCSVGIGPGKVIAKIASGMNKPAGMTVVRPDAIRDFLDPLP 186 Query 184 VEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQ 243 V+A+ G+G KT RL K GI T+ L D L FG + LA+G D+EV + Sbjct 187 VDAIPGIGKKTKVRLEKHGIVTIKDLLGCDIQELKDAFGKHGIMMHRLARGIDDSEVREK 246 Query 244 AWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTR 303 +S T+P D++ S + S +++L + N + + V V +R A F R Sbjct 247 EG-QKSIGKQTTYPEDVSDTSILLSDLSDLCENVQNRLELRGYSCRTVTVKIRYAGFIDR 305 Query 304 TKIRKLQAPSTDPDVITAAARHVL-DLFELDRPVRLLGVRL 343 +K P+ D VI A+ + DL++ +RPVR LGV L Sbjct 306 SKADSFLHPTIDLTVIYEKAKDIFTDLYD-ERPVRSLGVSL 345 >gi|85859606|ref|YP_461807.1| DNA polymerase IV [Syntrophus aciditrophicus SB] gi|85722697|gb|ABC77640.1| DNA polymerase IV [Syntrophus aciditrophicus SB] Length=362 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/338 (37%), Positives = 185/338 (55%), Gaps = 3/338 (0%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 R ILH+D+D F ASVE R PEL G PV++GG GDP++ R VV+ A+YEAR YG+ + MP Sbjct 14 RRILHIDMDAFFASVEENRKPELKGKPVVIGGMGDPSK-RGVVSTANYEARKYGISSAMP 72 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 LRTA + CP A FLP + AY A S A+L ++ +E G DEAYL ++ D Sbjct 73 LRTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISENRDTDE- 131 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 +++E+I+ I +TGL+CSIGI+ NK AKIA+ + KP G+ + + + + Sbjct 132 KISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSGEDIENRLWPLPIRK 191 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQAWV 246 L+G+GPKT + L L I T+ QLA +L++ FGP +L A G D +W Sbjct 192 LYGIGPKTEEHLKALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGIDESPIITSWE 251 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 P+S S +TF D + + EL + ++++ V + +R + F T T+ Sbjct 252 PKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAEKGYAARNVILKIRYSDFRTVTRA 311 Query 307 RKLQAPSTDPDVITAAARHVLDLFELD-RPVRLLGVRL 343 + + I A L +L + +RL+GVR+ Sbjct 312 CSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRV 349 >gi|193222445|emb|CAL63465.2| DNA-directed DNA polymerase [Herminiimonas arsenicoxydans] Length=386 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 136/360 (38%), Positives = 197/360 (55%), Gaps = 25/360 (6%) Query 6 PRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEP------------------RK 47 PR I H+D+D F ASVELLR+PEL G +++G G EP R Sbjct 5 PRHIAHLDMDAFYASVELLRYPELRGRALVIGA-GSAHEPVLQADGSRRYARLRDYTGRG 63 Query 48 VVTCASYEARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEV 107 VVT ++YEARA GV + M L AA+ P+A LP++ AY S A + +E Sbjct 64 VVTTSTYEARALGVFSAMGLMKAAKLAPDAILLPTDFTAYRHYSRLFKAAAGAIAPQMED 123 Query 108 WGWDEAYLAVAPGTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGI 167 G DE YL + T DD VA+ I+ +++ TGLSCSIG++ NK AKI + L KP G+ Sbjct 124 RGIDEIYLDLNDQT-DDIAVVAQRIKDAVVAATGLSCSIGVAPNKLLAKICSDLEKPNGL 182 Query 168 YQLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTAL 227 L++A+ + V+ + G+GPK+T++LA LGI T+ QLA+ D +L + FG + Sbjct 183 TILSEADIPTRIWPLPVKKINGIGPKSTEKLAALGILTIEQLANCDPAVLRANFGRIYSA 242 Query 228 WLL-LAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTC---RSEMESAVTELAQRTLNEVVA 283 WL+ +A+G + E+ ++ P+S S T RDL RSE+ + T L +R +++V Sbjct 243 WLMRVAQGIDEREIVTRSE-PKSISRESTLERDLHAKLDRSELSALFTRLCERVADDLVR 301 Query 284 SSRTVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRL 343 V + +R A F T T+ L AP+ D I AA L LD+ +RLLGVR+ Sbjct 302 KEYLGRTVGIKLRYADFSTVTRDLTLPAPTNDAQAIRQAAGECLRRVPLDKRLRLLGVRI 361 >gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydia acanthamoebae UV7] gi|336480000|emb|CCB86598.1| DNA polymerase IV [Parachlamydia acanthamoebae UV7] Length=359 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 121/343 (36%), Positives = 180/343 (53%), Gaps = 9/343 (2%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66 R I H+D+D F AS+E+LR+P L G PVIVGG+ D R VV+ SYEARAYGV + M Sbjct 4 RIIFHIDMDAFFASIEILRNPSLKGKPVIVGGSPDK---RGVVSTCSYEARAYGVHSAMS 60 Query 67 LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPDDPI 126 L A ++CP A F+ + A Y S +V+ +L VEV DEAY+ V+ DDP Sbjct 61 LFEAKKKCPHAIFVEGDYAIYRNYSSKVMDILSRHSSLVEVVSIDEAYMDVS-FLKDDPE 119 Query 127 EVAEE----IRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDR 182 A++ +++ +L TGL+CS+GI+ NK AKIA+ AKP G+Y++ A + Sbjct 120 MTAKQYGRKLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATL 179 Query 183 TVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSA 242 + A+ G+G KT K L + T+ L D L+ +G R + L A G V Sbjct 180 PIGAIPGIGSKTEKSLIDDRLYTIADLQKIDLDTLIERYGTRGYYFYLAAHGIDKRPVDG 239 Query 243 QAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYT 302 + + P+S TF DL + + ++EL Q+ + ++ +R + F T Sbjct 240 EEYFPKSIGAETTFEADLADSTILLETLSELVQKACKRLKKYQTRTRGFSLKLRYSDFRT 299 Query 303 RTKIRKLQAPSTDPDVITAAAR-HVLDLFELDRPVRLLGVRLE 344 T+ R L + + D I AR L + D P+RL+G+ LE Sbjct 300 VTRSRLLFSHTQDEQTIWEEARDFFLKVHTKDVPLRLIGISLE 342 >gi|284991699|ref|YP_003410253.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160] gi|284064944|gb|ADB75882.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160] Length=402 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/339 (39%), Positives = 174/339 (52%), Gaps = 7/339 (2%) Query 9 ILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPLR 68 +LHVD+D F ASVE+ R PELAG PVIVGG G+ R VVT A+YEAR YGV A MP Sbjct 14 VLHVDMDAFFASVEVRRRPELAGTPVIVGGAGN----RGVVTSATYEARRYGVHAAMPTS 69 Query 69 TAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTP--DDPI 126 A R CP AT LP + A Y S V+AL R + VE DEA+L V+ D + Sbjct 70 RALRLCPTATVLPGDVALYAEVSRSVMALFRSITPLVEPLSLDEAFLDVSGAGRRLGDAV 129 Query 127 EVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEA 186 + E +R + + G++CS+G++ K AK+A+ AKP G+ + A MA + V A Sbjct 130 AIGEYLRARVFDEQGITCSVGVAGTKFVAKLASTAAKPDGLLVVRPAEVMAFLHPLPVGA 189 Query 187 LWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQAWV 246 LWGVG +T + L +LG+ TV LAH L GP L G D Sbjct 190 LWGVGARTEEVLLRLGLRTVGDLAHVPVRTLQRAVGPAAGAHLHELSWGRDPRRVVPDEP 249 Query 247 PRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTATFYTRTKI 306 RS H TF D+ + + + L++RT + + V + VR A F T T+ Sbjct 250 ERSTGHEETFGTDVDDPAVIHRELLRLSERTAGRLRSGGWLARTVTIKVRFADFATITRS 309 Query 307 RKLQAPSTDPDVITAAARHVLDLFELDRP-VRLLGVRLE 344 R L + + AR + D LDR +RL+GVR E Sbjct 310 RTLDVATDVGQEVYDTARALFDALGLDRARIRLVGVRAE 348 >gi|253999123|ref|YP_003051186.1| DNA-directed DNA polymerase [Methylovorus glucosetrophus SIP3-4] gi|253985802|gb|ACT50659.1| DNA-directed DNA polymerase [Methylovorus glucosetrophus SIP3-4] Length=391 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 129/357 (37%), Positives = 185/357 (52%), Gaps = 25/357 (7%) Query 9 ILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRK------------------VVT 50 I H+D+D F A VELL +P+L GLPV+VGG T PR+ VVT Sbjct 16 IAHLDMDMFFAGVELLHYPQLKGLPVVVGGRSIDT-PRQLADGRWQFARLGDYAGRGVVT 74 Query 51 CASYEARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGW 110 ++YEARA GV + M L AA + P+A LP+N AY S +RD+ VE G Sbjct 75 TSTYEARALGVFSAMGLMKAAAKAPDAIILPANFDAYRHYSRLFKQAVRDIAPHVEDRGI 134 Query 111 DEAYLAVAPGTPDDPIE-VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQ 169 DE Y+ ++ T +P + +A+ ++ + S TGL+CSI I+ NK AKI + L KP G+ Sbjct 135 DEIYIDLSEHT--EPSQALAQRLKDAVYSATGLTCSICIAPNKLLAKIGSELDKPDGLTL 192 Query 170 LTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL 229 L +++ + + +V + G+GPK +LA + I+T+ +LA D GLL STFG A WL Sbjct 193 LDESSLQSRIWPLSVSKINGIGPKAVAKLATINIHTIAELAQADVGLLQSTFGRSYAAWL 252 Query 230 LLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSE---MESAVTELAQRTLNEVVASSR 286 L G D P+S S TF RDL R + + T L +R ++ A Sbjct 253 LNVANGQDNRPVTTYSEPKSISRETTFERDLHVRHDRARLGEIFTSLCERVAQDLKAKHY 312 Query 287 TVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRL 343 V + +R F + T+ L +P +D I AA L L + +RLLGV+L Sbjct 313 MAGTVGIKLRYQDFTSVTRDLTLPSPISDAVAIRKAAGECLKRAPLTKKIRLLGVKL 369 >gi|114331606|ref|YP_747828.1| DNA-directed DNA polymerase [Nitrosomonas eutropha C91] gi|114308620|gb|ABI59863.1| DNA-directed DNA polymerase [Nitrosomonas eutropha C91] Length=385 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/356 (37%), Positives = 187/356 (53%), Gaps = 21/356 (5%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGG----------NGD-------PTEPRKVV 49 R I H+D+D F ASVELLR+PEL GLPV++GG NG R VV Sbjct 6 RRIAHLDMDAFYASVELLRYPELRGLPVVIGGRSVHQPIMQQNGTCLYAKLREYSGRGVV 65 Query 50 TCASYEARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWG 109 T ++YEARAYG+ + M + AA+ P+A LP++ Y+ S + ++ +E G Sbjct 66 TTSTYEARAYGIFSAMGIMQAAKLAPDAILLPADFDTYHHYSRLFKNAVANIAPHIEDRG 125 Query 110 WDEAYLAVAPGTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQ 169 DE Y+ ++ PD+ +A I++ + TGLSCSIG++ NK AKI + L KP G+ Sbjct 126 IDEIYIDLSK-HPDETTPLALRIKQAVHETTGLSCSIGVAPNKLLAKICSDLEKPNGLTI 184 Query 170 LTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWL 229 LT A+ + V + G+GPKT +LA LGI+ + +LA+ + GLL FG R AL L Sbjct 185 LTHADIPHRIWPLPVHKINGIGPKTQAKLADLGIHKIGELANAEPGLLQIHFGQRYALQL 244 Query 230 LLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRSEME--SAV-TELAQRTLNEVVASSR 286 A G D + P+S S TF RDL R + E SA+ T L ++ Sbjct 245 HHAALGNDNRPVVTSSEPKSISRETTFERDLHARQDREKLSAIFTGLCTHIAEDLHHKGY 304 Query 287 TVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVR 342 + + +R F T T+ + L P+ D I AA + L L++ +RLLGVR Sbjct 305 VGRTIGIKLRYEDFQTVTRDQTLCTPTADATTIRKAAGNCLRRVPLEQKLRLLGVR 360 >gi|339484436|ref|YP_004696222.1| DNA polymerase IV [Nitrosomonas sp. Is79A3] gi|338806581|gb|AEJ02823.1| DNA polymerase IV [Nitrosomonas sp. Is79A3] Length=393 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 127/358 (36%), Positives = 185/358 (52%), Gaps = 23/358 (6%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEP------------------RKV 48 R I H+D+D F ASVELLR+PEL GLPV++GG D +P R V Sbjct 14 RRIAHLDMDAFYASVELLRYPELRGLPVVIGGR-DEHQPLIQADGSKHFFRLRDYAGRGV 72 Query 49 VTCASYEARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVW 108 +T A+YEARA GV + M + AA+ PEA LP + A Y S A + + +E Sbjct 73 ITTATYEARAMGVHSAMGVMKAAQLAPEAILLPVDFAMYRHYSRLFKAAVAGIASQIEDS 132 Query 109 GWDEAYLAVAPGTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIY 168 G DE Y+ + PDD +A+ I++ + TGLSCSIGI+ NK +KI + L KP G+ Sbjct 133 GIDEIYIDLT-DLPDDTPALAQRIKQAVEDATGLSCSIGIAPNKLLSKICSDLEKPDGLT 191 Query 169 QLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALW 228 L ++ + V + G+GPK+ K+LA LGI T+ +LA T+ G L + FG ++W Sbjct 192 ILGISDIPERIWPLPVSKINGIGPKSAKKLALLGITTIAELAQTELGFLRTHFGRSYSIW 251 Query 229 LLLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTCRS---EMESAVTELAQRTLNEVVASS 285 L G D P+S S TF RDL R ++ A T L + +++ Sbjct 252 LYEVSHGIDQRPVITNAEPKSFSRETTFERDLHPRQDRFDLSEAFTALCLQVADDLKHKG 311 Query 286 RTVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRL 343 +++ +R F+T T+ L + DP +I AA L L + +RLLGV++ Sbjct 312 YAGRTISIKLRFEDFHTLTRDCSLATHTADPALIRRAAGECLRRVPLQKKIRLLGVKV 369 >gi|332286231|ref|YP_004418142.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7] gi|330430184|gb|AEC21518.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7] Length=387 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 131/361 (37%), Positives = 180/361 (50%), Gaps = 23/361 (6%) Query 4 AAPRWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEP------------------ 45 A R I H+D+D F ASVE LR+PEL GLPV++GG G ++P Sbjct 6 APARRIAHLDMDAFYASVERLRYPELKGLPVVIGG-GSASQPTVLPDGTRLFSRLRGYVG 64 Query 46 RKVVTCASYEARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPV 105 R VVT ++YEARA GV + M + AA PEA LP + AY S+ A + + + Sbjct 65 RGVVTTSTYEARALGVFSAMGMMKAALLAPEAILLPVDFKAYRHCSQLFKAAVAGIAPHI 124 Query 106 EVWGWDEAYLAVAPGTPDDPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPA 165 E G DE Y+ ++ PDD +E+A I++ + TGLSCSIGIS NK +KIA+ L KP Sbjct 125 EDRGIDEIYIDLSK-HPDDTLELARNIKQAVFQATGLSCSIGISPNKLLSKIASELDKPD 183 Query 166 GIYQLTDANWMAIMGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRT 225 GI + + A + V + G+GPK RLA GINT+ +LA LL S FG Sbjct 184 GITIIGPGDLEARIWPLPVSKVNGIGPKANTRLAAAGINTIAELAAAPPELLQSLFGLSY 243 Query 226 ALWLLLAKGGGDTEVSAQAWVPRSRSHAVTFPRDLTC---RSEMESAVTELAQRTLNEVV 282 A WL+ G D P+S S TF RDL R + +L ++ +++ Sbjct 244 AQWLMNVARGIDNRPVVTYSEPKSISRETTFERDLHVQHDRKVLSVQFLQLCEQLEGDLL 303 Query 283 ASSRTVTRVAVTVRTATFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVR 342 + + +R F T T+ L P+ I AA L EL +RLLGVR Sbjct 304 RKGYVGRTIGIKLRFDNFRTVTRDLTLPGPTGSAQAIHHAAGQCLKRIELKHRIRLLGVR 363 Query 343 L 343 + Sbjct 364 I 364 >gi|268323380|emb|CBH36968.1| DNA polymerase IV [uncultured archaeon] Length=363 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/349 (37%), Positives = 181/349 (52%), Gaps = 17/349 (4%) Query 7 RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDP------TEPRKVVTCASYEARAYG 60 R ILHVD+D F +SVE P+L GLPVIVGG P ++ R VV+ SYEAR YG Sbjct 6 RVILHVDMDSFFSSVEEREKPKLKGLPVIVGGKITPEWEKEDSKIRGVVSTCSYEARKYG 65 Query 61 VRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPG 120 + + M L A + CP+ATFLP N Y S E++ +LR +E DEA+L V+ Sbjct 66 IHSAMALSKAYKLCPDATFLPVNMPLYKHVSGEIMNILRKYADKMEQVSIDEAFLDVSTK 125 Query 121 TPD--DPIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAI 178 D D E A+ I+K I + GL+CSIGI+ NK AKIA+ KP G+ + +A A Sbjct 126 VEDWNDAREHAKRIKKAIQVEEGLTCSIGIAPNKTIAKIASDFVKPDGLTVVEEAK--AF 183 Query 179 MGDRTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDT 238 + V+ + GVGPKT K L +GI+ + QLA D L++ G L+A G + Sbjct 184 LAPLDVKNIPGVGPKTDKILRMMGIDQIGQLASGDVQKLVAAIGQSGKRLHLVANGIDKS 243 Query 239 EVSAQAWVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTA 298 EV + WV +S S TF D S + V LA+ N + + V++ V+ Sbjct 244 EVE-EKWVRKSLSRERTFVNDTRDASVLTKCVDALAEEVYNAMTDAGFVFKTVSIKVKFE 302 Query 299 TFYTRTKIRKLQAPSTDPDVITAAARHVLDLFELD----RPVRLLGVRL 343 F T+ + L+ D + A ++ EL+ + RL+GVR+ Sbjct 303 DFTIATRAKTLKTYHCDLSTLKRTANELMT--ELNNAKSKKKRLIGVRI 349 Lambda K H 0.319 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 636071322808 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40