BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3062
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610199|ref|NP_217578.1| ATP-dependent DNA ligase [Mycobacte... 998 0.0
gi|15842630|ref|NP_337667.1| ATP-dependent DNA ligase [Mycobacte... 994 0.0
gi|289448741|ref|ZP_06438485.1| ATP-dependent DNA ligase ligB [M... 992 0.0
gi|306785913|ref|ZP_07424235.1| ATP-dependent DNA ligase ligB [M... 991 0.0
gi|339633070|ref|YP_004724712.1| ATP-dependent DNA ligase LIGB (... 990 0.0
gi|340628054|ref|YP_004746506.1| putative ATP-dependent DNA liga... 989 0.0
gi|339299510|gb|AEJ51620.1| ATP-dependent DNA ligase [Mycobacter... 984 0.0
gi|308377212|ref|ZP_07441515.2| ATP-dependent DNA ligase ligB [M... 973 0.0
gi|289571267|ref|ZP_06451494.1| ATP-dependent DNA ligase ligB [M... 809 0.0
gi|224487996|sp|B2HHE1.2|DNLI_MYCMM RecName: Full=Probable DNA l... 759 0.0
gi|254820765|ref|ZP_05225766.1| ATP-dependent DNA ligase [Mycoba... 758 0.0
gi|240171819|ref|ZP_04750478.1| ATP-dependent DNA ligase [Mycoba... 754 0.0
gi|342860897|ref|ZP_08717546.1| ATP-dependent DNA ligase [Mycoba... 752 0.0
gi|118618728|ref|YP_907060.1| ATP-dependent DNA ligase [Mycobact... 746 0.0
gi|183981637|ref|YP_001849928.1| ATP-dependent DNA ligase LigB [... 746 0.0
gi|41409215|ref|NP_962051.1| ATP-dependent DNA ligase [Mycobacte... 733 0.0
gi|336459238|gb|EGO38183.1| ATP-dependent DNA ligase I [Mycobact... 731 0.0
gi|118463279|ref|YP_883098.1| ATP-dependent DNA ligase [Mycobact... 717 0.0
gi|108798767|ref|YP_638964.1| ATP-dependent DNA ligase [Mycobact... 689 0.0
gi|118471939|ref|YP_886629.1| ATP-dependent DNA ligase [Mycobact... 686 0.0
gi|120403019|ref|YP_952848.1| ATP-dependent DNA ligase [Mycobact... 662 0.0
gi|145224900|ref|YP_001135578.1| ATP-dependent DNA ligase [Mycob... 658 0.0
gi|296171131|ref|ZP_06852583.1| possible ATP-dependent DNA ligas... 569 5e-160
gi|254776357|ref|ZP_05217873.1| ATP-dependent DNA ligase [Mycoba... 557 2e-156
gi|296270402|ref|YP_003653034.1| DNA ligase I, ATP-dependent Dnl... 550 3e-154
gi|271968417|ref|YP_003342613.1| ATP-dependent DNA ligase [Strep... 541 1e-151
gi|86160576|ref|YP_467361.1| ATP-dependent DNA ligase [Anaeromyx... 514 2e-143
gi|220919391|ref|YP_002494695.1| ATP-dependent DNA ligase [Anaer... 514 2e-143
gi|291441032|ref|ZP_06580422.1| DNA ligase [Streptomyces ghanaen... 492 7e-137
gi|345008057|ref|YP_004810411.1| DNA ligase [Streptomyces violac... 491 2e-136
gi|326331744|ref|ZP_08198032.1| DNA ligase [Nocardioidaceae bact... 488 1e-135
gi|302549851|ref|ZP_07302193.1| DNA polymerase LigD, ligase doma... 485 7e-135
gi|294628113|ref|ZP_06706673.1| DNA ligase [Streptomyces sp. e14... 485 8e-135
gi|296128790|ref|YP_003636040.1| DNA ligase I, ATP-dependent Dnl... 482 8e-134
gi|284031333|ref|YP_003381264.1| DNA ligase I, ATP-dependent Dnl... 481 2e-133
gi|256390625|ref|YP_003112189.1| ATP-dependent DNA ligase [Caten... 481 2e-133
gi|229818773|ref|YP_002880299.1| ATP-dependent DNA ligase [Beute... 480 2e-133
gi|337764695|emb|CCB73404.1| putative DNA ligase [Streptomyces c... 480 2e-133
gi|302561946|ref|ZP_07314288.1| DNA ligase [Streptomyces griseof... 477 3e-132
gi|289773096|ref|ZP_06532474.1| ATP-dependent DNA ligase [Strept... 476 5e-132
gi|21219712|ref|NP_625491.1| ATP-dependent DNA ligase [Streptomy... 474 1e-131
gi|330469704|ref|YP_004407447.1| ATP-dependent DNA ligase [Verru... 474 2e-131
gi|332670278|ref|YP_004453286.1| DNA ligase I, ATP-dependent Dnl... 473 3e-131
gi|297158896|gb|ADI08608.1| ATP-dependent DNA ligase [Streptomyc... 472 6e-131
gi|111018647|ref|YP_701619.1| ATP-dependent DNA ligase [Rhodococ... 472 9e-131
gi|152968259|ref|YP_001364043.1| ATP-dependent DNA ligase [Kineo... 469 7e-130
gi|226360758|ref|YP_002778536.1| ATP-dependent DNA ligase [Rhodo... 468 1e-129
gi|297190850|ref|ZP_06908248.1| ATP-dependent DNA ligase [Strept... 468 2e-129
gi|289751736|ref|ZP_06511114.1| ATP-dependent DNA ligase ligB [M... 467 2e-129
gi|29833678|ref|NP_828312.1| ATP-dependent DNA ligase [Streptomy... 467 3e-129
>gi|15610199|ref|NP_217578.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Rv]
gi|148662915|ref|YP_001284438.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra]
gi|306777368|ref|ZP_07415705.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu001]
9 more sequence titles
Length=507
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/507 (99%), Positives = 507/507 (100%), Gaps = 0/507 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW
Sbjct 1 MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR
Sbjct 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV
Sbjct 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
Query 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL
Sbjct 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
Query 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF
Sbjct 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
Query 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA
Sbjct 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
Query 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM
Sbjct 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
Query 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL
Sbjct 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
Query 481 RFARVVRYRADKDPAEADTIDAVRALY 507
RFARVVRYRADKDPAEADTIDAVRALY
Sbjct 481 RFARVVRYRADKDPAEADTIDAVRALY 507
>gi|15842630|ref|NP_337667.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis CDC1551]
gi|31794241|ref|NP_856734.1| ATP-dependent DNA ligase [Mycobacterium bovis AF2122/97]
gi|121638947|ref|YP_979171.1| ATP-dependent DNA ligase [Mycobacterium bovis BCG str. Pasteur
1173P2]
50 more sequence titles
Length=507
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/507 (99%), Positives = 506/507 (99%), Gaps = 0/507 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW
Sbjct 1 MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLPPPAPQPALTVTGVDATLSKIGTL GKGSQAQRAALVAELFSAATEAEQTFLLR
Sbjct 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV
Sbjct 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
Query 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL
Sbjct 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
Query 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF
Sbjct 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
Query 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA
Sbjct 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
Query 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM
Sbjct 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
Query 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL
Sbjct 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
Query 481 RFARVVRYRADKDPAEADTIDAVRALY 507
RFARVVRYRADKDPAEADTIDAVRALY
Sbjct 481 RFARVVRYRADKDPAEADTIDAVRALY 507
>gi|289448741|ref|ZP_06438485.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis CPHL_A]
gi|289421699|gb|EFD18900.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis CPHL_A]
Length=507
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/507 (99%), Positives = 505/507 (99%), Gaps = 0/507 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW
Sbjct 1 MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLPPPAPQPALTVTGVDATLSKIGTL GKGSQAQRAALVAELFSAATEAEQTFLLR
Sbjct 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV
Sbjct 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
Query 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTR LDDVTARL
Sbjct 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRRLDDVTARL 240
Query 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF
Sbjct 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
Query 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA
Sbjct 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
Query 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM
Sbjct 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
Query 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL
Sbjct 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
Query 481 RFARVVRYRADKDPAEADTIDAVRALY 507
RFARVVRYRADKDPAEADTIDAVRALY
Sbjct 481 RFARVVRYRADKDPAEADTIDAVRALY 507
>gi|306785913|ref|ZP_07424235.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu003]
gi|306799004|ref|ZP_07437306.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu006]
gi|308329437|gb|EFP18288.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu003]
gi|308340753|gb|EFP29604.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu006]
Length=507
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/507 (99%), Positives = 505/507 (99%), Gaps = 0/507 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW
Sbjct 1 MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLPPPAPQPALTVTGVDATLSKIGTL GKGSQAQRAALVAELFSAATEAEQTFLLR
Sbjct 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV
Sbjct 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
Query 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL
Sbjct 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
Query 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
PEVVEATLALPVRDLVADGEAIA CPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF
Sbjct 241 PEVVEATLALPVRDLVADGEAIAPCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
Query 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA
Sbjct 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
Query 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM
Sbjct 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
Query 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL
Sbjct 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
Query 481 RFARVVRYRADKDPAEADTIDAVRALY 507
RFARVVRYRADKDPAEADTIDAVRALY
Sbjct 481 RFARVVRYRADKDPAEADTIDAVRALY 507
>gi|339633070|ref|YP_004724712.1| ATP-dependent DNA ligase LIGB (polydeoxyribonucleotide synthase
[ATP]) [Mycobacterium africanum GM041182]
gi|339332426|emb|CCC28139.1| putative ATP-dependent DNA ligase LIGB (polydeoxyribonucleotide
synthase [ATP]) [Mycobacterium africanum GM041182]
Length=507
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/507 (99%), Positives = 505/507 (99%), Gaps = 0/507 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW
Sbjct 1 MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLPPPAPQPALTVTGVDATLSKIGTL GKGSQAQRAALVAELFSAATEAEQTFLLR
Sbjct 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV
Sbjct 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
Query 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL
Sbjct 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
Query 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF
Sbjct 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
Query 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA
Sbjct 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
Query 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
KAPAARYLAGRRGAGWLKVKPV TLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM
Sbjct 361 KAPAARYLAGRRGAGWLKVKPVPTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
Query 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL
Sbjct 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
Query 481 RFARVVRYRADKDPAEADTIDAVRALY 507
RFARVVRYRADKDPAEADTIDAVRALY
Sbjct 481 RFARVVRYRADKDPAEADTIDAVRALY 507
>gi|340628054|ref|YP_004746506.1| putative ATP-dependent DNA ligase [Mycobacterium canettii CIPT
140010059]
gi|340006244|emb|CCC45418.1| putative ATP-dependent DNA ligase LIGB (polydeoxyribonucleotide
synthase [ATP]) (polynucleotide ligase [ATP]) (sealase) (DNA
repair protein) (DNA joinase) [Mycobacterium canettii CIPT
140010059]
Length=507
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/507 (99%), Positives = 505/507 (99%), Gaps = 0/507 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQL+TIIVSWLSGELPQRHIGVGW
Sbjct 1 MLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLITIIVSWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLPPPAPQPALTVTGVDATL+KIGTL GKGSQAQRAALVAELFSAATEAEQTFLLR
Sbjct 61 AALRSLPPPAPQPALTVTGVDATLAKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRV 180
LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGG+LAAAAAAGLSGAALDTFTLRV
Sbjct 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGNLAAAAAAGLSGAALDTFTLRV 180
Query 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL
Sbjct 181 GRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARL 240
Query 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFF 300
PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVA ARATQPLSVFFF
Sbjct 241 PEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAGARATQPLSVFFF 300
Query 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA
Sbjct 301 DILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMA 360
Query 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM
Sbjct 361 KAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVM 420
Query 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL
Sbjct 421 VGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLAL 480
Query 481 RFARVVRYRADKDPAEADTIDAVRALY 507
RFARVVRYRADKDPAEADTIDAVRALY
Sbjct 481 RFARVVRYRADKDPAEADTIDAVRALY 507
>gi|339299510|gb|AEJ51620.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis CCDC5180]
Length=502
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/502 (99%), Positives = 501/502 (99%), Gaps = 0/502 (0%)
Query 6 VAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRS 65
+AITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRS
Sbjct 1 MAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRS 60
Query 66 LPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGE 125
LPPPAPQPALTVTGVDATLSKIGTL GKGSQAQRAALVAELFSAATEAEQTFLLRLLGGE
Sbjct 61 LPPPAPQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGE 120
Query 126 LRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIG 185
LRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIG
Sbjct 121 LRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIG 180
Query 186 PMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVE 245
PMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVE
Sbjct 181 PMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVE 240
Query 246 ATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHR 305
ATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHR
Sbjct 241 ATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHR 300
Query 306 DGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAA 365
DGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAA
Sbjct 301 DGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAA 360
Query 366 RYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTF 425
RYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTF
Sbjct 361 RYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTF 420
Query 426 KGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARV 485
KGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARV
Sbjct 421 KGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARV 480
Query 486 VRYRADKDPAEADTIDAVRALY 507
VRYRADKDPAEADTIDAVRALY
Sbjct 481 VRYRADKDPAEADTIDAVRALY 502
>gi|308377212|ref|ZP_07441515.2| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu008]
gi|308348568|gb|EFP37419.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis SUMu008]
Length=497
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/497 (99%), Positives = 495/497 (99%), Gaps = 0/497 (0%)
Query 11 MDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPA 70
MDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPA
Sbjct 1 MDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPA 60
Query 71 PQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGA 130
PQPALTVTGVDATLSKIGTL GKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGA
Sbjct 61 PQPALTVTGVDATLSKIGTLSGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGA 120
Query 131 KGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIGPMLAQ 190
KGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIGPMLAQ
Sbjct 121 KGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIGPMLAQ 180
Query 191 TATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATLAL 250
TATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATLAL
Sbjct 181 TATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATLAL 240
Query 251 PVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDL 310
PVRDLVADGEAIA CPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDL
Sbjct 241 PVRDLVADGEAIAPCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDL 300
Query 311 LEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAG 370
LEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAG
Sbjct 301 LEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAG 360
Query 371 RRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTD 430
RRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTD
Sbjct 361 RRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTD 420
Query 431 AMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRA 490
AMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRA
Sbjct 421 AMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRA 480
Query 491 DKDPAEADTIDAVRALY 507
DKDPAEADTIDAVRALY
Sbjct 481 DKDPAEADTIDAVRALY 497
>gi|289571267|ref|ZP_06451494.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis T17]
gi|289545021|gb|EFD48669.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis T17]
Length=465
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/466 (98%), Positives = 456/466 (98%), Gaps = 3/466 (0%)
Query 44 VSWLSGELPQRHIGVGWAALRSLPPPAPQPALTVTGVDAT--LSKIGTLPGKGSQAQRAA 101
+SWLSGELPQRHIGVGWAALRSLPPPAPQ V G + T LSKIGTL GKGSQAQRAA
Sbjct 1 MSWLSGELPQRHIGVGWAALRSLPPPAPQ-PALVAGDEPTPPLSKIGTLSGKGSQAQRAA 59
Query 102 LVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLA 161
LVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLA
Sbjct 60 LVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLA 119
Query 162 AAAAAGLSGAALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHR 221
AAAAAGLSGAALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHR
Sbjct 120 AAAAAGLSGAALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHR 179
Query 222 ANDQVRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFG 281
ANDQVRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFG
Sbjct 180 ANDQVRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFG 239
Query 282 RSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPT 341
RSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPT
Sbjct 240 RSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPT 299
Query 342 DAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRG 401
DAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRG
Sbjct 300 DAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRG 359
Query 402 KLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVV 461
KLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVV
Sbjct 360 KLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVV 419
Query 462 EVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
EVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY
Sbjct 420 EVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 465
>gi|224487996|sp|B2HHE1.2|DNLI_MYCMM RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
Length=513
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/513 (78%), Positives = 433/513 (85%), Gaps = 6/513 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL D+A TS++V TSSRL KV RIA LL AAPD +LV I+V+WLSGEL QR IGVGW
Sbjct 1 MLLIDIASTSLNVGGTSSRLAKVERIAELLRAAAPDPELVAIVVAWLSGELRQRQIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRSLP A PALTVTG DA S+IG + GKGS A+R L+ LF+AATE EQ FL+R
Sbjct 61 AALRSLPAAAGSPALTVTGTDAAFSEIGAVSGKGSAARRRELITRLFAAATETEQAFLVR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAA------LD 174
LL GELRQGA GIM DAVA+AA +PA VQRAAMLGGDL AAA L+ + LD
Sbjct 121 LLSGELRQGALAGIMVDAVARAAEVPATAVQRAAMLGGDLPTVAAACLAAGSSGAAGALD 180
Query 175 TFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLD 234
+FTLRVGRPIGPMLAQ+A S+ ALERHGG TIFEAKLDGARVQIHR D+V +YTRSLD
Sbjct 181 SFTLRVGRPIGPMLAQSAGSITVALERHGGATIFEAKLDGARVQIHRTGDEVTVYTRSLD 240
Query 235 DVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQP 294
DVTARLPEVV+ATLALPV DLVADGEAIAL PD RP RFQVTASRFGRSV+VAAA+A QP
Sbjct 241 DVTARLPEVVQATLALPVSDLVADGEAIALQPDGRPHRFQVTASRFGRSVNVAAAQAKQP 300
Query 295 LSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAG 354
LSVFFFDILHRDG DLL+APTT+RLAALDA+VPARHRVDRL T+D A +FL ATLAAG
Sbjct 301 LSVFFFDILHRDGRDLLDAPTTDRLAALDAVVPARHRVDRLTTADAAAATDFLRATLAAG 360
Query 355 HEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPA 414
HEGVMAK+P A YLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARD A
Sbjct 361 HEGVMAKSPTAPYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDAA 420
Query 415 TGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRY 474
TG FVM+GKTFKGMTDAMLDWQT RF E+AVG TDGYVV LRPEQVVEVA DGVQ SSRY
Sbjct 421 TGEFVMLGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVALRPEQVVEVAFDGVQASSRY 480
Query 475 PGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
PGGLALRFARVVRYR DK PA+ADTID VRALY
Sbjct 481 PGGLALRFARVVRYRDDKGPADADTIDTVRALY 513
>gi|254820765|ref|ZP_05225766.1| ATP-dependent DNA ligase [Mycobacterium intracellulare ATCC 13950]
Length=509
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/509 (83%), Positives = 446/509 (88%), Gaps = 2/509 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DVA S DV +TSSRL KVA IA LL RAAPD LV I+VSWLSGEL QR IGVGW
Sbjct 1 MLLLDVAKASTDVGSTSSRLRKVAHIADLLARAAPDPALVMIVVSWLSGELRQRQIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRS PPPA LTV VDAT S+IG + GKG+QA+RAAL+ LF+AATEAEQTFLLR
Sbjct 61 AALRSRPPPASHATLTVGAVDATFSEIGAVSGKGAQARRAALLTTLFAAATEAEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LLGGELRQGA GIMADAVA+AAG+PAA VQRAAMLGGDL A AAA LSG AAL FTL
Sbjct 121 LLGGELRQGALAGIMADAVAKAAGIPAAAVQRAAMLGGDLPAVAAAALSGEPAALQAFTL 180
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
RVGRP+GPMLAQTA SV DA+ERHGG IFEAKLDGARVQIHR+ DQV +YTRSLDDVTA
Sbjct 181 RVGRPVGPMLAQTAPSVADAIERHGGRAIFEAKLDGARVQIHRSGDQVTVYTRSLDDVTA 240
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
R+PEVVEATLALPV DL+ADGEAIAL PDNRPQRFQVTASRFGRSVDVAAA A QPLSVF
Sbjct 241 RVPEVVEATLALPVNDLIADGEAIALRPDNRPQRFQVTASRFGRSVDVAAAVAAQPLSVF 300
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFDILHRDG DLL+APTT+RLAALDALVP RVDRL+TSDP +A FLDATLAAGHEGV
Sbjct 301 FFDILHRDGVDLLDAPTTDRLAALDALVPPAQRVDRLLTSDPVEAGAFLDATLAAGHEGV 360
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
MAKAP A+Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDP +G F
Sbjct 361 MAKAPDAQYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPDSGEF 420
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VMVGKTFKGMTDAMLDWQT RF ++A+G TDGYVV +RPEQVVEVALDGVQ+SSRYPGGL
Sbjct 421 VMVGKTFKGMTDAMLDWQTARFTDLAIGGTDGYVVHVRPEQVVEVALDGVQKSSRYPGGL 480
Query 479 ALRFARVVRYRADKDPAEADTIDAVRALY 507
ALRFARVVRYR DK PAEADTIDAVRALY
Sbjct 481 ALRFARVVRYRDDKGPAEADTIDAVRALY 509
>gi|240171819|ref|ZP_04750478.1| ATP-dependent DNA ligase [Mycobacterium kansasii ATCC 12478]
Length=509
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/509 (82%), Positives = 441/509 (87%), Gaps = 2/509 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DVA TS+DV ATSSRL+KV RIA LL RAAPD +LV I+V+WLSGELPQRHIGVGW
Sbjct 1 MLLLDVATTSLDVGATSSRLSKVERIADLLRRAAPDPELVAILVAWLSGELPQRHIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
A+LRSLPPPA LTVTGVDA S+IG G GSQA+RA LV+ELFSAATE+EQTFL R
Sbjct 61 ASLRSLPPPAGHATLTVTGVDAAFSEIGATSGSGSQARRAQLVSELFSAATESEQTFLFR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDL--AAAAAAGLSGAALDTFTL 178
LL GELRQGA GIM DAVA+AA + A+ VQRAAMLGGDL AAA AALD FTL
Sbjct 121 LLSGELRQGALTGIMTDAVAKAAAIRASAVQRAAMLGGDLPAVAAAGLTGGAAALDAFTL 180
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
RVGRP+GPMLAQTAT V DALERH GTTIFEAKLDGARVQIHRA D V +YTRSLDDVTA
Sbjct 181 RVGRPVGPMLAQTATGVTDALERHYGTTIFEAKLDGARVQIHRAGDHVTVYTRSLDDVTA 240
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVVEATLALPV +L+ADGEAIA PD+RP RFQVTASRFGRSVDVAAARATQPLSVF
Sbjct 241 RLPEVVEATLALPVHELIADGEAIAWRPDHRPHRFQVTASRFGRSVDVAAARATQPLSVF 300
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFDILHRDG DLL+APTTERLA LDA+VP RHRVDRLITSD AA FLDATLAAGHEGV
Sbjct 301 FFDILHRDGDDLLDAPTTERLAVLDAVVPVRHRVDRLITSDAAAAAAFLDATLAAGHEGV 360
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
MAKAP A Y AGRRGAGWLKVKPVHTLDLVVL VEWGSGRRRGKLSNIHLGARDPA+G +
Sbjct 361 MAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLGVEWGSGRRRGKLSNIHLGARDPASGKY 420
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VMVGKTFKGMTDAMLDWQT RF +A+G TDGYVVQLRPEQVVEVA+DGVQ SSRYPGG+
Sbjct 421 VMVGKTFKGMTDAMLDWQTARFTGLAIGGTDGYVVQLRPEQVVEVAVDGVQGSSRYPGGV 480
Query 479 ALRFARVVRYRADKDPAEADTIDAVRALY 507
ALRFARV+RYR DK P EADTID VRALY
Sbjct 481 ALRFARVLRYRDDKSPDEADTIDTVRALY 509
>gi|342860897|ref|ZP_08717546.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035]
gi|342131341|gb|EGT84611.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035]
Length=509
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/509 (81%), Positives = 444/509 (88%), Gaps = 2/509 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DVA TS DV +TSSRLTKVARIA LL RAAPD +V +IVSWLSGEL QR IGVGW
Sbjct 1 MLLIDVATTSTDVGSTSSRLTKVARIAGLLTRAAPDAAVVAVIVSWLSGELRQRQIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRS PPPA P+LTV GVDA S+IG + GKG+QA+RAAL+ LF+AAT+ EQTFL+R
Sbjct 61 AALRSRPPPATDPSLTVAGVDAAFSEIGAVSGKGAQARRAALLDALFAAATDTEQTFLVR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDL--AAAAAAGLSGAALDTFTL 178
LLGGELRQGA GIM DAVA+AAG+P A VQRAAMLGGDL AAAA + +ALD FTL
Sbjct 121 LLGGELRQGALAGIMTDAVAKAAGIPPAAVQRAAMLGGDLPAVAAAALSGAASALDAFTL 180
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
RVGRP+GPMLAQTAT V DA+ERHGG T+FEAKLDGARVQIHRA D+V +YTRSLDDVTA
Sbjct 181 RVGRPVGPMLAQTATGVADAIERHGGPTMFEAKLDGARVQIHRAGDEVTVYTRSLDDVTA 240
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVVEATLALPV +L+ADGEAIAL PDNRP RFQVTASRFGRSVD+ AA A Q LSVF
Sbjct 241 RLPEVVEATLALPVDNLIADGEAIALRPDNRPHRFQVTASRFGRSVDIVAALAAQRLSVF 300
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFDILHRDG DL++APTTERLAALDALVP RVDRL+T+DP A FLDATLAAGHEGV
Sbjct 301 FFDILHRDGVDLIDAPTTERLAALDALVPPAQRVDRLLTADPAQAGAFLDATLAAGHEGV 360
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
MAKAP A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPA G F
Sbjct 361 MAKAPGAPYAAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAGGEF 420
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
+MVGKTFKGMTDAMLDWQT RF E+AVG TDGYVV++RPEQVVE+ALDGVQ+SSRYPGGL
Sbjct 421 IMVGKTFKGMTDAMLDWQTARFSELAVGGTDGYVVRVRPEQVVEIALDGVQKSSRYPGGL 480
Query 479 ALRFARVVRYRADKDPAEADTIDAVRALY 507
ALRFARVVRYR DK PAEADTIDAVRALY
Sbjct 481 ALRFARVVRYRDDKGPAEADTIDAVRALY 509
>gi|118618728|ref|YP_907060.1| ATP-dependent DNA ligase [Mycobacterium ulcerans Agy99]
gi|224487903|sp|A0PTC0.1|DNLI_MYCUA RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|118570838|gb|ABL05589.1| ATP-dependent DNA ligase LigB [Mycobacterium ulcerans Agy99]
Length=513
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/513 (77%), Positives = 429/513 (84%), Gaps = 6/513 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL D+A TS++V TSSRL KVARIA L AAPD +LV I+V+WLSGEL QR IGVGW
Sbjct 1 MLLIDIASTSLNVGGTSSRLAKVARIAEPLRAAAPDPELVAIVVAWLSGELRQRQIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
A LRS P A PALTVTG DA S+IG + GKGS A+R L+ LF+A+TE EQ FL+R
Sbjct 61 ATLRSPPAAAGSPALTVTGTDAAFSEIGAVSGKGSAARRRELITRLFAASTETEQAFLVR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAA------LD 174
LL GELRQGA GIM DAVA+AA +PA VQRAAMLGGDL AAA L+ + LD
Sbjct 121 LLSGELRQGALAGIMVDAVARAAEVPATAVQRAAMLGGDLPTVAAACLAAGSSGAAGALD 180
Query 175 TFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLD 234
+FTLRVGRPIGPMLAQ+A S+ DALERHGG TIFEAKLDGARVQIHR D+V +YTRSLD
Sbjct 181 SFTLRVGRPIGPMLAQSAGSITDALERHGGATIFEAKLDGARVQIHRTGDEVTVYTRSLD 240
Query 235 DVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQP 294
DVTARLPEVV+ATLALPV DLVADGEAIAL PD RP RFQVTASRFGRSV+VAAA+A QP
Sbjct 241 DVTARLPEVVQATLALPVSDLVADGEAIALQPDGRPHRFQVTASRFGRSVNVAAAQAKQP 300
Query 295 LSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAG 354
LSVFF DILHRDG DLL+APTT+RLAALDA+VPARHRVDRL T+D A +FL ATLAAG
Sbjct 301 LSVFFSDILHRDGRDLLDAPTTDRLAALDAVVPARHRVDRLTTADAAAATDFLRATLAAG 360
Query 355 HEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPA 414
HEGVMAK+P A YLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNI LGARD A
Sbjct 361 HEGVMAKSPTAPYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIPLGARDAA 420
Query 415 TGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRY 474
TG FVM+GKTFK MTDAMLDWQT RF E+AVG TDGYVV LRPEQVVEVA DGVQ SSRY
Sbjct 421 TGEFVMLGKTFKSMTDAMLDWQTARFTELAVGGTDGYVVALRPEQVVEVAFDGVQASSRY 480
Query 475 PGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
PGGLALRFARVVRYR DK PA+ADTID VRALY
Sbjct 481 PGGLALRFARVVRYRDDKGPADADTIDTVRALY 513
>gi|183981637|ref|YP_001849928.1| ATP-dependent DNA ligase LigB [Mycobacterium marinum M]
gi|183174963|gb|ACC40073.1| ATP-dependent DNA ligase LigB [Mycobacterium marinum M]
Length=501
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/501 (79%), Positives = 423/501 (85%), Gaps = 6/501 (1%)
Query 13 VAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPAPQ 72
+ TSSRL KV RIA LL AAPD +LV I+V+WLSGEL QR IGVGWAALRSLP A
Sbjct 1 MGGTSSRLAKVERIAELLRAAAPDPELVAIVVAWLSGELRQRQIGVGWAALRSLPAAAGS 60
Query 73 PALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGAKG 132
PALTVTG DA S+IG + GKGS A+R L+ LF+AATE EQ FL+RLL GELRQGA
Sbjct 61 PALTVTGTDAAFSEIGAVSGKGSAARRRELITRLFAAATETEQAFLVRLLSGELRQGALA 120
Query 133 GIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAA------LDTFTLRVGRPIGP 186
GIM DAVA+AA +PA VQRAAMLGGDL AAA L+ + LD+FTLRVGRPIGP
Sbjct 121 GIMVDAVARAAEVPATAVQRAAMLGGDLPTVAAACLAAGSSGAAGALDSFTLRVGRPIGP 180
Query 187 MLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEA 246
MLAQ+A S+ ALERHGG TIFEAKLDGARVQIHR D+V +YTRSLDDVTARLPEVV+A
Sbjct 181 MLAQSAGSITVALERHGGATIFEAKLDGARVQIHRTGDEVTVYTRSLDDVTARLPEVVQA 240
Query 247 TLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHRD 306
TLALPV DLVADGEAIAL PD RP RFQVTASRFGRSV+VAAA+A QPLSVFFFDILHRD
Sbjct 241 TLALPVSDLVADGEAIALQPDGRPHRFQVTASRFGRSVNVAAAQAKQPLSVFFFDILHRD 300
Query 307 GTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAAR 366
G DLL+APTT+RLAALDA+VPARHRVDRL T+D A +FL ATLAAGHEGVMAK+P A
Sbjct 301 GRDLLDAPTTDRLAALDAVVPARHRVDRLTTADAAAATDFLRATLAAGHEGVMAKSPTAP 360
Query 367 YLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTFK 426
YLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARD ATG FVM+GKTFK
Sbjct 361 YLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDAATGEFVMLGKTFK 420
Query 427 GMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARVV 486
GMTDAMLDWQT RF E+AVG TDGYVV LRPEQVVEVA DGVQ SSRYPGGLALRFARVV
Sbjct 421 GMTDAMLDWQTARFTELAVGGTDGYVVALRPEQVVEVAFDGVQASSRYPGGLALRFARVV 480
Query 487 RYRADKDPAEADTIDAVRALY 507
RYR DK PA+ADTID VRALY
Sbjct 481 RYRDDKGPADADTIDTVRALY 501
>gi|41409215|ref|NP_962051.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|81413423|sp|Q73V97.1|DNLI_MYCPA RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|41398035|gb|AAS05665.1| LigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length=519
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/509 (81%), Positives = 437/509 (86%), Gaps = 2/509 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
VLL DVA S DV T SRLTKVARIA LL RAAP+ LV I+VSWLSGEL QR IGVGW
Sbjct 11 VLLFDVATASADVGGTPSRLTKVARIADLLRRAAPNAALVAIVVSWLSGELRQRQIGVGW 70
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRS PP A P LTV VDA ++IG + GKG+QA+RAAL+ LF+AATE EQTFLLR
Sbjct 71 AALRSRPPAAAHPTLTVVAVDAAFAEIGAVAGKGAQARRAALLNALFAAATETEQTFLLR 130
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LLGGELRQGA GIMADAVA+AAG+PAA VQRAAMLGGDL A AAA LSG +ALD FTL
Sbjct 131 LLGGELRQGALAGIMADAVARAAGIPAAAVQRAAMLGGDLPAVAAAALSGEASALDAFTL 190
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
RVGRP+ PMLAQTA V A+ERHGG IFEAKLDGARVQIHRA DQV +YTRSLDDVTA
Sbjct 191 RVGRPVAPMLAQTAAGVAQAIERHGGQAIFEAKLDGARVQIHRAGDQVTVYTRSLDDVTA 250
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVV ATLALPV L+ADGEAIAL PDN PQRFQVTASRFGRS+DVAAA A QPLSVF
Sbjct 251 RLPEVVTATLALPVEALIADGEAIALRPDNSPQRFQVTASRFGRSLDVAAAVAAQPLSVF 310
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FDILH DG DLL+APTT+RLAALDALVP RVDRL+T+DP A FL+ATLAAGHEGV
Sbjct 311 IFDILHCDGIDLLDAPTTDRLAALDALVPPAQRVDRLLTADPDAAGRFLEATLAAGHEGV 370
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
MAKAP A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATG F
Sbjct 371 MAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGEF 430
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VMVGKTFKGMTDAMLDWQT RF E+AVG TDGYVV++RPEQVVEVA+DGVQ+SSRYPGGL
Sbjct 431 VMVGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVRVRPEQVVEVAVDGVQKSSRYPGGL 490
Query 479 ALRFARVVRYRADKDPAEADTIDAVRALY 507
ALRFARV+RYR DK PAEADTIDAVRALY
Sbjct 491 ALRFARVLRYRDDKGPAEADTIDAVRALY 519
>gi|336459238|gb|EGO38183.1| ATP-dependent DNA ligase I [Mycobacterium avium subsp. paratuberculosis
S397]
Length=509
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/509 (81%), Positives = 437/509 (86%), Gaps = 2/509 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DVA S DV T SRLTKVARIA LL RAAP+ LV I+VSWLSGEL QR IGVGW
Sbjct 1 MLLFDVATASADVGGTPSRLTKVARIADLLRRAAPNAALVAIVVSWLSGELRQRQIGVGW 60
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRS PP A P LTV VDA ++IG + GKG+QA+RAAL+ LF+AATE EQTFLLR
Sbjct 61 AALRSRPPAAAHPTLTVVAVDAAFAEIGAVAGKGAQARRAALLNALFAAATETEQTFLLR 120
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LLGGELRQGA GIMADAVA+AAG+PAA VQRAAMLGGDL A AAA LSG +ALD FTL
Sbjct 121 LLGGELRQGALAGIMADAVARAAGIPAAAVQRAAMLGGDLPAVAAAALSGEASALDAFTL 180
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
RVGRP+ PMLAQTA V A+ERHGG IFEAKLDGARVQIHRA DQV +YTRSLDDVTA
Sbjct 181 RVGRPVAPMLAQTAAGVAQAIERHGGQAIFEAKLDGARVQIHRAGDQVTVYTRSLDDVTA 240
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVV ATLALPV L+ADGEAIAL PDN PQRFQVTASRFGRS+DVAAA A QPLSVF
Sbjct 241 RLPEVVTATLALPVEALIADGEAIALRPDNSPQRFQVTASRFGRSLDVAAAVAAQPLSVF 300
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FDILH DG DLL+APTT+RLAALDALVP RVDRL+T+DP A FL+ATLAAGHEGV
Sbjct 301 IFDILHCDGIDLLDAPTTDRLAALDALVPPAQRVDRLLTADPDAAGRFLEATLAAGHEGV 360
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
MAKAP A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATG F
Sbjct 361 MAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGEF 420
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VMVGKTFKGMTDAMLDWQT RF E+AVG TDGYVV++RPEQVVEVA+DGVQ+SSRYPGGL
Sbjct 421 VMVGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVRVRPEQVVEVAVDGVQKSSRYPGGL 480
Query 479 ALRFARVVRYRADKDPAEADTIDAVRALY 507
ALRFARV+RYR DK PAEADTIDAVRALY
Sbjct 481 ALRFARVLRYRDDKGPAEADTIDAVRALY 509
>gi|118463279|ref|YP_883098.1| ATP-dependent DNA ligase [Mycobacterium avium 104]
gi|224487893|sp|A0QJL0.1|DNLI_MYCA1 RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|118164566|gb|ABK65463.1| DNA ligase [Mycobacterium avium 104]
Length=526
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/516 (80%), Positives = 438/516 (85%), Gaps = 9/516 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
VLL DVA S DV T SRLTKVARIA LL RAAPD LV I+VSWLSGEL QR IGVGW
Sbjct 11 VLLFDVATASADVGGTPSRLTKVARIADLLRRAAPDAALVAIVVSWLSGELRQRQIGVGW 70
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AALRS PP A P LTV VDA ++IG + GKG+QA+RAAL+ LF+AATE EQTFLLR
Sbjct 71 AALRSRPPAAAHPTLTVVAVDAAFAEIGAVAGKGAQARRAALLNALFAAATETEQTFLLR 130
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAA-------AAAAGLSG--A 171
LLGGELRQGA GIMADAVA+AAG+PAA VQRAAMLGGDL A AA LSG +
Sbjct 131 LLGGELRQGALAGIMADAVARAAGIPAAAVQRAAMLGGDLPAVAAAALSGEAAALSGEAS 190
Query 172 ALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTR 231
ALD FTLRVGRP+ PMLAQTA V +A+ERHGG IFEAKLDGARVQIHRA DQV +YTR
Sbjct 191 ALDAFTLRVGRPVAPMLAQTAAGVAEAIERHGGQAIFEAKLDGARVQIHRAGDQVTVYTR 250
Query 232 SLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARA 291
SLDDVTARLPEVV ATLALPV L+ADGEAIAL PDN PQRFQVTASRFGRSVDVAAA A
Sbjct 251 SLDDVTARLPEVVTATLALPVEALIADGEAIALRPDNSPQRFQVTASRFGRSVDVAAAVA 310
Query 292 TQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATL 351
QPLSVFFFDILH DG DLL+APTT+RLAALDALVP RVD+L+T+DP A FL+ATL
Sbjct 311 AQPLSVFFFDILHCDGVDLLDAPTTDRLAALDALVPPAQRVDQLLTADPDAAGRFLEATL 370
Query 352 AAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGAR 411
AAGHEGVMAKAP A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGAR
Sbjct 371 AAGHEGVMAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGAR 430
Query 412 DPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRS 471
DPATG FVMVGKTFKGMTDAMLDWQT RF E+AVG TDGYVV++RPEQVVEVA+DGVQ+S
Sbjct 431 DPATGEFVMVGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVRVRPEQVVEVAVDGVQKS 490
Query 472 SRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
SRYPGGLALRFARV+RYR DK PAEADTIDAVRALY
Sbjct 491 SRYPGGLALRFARVLRYRDDKGPAEADTIDAVRALY 526
>gi|108798767|ref|YP_638964.1| ATP-dependent DNA ligase [Mycobacterium sp. MCS]
gi|119867885|ref|YP_937837.1| ATP-dependent DNA ligase [Mycobacterium sp. KMS]
gi|126434369|ref|YP_001070060.1| ATP-dependent DNA ligase [Mycobacterium sp. JLS]
6 more sequence titles
Length=520
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/521 (73%), Positives = 420/521 (81%), Gaps = 18/521 (3%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAP--DTQLVTIIVSWLSGELPQRHIGV 58
+LL DVA S+DV A SSRL K ARIA LL RA D +LV + V+WLSGELPQR IGV
Sbjct 1 MLLVDVATASVDVGAMSSRLAKTARIADLLSRAGTEQDARLVAVTVAWLSGELPQRQIGV 60
Query 59 GWAALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFL 118
GWAALRSLP PA P LTVT VDA S+IG + GKGSQA+RA L+AELF+AAT+ EQTFL
Sbjct 61 GWAALRSLPAPAAAPTLTVTAVDAVFSEIGAVAGKGSQARRAGLIAELFAAATDVEQTFL 120
Query 119 LRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLS--GAALDTF 176
RLL GELRQGA G+MADAVA+AA +PAA V+RAAML GDL A AAA L+ AAL F
Sbjct 121 RRLLTGELRQGALIGVMADAVAKAADVPAARVRRAAMLAGDLPAVAAAVLAGGDAALARF 180
Query 177 TLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDV 236
TL+VGRP+GPMLAQTAT V DAL+R GGT +FEAKLDGARVQIHR V +YTRSLDDV
Sbjct 181 TLQVGRPVGPMLAQTATGVADALDRLGGTAVFEAKLDGARVQIHRRGSDVSVYTRSLDDV 240
Query 237 TARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLS 296
TARLPEVVEA LALPV DL+AD EAIAL PD RP RFQVTASRFGR AAARATQPLS
Sbjct 241 TARLPEVVEAALALPVTDLIADAEAIALRPDGRPHRFQVTASRFGR----AAARATQPLS 296
Query 297 VFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHE 356
VF FD+LH DG DLL+ PT++R+ LD LVPA HRVDRL+T D A FL+ATLAAGHE
Sbjct 297 VFMFDLLHVDGADLLDQPTSDRVRVLDDLVPAAHRVDRLVTDDGAAAQRFLEATLAAGHE 356
Query 357 GVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATG 416
GVMAK+P A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRR GKLSNIHLGARDPATG
Sbjct 357 GVMAKSPNAPYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRTGKLSNIHLGARDPATG 416
Query 417 GFVMVGKTFKGMTDAMLDWQTTRFHEIA----------VGPTDGYVVQLRPEQVVEVALD 466
GFVM+GKTFKGMTDAMLDWQT RF E+A PTDG+ V++RPEQVVE+A D
Sbjct 417 GFVMLGKTFKGMTDAMLDWQTARFLELADPAAQPATSGRDPTDGHTVKVRPEQVVEIAFD 476
Query 467 GVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
GVQ S+RYPGG+ALRFARV+RYR DK PAEADT+D VRA Y
Sbjct 477 GVQGSTRYPGGMALRFARVLRYRDDKSPAEADTVDTVRAFY 517
>gi|118471939|ref|YP_886629.1| ATP-dependent DNA ligase [Mycobacterium smegmatis str. MC2 155]
gi|224487930|sp|A0QUP1.1|DNLI_MYCS2 RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|118173226|gb|ABK74122.1| DNA ligase I, ATP-dependent [Mycobacterium smegmatis str. MC2
155]
Length=509
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/512 (72%), Positives = 408/512 (80%), Gaps = 12/512 (2%)
Query 2 LLHDVAITSMDVAATSSRLTKVARIAALLHRAAP--DTQLVTIIVSWLSGELPQRHIGVG 59
+L DVA S +VAA+S+RL K+ RIA LL R+A DTQ V +IVSWLSGELPQR IGVG
Sbjct 1 MLADVAAASTEVAASSARLVKIERIATLLARSAAEDDTQAVAVIVSWLSGELPQRQIGVG 60
Query 60 WAALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLL 119
WAALR+LPPPA P+LTV VD LS I + GKGSQA RA LV ELFSAAT+ EQ FL
Sbjct 61 WAALRTLPPPAATPSLTVDDVDDRLSTIKAVAGKGSQATRAGLVHELFSAATDPEQKFLR 120
Query 120 RLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFT 177
LL GELRQGA G+MADAVA+AAGLPAA ++RAAML G+L A AAA ++G AAL F
Sbjct 121 HLLSGELRQGALAGVMADAVAKAAGLPAAEIRRAAMLAGNLPAVAAAAVTGGRAALADFR 180
Query 178 LRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVT 237
LRVGRP+GPMLAQTATSV DAL+R GGT + EAKLDGARVQIHR+ V IYTRSLDDVT
Sbjct 181 LRVGRPVGPMLAQTATSVDDALQRLGGTAVLEAKLDGARVQIHRSGCDVSIYTRSLDDVT 240
Query 238 ARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSV--DVAAARATQPL 295
RLPEVVEATLALP +L+AD EAIAL PD RP FQVTA+RFGR D+ PL
Sbjct 241 HRLPEVVEATLALPATELIADAEAIALRPDGRPHLFQVTAARFGRKDPGDLG------PL 294
Query 296 SVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGH 355
SVFFFD+LH DG DLL+ PT ER ALDALV RVDRL+T+D A FL+ TLAAGH
Sbjct 295 SVFFFDLLHVDGRDLLDLPTEERFGALDALVRQDQRVDRLVTTDTVAAQEFLERTLAAGH 354
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGVMAK+P A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRR+GKLSNIHLGARDP +
Sbjct 355 EGVMAKSPHAAYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRQGKLSNIHLGARDPDS 414
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
GFVM+GKTFKGMTDAML+WQT RF E+A GPTDGYVV LRPEQVVE+A DGVQRSSRYP
Sbjct 415 SGFVMLGKTFKGMTDAMLEWQTQRFLELADGPTDGYVVHLRPEQVVEIAFDGVQRSSRYP 474
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ALRF RV+RYR DK PAEADT++ VR Y
Sbjct 475 AGMALRFVRVLRYRDDKSPAEADTVETVRRFY 506
>gi|120403019|ref|YP_952848.1| ATP-dependent DNA ligase [Mycobacterium vanbaalenii PYR-1]
gi|224487904|sp|A1T6P2.1|DNLI_MYCVP RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|119955837|gb|ABM12842.1| DNA ligase I, ATP-dependent Dnl1 [Mycobacterium vanbaalenii PYR-1]
Length=534
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/531 (70%), Positives = 413/531 (78%), Gaps = 25/531 (4%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAA--PDTQLVTIIVSWLSGELPQRHIGV 58
+LL DVA S DVAA S+RL KVARIA LL A D +LV ++VSWLSGEL QR IGV
Sbjct 1 MLLVDVANASADVAAMSARLAKVARIAELLRTAGRQGDARLVRVVVSWLSGELTQRQIGV 60
Query 59 GWAALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFL 118
GW ++RS+P PA QP+LTV VDA +IG+ GKGSQA+RAAL+AELF+AAT EQ FL
Sbjct 61 GWRSVRSVPDPAAQPSLTVEDVDARFGEIGSTSGKGSQARRAALLAELFAAATAVEQVFL 120
Query 119 LRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTF 176
RLL GELRQGA GG+MADAV +AAG+P+A V+RAAMLGGDL A AAA ++ +AL F
Sbjct 121 RRLLTGELRQGALGGVMADAVGKAAGVPSAVVRRAAMLGGDLPAVAAAAVTDGESALAQF 180
Query 177 TLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDV 236
TL+VGRP+GPMLAQTAT V DAL+R GGT +FEAKLDGARVQIHR D V ++TRSLDDV
Sbjct 181 TLQVGRPVGPMLAQTATGVADALDRFGGTALFEAKLDGARVQIHRRGDAVSVFTRSLDDV 240
Query 237 TARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLS 296
TARLPEVV+ATLALPV +L+AD EAIAL PD RP RFQ+TASRFGR A TQ LS
Sbjct 241 TARLPEVVDATLALPVTELIADAEAIALRPDGRPHRFQITASRFGRRGGTPDA-GTQRLS 299
Query 297 VFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHE 356
VFFFD+LH DG DLL+ PT ER+A LDA VP RVDRL+TSDP A FLDATLAAGHE
Sbjct 300 VFFFDLLHADGVDLLDLPTGERIATLDATVPREQRVDRLLTSDPEAAQAFLDATLAAGHE 359
Query 357 GVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATG 416
GVMAK+P A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRR GKLSNIHLGARDPATG
Sbjct 360 GVMAKSPTAPYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRTGKLSNIHLGARDPATG 419
Query 417 GFVMVGKTFKGMTDAMLDWQTTRFHEIAV--------------------GPTDGYVVQLR 456
GFVM+GKTFKGMTD ML WQT RF E+A G DG+ V +R
Sbjct 420 GFVMLGKTFKGMTDEMLAWQTERFLELADGAAPAATADHGAAPAATADHGAADGFTVTVR 479
Query 457 PEQVVEVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
PEQVVE+A DG+Q SSRYPGG+ALRFARV+ YR DK AEADTID VRAL+
Sbjct 480 PEQVVEIAFDGIQTSSRYPGGMALRFARVLCYRDDKTAAEADTIDTVRALH 530
>gi|145224900|ref|YP_001135578.1| ATP-dependent DNA ligase [Mycobacterium gilvum PYR-GCK]
gi|315445230|ref|YP_004078109.1| ATP-dependent DNA ligase I [Mycobacterium sp. Spyr1]
gi|224487895|sp|A4TDS2.1|DNLI_MYCGI RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|145217386|gb|ABP46790.1| DNA ligase I, ATP-dependent Dnl1 [Mycobacterium gilvum PYR-GCK]
gi|315263533|gb|ADU00275.1| ATP-dependent DNA ligase I [Mycobacterium sp. Spyr1]
Length=511
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/510 (71%), Positives = 405/510 (80%), Gaps = 6/510 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DVA S DVAA+S+RL K+ARIA LL RA + V I+VSWLSGEL QR IGVGW
Sbjct 1 MLLVDVAGASADVAASSARLAKIARIAELLRRAGRED--VAIVVSWLSGELTQRQIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
A+LRS+P A +P LTV V+ +IG G+GSQA+RA L+A+LFSAAT+ EQTFL R
Sbjct 59 ASLRSVPAAAAEPTLTVAEVERRFGEIGATAGRGSQARRAQLLADLFSAATDVEQTFLRR 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LL GELRQGA G+MADAVA+AA LPAATV+RAAMLGGDL A AAA L+ A L FTL
Sbjct 119 LLTGELRQGALVGVMADAVAKAADLPAATVRRAAMLGGDLPAVAAAALTDGDAGLAQFTL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
+ G+ +GPMLAQTA V DAL+R GGT +FEAKLDGARVQIHR D V I+TRSLDDVTA
Sbjct 179 QAGKAVGPMLAQTAADVTDALDRLGGTAMFEAKLDGARVQIHRRGDSVSIFTRSLDDVTA 238
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVVEATLALPV DL+AD EAIAL PD RP RFQVTASRFGR + A+ PLSVF
Sbjct 239 RLPEVVEATLALPVTDLIADAEAIALRPDGRPHRFQVTASRFGRRGGTSDT-ASNPLSVF 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFD+LH DG DLL+AP ER+A LDA+ P RVDRL+TSDP A F D TLAAGHEGV
Sbjct 298 FFDLLHVDGVDLLDAPAHERIARLDAVTPDSQRVDRLVTSDPGAAQEFFDRTLAAGHEGV 357
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
MAK+ A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRR GKLSNIHLGARDP TGGF
Sbjct 358 MAKSTVAPYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRSGKLSNIHLGARDPGTGGF 417
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVG-PTDGYVVQLRPEQVVEVALDGVQRSSRYPGG 477
VM+GKTFKGMTD ML WQT RF ++A G TD YVV++RPEQVVE+A DG+Q S+RYPGG
Sbjct 418 VMLGKTFKGMTDEMLAWQTRRFLDLADGDATDHYVVKVRPEQVVEIAFDGLQTSTRYPGG 477
Query 478 LALRFARVVRYRADKDPAEADTIDAVRALY 507
+ALRFARVVRYR DK +ADTID VR +Y
Sbjct 478 MALRFARVVRYRDDKAATDADTIDTVREIY 507
>gi|296171131|ref|ZP_06852583.1| possible ATP-dependent DNA ligase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894321|gb|EFG74075.1| possible ATP-dependent DNA ligase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=345
Score = 569 bits (1466), Expect = 5e-160, Method: Compositional matrix adjust.
Identities = 286/334 (86%), Positives = 305/334 (92%), Gaps = 0/334 (0%)
Query 174 DTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSL 233
D F LRVG+P+GPMLAQTAT V DALERHGGTTIFEAKLDGARVQIHR+ +V +YTRSL
Sbjct 12 DAFALRVGQPVGPMLAQTATGVDDALERHGGTTIFEAKLDGARVQIHRSGGEVTVYTRSL 71
Query 234 DDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQ 293
DDVTARLPEVV+ATLALPVRDL+ADGEAIAL PD+ P RFQVTASRFGRSVDVAAA A Q
Sbjct 72 DDVTARLPEVVDATLALPVRDLIADGEAIALRPDSSPHRFQVTASRFGRSVDVAAAHAAQ 131
Query 294 PLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAA 353
PLSVFFFDILH DGTDLL+APTTERLAALDALVP RVDRL+TSD AA+FL ATLAA
Sbjct 132 PLSVFFFDILHHDGTDLLDAPTTERLAALDALVPPAQRVDRLLTSDRAAAADFLRATLAA 191
Query 354 GHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDP 413
GHEGV+AKAPAA Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDP
Sbjct 192 GHEGVLAKAPAAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDP 251
Query 414 ATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSR 473
TG FVMVGKTFKGMTDAMLDWQT RF E+AVG TDGYVV++RPEQVVEVALDGVQ+S+R
Sbjct 252 VTGEFVMVGKTFKGMTDAMLDWQTERFTELAVGGTDGYVVRVRPEQVVEVALDGVQKSTR 311
Query 474 YPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
YPGG+ALRFARV+RYR DK PAEADTIDAVRALY
Sbjct 312 YPGGVALRFARVLRYRDDKSPAEADTIDAVRALY 345
>gi|254776357|ref|ZP_05217873.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. avium ATCC
25291]
Length=343
Score = 557 bits (1435), Expect = 2e-156, Method: Compositional matrix adjust.
Identities = 287/342 (84%), Positives = 305/342 (90%), Gaps = 2/342 (0%)
Query 168 LSG--AALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQ 225
LSG +ALD FTLRVGRP+ PMLAQTA V +A+ERHGG IFEAKLDGARVQIHRA DQ
Sbjct 2 LSGEASALDAFTLRVGRPVAPMLAQTAAGVAEAIERHGGQAIFEAKLDGARVQIHRAGDQ 61
Query 226 VRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVD 285
V +YTRSLDDVTARLPEVV ATLALPV L+ADGEAIAL PDN PQRFQVTASRFG SVD
Sbjct 62 VTVYTRSLDDVTARLPEVVTATLALPVEALIADGEAIALRPDNSPQRFQVTASRFGHSVD 121
Query 286 VAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAAN 345
VAAA A QPLSVFFFDILH DG DLL+APTT+RLAALDALVP RVD+L+T+DP A
Sbjct 122 VAAAVAAQPLSVFFFDILHCDGVDLLDAPTTDRLAALDALVPPAQRVDQLLTADPDAAGR 181
Query 346 FLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSN 405
FL+ATLAAGHEGVMAKAP A Y AGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSN
Sbjct 182 FLEATLAAGHEGVMAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSN 241
Query 406 IHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVAL 465
IHLGARDPATG FVMVGKTFKGMTDAMLDWQT RF E+AVG TDGYVV++RPEQVVEVA+
Sbjct 242 IHLGARDPATGEFVMVGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVRVRPEQVVEVAV 301
Query 466 DGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
DGVQ+SSRYPGGLALRFARV+RYR DK PAEADTIDAVRALY
Sbjct 302 DGVQKSSRYPGGLALRFARVLRYRDDKGPAEADTIDAVRALY 343
>gi|296270402|ref|YP_003653034.1| DNA ligase I, ATP-dependent Dnl1 [Thermobispora bispora DSM 43833]
gi|296093189|gb|ADG89141.1| DNA ligase I, ATP-dependent Dnl1 [Thermobispora bispora DSM 43833]
Length=509
Score = 550 bits (1416), Expect = 3e-154, Method: Compositional matrix adjust.
Identities = 301/508 (60%), Positives = 356/508 (71%), Gaps = 4/508 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL ++A TS VAA SSR K+ +A LL RA PD I +++LSGELPQR IGVGW
Sbjct 1 MLLIELARTSAAVAADSSRKAKIGHLAELLRRAGPDE--AEIAIAYLSGELPQRQIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
+L LP P TVT VDA L +I G GSQA R L+ ELF++ TE EQ+FL R
Sbjct 59 RSLLDLPGPRQIATATVTQVDAMLERIKAQSGPGSQAARRELLGELFASLTEQEQSFLRR 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LL GELRQGA G+M +A+A AA +PA V+RA L G L A AA L G AAL F L
Sbjct 119 LLAGELRQGALEGVMIEAIAAAAEVPAQEVRRALTLRGSLPAVGAAALRGGVAALREFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLAQ+A SV ALE+ GG E K DG RVQ HR V ++TR+LDD+TA
Sbjct 179 EVGRPVAPMLAQSAPSVTAALEKIGGPAAIEWKFDGVRVQAHRKGGWVGVFTRTLDDITA 238
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
++PE+VEA LALP DLV DGE IAL PD RP+ FQVT+ R DVAA R + PLSVF
Sbjct 239 QVPELVEAVLALPDDDLVLDGEVIALRPDGRPEPFQVTSGRVASRTDVAALRKSVPLSVF 298
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFD L G DLL+ P +ER AAL+A VPA R++T DP + F + GHEGV
Sbjct 299 FFDALRVGGADLLDLPGSERHAALEAAVPAELIAPRIVTGDPDEGERFFSDAIQRGHEGV 358
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
+ K+P Y AGRRGAGW+KVKP HTLDLVVLA EWGSGRR G LSN+HLGA DP TGGF
Sbjct 359 VVKSPQTPYTAGRRGAGWIKVKPRHTLDLVVLAAEWGSGRRTGWLSNLHLGAYDPETGGF 418
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VM+GKTFKG+TD +L WQT R +AVGPTDG+VV ++PE VVE+A DGVQRS RYPGG+
Sbjct 419 VMLGKTFKGLTDELLAWQTERLLRLAVGPTDGWVVTVKPELVVEIAFDGVQRSPRYPGGM 478
Query 479 ALRFARVVRYRADKDPAEADTIDAVRAL 506
ALRFARV+RYR DK P +ADT+ AVRAL
Sbjct 479 ALRFARVLRYRPDKRPEQADTVAAVRAL 506
>gi|271968417|ref|YP_003342613.1| ATP-dependent DNA ligase [Streptosporangium roseum DSM 43021]
gi|270511592|gb|ACZ89870.1| ATP-dependent DNA ligase [Streptosporangium roseum DSM 43021]
Length=508
Score = 541 bits (1393), Expect = 1e-151, Method: Compositional matrix adjust.
Identities = 294/508 (58%), Positives = 351/508 (70%), Gaps = 4/508 (0%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL D+A TS V A S+RL K+ +A LL R D I +S+LSGELPQRHIGVGW
Sbjct 1 MLLIDLARTSAAVTADSARLAKIGHLAELLGRV--DADEAEIAISYLSGELPQRHIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
A L+ P P T+ V+ L +I G GSQA R AL+ ELF+A T EQTFL R
Sbjct 59 AGLQDPPDPRLAATATLRQVNDLLDRIKAQAGPGSQAARKALIIELFAALTRQEQTFLSR 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
LL ELRQGA G+M +A+A+A+ +P A V+RA L G L A AA LSG AL F L
Sbjct 119 LLRSELRQGALDGVMIEAIAKASAVPTAEVRRALTLRGWLPAVGAAALSGGVNALRAFHL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLAQ+ATSV AL + GG E KLDG RVQ HR+ D V ++TR+LDD+TA
Sbjct 179 EVGRPVSPMLAQSATSVAAALGKLGGPAAIEWKLDGVRVQAHRSGDAVSVFTRTLDDITA 238
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
++PE+VEA AL +DLV DGE IAL PD RP+ FQVT+ R +DVA R PL VF
Sbjct 239 QVPELVEAVRALSSQDLVLDGEVIALRPDGRPEPFQVTSGRVSSRIDVARVRERTPLRVF 298
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFD L DG DLL+ P R AAL A VP+ RL+T D F + AGHEGV
Sbjct 299 FFDALRVDGVDLLDLPGEVRHAALAATVPSELVTPRLVTGDAASGEAFFKDVVRAGHEGV 358
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
+ K+ Y AGRRGAGW+KVKP HTLDLVVLA EWGSGRR G+LSN+HLGARDP TGGF
Sbjct 359 VVKSLQTPYAAGRRGAGWIKVKPRHTLDLVVLAAEWGSGRREGRLSNLHLGARDPQTGGF 418
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VM+GKTFKG+TD +L WQT RF EIA GPTDG+ V +RPE VVE+A DGVQ+S RYPGG+
Sbjct 419 VMLGKTFKGLTDEVLAWQTERFLEIAEGPTDGWTVVVRPELVVEIAFDGVQQSPRYPGGM 478
Query 479 ALRFARVVRYRADKDPAEADTIDAVRAL 506
ALRFARVVRYR DK+ +ADT++ VR+L
Sbjct 479 ALRFARVVRYRPDKNADQADTVEMVRSL 506
>gi|86160576|ref|YP_467361.1| ATP-dependent DNA ligase [Anaeromyxobacter dehalogenans 2CP-C]
gi|123497255|sp|Q2IH69.1|DNLI_ANADE RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|85777087|gb|ABC83924.1| DNA ligase I, ATP-dependent (dnl1) [Anaeromyxobacter dehalogenans
2CP-C]
Length=513
Score = 514 bits (1323), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 295/513 (58%), Positives = 343/513 (67%), Gaps = 8/513 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL ++A S VAAT +RL K+AR+A L R APD + V SWL+G+LP +G+G
Sbjct 1 MLLAELAEVSRAVAATPARLEKIARLADALGRLAPDERAVG--ASWLAGDLPGGRVGIGA 58
Query 61 AALRSL----PPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQT 116
A LR+ PP P LTV VDA L +I + G GS A R + L + A E+
Sbjct 59 ATLRAALEAAPPERSGPGLTVAEVDAALRRIAAVAGPGSGAARRRELDALLARAGNPERR 118
Query 117 FLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLS--GAALD 174
FL L+ GELRQGA G++ADAVA+AAGLPAA V+RAAML G L A A LS A L
Sbjct 119 FLAALVLGELRQGALEGVLADAVAKAAGLPAAEVRRAAMLAGALPPVAEAALSEGAAGLA 178
Query 175 TFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLD 234
F LRVG P+ PMLAQTA V +AL GG E KLDGAR+Q HR + VR+++RSL
Sbjct 179 RFRLRVGEPVSPMLAQTAADVDEALRALGGEAALEWKLDGARIQAHRDGEAVRVFSRSLR 238
Query 235 DVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQP 294
DVTA +PEVV A P LV DGEAIAL D P+ FQVT RFGR +DV P
Sbjct 239 DVTAAVPEVVALLRAAPEPRLVLDGEAIALRADGTPEPFQVTMRRFGRKLDVERLAPELP 298
Query 295 LSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAG 354
L+ FFFD L G +LL P ER AAL +PA RV RL+T DP +A FL+ LA G
Sbjct 299 LTAFFFDALVAGGAELLARPERERWAALARAIPAERRVPRLVTRDPAEARAFLEDALARG 358
Query 355 HEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPA 414
EGV+AKA A Y AGRRGA WLKVK HTLDLVVLA EWGSGRRRG LSN+HLGARDPA
Sbjct 359 QEGVVAKALDAPYEAGRRGAAWLKVKRAHTLDLVVLAAEWGSGRRRGWLSNLHLGARDPA 418
Query 415 TGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRY 474
+GGFVM+GKTFKGMTDAML WQT R +A GP D + V +RPE VVEVA DG+Q S RY
Sbjct 419 SGGFVMLGKTFKGMTDAMLAWQTDRLKALATGPLDAWQVPVRPELVVEVAFDGIQSSPRY 478
Query 475 PGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
PGGLALRFARV RYR DK P +ADTI+ VR LY
Sbjct 479 PGGLALRFARVKRYREDKRPEDADTIETVRGLY 511
>gi|220919391|ref|YP_002494695.1| ATP-dependent DNA ligase [Anaeromyxobacter dehalogenans 2CP-1]
gi|254778139|sp|B8JBM1.1|DNLI_ANAD2 RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|219957245|gb|ACL67629.1| DNA ligase I, ATP-dependent Dnl1 [Anaeromyxobacter dehalogenans
2CP-1]
Length=513
Score = 514 bits (1323), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 296/513 (58%), Positives = 343/513 (67%), Gaps = 8/513 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL ++A S VAAT +RL K+AR+A L R APD + V SWL+G+LP IG+G
Sbjct 1 MLLAELAEVSRAVAATPARLEKIARLAEALRRLAPDERAVG--ASWLAGDLPGGRIGIGG 58
Query 61 AALRSLPPPAPQ----PALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQT 116
A +R+ AP P LTV VDA L +I T G GS R + L + A E+
Sbjct 59 ATVRAALDAAPAEGGGPGLTVAEVDAALGRIATASGAGSAGARRRELDALLARAGAPERW 118
Query 117 FLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLS--GAALD 174
FL LL GELRQGA G++ADAVA+AAGLPAA V+RAAML G L A A LS A L
Sbjct 119 FLAALLLGELRQGALEGVLADAVARAAGLPAAEVRRAAMLAGALPPVAVAALSEGAAGLA 178
Query 175 TFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLD 234
F LRVG P+ PMLAQTA V +AL GG E KLDGAR+Q HR +VR+++RSL
Sbjct 179 RFRLRVGEPVSPMLAQTAADVEEALRALGGEAALEWKLDGARIQAHRDGGEVRVFSRSLR 238
Query 235 DVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQP 294
DVTA +PEVV A P LV DGEAIAL D P+ FQVT RFGR +DV P
Sbjct 239 DVTAAVPEVVALLRAAPEPRLVLDGEAIALRADGTPEPFQVTMRRFGRRLDVERLAPDLP 298
Query 295 LSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAG 354
L+ FFFD L G +LL +P R AAL+ VPA RV RL+T DP +A FL+ LA G
Sbjct 299 LTAFFFDALVAGGAELLASPERVRWAALERAVPAEQRVPRLVTRDPAEAGAFLEDALARG 358
Query 355 HEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPA 414
EGV+AKA A Y AGRRGA WLKVK HTLDLVVLA EWGSGRRRG LSN+HLGARDP+
Sbjct 359 QEGVVAKALDAPYEAGRRGAAWLKVKRAHTLDLVVLAAEWGSGRRRGWLSNLHLGARDPS 418
Query 415 TGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRY 474
TGGFVM+GKTFKGMTDAML WQT R +A GP D + V +RPE VVEVA DG+Q S RY
Sbjct 419 TGGFVMLGKTFKGMTDAMLAWQTERLKALATGPLDAWQVPVRPELVVEVAFDGIQSSPRY 478
Query 475 PGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
PGGLALRFARV RYR DK P +ADTI+ VR LY
Sbjct 479 PGGLALRFARVKRYREDKRPEDADTIETVRGLY 511
>gi|291441032|ref|ZP_06580422.1| DNA ligase [Streptomyces ghanaensis ATCC 14672]
gi|291343927|gb|EFE70883.1| DNA ligase [Streptomyces ghanaensis ATCC 14672]
Length=512
Score = 492 bits (1266), Expect = 7e-137, Method: Compositional matrix adjust.
Identities = 284/512 (56%), Positives = 342/512 (67%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +A S +VAATS+R K+A +A L A D V I++ +L+G LPQ IGVGW
Sbjct 1 MLLSRLARVSQEVAATSARSRKIALLAELFRDAGADD--VPIVIPYLAGRLPQGRIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
AL PA +P+LTV VDA L ++G + G GSQA+RA LV EL AATE EQ FL
Sbjct 59 KALNRPVAPAAEPSLTVREVDALLGRLGEVSGPGSQAERARLVGELLGAATEDEQRFLSG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LL GE+RQGA + + +A+A G P A V+RA ML G L A A L+ AAL+ F L
Sbjct 119 LLTGEVRQGALDAVAVEGLARATGTPPAEVRRAVMLAGSLQTVAGALLADGPAALERFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLA +A+SV +A+E+ G + E KLDG RVQ+HR D VR++TR+LDD+T
Sbjct 179 TVGRPVLPMLAHSASSVAEAVEKLGACAV-EEKLDGIRVQVHRDGDTVRVHTRTLDDITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEV A L + DGE I+ D RP+ FQ TA R G VDVAAA P+S
Sbjct 238 RLPEVTAAARELRGERFILDGEVISFDQDGRPRSFQETAGRVGSRVDVAAAAREVPVSPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD---AANFLDATLAAGH 355
FFD L D DLL+ P ER A L LVP RV R + S P + A FL TL GH
Sbjct 298 FFDALSVDDRDLLDLPFAERHAELARLVPEPLRVRRTVVSGPRETGAAEEFLAQTLRRGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+AK A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR A
Sbjct 358 EGVVAKGLDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGART-AD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
GGF M+GKTFKG+TDAML WQT R E+AV + GYVV +RPE VVE+A DG+QRS+RYP
Sbjct 417 GGFAMLGKTFKGLTDAMLAWQTERLRELAVDES-GYVVTVRPELVVEIAYDGLQRSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARVVRYR DK P EADT++A+ A +
Sbjct 476 AGVTLRFARVVRYREDKRPEEADTVEALLAAH 507
>gi|345008057|ref|YP_004810411.1| DNA ligase [Streptomyces violaceusniger Tu 4113]
gi|344034406|gb|AEM80131.1| DNA ligase [Streptomyces violaceusniger Tu 4113]
Length=512
Score = 491 bits (1263), Expect = 2e-136, Method: Compositional matrix adjust.
Identities = 280/514 (55%), Positives = 346/514 (68%), Gaps = 13/514 (2%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DVA+TS VAATS+R K+A +A L R P +++++L+G+LPQR GVGW
Sbjct 1 MLLADVALTSRQVAATSARSEKIAALARLFRRTEPAE--AAVVITYLAGKLPQRRTGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
+ LR PA +P L V VD L+++ + G G+ A R LV EL +AAT+ EQ FLL
Sbjct 59 STLRHRQEPAAEPTLAVLDVDEALTRVAAVSGTGATAARKRLVGELLAAATKEEQGFLLG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
L+GGELRQGA G+ + +AQA G PAA V+RA M+GG L A A L+ AL F L
Sbjct 119 LIGGELRQGALEGLAVEGLAQAVGAPAAEVRRAVMVGGSLGTVAEALLARGPEALAGFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLAQ+A + +A++R G + E KLDG RVQ+HR + VRIYTR+LD++T
Sbjct 179 EVGRPVLPMLAQSAKDLDEAIDRLGPCAV-EEKLDGIRVQVHRDGEDVRIYTRTLDEITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVV A L V + DGE I L + RP+ FQ T++R G +DVA A A PLS
Sbjct 238 RLPEVVTAARELAVDRAILDGEVILLDGEGRPRPFQETSARVGSRLDVAGASAALPLSPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD------AANFLDATLA 352
FFD+L D DLL+ P ER A L + P RV RL+T DP D A F LA
Sbjct 298 FFDLLVVDDRDLLDLPARERHAELARIAPGPRRVRRLVTDDPADPETRRAAREFAADVLA 357
Query 353 AGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARD 412
GHEGV+ KA A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR
Sbjct 358 RGHEGVLVKALEAPYGAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGAR- 416
Query 413 PATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSS 472
A G ++M+GKTFKG+TDAML+WQT IAV DG+VV++RPE VVEVA DG+QRSS
Sbjct 417 AADGTYLMLGKTFKGLTDAMLEWQTQALLGIAVS-DDGWVVRVRPELVVEVAFDGLQRSS 475
Query 473 RYPGGLALRFARVVRYRADKDPAEADTIDAVRAL 506
RYP G+ LRFARV+RYR DK +ADT++AV AL
Sbjct 476 RYPAGVTLRFARVLRYREDKPADQADTVEAVLAL 509
>gi|326331744|ref|ZP_08198032.1| DNA ligase [Nocardioidaceae bacterium Broad-1]
gi|325950543|gb|EGD42595.1| DNA ligase [Nocardioidaceae bacterium Broad-1]
Length=501
Score = 488 bits (1255), Expect = 1e-135, Method: Compositional matrix adjust.
Identities = 269/505 (54%), Positives = 339/505 (68%), Gaps = 9/505 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL D+ TS VAAT SR KVA +A L AA + I+ ++LSG L QR G+GW
Sbjct 1 MLLADIVSTSNAVAATRSRKAKVAALAECL--AATSRDELPIVTAYLSGTLLQRRTGLGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
+L +LP PA +P+LTV V ++ + G GSQ +RA LF ATEAEQ +L
Sbjct 59 RSLSALPSPAAEPSLTVGEVHEAFERMSRVAGAGSQVERAREAEALFGTATEAEQAWLRG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA-ALDTFTLR 179
++ GE+RQGA ++ +A+A AA +P V+RAAML G A G AL L
Sbjct 119 VVTGEVRQGALDSLVQEALAVAAQVPLTAVRRAAMLAGSTVVVAGLAFDGEEALADVGLV 178
Query 180 VGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTAR 239
VGRP+ PMLA +A SV +A+ + G + + KLDG R+Q H++ +VRI TR+L+D+T+R
Sbjct 179 VGRPVLPMLASSAGSVEEAMAKFGEAVMVDTKLDGIRIQAHKSGPEVRIATRTLEDITSR 238
Query 240 LPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFF 299
LPEV + + P LV DGEA+ L PD RP+ FQ TASR + A A P +F
Sbjct 239 LPEVAKIVASFPADTLVLDGEAMTLGPDGRPRPFQETASR--TATRSAPGSAVVP---YF 293
Query 300 FDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGVM 359
FDILH DG DL++ +RLA LD +VP +HR RL+T D +A F LAAGHEGV+
Sbjct 294 FDILHVDGRDLIDLALDQRLAELDRIVPEKHRPPRLVTVDTEEAERFATDVLAAGHEGVV 353
Query 360 AKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFV 419
K + AGRRG+GW+KVKPVHTLDLVV+ +EWGSGRR+G LSNIHLGAR A G FV
Sbjct 354 VKGVGLPWEAGRRGSGWIKVKPVHTLDLVVIGIEWGSGRRKGWLSNIHLGARG-ADGEFV 412
Query 420 MVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLA 479
M+GKTFKGMTD ML WQT RF E+AVG TD + V++RPEQVVE+A DGVQRS+RYPGG+A
Sbjct 413 MIGKTFKGMTDQMLAWQTERFTELAVGGTDDWQVKVRPEQVVEIAFDGVQRSTRYPGGVA 472
Query 480 LRFARVVRYRADKDPAEADTIDAVR 504
LRFARVVRYR DK PAEADTI+ VR
Sbjct 473 LRFARVVRYRDDKSPAEADTIETVR 497
>gi|302549851|ref|ZP_07302193.1| DNA polymerase LigD, ligase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
gi|302467469|gb|EFL30562.1| DNA polymerase LigD, ligase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
Length=512
Score = 485 bits (1249), Expect = 7e-135, Method: Compositional matrix adjust.
Identities = 281/512 (55%), Positives = 333/512 (66%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LLH +A S +VAATS+R K A +A L A D V I++ +L+G LPQ IGVGW
Sbjct 1 MLLHRLARVSQEVAATSARSRKTALLAELFREAEADD--VPIVIPYLAGRLPQGRIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L PA P LTV VD LS++ + G GSQA+RA LV L AATE EQ FL+
Sbjct 59 KVLSRPVAPACDPVLTVREVDVRLSELAQVSGPGSQAERARLVGALMGAATEDEQRFLIG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LL GE+RQGA + + +AQA G A V+RA ML G L A A A L+ AALD F L
Sbjct 119 LLTGEVRQGALDAVAVEGLAQATGAAPAEVRRAVMLAGSLQAVAEALLADGPAALDRFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLA +A+SV +A+++ G + E KLDG RVQ+HR D VR+YTR+LDD+T
Sbjct 179 TVGRPVWPMLAHSASSVAEAVDKLGACAV-EEKLDGIRVQVHRDGDSVRLYTRTLDDITG 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEV A L L + DGE I+ RP+ FQ TA R G DVA A P+S
Sbjct 238 RLPEVTAAALELRGERFILDGEVISFDEGGRPRSFQETAGRVGSRTDVATAARAVPVSPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD---AANFLDATLAAGH 355
FFD L DG DLL+ P ER A L LVP RV R S P D A FL TL GH
Sbjct 298 FFDALSVDGHDLLDLPFAERHAELARLVPEPTRVRRTTVSGPDDVRTAEEFLAETLKRGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+ KA A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR A
Sbjct 358 EGVVVKALDAPYSAGRRGAAWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGART-AD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
GG M+GKTFKGMTDAML WQT R +AV +GYVV +RPE VVE+A DG+QRS+RYP
Sbjct 417 GGLAMLGKTFKGMTDAMLTWQTERLQRLAV-EDNGYVVTVRPELVVEIAYDGLQRSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARVVRYR DK P +ADT++ + A +
Sbjct 476 AGVTLRFARVVRYREDKRPEDADTVETLLAAH 507
>gi|294628113|ref|ZP_06706673.1| DNA ligase [Streptomyces sp. e14]
gi|292831446|gb|EFF89795.1| DNA ligase [Streptomyces sp. e14]
Length=512
Score = 485 bits (1248), Expect = 8e-135, Method: Compositional matrix adjust.
Identities = 279/512 (55%), Positives = 341/512 (67%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +A S DVAATS+R K A +A L A D V I++ +L+G LPQ +GVGW
Sbjct 1 MLLARLAQVSRDVAATSARSRKTALLAELFREAEADD--VPIVIPYLAGRLPQGRLGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L PA +P+LTV VDA LS++G + G GSQA+R +V EL +AATE EQ FLL
Sbjct 59 KVLGRRVAPAAEPSLTVAEVDARLSELGKVSGPGSQAERTRIVGELMAAATEDEQRFLLG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
LL GE+RQGA + + +AQA G P A V+RA ML G L A A L+ ALD F L
Sbjct 119 LLTGEVRQGALDALAVEGLAQATGAPPADVRRAVMLAGSLQPVARALLADGPPALDRFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLA +A+SV +A+++ G + E KLDG RVQ+HR D VR++TR+LDD+T
Sbjct 179 TVGRPVLPMLAHSASSVAEAVDKLGACAV-EEKLDGIRVQVHRDGDTVRVHTRTLDDITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEV A L L + DGE I+ D RP+ FQ TA R G +DVA A AT P+S
Sbjct 238 RLPEVTAAALELAGERFILDGEVISFGADGRPRSFQETAGRVGSRLDVATAAATVPVSPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD---AANFLDATLAAGH 355
FFD+L DLL+ P TER A L LVP RV R + + P + A +FL TL GH
Sbjct 298 FFDVLSVGDRDLLDLPFTERHAELARLVPEPMRVRRTLVAGPEEVRRAEDFLAETLERGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+ KA A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR G+LSN+HLGAR A
Sbjct 358 EGVVVKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGRLSNLHLGARG-AD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
GGFVM+GKTFKGMTD ML WQT R E+AV + V +RPE VVE+A DG+QRS+RYP
Sbjct 417 GGFVMLGKTFKGMTDTMLAWQTERLRELAV-EERSWGVTVRPELVVEIAYDGLQRSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARVVRYR DK P EADT++ + A +
Sbjct 476 AGVTLRFARVVRYREDKRPEEADTVETLLAAH 507
>gi|296128790|ref|YP_003636040.1| DNA ligase I, ATP-dependent Dnl1 [Cellulomonas flavigena DSM
20109]
gi|296020605|gb|ADG73841.1| DNA ligase I, ATP-dependent Dnl1 [Cellulomonas flavigena DSM
20109]
Length=522
Score = 482 bits (1240), Expect = 8e-134, Method: Compositional matrix adjust.
Identities = 295/522 (57%), Positives = 348/522 (67%), Gaps = 24/522 (4%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPD-TQLVTIIVSWLSGELPQRHIGVG 59
+LL DVA S VAAT SRL K A + +L R A D V I+ +L GEL QR G+G
Sbjct 1 MLLDDVADASAQVAATRSRLAKRAVLVDVLRRVAADGPDDVAIVSRYLGGELRQRRTGLG 60
Query 60 WAALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLL 119
W +L S+P A P+L+V VDA + + L G GS R LF+AATE EQ L
Sbjct 61 WRSLASMPGAAEVPSLSVHDVDAAFAGMAVLAGPGSATARTEAARALFAAATEREQHLLR 120
Query 120 RLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA-------A 172
L+ GELRQGA ++ DAVA+AAG+PA V+RAAML G+ A A A L A A
Sbjct 121 GLVSGELRQGALDALLLDAVAEAAGVPADVVRRAAMLAGETEAVAVAALGAASPDDARTA 180
Query 173 LDTFTLRVGRPIGPMLAQTATSVHDAL----ERHG------GTTIFEAKLDGARVQIHRA 222
LD F L VGRP+ PMLAQ+A V A+ ER G + + KLDG R+Q+HR
Sbjct 181 LDAFALTVGRPVRPMLAQSAPDVPTAVAQLGERAGTAESPAAQVVVDTKLDGIRIQVHRD 240
Query 223 NDQVRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFG- 281
D VR++TRSLDD+TAR+PE+V A LP R LV DGEA+AL D RP+ FQ TASR
Sbjct 241 GDDVRVWTRSLDDITARVPEIVAAVRGLPARALVLDGEALALDADGRPRPFQETASRSAT 300
Query 282 RSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPT 341
R ++A + P FFFD+LH DG DLL+AP ERLA LD V A H V R++T+DP
Sbjct 301 RDAELAGSATLTP---FFFDVLHVDGRDLLDAPLRERLAVLDQ-VAAPHVVARVVTADPA 356
Query 342 DAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRG 401
A A +AAG EGV+ KA A Y AGRRGA W+KVKP HTLDLVVLAVE GSGRR G
Sbjct 357 VATEHFRAVVAAGQEGVVVKAADAPYEAGRRGAAWVKVKPRHTLDLVVLAVERGSGRRAG 416
Query 402 KLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVV 461
LSNIHLGARDPATGGFVM+GKTFKGMTD ML WQT RF E+ V DG+ V LRPEQVV
Sbjct 417 TLSNIHLGARDPATGGFVMLGKTFKGMTDEMLAWQTQRFRELEVA-DDGWTVTLRPEQVV 475
Query 462 EVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAV 503
E+A DG+QRS+RYPGGLALRFARV+RYR DK AEADTI+ V
Sbjct 476 EIAFDGLQRSTRYPGGLALRFARVLRYRDDKPAAEADTIETV 517
>gi|284031333|ref|YP_003381264.1| DNA ligase I, ATP-dependent Dnl1 [Kribbella flavida DSM 17836]
gi|283810626|gb|ADB32465.1| DNA ligase I, ATP-dependent Dnl1 [Kribbella flavida DSM 17836]
Length=517
Score = 481 bits (1237), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 270/509 (54%), Positives = 329/509 (65%), Gaps = 6/509 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL DV TS ++ T SRL K IA LL AA D ++V++LSGEL QR GVGW
Sbjct 7 MLLADVVATSSSLSGTRSRLAKAKFIAELLT-AATDPVETEVVVTYLSGELRQRRTGVGW 65
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L +P PA P+LTV VD T +++ + G GSQA+R V LF ATE EQ FL +
Sbjct 66 RTLADVPEPAATPSLTVEQVDRTFAELAEIAGAGSQARRREAVNALFGRATEPEQRFLRQ 125
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
L+ GELRQGA G+MADAVA+A G+ ++ A ML G A A A L+ A L F L
Sbjct 126 LVAGELRQGALDGVMADAVAKATGIALEKIRAATMLRGAAAPVAVAALTEGEAGLAQFGL 185
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGR + PMLAQ+AT+V +A+ + G E KLDG R+Q+HR D+V +YTR+LDD+T
Sbjct 186 EVGRGVQPMLAQSATTVAEAMTKTGTPAAIEWKLDGIRIQVHRDGDRVVVYTRTLDDITD 245
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
R PEVV ATL L +V DGE IAL PD RP+ FQVT SR + A T PL+ +
Sbjct 246 RAPEVVTATLELEAEQVVLDGELIALRPDGRPEAFQVTGSR--TATRAATGPETVPLTPY 303
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEGV 358
FFDILH DG DLL ER L LVP R+ RL+T D F + GHEGV
Sbjct 304 FFDILHLDGQDLLGLGGAERHEWLSRLVPEHRRIPRLVTDDAEAGQAFFADAVKRGHEGV 363
Query 359 MAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGF 418
M K+ + Y AGRRG+GW+KVK HTLDLVVLA EWG GRR G LSN+HLGARD TG F
Sbjct 364 MVKSLSVPYEAGRRGSGWVKVKQTHTLDLVVLAAEWGHGRRTGWLSNLHLGARDEQTGEF 423
Query 419 VMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGL 478
VM+GKTFKG+TD +L WQT RF ++ V D Y V LRPE VVE+A DGVQ S RYP G+
Sbjct 424 VMLGKTFKGLTDELLRWQTERFQQLEVS-RDAYTVYLRPEIVVEIAFDGVQTSPRYPAGM 482
Query 479 ALRFARVVRYRADKDPAEADTIDAVRALY 507
ALRFARV+RYR DK + DT+ VRA++
Sbjct 483 ALRFARVLRYREDKTADQVDTVQTVRAIH 511
>gi|256390625|ref|YP_003112189.1| ATP-dependent DNA ligase [Catenulispora acidiphila DSM 44928]
gi|256356851|gb|ACU70348.1| DNA ligase I, ATP-dependent Dnl1 [Catenulispora acidiphila DSM
44928]
Length=527
Score = 481 bits (1237), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 296/524 (57%), Positives = 340/524 (65%), Gaps = 26/524 (4%)
Query 3 LHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAA 62
LHDVA TS VA TS+R K+A +A L A P+ V + V +LSGELPQR IGVGWA
Sbjct 3 LHDVATTSAAVAETSARSAKIALLAERLRTATPEE--VAVAVHYLSGELPQRQIGVGWAT 60
Query 63 LRSLPPPAPQ----------------PALTVTGVDATLSKIGTLPGKGSQAQRAALVAEL 106
LR LP PA L V VD L +IG G GSQA+R L+ L
Sbjct 61 LRELPAPADDSGGSNSSDGSDGSASTAGLEVAEVDRILEEIGKTTGAGSQARRRDLLTAL 120
Query 107 FSAATEAEQTFLLRLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAA 166
F+ AT EQ FL RLL GELRQGA G+MADAVA+AA +PAA V+RAAM GGDLAAAA
Sbjct 121 FARATAEEQAFLRRLLTGELRQGALDGVMADAVAKAADVPAAEVRRAAMFGGDLAAAAQT 180
Query 167 ----GLSGAALDTFTLRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRA 222
G+ G L L VGRPI PMLA TA V AL + E KLDG RVQIHR
Sbjct 181 ALRAGVPG--LREVGLVVGRPIQPMLAGTAEDVPTALAK-ASPAALEWKLDGIRVQIHRD 237
Query 223 NDQVRIYTRSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGR 282
D+V+++TRSLDD+T RLPE V +L V V DGEA+AL D RP+ FQ TASR G
Sbjct 238 GDRVQVFTRSLDDITERLPEAVALARSLQVTSAVLDGEALALAADGRPRPFQETASRTGS 297
Query 283 SVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD 342
DV R PL+VF FD+LH DG DL++ P+ ER L ++ P RL+T D
Sbjct 298 RRDVERMREQIPLTVFLFDLLHLDGRDLVDLPSRERSDLLASIAPPAAVAPRLVTDDADA 357
Query 343 AANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGK 402
A F L GHEGV+ K+ A Y AGRRG+GWLKVKPVHTLDLVVLA EWG GRRRG
Sbjct 358 AEAFAKDALDRGHEGVVVKSLDALYSAGRRGSGWLKVKPVHTLDLVVLAAEWGHGRRRGW 417
Query 403 LSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVE 462
LSN+HL ARDP TGGFVM+GKTFKGMTD +L WQT R + D + V +RPE VVE
Sbjct 418 LSNLHLAARDPETGGFVMLGKTFKGMTDELLTWQTERLRALQTS-ADDFAVHVRPELVVE 476
Query 463 VALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRAL 506
VA DGVQRSSRYPGG+ LRFARVVRYR DK +ADTIDAVRA+
Sbjct 477 VAFDGVQRSSRYPGGVTLRFARVVRYREDKRAEDADTIDAVRAI 520
>gi|229818773|ref|YP_002880299.1| ATP-dependent DNA ligase [Beutenbergia cavernae DSM 12333]
gi|259645310|sp|C5BW79.1|DNLI_BEUC1 RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|229564686|gb|ACQ78537.1| DNA ligase I, ATP-dependent Dnl1 [Beutenbergia cavernae DSM 12333]
Length=512
Score = 480 bits (1236), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 302/517 (59%), Positives = 350/517 (68%), Gaps = 19/517 (3%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +VA TS VAAT SRL K A IA LL RA D V I+V++++GEL QR G+GW
Sbjct 1 MLLAEVAATSDAVAATRSRLAKRAAIADLLRRAPADD--VEIVVAYVAGELRQRRTGLGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
+LR LP PA P+L V VDAT + + L G GS RAA AELF+AATE EQ L
Sbjct 59 RSLRDLPGPAEDPSLEVADVDATFAAMADLAGPGSATARAAAAAELFAAATEREQALLRG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGG-------DLAAAAAAGLSGAAL 173
L+ GELRQGA ++ DAVA AAG+PA V+RAAM G AAA + AAL
Sbjct 119 LVSGELRQGALDALVLDAVADAAGVPAPEVRRAAMFAGATGPVARAALAAAGPAEAVAAL 178
Query 174 DTFTLRVGRPIGPMLAQTATSVHDALERHGGTTI---FEAKLDGARVQIHRANDQVRIYT 230
F L VGR + PMLAQ+A V A + G + + KLDG R+Q+H+A D+VR++T
Sbjct 179 SGFMLTVGRAVRPMLAQSAPDVAAAFAKLPGGDVAVSVDVKLDGIRIQVHKAGDEVRVFT 238
Query 231 RSLDDVTARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFG-RSVDVAAA 289
RSLDD+T R+PE+VEA ALP LV DGEA+A+ RP+ FQ TASR R DVAAA
Sbjct 239 RSLDDITGRVPEIVEAVRALPAGALVLDGEALAVDAGGRPRPFQETASRSATRDADVAAA 298
Query 290 RATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDA 349
P FFFD LH DG DL++AP ERL LDA V H V RL TSDP A F A
Sbjct 299 MTLTP---FFFDCLHADGRDLVDAPLRERLEVLDA-VAGPHVVTRLTTSDPAAAEEFFAA 354
Query 350 TLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLG 409
+ G EGV+ KA Y AGRRGAGW+KVKP HTLDLVVLAVEWGSGRRRG LSNIHLG
Sbjct 355 AVRDGQEGVVVKATDTPYEAGRRGAGWIKVKPRHTLDLVVLAVEWGSGRRRGWLSNIHLG 414
Query 410 ARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQ 469
ARDPA GGFVM+GKTFKGMTD ML WQT RF E+ D + V LRPEQVVE+A DG+Q
Sbjct 415 ARDPA-GGFVMLGKTFKGMTDEMLAWQTERFLELETS-RDEWAVHLRPEQVVEIAFDGLQ 472
Query 470 RSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRAL 506
RS+RYPGGLALRFARV+RYR DK AEADTID VR L
Sbjct 473 RSTRYPGGLALRFARVLRYRDDKTAAEADTIDTVRTL 509
>gi|337764695|emb|CCB73404.1| putative DNA ligase [Streptomyces cattleya NRRL 8057]
Length=517
Score = 480 bits (1236), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 276/510 (55%), Positives = 340/510 (67%), Gaps = 13/510 (2%)
Query 5 DVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALR 64
+VA TS +VAATS+R K++ ++ L A P +++++L+G LPQR IGVGW+ L
Sbjct 5 EVARTSREVAATSARSRKISLLSGLFRDAEPSE--APVVITYLAGRLPQRRIGVGWSTLS 62
Query 65 SLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGG 124
P A +P L V V L +I ++ G+G+Q +R LV EL +AATE EQ FL+ L+ G
Sbjct 63 EPVPAAEEPRLAVLEVHLALGRIASVVGQGAQHERRRLVHELLAAATEEEQRFLVALIAG 122
Query 125 ELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLS--GAALDTFTLRVGR 182
ELRQGA + + +A A G+ A V+RA ML G L A A A L+ AL F L VGR
Sbjct 123 ELRQGALDALAVEGLAAAVGVGAGDVRRAVMLRGSLGAVAEALLARGAEALTDFRLEVGR 182
Query 183 PIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPE 242
P+ PMLA TA V +AL+R G + E KLDG RVQ+HR D VR+YTRSLD++T RLPE
Sbjct 183 PVLPMLAHTARDVAEALDRLGPCAV-EEKLDGIRVQVHRDGDLVRVYTRSLDEITDRLPE 241
Query 243 VVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDI 302
VV ALP R V DGE IAL D RP+ FQ TA R G +DVA+A+A P+ FFD+
Sbjct 242 VVAEARALPGRQAVLDGEVIALGEDGRPRAFQETAGRVGSRLDVASAQAALPVFPVFFDL 301
Query 303 LHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAAN------FLDATLAAGHE 356
L+ DG DLLE T +R A L ALVP RV R++ DP A+ F +ATLA GHE
Sbjct 302 LYVDGRDLLELSTADRHAELAALVPVPLRVRRIVAEDPGSPADRAAAEEFTEATLARGHE 361
Query 357 GVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATG 416
GV+ KA A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR G
Sbjct 362 GVVLKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARR-RNG 420
Query 417 GFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPG 476
F M+GKTFKG+TDAML+WQT R E+ V + + V +RPE VVEVA DGVQRS RYP
Sbjct 421 TFAMLGKTFKGLTDAMLEWQTERLQELTVH-DERWGVVVRPELVVEVAFDGVQRSPRYPE 479
Query 477 GLALRFARVVRYRADKDPAEADTIDAVRAL 506
G+ LRFARV+RYR DK P +ADT++ V L
Sbjct 480 GVTLRFARVLRYREDKTPDQADTVETVLGL 509
>gi|302561946|ref|ZP_07314288.1| DNA ligase [Streptomyces griseoflavus Tu4000]
gi|302479564|gb|EFL42657.1| DNA ligase [Streptomyces griseoflavus Tu4000]
Length=512
Score = 477 bits (1227), Expect = 3e-132, Method: Compositional matrix adjust.
Identities = 274/512 (54%), Positives = 338/512 (67%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +A S +VAA S+R K+A +A L A D V +++ +L+G LPQ IGVGW
Sbjct 1 MLLSRLARVSQEVAAASARSRKIALLAELFREAEADD--VPVVIPYLAGRLPQGRIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L PA +P+LTV VDA L+++ + G GSQA+RA LV L A+TE+EQ FL+
Sbjct 59 KVLSRPVAPAAEPSLTVREVDALLTELAGVSGAGSQAERARLVDGLLGASTESEQRFLIG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
LL GE+RQGA + + +A+A G PAA V+RA ML G L A A L+ AL+ F L
Sbjct 119 LLTGEVRQGALEAVAVEGLARATGAPAADVRRAVMLAGSLQTVAGALLADGPGALERFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLA +A+SV +A+E+ G + E KLDG RVQ+HR D VR++TR+LDD+T
Sbjct 179 TVGRPVLPMLAHSASSVAEAVEKLGACAV-EEKLDGIRVQVHRDGDTVRVHTRTLDDITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEV A L + DGE I+ RP+ FQ TA R G DVA A P+S
Sbjct 238 RLPEVTAAARELRGERFILDGEVISFDEAGRPRSFQETAGRVGSRADVARAALEVPVSPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD---AANFLDATLAAGH 355
FFD L DG DLL+ P TER A L LVP RV R + S P D A FL ATL GH
Sbjct 298 FFDALAVDGRDLLDLPFTERHAELARLVPEPLRVRRTLVSGPGDLGAAEEFLAATLERGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+ K A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR A
Sbjct 358 EGVVVKGVDAAYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGART-AD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
GGF M+GKTFKGMTDA+L WQT R E+AV +VV +RPE VVE+A DG+QRS+RYP
Sbjct 417 GGFAMLGKTFKGMTDALLTWQTERLRELAV-EEGSHVVTVRPELVVEIAYDGLQRSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARV+RYR DK P EAD+++A+ A +
Sbjct 476 AGVTLRFARVIRYREDKRPEEADSVEALLAAH 507
>gi|289773096|ref|ZP_06532474.1| ATP-dependent DNA ligase [Streptomyces lividans TK24]
gi|289703295|gb|EFD70724.1| ATP-dependent DNA ligase [Streptomyces lividans TK24]
Length=512
Score = 476 bits (1224), Expect = 5e-132, Method: Compositional matrix adjust.
Identities = 280/512 (55%), Positives = 336/512 (66%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +A S +VAATS+R K +A L A + V +++ +L+G LPQ IGVGW
Sbjct 1 MLLARLAQVSREVAATSARSRKTVLLAELFREA--EAADVPVVIPYLAGRLPQGRIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L PPA P LTV VDA L+++G + G GSQA+R LV EL AATE EQ FL+
Sbjct 59 KVLSRRVPPADAPTLTVRDVDARLTRVGAVSGAGSQAERTRLVGELMGAATEDEQRFLIG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSG--AALDTFTL 178
LL GE+RQGA + +A A P A V+RA ML G L A A L+ +ALD F L
Sbjct 119 LLTGEVRQGALDAAAVEGLAAATDAPPADVRRAVMLAGSLQTVAEALLADGPSALDRFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VG+P+ PMLA +A+SV +A+ + G + E KLDG RVQ+HR VRIYTR+LDD+T
Sbjct 179 TVGQPVLPMLAHSASSVAEAVGKLGAAAV-EEKLDGIRVQVHRDGGTVRIYTRTLDDITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEV EA LALP + DGEAI+L D RP+ FQ TA R G DVA A P+S
Sbjct 238 RLPEVTEAALALPGERFILDGEAISLDADGRPRSFQETAGRVGSRTDVATAARAVPVSAV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD---AANFLDATLAAGH 355
FFD+L DG DLL+ P TER A L LVP RV R + P D A FL TLA GH
Sbjct 298 FFDVLSVDGRDLLDLPLTERHAELARLVPEPLRVRRTLVHGPEDTGAAEEFLARTLARGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+ K A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR A
Sbjct 358 EGVVVKGLDAAYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGART-AD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
G F M+GKTFKGMTDA+L WQT R E+AV G+ V +RPE VVE+A DG+QRS+RYP
Sbjct 417 GSFAMLGKTFKGMTDALLTWQTERLKELAV-EEHGWGVTVRPELVVEIAYDGLQRSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARVVRYR DK P +ADT+D + A +
Sbjct 476 AGVTLRFARVVRYREDKRPEDADTVDTLLAAH 507
>gi|21219712|ref|NP_625491.1| ATP-dependent DNA ligase [Streptomyces coelicolor A3(2)]
gi|14423674|sp|Q9FCB1.1|DNLI_STRCO RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|9716186|emb|CAC01484.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
Length=512
Score = 474 bits (1221), Expect = 1e-131, Method: Compositional matrix adjust.
Identities = 280/512 (55%), Positives = 335/512 (66%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +A S +VAATS+R K +A L A + V +++ +L+G LPQ IGVGW
Sbjct 1 MLLARLAQVSREVAATSARSRKTVLLAELFREA--EAADVPVVIPYLAGRLPQGRIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L PPA P LTV VDA L+++G + G GSQA+R LV EL AATE EQ FL+
Sbjct 59 KVLSRRVPPADAPTLTVRDVDARLTRLGAVSGAGSQAERTRLVGELMGAATEDEQRFLIG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
LL GE+RQGA + +A A P A V+RA ML G L A A L+ ALD F L
Sbjct 119 LLTGEVRQGALDAAAVEGLAAATDAPPADVRRAVMLAGSLQTVAEALLADGPGALDRFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VG+P+ PMLA +A+SV +A+ + G + E KLDG RVQ+HR VRIYTR+LDD+T
Sbjct 179 TVGQPVLPMLAHSASSVAEAVGKLGAAAV-EEKLDGIRVQVHRDGGTVRIYTRTLDDITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEV EA LALP + DGEAI+L D RP+ FQ TA R G DVA A P+S
Sbjct 238 RLPEVTEAALALPGERFILDGEAISLDADGRPRSFQETAGRVGSRTDVATAARAVPVSAV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD---AANFLDATLAAGH 355
FFD+L DG DLL+ P TER A L LVP RV R + P D A FL TLA GH
Sbjct 298 FFDVLSVDGRDLLDLPLTERHAELARLVPEPLRVRRTLVHGPEDTGAAEEFLARTLARGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+ K A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR A
Sbjct 358 EGVVVKGLDAAYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGART-AD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
G F M+GKTFKGMTDA+L WQT R E+AV G+ V +RPE VVE+A DG+QRS+RYP
Sbjct 417 GSFAMLGKTFKGMTDALLTWQTERLKELAV-EEHGWGVTVRPELVVEIAYDGLQRSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARVVRYR DK P +ADT+D + A +
Sbjct 476 AGVTLRFARVVRYREDKRPEDADTVDTLLAAH 507
>gi|330469704|ref|YP_004407447.1| ATP-dependent DNA ligase [Verrucosispora maris AB-18-032]
gi|328812675|gb|AEB46847.1| ATP-dependent DNA ligase [Verrucosispora maris AB-18-032]
Length=538
Score = 474 bits (1219), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 283/513 (56%), Positives = 338/513 (66%), Gaps = 27/513 (5%)
Query 19 RLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPAPQPALTVT 78
R KV +A L R P + WL+GEL QR GVGWA LR LPPPA +P LTV
Sbjct 19 RRAKVELLAEALRRLDPVE--IAAGAGWLAGELRQRQTGVGWAGLRDLPPPAAEPTLTVG 76
Query 79 GVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMADA 138
VDA + I + G GSQA+R ALV L++AAT EQ L L GELR GA+ G++ADA
Sbjct 77 AVDAAIDAIAAVHGSGSQARRRALVHSLYAAATADEQRLLTGLFLGELRHGAQAGLLADA 136
Query 139 VAQAAGLPAATVQRAAMLGGDL--AAAAAAGLSGAALDTFTLRVGRPIGPMLAQTATSVH 196
+A+AAG+P A V+RA +L GDL A AA AAL F LRVGRP+ PMLAQ+A+SV
Sbjct 137 IARAAGVPVAAVRRALLLAGDLREVAVAALAGGAAALAGFGLRVGRPLAPMLAQSASSVD 196
Query 197 DALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATLALPVRDLV 256
+AL G + + KLDG R+Q+HR+ + ++TRSLDD+TAR+PEVV A ALP R+LV
Sbjct 197 EALAATGTPAVVDVKLDGIRIQVHRSGSDIAVFTRSLDDITARVPEVVAAVRALPARELV 256
Query 257 ADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARAT----------------------QP 294
DGEAI L RP FQ T+S R A AR+T
Sbjct 257 LDGEAIGLDETGRPLPFQQTSSAAARRGGSAGARSTGGPTAAAPVAPAVRAAAASTGTTV 316
Query 295 LSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAG 354
L+ +FFD+LH DGTDL++AP ER A L V A V R+ +P A A L AG
Sbjct 317 LTPYFFDLLHLDGTDLIDAPGRERWAVLRGTVDAGLLVGRMEVDEPQRAGEAFAAALDAG 376
Query 355 HEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPA 414
EGV+ KAP A Y AGRRGA W+KVKP HTLDLVVLAVEWGSGRR G LSN+HLGARDP
Sbjct 377 QEGVVVKAPDAPYEAGRRGAAWIKVKPRHTLDLVVLAVEWGSGRRTGWLSNLHLGARDPR 436
Query 415 TGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRY 474
TG FVM+GKTFKG+TD +L WQT RF +AV D +VV++RPEQVVE+A DGVQ SSRY
Sbjct 437 TGEFVMLGKTFKGLTDDLLRWQTERFLGLAVERGD-WVVRVRPEQVVEIAFDGVQTSSRY 495
Query 475 PGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
PGG+ALRFARVVRYR DK AEADTID VRA++
Sbjct 496 PGGVALRFARVVRYREDKSAAEADTIDTVRAIH 528
>gi|332670278|ref|YP_004453286.1| DNA ligase I, ATP-dependent Dnl1 [Cellulomonas fimi ATCC 484]
gi|332339316|gb|AEE45899.1| DNA ligase I, ATP-dependent Dnl1 [Cellulomonas fimi ATCC 484]
Length=510
Score = 473 bits (1217), Expect = 3e-131, Method: Compositional matrix adjust.
Identities = 286/500 (58%), Positives = 342/500 (69%), Gaps = 19/500 (3%)
Query 18 SRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWAALRSLPPPAPQPALTV 77
SRL K A + +L RA P+ V ++ +L+GEL QR G+GW +L SLP PA P+LTV
Sbjct 18 SRLAKRALLVDVLRRAEPED--VPVVARYLAGELRQRRTGLGWRSLASLPGPAAGPSLTV 75
Query 78 TGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMAD 137
VDA + + L G GS +R+ L AELF+AAT EQ L L+ GELRQGA ++ D
Sbjct 76 AAVDAAFAHMAQLEGPGSATERSRLAAELFAAATGPEQALLRGLVSGELRQGALDALLLD 135
Query 138 AVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA-------ALDTFTLRVGRPIGPMLAQ 190
A+A+AAG+P V+RAAML G A A L A AL FTL VGRP+ PMLAQ
Sbjct 136 ALAEAAGVPPDAVRRAAMLAGATEPVAVAALGAADPQAALEALAAFTLTVGRPVRPMLAQ 195
Query 191 TATSVHDALE-RHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATLA 249
+A V A+ GG + + KLDG R+Q+HR D VR+YTRSLDD+TAR+PE+VEA A
Sbjct 196 SAPDVATAVAGLGGGPVVVDTKLDGIRIQVHRTADDVRVYTRSLDDITARVPEIVEAVRA 255
Query 250 LPVRDLVADGEAIALCPDNRPQRFQVTASRFG-RSVDVAAARATQPLSVFFFDILHRDGT 308
+P LV DGEA+ + RP FQ TA+R + DVAAA P FFFD LH DG
Sbjct 256 VPASTLVLDGEALVVDDTGRPVPFQDTAARSATKDADVAAAVRLTP---FFFDCLHVDGR 312
Query 309 DLLEAPTTERLAALDALV-PARHRVDRLITSDPTDAANFLDATLAAGHEGVMAKAPAARY 367
DLL++P TERLA LDA V PA V RL+T+DP A ++ +AAG EGV+ KA A Y
Sbjct 313 DLLDSPLTERLAVLDATVGPA--AVTRLVTADPDAAQDWFARVVAAGQEGVVVKAADAPY 370
Query 368 LAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGGFVMVGKTFKG 427
AGRRGA W+KVKP HTLDLVVLAVE GSGRR G LSNIHLGARD GGFVM+GKTFKG
Sbjct 371 EAGRRGAAWVKVKPRHTLDLVVLAVERGSGRRSGWLSNIHLGARD-GHGGFVMLGKTFKG 429
Query 428 MTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGGLALRFARVVR 487
MTD ML QT RF E+ V DG+ V +RPEQVVE+A DGVQRS+RYPGG+ALRFARVVR
Sbjct 430 MTDEMLAQQTERFRELEVS-DDGWTVTVRPEQVVEIAFDGVQRSTRYPGGVALRFARVVR 488
Query 488 YRADKDPAEADTIDAVRALY 507
YR DK A+ADTIDAVRAL+
Sbjct 489 YRDDKSAAQADTIDAVRALH 508
>gi|297158896|gb|ADI08608.1| ATP-dependent DNA ligase [Streptomyces bingchenggensis BCW-1]
Length=512
Score = 472 bits (1215), Expect = 6e-131, Method: Compositional matrix adjust.
Identities = 274/514 (54%), Positives = 333/514 (65%), Gaps = 13/514 (2%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +VA TS +VAATS+R K+A +A LL R P +++++L+G LPQR IGVGW
Sbjct 1 MLLAEVARTSREVAATSARSEKIAALARLLSRVEPAE--APVVITYLAGRLPQRRIGVGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
A LR P PA P L V V L ++ + G G+ +R LV+ L SAATE EQ FL
Sbjct 59 AGLRVRPEPAAGPRLGVLDVHQALDRVAAVSGTGATTERKRLVSGLMSAATEDEQAFLFG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
L+GGELRQGA + + ++ A G P A V+RA MLGG L A A A L AL F L
Sbjct 119 LIGGELRQGALDALAVEGLSAAVGAPPAEVRRAVMLGGSLGAVAQALLENGPPALSEFGL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLA +A + +AL+R G + E KLDG RVQ+HR + VR+YTR+LD++T
Sbjct 179 EVGRPVLPMLAHSARDLDEALDRLGPCAV-EEKLDGIRVQVHRDKETVRVYTRTLDEITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPEVV A L V V DGE IAL D RP+ FQ + R G +DVA A A+ PL
Sbjct 238 RLPEVVAAARELAVERAVLDGEVIALDADGRPRPFQEISGRVGARLDVAGASASLPLYPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAA------NFLDATLA 352
FFD+L D DLL+ +R A L + PA RV RL+ DP D A F LA
Sbjct 298 FFDLLAVDDRDLLDLSARDRHAELARVAPAPRRVRRLVAEDPRDEATRRAAREFAADVLA 357
Query 353 AGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARD 412
GHEGVMAK+ A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR
Sbjct 358 RGHEGVMAKSLDAPYSAGRRGACWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARR 417
Query 413 PATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSS 472
P G + M+GKTFKG+TD L WQT +AV DG+VV++RPE VVEVA D +QRSS
Sbjct 418 P-DGTYAMLGKTFKGLTDKQLGWQTEALLRLAVS-DDGWVVRVRPELVVEVAFDSLQRSS 475
Query 473 RYPGGLALRFARVVRYRADKDPAEADTIDAVRAL 506
RYP G+ LRFARV+RYR DK EADT++ V AL
Sbjct 476 RYPEGVTLRFARVLRYREDKPAEEADTVETVLAL 509
>gi|111018647|ref|YP_701619.1| ATP-dependent DNA ligase [Rhodococcus jostii RHA1]
gi|123145220|sp|Q0SG75.1|DNLI_RHOSR RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|110818177|gb|ABG93461.1| DNA ligase (ATP) [Rhodococcus jostii RHA1]
Length=503
Score = 472 bits (1214), Expect = 9e-131, Method: Compositional matrix adjust.
Identities = 273/511 (54%), Positives = 328/511 (65%), Gaps = 16/511 (3%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+L + TS DV AT SR KV + +L + P V +V+WLSGEL Q IG+GW
Sbjct 1 MLFSQIVATSRDVGATRSRKVKVGALREVLIQLEPAE--VEPVVAWLSGELRQGRIGIGW 58
Query 61 AALRSLP-PPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLL 119
L +P PA PA+TV+ +D T++ + + G GS A+R L+A+LF+ T E+ FLL
Sbjct 59 RTLGDIPATPADVPAVTVSDLDGTVTAVAGISGSGSAARRRKLLADLFARTTADERDFLL 118
Query 120 RLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFT 177
RLL G+LRQGA G+M DA+A AA LP V+RA ML G L A A A G AL F
Sbjct 119 RLLTGDLRQGALEGVMTDAIAAAADLPVEPVRRAFMLSGRLPATAVAAFDGGVDALTAFR 178
Query 178 LRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVT 237
L VGRP+ PMLA A S+ DA GG E KLDGAR+Q+HR D V ++TR+L ++T
Sbjct 179 LEVGRPVRPMLASPAESLTDAWTELGGDVSVEYKLDGARIQVHRNGDDVHVFTRTLREIT 238
Query 238 ARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSV 297
+PE+VE LP V DGE +AL RP+ FQ T SRFG A + L
Sbjct 239 GSVPELVELVAGLPCTSAVFDGETLALTDSGRPRPFQETMSRFG-----AESARDLLLHP 293
Query 298 FFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEG 357
+FFD LH DG DLL+AP ERLAAL+ + P +HR+ LI D AA D LAAGHEG
Sbjct 294 YFFDCLHLDGVDLLDAPLEERLAALERVAP-QHRIPGLIRPDSDGAATHFDDALAAGHEG 352
Query 358 VMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGG 417
VM K+ AA Y AGRRG W KVKP HTLDLVVL EWG GRR G LSN+HLGARDP G
Sbjct 353 VMVKSLAAPYAAGRRGRAWQKVKPEHTLDLVVLGAEWGYGRRTGYLSNLHLGARDPDGGE 412
Query 418 FVMVGKTFKGMTDAMLDWQTTRF--HEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
+MVGKTFKG+TDA+L WQT F HE D + V L P+ VVE+ LDGVQ S+RYP
Sbjct 413 PIMVGKTFKGLTDALLQWQTDEFPRHE---RDRDDHTVYLHPDLVVEIELDGVQVSTRYP 469
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRAL 506
GGLALRFARV+RYR DK AEADTIDAVRAL
Sbjct 470 GGLALRFARVLRYRPDKTAAEADTIDAVRAL 500
>gi|152968259|ref|YP_001364043.1| ATP-dependent DNA ligase [Kineococcus radiotolerans SRS30216]
gi|224487886|sp|A6WG40.1|DNLI_KINRD RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|151362776|gb|ABS05779.1| DNA ligase I, ATP-dependent Dnl1 [Kineococcus radiotolerans SRS30216]
Length=503
Score = 469 bits (1206), Expect = 7e-130, Method: Compositional matrix adjust.
Identities = 284/509 (56%), Positives = 338/509 (67%), Gaps = 11/509 (2%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAP-DTQLVTIIVSWLSGELPQRHIGVG 59
+LL DV TS VAAT SR KVA IA LL P D +L ++ ++L G L QR G+G
Sbjct 1 MLLADVVATSTAVAATRSRTAKVAAIAGLLRGLDPADAELTAVVAAYLGGSLRQRRTGLG 60
Query 60 WAALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLL 119
+L LP PA + +L V VD ++ L G GS +RAA VA+LF+ AT EQ +L
Sbjct 61 GRSLSGLPAPAGEASLEVAEVDRRFEEVAALSGPGSAGRRAAAVADLFARATGEEQRWLR 120
Query 120 RLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGAA--LDTFT 177
++ GELRQGA ++ DA A AG+P V+RAAML G A A L G A L F
Sbjct 121 GVVAGELRQGALDALVQDAAAAVAGVPGPDVRRAAMLAGSTVQAVVAALRGGAAELAGFG 180
Query 178 LRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVT 237
L VGRP+ PMLA + TSV +A+ G + KLDG R+Q+HR + VRI TR+L+D+T
Sbjct 181 LHVGRPLLPMLAASTTSVAEAVAGFAGPVAVDTKLDGIRIQVHRGPEGVRIATRTLEDIT 240
Query 238 ARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSV 297
ARLPEVVE LP R V DGEA+ L RP+ FQ TASR + A+ A P
Sbjct 241 ARLPEVVEVVRELPARAFVLDGEALVLDGSGRPKAFQDTASRTAQ----ASGDAVVP--- 293
Query 298 FFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEG 357
+FFD+LH DG DLL+ ERLAALD VP R R RL+T+DP AA F LA GHEG
Sbjct 294 YFFDVLHLDGADLLDVALRERLAALDGFVPPRWRTPRLVTADPAAAAEFAAQALAGGHEG 353
Query 358 VMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGG 417
V+ K + Y AGRRG W+KVKPVHTLDLVVLAVE GSGRR G LSN+HLGARDPATGG
Sbjct 354 VVVKDLDSPYAAGRRGGAWVKVKPVHTLDLVVLAVERGSGRRAGWLSNVHLGARDPATGG 413
Query 418 FVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYPGG 477
FVM+GKTFKGMTD L WQT RF E+ G DGYVV +RPEQVVEVA DG+QRS+RYPGG
Sbjct 414 FVMLGKTFKGMTDETLAWQTARFRELQTG-EDGYVVTVRPEQVVEVAFDGLQRSTRYPGG 472
Query 478 LALRFARVVRYRADKDPAEADTIDAVRAL 506
+ALRFARVVRYR DK AEADT++ V AL
Sbjct 473 VALRFARVVRYREDKTAAEADTLETVLAL 501
>gi|226360758|ref|YP_002778536.1| ATP-dependent DNA ligase [Rhodococcus opacus B4]
gi|254778145|sp|C1AX87.1|DNLI_RHOOB RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|226239243|dbj|BAH49591.1| ATP-dependent DNA ligase LigB [Rhodococcus opacus B4]
Length=503
Score = 468 bits (1203), Expect = 1e-129, Method: Compositional matrix adjust.
Identities = 271/511 (54%), Positives = 327/511 (64%), Gaps = 16/511 (3%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+L + TS DV AT SR KVA + L R + V +V+WLSGEL Q IG+GW
Sbjct 1 MLFSQIVATSRDVGATRSRKVKVATLREALTRL--EQAEVEPVVAWLSGELRQGRIGIGW 58
Query 61 AALRSLP-PPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLL 119
+ +P PA A+TV+ VD T+S + + G GS A+R L+A+LF+ T E+ FLL
Sbjct 59 RTVADIPATPADVAAVTVSEVDGTISAVAEVSGSGSAARRRELLADLFARTTADERDFLL 118
Query 120 RLLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFT 177
RLL G+LRQGA G+M DA+A AA LP V+RA ML G L A A A G AL F
Sbjct 119 RLLTGDLRQGALEGVMTDAIAAAADLPIEPVRRAFMLSGRLPATAVAAFDGGVDALTAFR 178
Query 178 LRVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVT 237
L VGRP+ PMLA A S+ DA GG E KLDGAR+Q+HR D+VRI+TR+L ++T
Sbjct 179 LEVGRPVRPMLASPAESLADAWSELGGDVSVEYKLDGARIQVHRNGDEVRIFTRTLREIT 238
Query 238 ARLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSV 297
+PE+V LP V DGE +AL RP+ FQ T SRFG A + L
Sbjct 239 GSVPELVALVARLPCTSAVFDGETLALTDSGRPRPFQETMSRFG-----AESARDLLLHP 293
Query 298 FFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANFLDATLAAGHEG 357
+FFD LH DG DLL++P ERL AL+ + P +HR+ LI D AA D LAAGHEG
Sbjct 294 YFFDCLHLDGVDLLDSPLEERLKALERVAP-QHRIPGLIRPDSEGAATHFDDALAAGHEG 352
Query 358 VMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGG 417
VM K+ A Y AGRRG W KVKP HTLDLVVL EWG GRR G LSN+HLGARDP G
Sbjct 353 VMVKSLTAPYAAGRRGRAWQKVKPEHTLDLVVLGAEWGYGRRTGYLSNLHLGARDPDGGA 412
Query 418 FVMVGKTFKGMTDAMLDWQTTRF--HEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
+MVGKTFKG+TDA+L WQT F HE A D + V L P+ VVE+ LDGVQ S+RYP
Sbjct 413 PIMVGKTFKGLTDALLQWQTDEFPRHERA---RDDHTVYLHPDLVVEIELDGVQVSTRYP 469
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRAL 506
GGLALRFARV+RYR DK A+ADTIDAVR+L
Sbjct 470 GGLALRFARVLRYRPDKTAADADTIDAVRSL 500
>gi|297190850|ref|ZP_06908248.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC
25486]
gi|297150641|gb|EFH30703.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC
25486]
Length=511
Score = 468 bits (1203), Expect = 2e-129, Method: Compositional matrix adjust.
Identities = 274/512 (54%), Positives = 336/512 (66%), Gaps = 12/512 (2%)
Query 2 LLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGWA 61
+L VA S +VAATS+R K+A +A L A P+ V +++S+L+G +PQ IG+GW+
Sbjct 1 MLARVAEVSREVAATSARSRKIAALADLFAEALPED--VALVISYLAGRVPQGRIGIGWS 58
Query 62 ALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRL 121
L+ PPA P+LTV DA L+ + + G G+QA+R V L SAAT EQ FL+RL
Sbjct 59 VLKESVPPAAVPSLTVGEADAALTALAQVSGPGAQAERRTRVHRLMSAATAEEQEFLVRL 118
Query 122 LGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDL--AAAAAAGLSGAALDTFTLR 179
L GE+RQGA + +AVA+AAG P+A V+RA ML G L AAA AAL+ F LR
Sbjct 119 LTGEVRQGALDAVALEAVAKAAGAPSADVRRAVMLEGSLPRVAAALLAGGPAALEEFRLR 178
Query 180 VGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTAR 239
VG P+ PMLA +A SV +A G + E KLDG RVQ+HR VRI+TRSLDD+T R
Sbjct 179 VGNPVQPMLAHSAKSVTEAAGTLGAACVVEEKLDGIRVQVHREGSDVRIFTRSLDDITDR 238
Query 240 LPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFF 299
LPEV + T + + DGE IA+ PD RP FQ ASR G +DV AAR T PL +
Sbjct 239 LPEVAQRTREMTGDRFILDGEVIAMAPDGRPVPFQDIASRVGSRLDVEAARTTLPLYPVY 298
Query 300 FDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTD------AANFLDATLAA 353
FD+L DG +L+ P ER L LVP RV R + DP+D A F ATL
Sbjct 299 FDVLAADGEPVLDLPGRERHRILARLVPEPTRVRRTVVEDPSDPAQVAAAEEFFTATLDR 358
Query 354 GHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDP 413
GHEGV+ KA A Y AGRRG WLKVKPVHTLDLVVLAVE G GRR G LSN+HLGAR
Sbjct 359 GHEGVLVKALDAPYSAGRRGRSWLKVKPVHTLDLVVLAVERGHGRRTGLLSNLHLGARS- 417
Query 414 ATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSR 473
A GGFVM+GKTFKG+TD ML QT E+AV DG+ V++RPE VVE+A DG+QRS+R
Sbjct 418 ADGGFVMLGKTFKGLTDEMLRRQTDMLRELAV-EDDGFTVRVRPELVVEIAYDGLQRSTR 476
Query 474 YPGGLALRFARVVRYRADKDPAEADTIDAVRA 505
YP G+ALRFARV+R+R DK AEADTI+ V A
Sbjct 477 YPAGVALRFARVLRHRPDKSAAEADTIEQVLA 508
>gi|289751736|ref|ZP_06511114.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis T92]
gi|289692323|gb|EFD59752.1| ATP-dependent DNA ligase ligB [Mycobacterium tuberculosis T92]
Length=233
Score = 467 bits (1202), Expect = 2e-129, Method: Compositional matrix adjust.
Identities = 233/233 (100%), Positives = 233/233 (100%), Gaps = 0/233 (0%)
Query 275 VTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDR 334
VTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDR
Sbjct 1 VTASRFGRSVDVAAARATQPLSVFFFDILHRDGTDLLEAPTTERLAALDALVPARHRVDR 60
Query 335 LITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEW 394
LITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEW
Sbjct 61 LITSDPTDAANFLDATLAAGHEGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEW 120
Query 395 GSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQ 454
GSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQ
Sbjct 121 GSGRRRGKLSNIHLGARDPATGGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQ 180
Query 455 LRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 507
LRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY
Sbjct 181 LRPEQVVEVALDGVQRSSRYPGGLALRFARVVRYRADKDPAEADTIDAVRALY 233
>gi|29833678|ref|NP_828312.1| ATP-dependent DNA ligase [Streptomyces avermitilis MA-4680]
gi|81716229|sp|Q826P6.1|DNLI_STRAW RecName: Full=Probable DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [ATP]
gi|29610802|dbj|BAC74847.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
Length=512
Score = 467 bits (1201), Expect = 3e-129, Method: Compositional matrix adjust.
Identities = 283/512 (56%), Positives = 341/512 (67%), Gaps = 10/512 (1%)
Query 1 VLLHDVAITSMDVAATSSRLTKVARIAALLHRAAPDTQLVTIIVSWLSGELPQRHIGVGW 60
+LL +A S +VAATS+R K+A +A L A D V I++ +L+G LPQ +G+GW
Sbjct 1 MLLSRLAHVSREVAATSARSRKIALLAELFRDA--DADDVPIVIPYLAGRLPQGRLGIGW 58
Query 61 AALRSLPPPAPQPALTVTGVDATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLR 120
L PA +P+LTV VDA L+ +G + G GSQA R L+ EL +AAT+ EQ FL
Sbjct 59 KLLGRPVTPASEPSLTVRDVDARLTAVGAVTGTGSQAGRGRLMGELMAAATDVEQAFLRG 118
Query 121 LLGGELRQGAKGGIMADAVAQAAGLPAATVQRAAMLGGDLAAAAAAGLSGA--ALDTFTL 178
LL GE+RQGA + + +A+A G P A V+RA ML G L A A L+ ALD F L
Sbjct 119 LLTGEVRQGALDAVAVEGLAEATGAPPADVRRAVMLAGSLQTVARALLAEGPGALDGFRL 178
Query 179 RVGRPIGPMLAQTATSVHDALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTA 238
VGRP+ PMLA TA SV +A+ + G + E KLDG RVQ+HR D VRIYTR+LDD+T
Sbjct 179 TVGRPVLPMLAHTAGSVAEAVGKLGACAV-EEKLDGIRVQLHRDGDHVRIYTRTLDDITD 237
Query 239 RLPEVVEATLALPVRDLVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVF 298
RLPE+ A L L + DGE IAL + RP+ FQ A R G VDVAAA A+ P+S
Sbjct 238 RLPELTAAALELKGDRFILDGEVIALDGNGRPRSFQEIAGRVGSRVDVAAAAASVPVSPV 297
Query 299 FFDILHRDGTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAA---NFLDATLAAGH 355
FFD L DG DLL+ P TER A L LVP RV R + S P D A FL TLA GH
Sbjct 298 FFDALSVDGRDLLDLPFTERHAELARLVPEPLRVRRALVSGPDDGAAAETFLADTLARGH 357
Query 356 EGVMAKAPAARYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPAT 415
EGV+ KA A Y AGRRGA WLKVKPVHTLDLVVLA EWG GRR GKLSN+HLGAR A
Sbjct 358 EGVVVKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGAR-AAD 416
Query 416 GGFVMVGKTFKGMTDAMLDWQTTRFHEIAVGPTDGYVVQLRPEQVVEVALDGVQRSSRYP 475
G F M+GKTFKGMTDAML WQT R E+AV +G VV +RPE VVE+A DG+Q+S+RYP
Sbjct 417 GSFAMLGKTFKGMTDAMLTWQTERLTELAV-EENGSVVTVRPELVVEIAYDGLQKSTRYP 475
Query 476 GGLALRFARVVRYRADKDPAEADTIDAVRALY 507
G+ LRFARVVRYR DK PAEADT++ + A +
Sbjct 476 AGVTLRFARVVRYREDKTPAEADTVETLLAAH 507
Lambda K H
0.320 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1098731157348
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40