BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3066 Length=202 Score E Sequences producing significant alignments: (Bits) Value gi|15610203|ref|NP_217582.1| DeoR family transcriptional regulat... 394 3e-108 gi|240170695|ref|ZP_04749354.1| transcriptional regulatory prote... 256 1e-66 gi|118618738|ref|YP_907070.1| transcriptional regulatory protein... 248 3e-64 gi|259090351|pdb|3IUV|A Chain A, The Structure Of A Member Of Te... 112 4e-23 gi|337763592|emb|CCB72302.1| Transcriptional regulatory protein ... 111 5e-23 gi|291440360|ref|ZP_06579750.1| TetR-family transcriptional regu... 111 6e-23 gi|21220404|ref|NP_626183.1| hypothetical protein SCO1917 [Strep... 111 6e-23 gi|300508406|pdb|3HTA|A Chain A, Crystal Structure Of Multidrug ... 111 6e-23 gi|297198854|ref|ZP_06916251.1| ebrA repressor [Streptomyces svi... 108 3e-22 gi|300789381|ref|YP_003769672.1| TetR family transcriptional reg... 107 1e-21 gi|302533771|ref|ZP_07286113.1| ebrA repressor [Streptomyces sp.... 105 5e-21 gi|294628707|ref|ZP_06707267.1| transcriptional regulatory prote... 103 1e-20 gi|302550604|ref|ZP_07302946.1| TetR family transcriptional regu... 102 2e-20 gi|290961362|ref|YP_003492544.1| repressor [Streptomyces scabiei... 100 9e-20 gi|29832878|ref|NP_827512.1| TetR family transcriptional regulat... 99.4 3e-19 gi|320011459|gb|ADW06309.1| transcriptional regulator, TetR fami... 98.2 6e-19 gi|302546314|ref|ZP_07298656.1| TetR family transcriptional regu... 97.4 1e-18 gi|294632913|ref|ZP_06711472.1| conserved hypothetical protein [... 96.7 2e-18 gi|326780054|ref|ZP_08239319.1| transcriptional regulator, TetR ... 95.9 3e-18 gi|344998942|ref|YP_004801796.1| TetR family transcriptional reg... 94.0 1e-17 gi|328881595|emb|CCA54834.1| Transcriptional regulator, TetR fam... 93.6 1e-17 gi|262201944|ref|YP_003273152.1| TetR family transcriptional reg... 91.3 7e-17 gi|182439398|ref|YP_001827117.1| TetR family transcriptional reg... 90.9 1e-16 gi|254384161|ref|ZP_04999505.1| ebrA repressor [Streptomyces sp.... 88.2 6e-16 gi|257057139|ref|YP_003134971.1| hypothetical protein Svir_31710... 88.2 6e-16 gi|269219739|ref|ZP_06163593.1| putative transcriptional regulat... 87.8 8e-16 gi|296137890|ref|YP_003645133.1| TetR family transcriptional reg... 87.4 1e-15 gi|326383954|ref|ZP_08205638.1| regulatory protein TetR [Gordoni... 86.7 2e-15 gi|333920137|ref|YP_004493718.1| hypothetical protein AS9A_2471 ... 85.9 3e-15 gi|295839578|ref|ZP_06826511.1| TetR family transcriptional regu... 84.3 8e-15 gi|318056391|ref|ZP_07975114.1| hypothetical protein SSA3_00505 ... 83.2 2e-14 gi|311280270|ref|YP_003942501.1| transcriptional regulator, TetR... 83.2 2e-14 gi|302518364|ref|ZP_07270706.1| ebrA repressor [Streptomyces sp.... 82.8 3e-14 gi|333027966|ref|ZP_08456030.1| hypothetical protein STTU_5470 [... 82.0 4e-14 gi|260597241|ref|YP_003209812.1| HTH-type transcriptional regula... 82.0 5e-14 gi|157146502|ref|YP_001453820.1| hypothetical protein CKO_02263 ... 81.6 6e-14 gi|271969071|ref|YP_003343267.1| TetR family transcriptional reg... 80.9 9e-14 gi|146310995|ref|YP_001176069.1| TetR family transcriptional reg... 80.5 1e-13 gi|239986856|ref|ZP_04707520.1| TetR family transcriptional regu... 80.5 1e-13 gi|134103635|ref|YP_001109296.1| putative DeoR-type transcriptio... 80.5 1e-13 gi|170768984|ref|ZP_02903437.1| transcriptional regulator, TetR ... 79.3 3e-13 gi|297560633|ref|YP_003679607.1| TetR family transcriptional reg... 79.3 3e-13 gi|257057801|ref|YP_003135633.1| hypothetical protein Svir_38620... 78.2 7e-13 gi|302531180|ref|ZP_07283522.1| predicted protein [Streptomyces ... 77.8 8e-13 gi|283784609|ref|YP_003364474.1| TetR family transcriptional reg... 77.8 8e-13 gi|336249446|ref|YP_004593156.1| putative DeoR-type transcriptio... 77.8 9e-13 gi|324112718|gb|EGC06694.1| tetR family protein regulatory prote... 77.8 9e-13 gi|134101872|ref|YP_001107533.1| TetR family transcriptional reg... 77.4 1e-12 gi|333955922|gb|EGL73629.1| hypothetical protein CSE899_05067 [C... 77.4 1e-12 gi|345014301|ref|YP_004816655.1| TetR family transcriptional reg... 77.4 1e-12 >gi|15610203|ref|NP_217582.1| DeoR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|15842635|ref|NP_337672.1| hypothetical protein MT3151 [Mycobacterium tuberculosis CDC1551] gi|31794245|ref|NP_856738.1| DeoR family transcriptional regulator [Mycobacterium bovis AF2122/97] 78 more sequence titles Length=202 Score = 394 bits (1013), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%) Query 1 LTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA 60 +TAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA Sbjct 1 MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA 60 Query 61 LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH 120 LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH Sbjct 61 LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH 120 Query 121 RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR 180 RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR Sbjct 121 RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR 180 Query 181 LVADGPEQREVGQSAHAGRTPD 202 LVADGPEQREVGQSAHAGRTPD Sbjct 181 LVADGPEQREVGQSAHAGRTPD 202 >gi|240170695|ref|ZP_04749354.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=185 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/184 (76%), Positives = 157/184 (86%), Gaps = 0/184 (0%) Query 1 LTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA 60 +TA RRPRDP GRRQAI+EAA RVIAR GLG L+HRRVAAEA+VPVGSTTYYF+DL Sbjct 1 MTAEPHRRPRDPVGRRQAIIEAAGRVIARHGLGELTHRRVAAEADVPVGSTTYYFSDLGT 60 Query 61 LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH 120 LREAALAHAA ++AD L QWR DLD+ DL TLARLT YL D DR+RTL+ELY+AA+H Sbjct 61 LREAALAHAATSAADWLEQWRRDLDRAADLPVTLARLTAEYLTDPDRHRTLSELYVAASH 120 Query 121 RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR 180 RPELQ LARLWP+GL+ALLEPRIGRRAA AVTVF DGAT+H+LITGTPLS + LTDA+AR Sbjct 121 RPELQSLARLWPEGLVALLEPRIGRRAAEAVTVFLDGATVHSLITGTPLSVEALTDAVAR 180 Query 181 LVAD 184 L AD Sbjct 181 LAAD 184 >gi|118618738|ref|YP_907070.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|183981626|ref|YP_001849917.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|118570848|gb|ABL05599.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|183174952|gb|ACC40062.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=192 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/184 (69%), Positives = 148/184 (81%), Gaps = 0/184 (0%) Query 1 LTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA 60 +T +RRPRDPAGRRQ I+EAA R+IAR GLG L+HRRVAAEA+VPVGSTTYYF+DL Sbjct 1 MTREVERRPRDPAGRRQTIIEAAGRLIARHGLGDLTHRRVAAEADVPVGSTTYYFSDLGE 60 Query 61 LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH 120 LREAALAH A ++ D L W DLD+ D+ ATLARLT YL D DR+RTLNELY+AA+H Sbjct 61 LREAALAHVATSATDWLEHWERDLDESTDIPATLARLTADYLTDPDRHRTLNELYVAASH 120 Query 121 RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR 180 +PELQ LA+LW DGL+ALLEPRIG RAA V++F DGATLHA+I+ TPL LTDAIAR Sbjct 121 QPELQSLAQLWSDGLVALLEPRIGPRAARVVSIFLDGATLHAMISDTPLDAPALTDAIAR 180 Query 181 LVAD 184 LV + Sbjct 181 LVGN 184 >gi|259090351|pdb|3IUV|A Chain A, The Structure Of A Member Of Tetr Family (Sco1917) From Streptomyces Coelicolor A3 Length=201 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/180 (42%), Positives = 102/180 (57%), Gaps = 2/180 (1%) Query 4 GSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALRE 63 G R DP RRQ I++AA RV+ ++G+ GLSHR VAAEA+VP+GSTTY+F LD L Sbjct 1 GHXPRRHDPE-RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLXV 59 Query 64 AALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRP 122 AAL A A ++A + D + DL+ LAR+ +L D+ ELY+AA RP Sbjct 60 AALRQANEGFARVVAAHPALSDPEADLSGELARVLGEWLGGDRTGVELEYELYLAALRRP 119 Query 123 ELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 L+ +A W +G+ ALL R A A+ DG L L+T TP + + + RL+ Sbjct 120 ALRPVAAEWAEGVGALLAARTDPTTARALVAVLDGICLQVLLTDTPYDEEYAREVLTRLI 179 >gi|337763592|emb|CCB72302.1| Transcriptional regulatory protein [Streptomyces cattleya NRRL 8057] Length=194 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/170 (49%), Positives = 97/170 (58%), Gaps = 0/170 (0%) Query 18 AIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLL 77 AIVEAA +I G+ GLSHR VAA A VP+G+TTYYF DL L AAL HAA + L Sbjct 20 AIVEAACALIPDTGIHGLSHRLVAARAGVPLGATTYYFTDLADLSRAALEHAAARWTEEL 79 Query 78 AQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLA 137 W + L D+ A LA L Y D+ R ELY AAA RPEL+ LA LW DGL+ Sbjct 80 RAWATALRDSDDVPAALAALAARYAEDRPRALIEAELYTAAARRPELRPLAHLWFDGLVR 139 Query 138 LLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADGPE 187 +L AA A + DGA L AL P+ ELT A+ L+ DGPE Sbjct 140 VLRAHTTPAAATATALLLDGALLRALRDEDPVDVTELTAALRTLMGDGPE 189 >gi|291440360|ref|ZP_06579750.1| TetR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291343255|gb|EFE70211.1| TetR-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length=181 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/176 (43%), Positives = 98/176 (56%), Gaps = 2/176 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+ R G+ GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 4 RRHDPE-RRQRIIDAAIRVVGRGGIAGLSHRSAAAEADVPLGSTTYHFKTLDELLVAALR 62 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQR 126 A +A R+ +D DLAA LA L +LA + L ELY+AA RP L+ Sbjct 63 QTNEGFAKAVAARRTLMDPRTDLAAELAALIGEWLAGERTGVELEYELYLAALRRPALRP 122 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 +A W + + LL R A A+ DG L L+TG P + + +AR+V Sbjct 123 VAAEWCEEVTELLSRRTDPVTARALVALMDGICLQVLLTGGPYDEEYAREMMARIV 178 >gi|21220404|ref|NP_626183.1| hypothetical protein SCO1917 [Streptomyces coelicolor A3(2)] gi|289772362|ref|ZP_06531740.1| ebrA repressor [Streptomyces lividans TK24] gi|5420026|emb|CAB46418.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|16604268|gb|AAK95485.1| ebrA repressor [Streptomyces lividans] gi|289702561|gb|EFD69990.1| ebrA repressor [Streptomyces lividans TK24] Length=197 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/169 (42%), Positives = 98/169 (58%), Gaps = 1/169 (0%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA RV+ ++G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL A A Sbjct 9 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGFA 68 Query 75 DLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPELQRLARLWPD 133 ++A + D + DL+ LAR+ +L D+ ELY+AA RP L+ +A W + Sbjct 69 RVVAAHPALSDPEADLSGELARVLGEWLGGDRTGVELEYELYLAALRRPALRPVAAEWAE 128 Query 134 GLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 G+ ALL R A A+ DG L L+T TP + + + RL+ Sbjct 129 GVGALLAARTDPTTARALVAVLDGICLQVLLTDTPYDEEYAREVLTRLI 177 >gi|300508406|pdb|3HTA|A Chain A, Crystal Structure Of Multidrug Binding Protein Ebrr Complexed With Imidazole gi|300508407|pdb|3HTA|B Chain B, Crystal Structure Of Multidrug Binding Protein Ebrr Complexed With Imidazole gi|300508408|pdb|3HTA|C Chain C, Crystal Structure Of Multidrug Binding Protein Ebrr Complexed With Imidazole 7 more sequence titles Length=217 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/169 (42%), Positives = 98/169 (58%), Gaps = 1/169 (0%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA RV+ ++G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL A A Sbjct 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGFA 88 Query 75 DLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPELQRLARLWPD 133 ++A + D + DL+ LAR+ +L D+ ELY+AA RP L+ +A W + Sbjct 89 RVVAAHPALSDPEADLSGELARVLGEWLGGDRTGVELEYELYLAALRRPALRPVAAEWAE 148 Query 134 GLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 G+ ALL R A A+ DG L L+T TP + + + RL+ Sbjct 149 GVGALLAARTDPTTARALVAVLDGICLQVLLTDTPYDEEYAREVLTRLI 197 >gi|297198854|ref|ZP_06916251.1| ebrA repressor [Streptomyces sviceus ATCC 29083] gi|197711225|gb|EDY55259.1| ebrA repressor [Streptomyces sviceus ATCC 29083] Length=183 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/179 (42%), Positives = 95/179 (54%), Gaps = 2/179 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+ R+GL GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 4 RRHDPE-RRQRIIDAAIRVVGRKGLAGLSHRSAAAEADVPLGSTTYHFKSLDELMVAALC 62 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPELQR 126 A+ A +A + D DL A LAR+ +L D+ ELY+AA RP L+ Sbjct 63 QASEGFAKAVAAHGALDDPGGDLPAGLARVLGDWLGGDRTGVELEYELYLAALRRPALRP 122 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADG 185 +A W D L L R A A+ DG L L+TG P + R++ G Sbjct 123 VAAEWADDLAERLAHRTDPVTARALVALMDGICLQVLLTGAPYDEGYAREVFGRVIPAG 181 >gi|300789381|ref|YP_003769672.1| TetR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798895|gb|ADJ49270.1| TetR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340531028|gb|AEK46233.1| TetR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=192 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/181 (40%), Positives = 96/181 (54%), Gaps = 3/181 (1%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 R P DP RR I +AA V+A++G+ G++HR VAA A VP+GSTTY+F LD L E AL Sbjct 12 RGPNDPE-RRARIAKAAIEVVAQRGIDGVTHRAVAAAAGVPLGSTTYHFATLDDLLEVAL 70 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQ 125 AA + L +W S L D D AA LA L Y+ +Q R + +LY+AA HRP L+ Sbjct 71 HEAAERNVHALKEWESALPPDTDFAAALADLVMGYINEQYRDTVVEYDLYVAALHRPALR 130 Query 126 RLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADG 185 + + W D L+A R + F G + A + P E + + R DG Sbjct 131 KASAAWDDALIAFFGSRTDPLTGRLLAGLFCGLLMQAAL-ADPRPNREEIETLFRRAIDG 189 Query 186 P 186 P Sbjct 190 P 190 >gi|302533771|ref|ZP_07286113.1| ebrA repressor [Streptomyces sp. C] gi|302442666|gb|EFL14482.1| ebrA repressor [Streptomyces sp. C] Length=187 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/179 (42%), Positives = 99/179 (56%), Gaps = 11/179 (6%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA RV++ +G+ GLSHR AAEA+VP+GSTTY+F LD L AAL A A A Sbjct 12 RRQRIIDAAIRVVSAKGIAGLSHRSAAAEADVPLGSTTYHFETLDDLLVAALRQANEAYA 71 Query 75 DLLAQWRSDLDKDRDLAATLARLT-TVYLADQDRYRTLNELYMAAAHRPELQRLARLWPD 133 L + + DLA LARL V AD+ R ELY+AA RP L+ +A W + Sbjct 72 PALV-----IREGEDLAGALARLLGEVLEADRGRAELEYELYLAALRRPALRPVAAEWCE 126 Query 134 GLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVAD-----GPE 187 + A L A A+ DG +L L+TGTP + + + R+VA GPE Sbjct 127 AVTAALAEHTDPLTARALVAVMDGISLQVLLTGTPYDGAYVRELLRRVVAGADGRRGPE 185 >gi|294628707|ref|ZP_06707267.1| transcriptional regulatory protein [Streptomyces sp. e14] gi|292832040|gb|EFF90389.1| transcriptional regulatory protein [Streptomyces sp. e14] Length=179 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/165 (43%), Positives = 91/165 (56%), Gaps = 1/165 (0%) Query 19 IVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLA 78 I++AA RV+ R G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL + L+A Sbjct 14 IIDAAIRVVRRAGIAGLSHRTVAAEADVPLGSTTYHFATLDELMVAALRQSGEGFCRLVA 73 Query 79 QWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQRLARLWPDGLLA 137 D DLA LA +LA L ELY+AA RP L+ +A W D L A Sbjct 74 AREGLTDPGGDLAGELAAALGEWLAAGRAGAELEYELYLAALRRPALRPVAAGWADDLAA 133 Query 138 LLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 LL PR A A+ DG L+ L+TG + +A+AR++ Sbjct 134 LLAPRTDPLTARALVALMDGICLNVLLTGGSYDEEYAREALARMI 178 >gi|302550604|ref|ZP_07302946.1| TetR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302468222|gb|EFL31315.1| TetR family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length=183 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/181 (41%), Positives = 95/181 (53%), Gaps = 2/181 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+ +G+ GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 4 RRHDPE-RRQRIIDAAIRVVGAKGIAGLSHRSAAAEADVPLGSTTYHFKTLDELLVAALR 62 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLA-DQDRYRTLNELYMAAAHRPELQR 126 A A ++A D DLAA LA +LA D+ ELY+AA RP L+ Sbjct 63 QANEGFAKVIASRGGLEDPRTDLAAELAGSMGEWLAGDRTGVELEYELYLAALRRPALRP 122 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADGP 186 +A W + + L R A A+ DG L L+TG P + + R+VA Sbjct 123 VADEWAEQVAESLSRRTDPVTARALVAVVDGICLQVLLTGVPYDESYAREVLGRIVAGAR 182 Query 187 E 187 E Sbjct 183 E 183 >gi|290961362|ref|YP_003492544.1| repressor [Streptomyces scabiei 87.22] gi|260650888|emb|CBG74005.1| putative repressor [Streptomyces scabiei 87.22] Length=178 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/176 (41%), Positives = 93/176 (53%), Gaps = 2/176 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+A +G+ GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 3 RRYDPE-RRQRIIDAAIRVVAERGIAGLSHRSAAAEADVPLGSTTYHFKTLDDLMVAALR 61 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPELQR 126 A A +A + D DLAA LA L + D+ ELY+AA RP L+ Sbjct 62 QANERFAKSVAAREALRDPGTDLAAELAALGGEWFTGDRTGLEVEYELYLAALRRPALRP 121 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 +A W L R A A+ DG L L+TG P + + +AR++ Sbjct 122 VADEWGRAFADCLADRTDPVTARALVALVDGICLQVLLTGAPYDEEYAREVLARVI 177 >gi|29832878|ref|NP_827512.1| TetR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29609999|dbj|BAC74047.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length=178 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/170 (42%), Positives = 94/170 (56%), Gaps = 3/170 (1%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA RV+ +G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL A A Sbjct 9 RRQRIIDAAIRVVGDKGIAGLSHRSVAAEADVPLGSTTYHFKTLDDLMVAALRQANEGFA 68 Query 75 DLLAQWRSDLDKDR-DLAATLARLTTVYLA-DQDRYRTLNELYMAAAHRPELQRLARLWP 132 ++A R L+ R DLA +A L +LA D+ ELY+AA RP L+ +A Sbjct 69 KVVAA-RGHLEDPRADLAGDIAALIGDWLAGDRTGVELEYELYLAALRRPALRPVAAECI 127 Query 133 DGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 DG + R A A+ DG L L+TG P + +ARL+ Sbjct 128 DGFAEAVARRTDPVTARALVALVDGICLQVLLTGAPYDEAYARELLARLI 177 >gi|320011459|gb|ADW06309.1| transcriptional regulator, TetR family [Streptomyces flavogriseus ATCC 33331] Length=205 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/180 (40%), Positives = 92/180 (52%), Gaps = 2/180 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RR+ I+EAA RV+ QG+ GLSHR VAAEA+VP+GSTTY+F LD L AAL Sbjct 3 RRHDPE-RRERIIEAAIRVVGAQGIAGLSHRSVAAEADVPLGSTTYHFASLDELLVAALR 61 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQR 126 A ++ + D LA L RL + + L ELY+AA RP L+ Sbjct 62 RCNENFARMVREGDGLADPAVPLADALTRLLGEWFSGGRGPMELEYELYLAALRRPVLRP 121 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADGP 186 +A W D L+ + R A A+T DG L L+TG + +ARL P Sbjct 122 VAGEWADALVEPIAHRTDPATARALTALLDGICLQVLLTGGEFDPVYTREMLARLAEGEP 181 >gi|302546314|ref|ZP_07298656.1| TetR family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463932|gb|EFL27025.1| TetR family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length=180 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/176 (41%), Positives = 94/176 (54%), Gaps = 3/176 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA V+ +G+GGLSHR VAAEA+VP+GSTTY+F LD L AAL Sbjct 4 RRYDPE-RRQRIIDAAIAVVGERGIGGLSHRAVAAEADVPLGSTTYHFATLDDLLVAALD 62 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPELQR 126 + +W D D LA +A L + L D+ R ELY+AA R ++ Sbjct 63 QVNAEWLADMERWERDAPPDAPLADGMAGLMEMLLTGDRKRLELEYELYLAALRRTSVRP 122 Query 127 LARLWPDGLLALLEPRIGR-RAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 LA + D + LL R G A A+ FDG L L+TG +E A AR+ Sbjct 123 LAAAFLDRMTELLVRRTGDVDVARAINALFDGMLLQVLLTGREFDREEARAAFARV 178 >gi|294632913|ref|ZP_06711472.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292830694|gb|EFF89044.1| conserved hypothetical protein [Streptomyces sp. e14] Length=192 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/165 (44%), Positives = 89/165 (54%), Gaps = 0/165 (0%) Query 19 IVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLA 78 IVEAA ++ GLGGL+HR VA A V +GSTT+YF LD LREAAL H A+ LA Sbjct 16 IVEAAAALVIEVGLGGLTHRMVANRAQVALGSTTHYFATLDDLREAALRHLADQVDSGLA 75 Query 79 QWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLAL 138 + + LD+ A LA YLAD R L AA P + LA D L+AL Sbjct 76 EVKRSLDEHGADPAVLAEALFAYLADTHLVRADTCLLSAAVVDPHFRSLALQTFDRLVAL 135 Query 139 LEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVA 183 + +G R A A+ VF GA HA + PL LT+ I RL+A Sbjct 136 MSAYVGVREATAIAVFAQGAAAHAALHEEPLDVASLTEVITRLLA 180 >gi|326780054|ref|ZP_08239319.1| transcriptional regulator, TetR family [Streptomyces cf. griseus XylebKG-1] gi|326660387|gb|EGE45233.1| transcriptional regulator, TetR family [Streptomyces griseus XylebKG-1] Length=198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/193 (39%), Positives = 93/193 (49%), Gaps = 19/193 (9%) Query 11 DPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREA------ 64 DP GRR+ IV+AA RVIA G+ GLSHR VAAEA+VP+GSTTY+F LD L A Sbjct 6 DP-GRRERIVDAALRVIAADGIAGLSHRTVAAEADVPLGSTTYHFGSLDELLVAALRRYN 64 Query 65 -----------ALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN- 112 ALA AS + D LA L RL + A + L Sbjct 65 DNFVRELRGSQALAGPTGASGPTGPTGPAGPDGPAGLAEELTRLLGRWFAGERGAIELEY 124 Query 113 ELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTD 172 ELY+AA RP L+ +A W + + LL R R A A+ DG L L+TG Sbjct 125 ELYLAALRRPVLRPVAAEWTEEAIELLSRRTDRETARALVALMDGVCLQVLLTGGAFDAP 184 Query 173 ELTDAIARLVADG 185 + + R+V G Sbjct 185 RTREMLGRIVDGG 197 >gi|344998942|ref|YP_004801796.1| TetR family transcriptional regulator [Streptomyces sp. SirexAA-E] gi|344314568|gb|AEN09256.1| transcriptional regulator, TetR family [Streptomyces sp. SirexAA-E] Length=183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/179 (40%), Positives = 92/179 (52%), Gaps = 2/179 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RR I+EAA R++A +G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL Sbjct 3 RRYDPE-RRDRIIEAAIRIVADRGIAGLSHRTVAAEADVPLGSTTYHFASLDELLVAALR 61 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQR 126 + + D + DLA L RL + A + L ELY+AA RP L+ Sbjct 62 RCNENFVRTVRESARLADPEADLADELTRLLGEWFAGERGAIELEYELYLAALRRPALRP 121 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADG 185 +A W D LL R A A+ DG +L L+ G + +AR+V G Sbjct 122 VAAEWADEAGELLARRTDPATARALVALLDGISLQVLLAGGDFDAAYTREMLARIVEGG 180 >gi|328881595|emb|CCA54834.1| Transcriptional regulator, TetR family [Streptomyces venezuelae ATCC 10712] Length=182 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/164 (46%), Positives = 95/164 (58%), Gaps = 4/164 (2%) Query 8 RPR--DPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAA 65 RPR DPA RR+ IV+AA RV AR G+ GLSHR VAAEA+VP+GSTTY+F LD L AA Sbjct 3 RPRRHDPA-RRERIVDAALRVAARSGIAGLSHRTVAAEADVPLGSTTYHFASLDELLVAA 61 Query 66 LAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPEL 124 L A LL + + DLAA LARL +L ++ R ELY+AA RP L Sbjct 62 LRKANEGFDRLLRENSALTAPGTDLAAALARLLGEWLGGERARVELEYELYLAALRRPAL 121 Query 125 QRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTP 168 + +A W + ++A L P A A+ DG L +L+T P Sbjct 122 RPVAVEWAETVVAALSPHTDPVTARALVALMDGICLQSLLTDEP 165 >gi|262201944|ref|YP_003273152.1| TetR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085291|gb|ACY21259.1| regulatory protein TetR [Gordonia bronchialis DSM 43247] Length=196 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/167 (38%), Positives = 83/167 (50%), Gaps = 0/167 (0%) Query 19 IVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLA 78 I++AA +I G GL+HR VA A VP+GSTT YF LD LREA L H A+ + Sbjct 22 IIDAAAELIVELGSAGLTHRLVADRAGVPLGSTTQYFTSLDELREAGLHHLADEIDGEVR 81 Query 79 QWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLAL 138 + L + A + YL D R L AA P L LA P ++ L Sbjct 82 DFAGVLRERGASADVFGEMLHAYLCDIRLVRADLALLNAAFVDPALGPLALRLPTAVIYL 141 Query 139 LEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADG 185 L P IG + A AV + DG +H ++ GT + EL+DA+A L G Sbjct 142 LIPHIGEQRARAVAAYVDGVAMHTVLRGTTPTIAELSDALAALTNSG 188 >gi|182439398|ref|YP_001827117.1| TetR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467914|dbj|BAG22434.1| putative TetR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length=198 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/193 (38%), Positives = 90/193 (47%), Gaps = 19/193 (9%) Query 11 DPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL---- 66 DP GRR+ IV+AA RVIA G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL Sbjct 6 DP-GRRERIVDAALRVIAADGIAGLSHRTVAAEADVPLGSTTYHFGSLDELLVAALRRYN 64 Query 67 -------------AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN- 112 A S LA L RL + A + L Sbjct 65 DNFVRELRGSQALAGPGGVSGPTGPAGPDGPAGPAGLAEELTRLLGRWFAGERGAIELEY 124 Query 113 ELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTD 172 ELY+AA RP L+ +A W + + LL R R A A+ DG L L+TG Sbjct 125 ELYLAALRRPVLRPVAAEWTEEAVELLSRRTDRETARALVALMDGVCLQVLLTGGAFDAP 184 Query 173 ELTDAIARLVADG 185 + + R+V G Sbjct 185 RTREMLGRIVDGG 197 >gi|254384161|ref|ZP_04999505.1| ebrA repressor [Streptomyces sp. Mg1] gi|194343050|gb|EDX24016.1| ebrA repressor [Streptomyces sp. Mg1] Length=199 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/169 (39%), Positives = 89/169 (53%), Gaps = 4/169 (2%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA RV+ +G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL A A Sbjct 31 RRQRIIDAAIRVVGAKGIAGLSHRSVAAEADVPLGSTTYHFKTLDELLVAALRQANQAFT 90 Query 75 DLLAQWRSDLDKDRDLAAT-LARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPD 133 L + D+A + L + AD+ R ELY+AA RP L+ +A W + Sbjct 91 VTLPATPAPAG---DVAGSLARLLGRLLAADRGRVELEYELYLAALRRPALRPVAAEWYE 147 Query 134 GLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 + L P A A+ DG L L+T TP + +AR++ Sbjct 148 AVATALAPWTDPVTARALVAVMDGICLQVLLTDTPYDERYAREVLARVL 196 >gi|257057139|ref|YP_003134971.1| hypothetical protein Svir_31710 [Saccharomonospora viridis DSM 43017] gi|256587011|gb|ACU98144.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length=189 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/164 (39%), Positives = 81/164 (50%), Gaps = 4/164 (2%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 R P DP RR I AA VIA +G+ L+HR VAAEA VP+GSTTY+F LD L AL Sbjct 13 RGPNDP-DRRNRIARAAITVIAERGINALTHRMVAAEAGVPLGSTTYHFATLDDLVAVAL 71 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNE--LYMAAAHRPEL 124 AA + D L +W + L +D DL L L + Q R T+ E LY A RP L Sbjct 72 DEAARRNIDALREWNAALPEDVDLVTALTDLVLDSVTKQ-RADTIAEYNLYALALQRPHL 130 Query 125 QRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTP 168 +R A W + L + R + G + ++ TP Sbjct 131 RRAAVAWDNALADVFSTRTDPLTGRMIATLTCGLMMQTVLGETP 174 >gi|269219739|ref|ZP_06163593.1| putative transcriptional regulatory protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210981|gb|EEZ77321.1| putative transcriptional regulatory protein [Actinomyces sp. oral taxon 848 str. F0332] Length=248 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/182 (36%), Positives = 93/182 (52%), Gaps = 7/182 (3%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREA--- 64 R RDP RR+AI+ AA VI +G L+HR VAA A V +GSTT YF+ ++ LRE Sbjct 58 RKRDPEARRRAILNAAIDVIVEKGAAALTHRAVAARAGVSLGSTTKYFSSIEDLRENAMD 117 Query 65 ALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPEL 124 AL +A D + S+L+ D+ + L YL D + R L A A L Sbjct 118 ALVREMDAGVD---AFESELEACDDVESYCIGLAYEYLRDVRQVRADVALLNAGARDDGL 174 Query 125 QRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVAD 184 + +A PD L+A L P G A A+ + +GA +H+ + TP+ E+ + I R + Sbjct 175 REIALRNPDRLIAALAPHFGAERAMALELCLEGAVVHSALRSTPIDK-EVIERIFRGIIS 233 Query 185 GP 186 P Sbjct 234 AP 235 >gi|296137890|ref|YP_003645133.1| TetR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026024|gb|ADG76794.1| transcriptional regulator, TetR family [Tsukamurella paurometabola DSM 20162] Length=192 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/155 (42%), Positives = 85/155 (55%), Gaps = 8/155 (5%) Query 19 IVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLA 78 IV+AA ++ G L+HR+VAA A VP+GSTT YF LD LREAAL + D Sbjct 17 IVDAAAALVLESGADALTHRKVAARAGVPLGSTTQYFATLDDLREAALRNL----MDEAE 72 Query 79 QWRSDLDKD--RDLAATLARLTTV--YLADQDRYRTLNELYMAAAHRPELQRLARLWPDG 134 QW +DL+ + RD A++ A + YL+D R + AAA P+++ LAR W Sbjct 73 QWLADLEAEFVRDGASSAAYTGALHRYLSDPQLVRGDFAMTCAAASSPDMEELARHWTAR 132 Query 135 LLALLEPRIGRRAANAVTVFFDGATLHALITGTPL 169 L+ L I A AV F DGAT+ A+I PL Sbjct 133 LVEALARYIPVENARAVATFSDGATMDAVIAERPL 167 >gi|326383954|ref|ZP_08205638.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395] gi|326197413|gb|EGD54603.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395] Length=183 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/174 (38%), Positives = 83/174 (48%), Gaps = 0/174 (0%) Query 10 RDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHA 69 RDP RR AIVEAA ++ G L+HRRVA A VP+GSTT YF+ +D LR ALA Sbjct 4 RDPEARRAAIVEAAADLVVELGPERLTHRRVAERAGVPLGSTTQYFSSIDDLRTQALARL 63 Query 70 ANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLAR 129 A D L R L L YL + L AAA EL+ LA Sbjct 64 ATEIDDDLDAVRQSLADSGGSVEVLVEQMHDYLTNSRNVSADVSLMSAAAFDAELRTLAL 123 Query 130 LWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVA 183 W L+ +L +G A A+ + DG T+HA + P+S L +A +A Sbjct 124 RWQHNLVDILTGYVGPDNALALAMLADGVTVHAALHDAPVSKQFLHTLVAPFMA 177 >gi|333920137|ref|YP_004493718.1| hypothetical protein AS9A_2471 [Amycolicicoccus subflavus DQS3-9A1] gi|333482358|gb|AEF40918.1| hypothetical protein AS9A_2471 [Amycolicicoccus subflavus DQS3-9A1] Length=193 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/161 (41%), Positives = 84/161 (53%), Gaps = 4/161 (2%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 R P DP RR IVEAA V+ QG+ L+HRRVAA A VP+GSTTY+F LD L AAL Sbjct 10 RGPTDP-DRRDRIVEAAIVVLTEQGVSALTHRRVAAAAEVPLGSTTYHFATLDDLLAAAL 68 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNE--LYMAAAHRPEL 124 AA S L W LD D D+A L+ V + R T+ E LY A HRP L Sbjct 69 TKAAERSVAALRAWEESLDPDADIAHALSEF-VVRSVSETRSDTMAEYNLYALALHRPHL 127 Query 125 QRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALIT 165 + A W + L +L R A + + V G + +++ Sbjct 128 RAAAVAWDNALAEVLSRRTDPVAGHMLGVLLCGLLMQVVLS 168 >gi|295839578|ref|ZP_06826511.1| TetR family transcriptional regulator [Streptomyces sp. SPB74] gi|295827546|gb|EDY43772.2| TetR family transcriptional regulator [Streptomyces sp. SPB74] Length=189 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 71/177 (41%), Positives = 90/177 (51%), Gaps = 2/177 (1%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA RV R G+ GLSHR AAEA+VP+GSTTY+F LD L AAL A A Sbjct 11 RRQRIIDAAIRVTGRSGIAGLSHRTAAAEADVPLGSTTYHFATLDDLLVAALRQANENFA 70 Query 75 DLLAQWRSDLDKDRDLAATLARLTTVYL-ADQDRYRTLNELYMAAAHRPELQRLARLWPD 133 L+ + LAA LA +L AD+ ELY+AA RP L+ +A W Sbjct 71 RLVRDRGALRAPPGGLAAALADAMGAWLAADRANAELEYELYLAALRRPPLRPVAAEWSR 130 Query 134 GLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV-ADGPEQR 189 L L R A AV DG L L+T +P + + R++ DGP R Sbjct 131 ALEEPLTARTDPATARAVVALMDGLCLQVLLTDSPYDEAYAREMLGRVLREDGPPAR 187 >gi|318056391|ref|ZP_07975114.1| hypothetical protein SSA3_00505 [Streptomyces sp. SA3_actG] gi|318075708|ref|ZP_07983040.1| hypothetical protein SSA3_03097 [Streptomyces sp. SA3_actF] Length=181 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/176 (40%), Positives = 90/176 (52%), Gaps = 2/176 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+ R G+ GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 5 RRYDP-DRRQRIIDAAIRVVGRSGIAGLSHRSAAAEADVPLGSTTYHFATLDDLLVAALR 63 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQR 126 A A L+ LAA LA +LA + L ELY+AA +P L+ Sbjct 64 QANENFARLVRDLGVLRAPPAGLAAALAGAMGAWLAADRAHAELEYELYLAAVRKPVLRP 123 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 +A W L L R A AV DG L L+T +P + + + R++ Sbjct 124 VAAEWSRALEEPLAARTDPATARAVVALMDGLCLQVLLTDSPYDEEYAREMLGRVL 179 >gi|311280270|ref|YP_003942501.1| transcriptional regulator, TetR family [Enterobacter cloacae SCF1] gi|308749465|gb|ADO49217.1| transcriptional regulator, TetR family [Enterobacter cloacae SCF1] Length=188 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/183 (29%), Positives = 88/183 (49%), Gaps = 2/183 (1%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RRP DP RR+ I++A IAR G+ ++HR++A A+VP+GS TYYF+ +DAL E A Sbjct 3 RRPNDPL-RRERIIQATLDTIARHGIQAVTHRKIAQCADVPLGSMTYYFSGIDALLEEAF 61 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTT-VYLADQDRYRTLNELYMAAAHRPELQ 125 + + +D+ D + RL + + + ++Y + +P L+ Sbjct 62 TSFTAQMSRQYQAFFTDVLTPDDACDAITRLISGAEVTTARNMELMYQMYAFTSCKPALK 121 Query 126 RLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADG 185 + + W LE A A+ F +G TLH + PL DE+ + R+ + Sbjct 122 GVMQDWMQRSQQTLERWFDAPTARALDAFIEGMTLHFVTDRAPLGRDEIRQMVGRIAGEQ 181 Query 186 PEQ 188 ++ Sbjct 182 KQK 184 >gi|302518364|ref|ZP_07270706.1| ebrA repressor [Streptomyces sp. SPB78] gi|302427259|gb|EFK99074.1| ebrA repressor [Streptomyces sp. SPB78] Length=181 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/176 (40%), Positives = 90/176 (52%), Gaps = 2/176 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+ R G+ GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 5 RRYDP-DRRQRIIDAAIRVVGRAGIAGLSHRSAAAEADVPLGSTTYHFATLDDLLVAALR 63 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQR 126 A A L+ LAA LA +LA + L ELY+AA +P L+ Sbjct 64 QANENFARLVRDLGVLRAPPAGLAAALAGAMGAWLAADRAHAELEYELYLAAVRKPVLRP 123 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 +A W L L R A AV DG L L+T +P + + + R++ Sbjct 124 VAAEWSRALEEPLAARTDPATARAVVALMDGLCLQVLLTDSPYDEEYAREMLGRVL 179 >gi|333027966|ref|ZP_08456030.1| hypothetical protein STTU_5470 [Streptomyces sp. Tu6071] gi|332747818|gb|EGJ78259.1| hypothetical protein STTU_5470 [Streptomyces sp. Tu6071] Length=181 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/176 (39%), Positives = 89/176 (51%), Gaps = 2/176 (1%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RRQ I++AA RV+ R G+ GLSHR AAEA+VP+GSTTY+F LD L AAL Sbjct 5 RRYDP-DRRQRIIDAAIRVVGRSGIAGLSHRSAAAEADVPLGSTTYHFATLDDLLVAALR 63 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLN-ELYMAAAHRPELQR 126 A L+ LAA LA +LA + L ELY+AA +P L+ Sbjct 64 QVNENFARLVRDLGVLRAPPAGLAAALAGAMGAWLAADRAHAELEYELYLAAVRKPVLRP 123 Query 127 LARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 +A W L L R A AV DG L L+T +P + + + R++ Sbjct 124 VAAEWSRALEEPLAARTDPATARAVVALMDGLCLQVLLTDSPYDEEYAREMLGRVL 179 >gi|260597241|ref|YP_003209812.1| HTH-type transcriptional regulator YbjK [Cronobacter turicensis z3032] gi|260216418|emb|CBA29506.1| Uncharacterized HTH-type transcriptional regulator ybjK [Cronobacter turicensis z3032] Length=181 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/184 (32%), Positives = 93/184 (51%), Gaps = 12/184 (6%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RR+ I+EA IA G ++HR++A EA VP+GS TYYF L+AL A Sbjct 4 RQNDPQ-RRERILEATLACIAAHGFHHITHRKIALEAGVPLGSVTYYFTTLEALLAEAFT 62 Query 68 HAANASAD----LLAQWRSDLDKDRDLAATL--ARLTTVYLADQDRYRTLNELYMAAAHR 121 A + + L+AQ +S + L A + A++TT + + +LY A+ + Sbjct 63 RFAESMSCQYQALMAQAQSREEACEALTALICGAQVTT-----PENMELMYQLYAYASRQ 117 Query 122 PELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 P+L+ + + W LE A A+ F +G TLH ++ PL+ + + + R+ Sbjct 118 PQLKIIMQDWMRRSQQTLETWFDPATARALDAFVEGMTLHYVVDREPLNRETIRSMVGRI 177 Query 182 VADG 185 V +G Sbjct 178 VGEG 181 >gi|157146502|ref|YP_001453820.1| hypothetical protein CKO_02263 [Citrobacter koseri ATCC BAA-895] gi|157083707|gb|ABV13385.1| hypothetical protein CKO_02263 [Citrobacter koseri ATCC BAA-895] Length=185 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/176 (29%), Positives = 85/176 (49%), Gaps = 2/176 (1%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RR DP RR IV+A + I G+ G++HR++AA A VP+GS TYYF+ +D L AL Sbjct 7 RRANDPL-RRDKIVQATQEAIITHGIHGVTHRKIAAIAQVPLGSMTYYFSGIDELLIEAL 65 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQ-DRYRTLNELYMAAAHRPELQ 125 + + + +D+ +D + + L D + +LY A+ +P L+ Sbjct 66 SRFTETMSHQFQLFFADVTNVQDACHAITDMIYSSLVTTPDNMELMYQLYAFASRKPALK 125 Query 126 RLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 + + W LE A A+ F +G TLH + PL+ +++ + R+ Sbjct 126 TVMQNWMQRSQQTLEQWFEPVTARALDAFIEGMTLHFVTDRAPLTREDILVMVKRI 181 >gi|271969071|ref|YP_003343267.1| TetR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512246|gb|ACZ90524.1| transcriptional regulator, TetR family [Streptosporangium roseum DSM 43021] Length=240 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/186 (35%), Positives = 89/186 (48%), Gaps = 12/186 (6%) Query 7 RRPR--DPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREA 64 RRPR DP RR I++ VIA GL G HR VA A+VP+GS TY+F LD L E Sbjct 59 RRPRRHDP-NRRDRIIDVTIDVIAEHGLAGTGHRSVAEAADVPLGSMTYHFASLDELVEL 117 Query 65 ALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYR----TLNELYMAAAH 120 A + + AD + + DLAA +T V + D R R ELY+ AA Sbjct 118 AFSRYVSVLADRFDARLAAAPESGDLAAI---VTDVIMVDFLRARRDLVLAYELYLGAAR 174 Query 121 RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR 180 P L+ + R W LE A + +G LH + P++ +E+ A+AR Sbjct 175 NPALREVTRTWMRRSRRALERLTDPATARVLDALLEGLVLHNFLATDPMTREEVHQAVAR 234 Query 181 LVADGP 186 ++ GP Sbjct 235 VI--GP 238 >gi|146310995|ref|YP_001176069.1| TetR family transcriptional regulator [Enterobacter sp. 638] gi|145317871|gb|ABP60018.1| transcriptional regulator, TetR family [Enterobacter sp. 638] Length=182 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/183 (28%), Positives = 86/183 (47%), Gaps = 8/183 (4%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RRP DP RR+ I++A IA G+ ++HR++A A VP+GS TYYF +D+L E A Sbjct 3 RRPNDPL-RRERILQATLETIAEHGIDAVTHRKIATCAGVPLGSMTYYFEGMDSLLEEAF 61 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQ----DRYRTLNELYMAAAHRP 122 + D+ Q+ +TT+ + + + +LY + +P Sbjct 62 ---TRFTCDMSQQYCDFFAGVTGPEMACESITTLIHSSEVTTPHNMELMYQLYALMSRKP 118 Query 123 ELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 L+++ + W + LE A A+ F +G TLH + PLS D++ + R+ Sbjct 119 ALKKVMQDWMQTSQSTLEQWFDPVTARALDAFIEGMTLHFVTDRQPLSRDDIRRMVGRIA 178 Query 183 ADG 185 + Sbjct 179 GEN 181 >gi|239986856|ref|ZP_04707520.1| TetR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291443808|ref|ZP_06583198.1| ebrA repressor [Streptomyces roseosporus NRRL 15998] gi|291346755|gb|EFE73659.1| ebrA repressor [Streptomyces roseosporus NRRL 15998] Length=200 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/197 (38%), Positives = 93/197 (48%), Gaps = 20/197 (10%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RR I++AA VIA G+ GLSHR VAAEA+VP+GSTTY+F LD L AAL Sbjct 3 RRYDPE-RRTRIIDAALTVIAADGMAGLSHRTVAAEADVPLGSTTYHFASLDELLVAALR 61 Query 68 HA------ANASADLLAQWRSDLD------------KDRDLAATLARLTTVYLADQDRYR 109 A S+ L A+ + + LA L RL + A + Sbjct 62 RCNENFVQALRSSGLFAEEAEEGGAGRGEGDAGQGAEGAGLAEELTRLLDRWFAGERGAI 121 Query 110 TLN-ELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTP 168 L ELY+AA RP L+ +A W +ALL R A A+ DG L L+TG Sbjct 122 ELEYELYLAALRRPALRPVAAEWTTEAVALLSRRTDPETARALVALMDGVCLQVLLTGGT 181 Query 169 LSTDELTDAIARLVADG 185 + R+VA G Sbjct 182 FDAAYTRVMLERIVAGG 198 >gi|134103635|ref|YP_001109296.1| putative DeoR-type transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004829|ref|ZP_06562802.1| putative DeoR-type transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916258|emb|CAM06371.1| putative DeoR-type transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=201 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/179 (34%), Positives = 90/179 (51%), Gaps = 7/179 (3%) Query 19 IVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLA 78 IV+A RV+AR G+ G+SHR +A EA VP S YYF+ +D L A L + + Sbjct 22 IVDATLRVVARDGIAGVSHRNIAREAGVPAASVGYYFDSIDDLLVATLLDSVEVLIAEID 81 Query 79 QWRSDLDKDRDLAATLARLTTVYLADQDRYRTL--NELYMAAAHRPELQRLARLWPDGLL 136 + S++ D +AR+ + D+ R RTL ELY+ AA RP L+ AR W + Sbjct 82 RMTSEVGSDEQWPGVVARMLA-RMIDEHRERTLAEYELYLLAARRPALRPAARRWIEVAT 140 Query 137 ALLEPRIGRRAANAVTVFF---DGATLHALITGTPLSTDELTDAIARLVADGPEQREVG 192 + G +A+ FF DG L AL+ P + +EL ++ ++ G R +G Sbjct 141 GYVNGGEGGD-PHAMRAFFAAIDGLVLQALVADEPPTAEELEASLRYVMQPGSYLRSLG 198 >gi|170768984|ref|ZP_02903437.1| transcriptional regulator, TetR family [Escherichia albertii TW07627] gi|170122056|gb|EDS90987.1| transcriptional regulator, TetR family [Escherichia albertii TW07627] Length=191 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/179 (28%), Positives = 86/179 (49%), Gaps = 8/179 (4%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RR DP RR+ I+ A + G+ ++HR++A A VP+GS TYYF+ +D L A Sbjct 2 RRANDPQ-RREKIIRATLEAVKLYGIHAVTHRKIAVLAQVPLGSMTYYFSGIDELLLEAF 60 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQ----DRYRTLNELYMAAAHRP 122 + + Q+++ D D ++ +T + + Q + + +LY A+ +P Sbjct 61 SRFTQTMS---LQYQTFFDDVSDASSACQAITEMIYSSQVATPNNMELMYQLYALASRKP 117 Query 123 ELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 +L+ + + W LE A A+ F +G TLH + PLS +E+ + R+ Sbjct 118 QLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTDCKPLSREEILKMVERV 176 >gi|297560633|ref|YP_003679607.1| TetR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845081|gb|ADH67101.1| transcriptional regulator, TetR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=184 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/172 (35%), Positives = 83/172 (49%), Gaps = 7/172 (4%) Query 5 SDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREA 64 SD R RRQA++EA RVI R G+ G+SHR V+ EA VP +TTYYF L L A Sbjct 4 SDGRRLKGEQRRQALIEATLRVIERDGVAGVSHRTVSQEAGVPTSATTYYFTGLGDLLTA 63 Query 65 ALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPEL 124 AL + ++ + + S D+ RDLA L+++ + D R EL++ AA +P L Sbjct 64 ALTGVMDEDSERMRRMSSGGDRRRDLAELLSKVAS----DPGRLLAEYELFLLAARQPHL 119 Query 125 QRLARLWPDGLLALLEPRIGR--RAANAVTVFFDGATLHALITGTPLSTDEL 174 + W + A R N V DG LH L++ DE Sbjct 120 REATDRWLAAVSAFARCYTDDPVRVRNVAAV-IDGILLHTLLSDHKPDADEF 170 >gi|257057801|ref|YP_003135633.1| hypothetical protein Svir_38620 [Saccharomonospora viridis DSM 43017] gi|256587673|gb|ACU98806.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length=186 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/168 (39%), Positives = 85/168 (51%), Gaps = 15/168 (8%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I+EA RVI R G+ G++HR VA EA VP STTY+F+ LD L A L A Sbjct 15 RRQEIIEATLRVIERDGVAGVTHRTVAKEAGVPTTSTTYHFSSLDDLLIATLISCAR--- 71 Query 75 DLLAQWRSDLDKDRDLAATLARLTTVYLAD---QDRYRTL--NELYMAAAHRPELQRLAR 129 D+ + +D+ R + A LA+ R RT+ ELY+ AA RPEL+ AR Sbjct 72 DMATEVYWMIDRARSRGSRGADEVANLLAEAIGPRRGRTMAEYELYLLAARRPELRPAAR 131 Query 130 LWPDGLLALLEPRIGRRAANAVTVFF---DGATLHALITGTPLSTDEL 174 W D L ++ + A VF DG + LI P + +EL Sbjct 132 RWLDVLTSM----VRHDDEVAFRVFLAGIDGLLIQGLIDDEPPTAEEL 175 >gi|302531180|ref|ZP_07283522.1| predicted protein [Streptomyces sp. AA4] gi|302440075|gb|EFL11891.1| predicted protein [Streptomyces sp. AA4] Length=186 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/168 (39%), Positives = 85/168 (51%), Gaps = 15/168 (8%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RR I+EA RVI R G+ G++HR VAAEA VP STTY+F+ LD L A L A Sbjct 15 RRTEIIEATLRVIERDGVAGVTHRTVAAEAGVPTTSTTYHFSSLDDLLVATLISCAR--- 71 Query 75 DLLAQWRSDLDKDRDLAATLARLTTVYLADQ---DRYRTL--NELYMAAAHRPELQRLAR 129 D+ + +D+ R + A LA+ R RT+ ELY+ AA +PEL+ AR Sbjct 72 DMATEVYWMIDRARSRGSRGAEEVAGLLAEALGPRRGRTMAEYELYLLAARKPELRPAAR 131 Query 130 LWPDGLLALLEPRIGRRAANAVTVFF---DGATLHALITGTPLSTDEL 174 W D L ++ + A VF DG + LI P S +EL Sbjct 132 RWLDVLTSM----VRHDDEVAFRVFLAGIDGLLIQGLIDDEPPSAEEL 175 >gi|283784609|ref|YP_003364474.1| TetR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282948063|emb|CBG87628.1| TetR-family transcriptional regulator [Citrobacter rodentium ICC168] Length=193 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/189 (30%), Positives = 92/189 (49%), Gaps = 12/189 (6%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RR DP RR+ I+ A + G+ ++HR++AA A+VP+GS TYYF+ +D L L Sbjct 2 RRANDPQ-RREKIITATLEAVKEHGIHAVTHRKIAAIADVPLGSLTYYFSGIDEL----L 56 Query 67 AHAANASADLL-AQWRSDLDKDRDLAATLARLTTVYLADQ----DRYRTLNELYMAAAHR 121 + A N D++ AQ+++ D + + + Q + + +LY A+ + Sbjct 57 SEAFNCFTDVMSAQYQAFFSGVTDAQGACQAIAEMIDSSQVTTPENMALMYQLYAFASRK 116 Query 122 PELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 P L+ + + W LE A A+ F +G TLH + PLS +E+ + R+ Sbjct 117 PALKTVMQNWMQRSQQTLEQWFDPGTARALDAFIEGMTLHFVTDRAPLSREEILLMVRRV 176 Query 182 VADGPEQRE 190 G E RE Sbjct 177 A--GEEVRE 183 >gi|336249446|ref|YP_004593156.1| putative DeoR-type transcriptional regulator [Enterobacter aerogenes KCTC 2190] gi|334735502|gb|AEG97877.1| putative DeoR-type transcriptional regulator [Enterobacter aerogenes KCTC 2190] Length=184 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/182 (29%), Positives = 87/182 (48%), Gaps = 8/182 (4%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RRP DP RR+ I++A IA G+ ++HR++A+ A VP+GS TYYF+ ++AL E A Sbjct 3 RRPNDPQ-RRERILQATLDTIAAHGIHAVTHRKIASCAGVPLGSLTYYFSGIEALIEEAF 61 Query 67 AHAANASADLLAQWRSDLD----KDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRP 122 N + ++ AQ++ D + + A + + + + +LY + RP Sbjct 62 ---RNFTVEMSAQYQQFFDGVGSRQQACDAIAELIFSAQVTTARNMELMYQLYAFCSSRP 118 Query 123 ELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 L+ + + W LE A + F +G TLH + PLS + + RL Sbjct 119 ALKTVMQSWMLRSQQTLEQWFEPATARGLDAFIEGMTLHFVTDSAPLSKAAIRLMVGRLA 178 Query 183 AD 184 + Sbjct 179 GE 180 >gi|324112718|gb|EGC06694.1| tetR family protein regulatory protein [Escherichia fergusonii B253] Length=179 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/176 (26%), Positives = 83/176 (48%), Gaps = 2/176 (1%) Query 7 RRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAAL 66 RR DP RR+ I+ A IA G+ ++HR++A A VP+GS TYYF+ +D L A Sbjct 2 RRSNDPQ-RREKIIAATLEAIATHGIHAVTHRKIAIIAQVPLGSLTYYFSGIDELLTIAF 60 Query 67 AHAANASADLLAQWRSDLDKDRDLAATLARLT-TVYLADQDRYRTLNELYMAAAHRPELQ 125 + + + + + + + + + + ++ + +LY A+ +P L+ Sbjct 61 RRFTEIMTEQYQSFFTGVSEPIEACEAITEMIHSAQITTPEKMALMYQLYAFASRKPALK 120 Query 126 RLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 ++ + W L+ A A+ F +G TLH + PL+ DE+ + R+ Sbjct 121 KVMQNWMHSSQQTLQQWFDPDTARALDAFIEGMTLHFVTDSKPLTRDEILKMVKRI 176 >gi|134101872|ref|YP_001107533.1| TetR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008598|ref|ZP_06566571.1| TetR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914495|emb|CAM04608.1| TetR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=295 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/184 (39%), Positives = 96/184 (53%), Gaps = 6/184 (3%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 RP+DPA RR+ I AA V+A +G+ L+HR VAA A VP+GSTTYYF +LD L AL Sbjct 115 RPKDPA-RRERIARAAISVVAERGIEKLTHRAVAAAAGVPLGSTTYYFANLDDLLAEALR 173 Query 68 HAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTL--NELYMAAAHRPELQ 125 AA L +W LD D AA LA L YL + R RT+ +ELY+AA HRP L Sbjct 174 QAAGDDVAQLREWARGLDPSADFAAALADLVLHYLGPE-RSRTVVEHELYVAALHRPALA 232 Query 126 RLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLVADG 185 ++ W L ++ F G L ++ + + DE+ R++ G Sbjct 233 HVSTEWDAALAEEFTAHTDPVTGKVLSALFCGLLLQGVVRESVPTRDEIETLFRRVL--G 290 Query 186 PEQR 189 P ++ Sbjct 291 PAEK 294 >gi|333955922|gb|EGL73629.1| hypothetical protein CSE899_05067 [Cronobacter sakazakii E899] Length=181 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/180 (33%), Positives = 89/180 (50%), Gaps = 12/180 (6%) Query 8 RPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 R DP RR+ I+EA IA G ++HR++A EA VP+GS TYYF L+AL A Sbjct 4 RQNDP-QRRERILEATLACIATHGFHHITHRKIALEAGVPLGSVTYYFTSLEALLAEAFT 62 Query 68 HAANASAD----LLAQWRSDLDKDRDLAATL--ARLTTVYLADQDRYRTLNELYMAAAHR 121 A + + L+AQ +S + L A + A++TT + + +LY A+ + Sbjct 63 RFAESMSRQYQALMAQAQSREEACEALTALICGAQVTT-----PENMELMYQLYAYASRQ 117 Query 122 PELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARL 181 P+L+ + + W LE A A+ F +G TLH ++ PL E+ + RL Sbjct 118 PQLKIIMQDWMRRSQQTLETWFDPATARALDAFVEGMTLHYVVDREPLKEAEIRVIVLRL 177 >gi|345014301|ref|YP_004816655.1| TetR family transcriptional regulator [Streptomyces violaceusniger Tu 4113] gi|344040650|gb|AEM86375.1| transcriptional regulator, TetR family [Streptomyces violaceusniger Tu 4113] Length=189 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/173 (38%), Positives = 88/173 (51%), Gaps = 8/173 (4%) Query 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASA 74 RRQ I++AA V+ G+GGL HR VAA A+VP+GSTTY+F LD L AAL +A Sbjct 9 RRQRIIDAAAAVVRESGIGGLGHRAVAAAADVPLGSTTYHFATLDDLLIAALRQ---INA 65 Query 75 DLLAQ---WRSDLDKDRDLAATLAR-LTTVYLADQDRYRTLNELYMAAAHRPELQRLARL 130 + LA+ W +D A LAR L + D+ R ELY AA L+ LA Sbjct 66 EWLAEVRHWVEGVDPAAPPADELARWLGEQFTGDRARMELEYELYFAALRHEGLRPLAAE 125 Query 131 WPDGLLALLEPRI-GRRAANAVTVFFDGATLHALITGTPLSTDELTDAIARLV 182 D + +L + A AV DG TL L+ P + + A+AR++ Sbjct 126 CLDEMARMLTRLVPDATTARAVVALIDGLTLQVLLADRPYDREGTSAALARIM 178 Lambda K H 0.319 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 220408776486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40