BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3073c Length=118 Score E Sequences producing significant alignments: (Bits) Value gi|15610210|ref|NP_217589.1| hypothetical protein Rv3073c [Mycob... 241 4e-62 gi|289553136|ref|ZP_06442346.1| conserved hypothetical protein [... 237 5e-61 gi|118618755|ref|YP_907087.1| hypothetical protein MUL_3449 [Myc... 181 3e-44 gi|342860970|ref|ZP_08717619.1| hypothetical protein MCOL_18902 ... 171 3e-41 gi|254776395|ref|ZP_05217911.1| hypothetical protein MaviaA2_172... 163 1e-38 gi|240170661|ref|ZP_04749320.1| hypothetical protein MkanA1_1520... 162 2e-38 gi|296169252|ref|ZP_06850903.1| protein of hypothetical function... 162 2e-38 gi|41409248|ref|NP_962084.1| hypothetical protein MAP3150c [Myco... 161 3e-38 gi|118464803|ref|YP_883135.1| hypothetical protein MAV_3979 [Myc... 158 2e-37 gi|336459197|gb|EGO38142.1| hypothetical protein MAPs_04980 [Myc... 157 6e-37 gi|254820721|ref|ZP_05225722.1| hypothetical protein MintA_12381... 155 2e-36 gi|333991455|ref|YP_004524069.1| hypothetical protein JDM601_281... 141 3e-32 gi|118469417|ref|YP_886485.1| hypothetical protein MSMEG_2127 [M... 125 2e-27 gi|258653798|ref|YP_003202954.1| hypothetical protein Namu_3653 ... 122 1e-26 gi|21225882|ref|NP_631661.1| hypothetical protein SCO7620 [Strep... 117 5e-25 gi|298291301|ref|YP_003693240.1| hypothetical protein Snov_1311 ... 115 2e-24 gi|257056175|ref|YP_003134007.1| hypothetical protein Svir_21720... 114 4e-24 gi|329937385|ref|ZP_08286943.1| hypothetical protein SGM_2435 [S... 114 5e-24 gi|294634153|ref|ZP_06712706.1| uroporphyrin-III c-methyltransfe... 114 6e-24 gi|119714171|ref|YP_919313.1| hypothetical protein Noca_4868 [No... 113 9e-24 gi|255513915|gb|EET90180.1| protein of unknown function DUF488 [... 113 1e-23 gi|318060569|ref|ZP_07979292.1| hypothetical protein SSA3_21683 ... 112 2e-23 gi|266631111|emb|CBH32111.1| hypothetical protein [Streptomyces ... 111 4e-23 gi|297155885|gb|ADI05597.1| hypothetical protein SBI_02476 [Stre... 110 5e-23 gi|296271324|ref|YP_003653956.1| hypothetical protein Tbis_3373 ... 110 8e-23 gi|334365029|ref|ZP_08513997.1| conserved hypothetical protein [... 109 1e-22 gi|262204109|ref|YP_003275317.1| hypothetical protein Gbro_4278 ... 109 1e-22 gi|336320306|ref|YP_004600274.1| hypothetical protein Celgi_1187... 109 2e-22 gi|312197339|ref|YP_004017400.1| hypothetical protein FraEuI1c_3... 108 2e-22 gi|289208916|ref|YP_003460982.1| hypothetical protein TK90_1755 ... 108 2e-22 gi|54025115|ref|YP_119357.1| hypothetical protein nfa31460 [Noca... 108 3e-22 gi|260906975|ref|ZP_05915297.1| hypothetical protein BlinB_16702... 105 2e-21 gi|302518037|ref|ZP_07270379.1| conserved hypothetical protein [... 105 3e-21 gi|300786417|ref|YP_003766708.1| hypothetical protein AMED_4536 ... 105 3e-21 gi|319784778|ref|YP_004144254.1| hypothetical protein Mesci_5104... 105 3e-21 gi|302528367|ref|ZP_07280709.1| conserved hypothetical protein [... 104 4e-21 gi|291515027|emb|CBK64237.1| Uncharacterized conserved protein [... 104 4e-21 gi|340357394|ref|ZP_08680011.1| MarR family transcriptional regu... 104 5e-21 gi|302541237|ref|ZP_07293579.1| putative uroporphyrin-III c-meth... 104 5e-21 gi|291450504|ref|ZP_06589894.1| conserved hypothetical protein [... 103 1e-20 gi|256831489|ref|YP_003160216.1| hypothetical protein Jden_0239 ... 102 2e-20 gi|304312379|ref|YP_003811977.1| hypothetical protein HDN1F_2751... 102 2e-20 gi|148262413|ref|YP_001229119.1| hypothetical protein Gura_0330 ... 102 3e-20 gi|159186149|ref|NP_356259.2| hypothetical protein Atu4395 [Agro... 101 3e-20 gi|39998531|ref|NP_954482.1| hypothetical protein GSU3442 [Geoba... 101 4e-20 gi|184199725|ref|YP_001853932.1| hypothetical protein KRH_00790 ... 101 4e-20 gi|119718863|ref|YP_925828.1| hypothetical protein Noca_4646 [No... 101 4e-20 gi|325123337|gb|ADY82860.1| putative uroporphyrin-III C-methyltr... 101 4e-20 gi|258645758|ref|ZP_05733227.1| transcriptional regulator, MarR ... 101 4e-20 gi|298292289|ref|YP_003694228.1| hypothetical protein Snov_2314 ... 100 5e-20 >gi|15610210|ref|NP_217589.1| hypothetical protein Rv3073c [Mycobacterium tuberculosis H37Rv] gi|15842643|ref|NP_337680.1| hypothetical protein MT3158 [Mycobacterium tuberculosis CDC1551] gi|31794252|ref|NP_856745.1| hypothetical protein Mb3100c [Mycobacterium bovis AF2122/97] 78 more sequence titles Length=118 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH Sbjct 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 Query 61 QPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 QPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR Sbjct 61 QPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 >gi|289553136|ref|ZP_06442346.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289437768|gb|EFD20261.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] Length=117 Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 116/117 (99%), Positives = 117/117 (100%), Gaps = 0/117 (0%) Query 2 VRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQ 61 +RETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQ Sbjct 1 MRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQ 60 Query 62 PERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 PERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR Sbjct 61 PERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 117 >gi|118618755|ref|YP_907087.1| hypothetical protein MUL_3449 [Mycobacterium ulcerans Agy99] gi|183981601|ref|YP_001849892.1| hypothetical protein MMAR_1585 [Mycobacterium marinum M] gi|118570865|gb|ABL05616.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183174927|gb|ACC40037.1| conserved hypothetical protein [Mycobacterium marinum M] Length=118 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/118 (75%), Positives = 96/118 (82%), Gaps = 0/118 (0%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M RE R+RVAR+Y+D++PDDGQRVLVDRIWP GIRKDD RVGIWCK VAPS ELR+WYHH Sbjct 1 MSREARIRVARIYDDVEPDDGQRVLVDRIWPRGIRKDDPRVGIWCKGVAPSTELRQWYHH 60 Query 61 QPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 QPERFDEFA+RY+ EL SAALAEL L VVT VTATR VA SH AVLA LL R Sbjct 61 QPERFDEFAARYEAELSGSAALAELHTLAQGGVVTLVTATREVAGSHVAVLANLLKAR 118 >gi|342860970|ref|ZP_08717619.1| hypothetical protein MCOL_18902 [Mycobacterium colombiense CECT 3035] gi|342131414|gb|EGT84684.1| hypothetical protein MCOL_18902 [Mycobacterium colombiense CECT 3035] Length=118 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/118 (71%), Positives = 94/118 (80%), Gaps = 0/118 (0%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M + R+RVARVY+D+ PD+GQRVLVDR+WP G+RKDD RVGIWCK+VAPSK+LREWY H Sbjct 1 MSAKGRIRVARVYDDVGPDEGQRVLVDRVWPRGVRKDDPRVGIWCKNVAPSKDLREWYQH 60 Query 61 QPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 PERFDEFASRY+ EL DS AL ELRKL R VT VTATR + S AAVLA LL R Sbjct 61 DPERFDEFASRYKSELRDSGALDELRKLAKRGPVTLVTATRDLDISQAAVLATLLKSR 118 >gi|254776395|ref|ZP_05217911.1| hypothetical protein MaviaA2_17247 [Mycobacterium avium subsp. avium ATCC 25291] Length=118 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/111 (71%), Positives = 90/111 (82%), Gaps = 0/111 (0%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 R++VARVY+ + PD+GQRVLVDRIWP G+RKDD RVGIWCKDVAPSK+LREWYHH+PERF Sbjct 6 RIQVARVYDKVGPDEGQRVLVDRIWPRGVRKDDPRVGIWCKDVAPSKQLREWYHHEPERF 65 Query 66 DEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 DEF SRY+ EL + AL ELR L R VT VTATR + S AAVLA+LL Sbjct 66 DEFTSRYKSELRGNPALDELRALAKRGSVTLVTATRDLDISQAAVLAELLK 116 >gi|240170661|ref|ZP_04749320.1| hypothetical protein MkanA1_15205 [Mycobacterium kansasii ATCC 12478] Length=118 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/116 (69%), Positives = 91/116 (79%), Gaps = 0/116 (0%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 MV + R+RV R+YE+ PDDGQR+LVD IWP GIRKDD RVGIW KDVAPSKELREWYHH Sbjct 1 MVTKRRIRVTRIYEEPGPDDGQRILVDGIWPRGIRKDDPRVGIWRKDVAPSKELREWYHH 60 Query 61 QPERFDEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 + ERFDEF +RY+ EL S ALAELRKL +T VTATR + SHAAVLA+LL Sbjct 61 RRERFDEFEARYEAELSGSPALAELRKLAASGPITLVTATREIDGSHAAVLAKLLK 116 >gi|296169252|ref|ZP_06850903.1| protein of hypothetical function DUF488 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896076|gb|EFG75744.1| protein of hypothetical function DUF488 [Mycobacterium parascrofulaceum ATCC BAA-614] Length=132 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/113 (72%), Positives = 91/113 (81%), Gaps = 0/113 (0%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 R+RVARVY+D+ PDDGQRVLVDR+WP GIRKDD RVGIW KDVAPSK+LREWY H+PE F Sbjct 20 RIRVARVYDDVTPDDGQRVLVDRVWPRGIRKDDPRVGIWRKDVAPSKDLREWYQHRPELF 79 Query 66 DEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 DEFA+RYQ EL S AL E+ +L R VVT VTATR V S AAVLA+LL R Sbjct 80 DEFAARYQAELRGSPALEEVCQLAKRGVVTLVTATRAVDISQAAVLAKLLKTR 132 >gi|41409248|ref|NP_962084.1| hypothetical protein MAP3150c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398068|gb|AAS05698.1| hypothetical protein MAP_3150c [Mycobacterium avium subsp. paratuberculosis K-10] Length=118 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/111 (70%), Positives = 89/111 (81%), Gaps = 0/111 (0%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 R++VARVY+ + PD+GQRVLVDRIWP G+RKDD RVGIWCKDVAPSK+LREWYHH+PERF Sbjct 6 RIQVARVYDKVGPDEGQRVLVDRIWPRGVRKDDPRVGIWCKDVAPSKQLREWYHHEPERF 65 Query 66 DEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 DEF SRY+ EL + AL ELR L R VT VTATR + S A VLA+LL Sbjct 66 DEFTSRYKSELRGNPALDELRTLAKRGSVTLVTATRDLDISQAVVLAELLK 116 >gi|118464803|ref|YP_883135.1| hypothetical protein MAV_3979 [Mycobacterium avium 104] gi|118166090|gb|ABK66987.1| conserved hypothetical protein [Mycobacterium avium 104] Length=110 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/108 (71%), Positives = 87/108 (81%), Gaps = 0/108 (0%) Query 9 VARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEF 68 +ARVY+ + PD+GQRVLVDRIWP G+RKDD RVGIWCKDVAPSK+LREWYHH+PERFDEF Sbjct 1 MARVYDKVGPDEGQRVLVDRIWPRGVRKDDPRVGIWCKDVAPSKQLREWYHHEPERFDEF 60 Query 69 ASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 SRY+ EL + AL ELR L R VT VTATR + S AAVLA+LL Sbjct 61 TSRYKSELRGNPALDELRALAKRGSVTLVTATRDLDISQAAVLAELLK 108 >gi|336459197|gb|EGO38142.1| hypothetical protein MAPs_04980 [Mycobacterium avium subsp. paratuberculosis S397] Length=110 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/108 (70%), Positives = 86/108 (80%), Gaps = 0/108 (0%) Query 9 VARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEF 68 +ARVY+ + PD+GQRVLVDRIWP G+RKDD RVGIWCKDVAPSK+LREWYHH+PERFDEF Sbjct 1 MARVYDKVGPDEGQRVLVDRIWPRGVRKDDPRVGIWCKDVAPSKQLREWYHHEPERFDEF 60 Query 69 ASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 SRY+ EL + AL ELR L R VT VTATR + S A VLA+LL Sbjct 61 TSRYKSELRGNPALDELRTLAKRGSVTLVTATRDLDISQAVVLAELLK 108 >gi|254820721|ref|ZP_05225722.1| hypothetical protein MintA_12381 [Mycobacterium intracellulare ATCC 13950] Length=109 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 75/107 (71%), Positives = 86/107 (81%), Gaps = 0/107 (0%) Query 11 RVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFAS 70 RVY+D+ D+GQRVLVDR+WP G+RKDD RVGIWCK+VAPSK+LREWY H+ ERFDEF S Sbjct 2 RVYDDVSADEGQRVLVDRVWPRGMRKDDPRVGIWCKEVAPSKDLREWYQHRAERFDEFTS 61 Query 71 RYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 RY+ EL DSAALAELRKL R VT VTATR V S A VLA++L Sbjct 62 RYEAELRDSAALAELRKLAKRGPVTLVTATREVDISQAVVLAKVLGA 108 >gi|333991455|ref|YP_004524069.1| hypothetical protein JDM601_2815 [Mycobacterium sp. JDM601] gi|333487423|gb|AEF36815.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=122 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 74/122 (61%), Positives = 90/122 (74%), Gaps = 4/122 (3%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M +T +RVARVY++ +DGQR+LVDR+WP G RK+D RVG W KD APS+ELR WY H Sbjct 1 MAAKTTIRVARVYDEPRAEDGQRILVDRVWPRGFRKNDPRVGRWFKDAAPSRELRSWYDH 60 Query 61 QPERFDEFASRYQEEL---HDSAALAELRKLT-GRSVVTPVTATRHVARSHAAVLAQLLN 116 +PERFDEF +RY++EL +AAL ELR+LT G VT VTATR V S AAVLA+LL Sbjct 61 RPERFDEFVARYKDELASPQGAAALEELRELTRGAKTVTLVTATRDVDGSQAAVLAELLA 120 Query 117 GR 118 R Sbjct 121 SR 122 >gi|118469417|ref|YP_886485.1| hypothetical protein MSMEG_2127 [Mycobacterium smegmatis str. MC2 155] gi|118170704|gb|ABK71600.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=119 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/118 (55%), Positives = 79/118 (67%), Gaps = 3/118 (2%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M + VR+ARVYE+ +P +G RVLVDR+WP G+RKDD R+G W +VAPS ELR WY H Sbjct 1 MASKHEVRLARVYEEPEPGEGHRVLVDRLWPRGLRKDDPRIGQWLPEVAPSTELRRWYGH 60 Query 61 QPERFDEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 PER+DEF RY EL +AAL ELR + V VTAT+ + SH +VLA LL Sbjct 61 APERYDEFVERYTAELETPAAAAALDELRGIVRAGPVVLVTATKEIELSHLSVLAGLL 118 >gi|258653798|ref|YP_003202954.1| hypothetical protein Namu_3653 [Nakamurella multipartita DSM 44233] gi|258557023|gb|ACV79965.1| protein of unknown function DUF488 [Nakamurella multipartita DSM 44233] Length=125 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/120 (52%), Positives = 80/120 (67%), Gaps = 3/120 (2%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M+ + V+V R+Y++ DDG RVLVDR+WP G+ K R+ WC+ VAPS ELR WYHH Sbjct 1 MIDQHAVQVRRIYDEPRTDDGTRVLVDRLWPRGMSKARARLNEWCRTVAPSTELRTWYHH 60 Query 61 QPERFDEFASRYQEEL---HDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 +PERF+EF RY +EL +AALA LR L + +T +TAT+ A S AAVLA LL Sbjct 61 EPERFEEFTRRYLDELATPEQAAALAHLRDLANHNSLTLLTATKSTALSEAAVLATLLTS 120 >gi|21225882|ref|NP_631661.1| hypothetical protein SCO7620 [Streptomyces coelicolor A3(2)] gi|289766960|ref|ZP_06526338.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|11322409|emb|CAC16722.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289697159|gb|EFD64588.1| conserved hypothetical protein [Streptomyces lividans TK24] Length=119 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/116 (53%), Positives = 75/116 (65%), Gaps = 3/116 (2%) Query 5 TRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPER 64 RV R+YE P DG+RVLVDR+WP G+ K+ + W +DVAPS +LR WYHH P R Sbjct 3 ARVGYRRIYESATPQDGKRVLVDRLWPRGVSKEKAGLDAWLRDVAPSADLRRWYHHDPRR 62 Query 65 FDEFASRYQEELHDS---AALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 +DEF RY EL DS AAL LR L R+ VT +TAT+ V S AA LA+ L+G Sbjct 63 YDEFRRRYFAELEDSDHEAALERLRDLAARAKVTLLTATKDVDHSEAAALAEWLDG 118 >gi|298291301|ref|YP_003693240.1| hypothetical protein Snov_1311 [Starkeya novella DSM 506] gi|296927812|gb|ADH88621.1| protein of unknown function DUF488 [Starkeya novella DSM 506] Length=124 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/116 (51%), Positives = 73/116 (63%), Gaps = 1/116 (0%) Query 4 ETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPE 63 E + + R YE PDDG RVLVDR+WP G+RKDD ++ +W KD+APS ELREW+ H P Sbjct 5 EPDLLMKRAYEPARPDDGARVLVDRLWPRGVRKDDLKLTLWLKDIAPSTELREWFGHDPA 64 Query 64 RFDEFASRYQEELH-DSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 RF EFA RY+EEL + ALA L +L G T + A R + A VLA L R Sbjct 65 RFKEFARRYREELRANEGALAPLEQLLGSGRATLIYAARDADHNEAVVLADYLRER 120 >gi|257056175|ref|YP_003134007.1| hypothetical protein Svir_21720 [Saccharomonospora viridis DSM 43017] gi|256586047|gb|ACU97180.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length=121 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/112 (51%), Positives = 74/112 (67%), Gaps = 0/112 (0%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 RV R+Y+D P DG RVLVDRIWP G++K++ W ++VAPS ELR WY H P++F Sbjct 7 RVTYRRIYDDPTPSDGTRVLVDRIWPRGLKKENAHYDEWLREVAPSTELRTWYGHDPKKF 66 Query 66 DEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 EF RY EL DS A LR++ R VT +TA+R + S AAVLA+ L+G Sbjct 67 AEFRRRYLTELGDSEHAARLREIAERGNVTLLTASRDIEHSQAAVLAEWLSG 118 >gi|329937385|ref|ZP_08286943.1| hypothetical protein SGM_2435 [Streptomyces griseoaurantiacus M045] gi|329303261|gb|EGG47148.1| hypothetical protein SGM_2435 [Streptomyces griseoaurantiacus M045] Length=120 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/120 (54%), Positives = 77/120 (65%), Gaps = 3/120 (2%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M R V V RVYE+ DDG RVLVDRIWP G+ KD + WCK VAPS ELR+WY H Sbjct 1 MARTKAVHVRRVYEEPARDDGTRVLVDRIWPRGMSKDRAHLHEWCKQVAPSTELRKWYGH 60 Query 61 QPERFDEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 P+RF+EF RY+EEL + + ALA LR+L G +T +TAT+ S A VLA LL Sbjct 61 VPDRFEEFGRRYREELKEPERADALAHLRELAGDRPLTLLTATKDPGISAARVLAGLLRA 120 >gi|294634153|ref|ZP_06712706.1| uroporphyrin-III c-methyltransferase [Streptomyces sp. e14] gi|292829837|gb|EFF88193.1| uroporphyrin-III c-methyltransferase [Streptomyces sp. e14] Length=124 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 58/109 (54%), Positives = 73/109 (67%), Gaps = 3/109 (2%) Query 11 RVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFAS 70 RVYED P+DG+RVLVDR+WP G+RK+D + W +DVAPS +LR WY H+P RFDEF Sbjct 9 RVYEDTSPEDGKRVLVDRVWPRGMRKEDAHLDEWLRDVAPSTDLRHWYGHEPSRFDEFRR 68 Query 71 RYQEELHDSA---ALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 RY EL D+ A+ LR L +T +TAT+ V S AAVLA+ L Sbjct 69 RYLAELRDAGHREAVGHLRDLADHDRLTLLTATKDVDHSQAAVLAEWLT 117 >gi|119714171|ref|YP_919313.1| hypothetical protein Noca_4868 [Nocardioides sp. JS614] gi|119526080|gb|ABL79450.1| protein of unknown function DUF488 [Nocardioides sp. JS614] Length=120 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 61/118 (52%), Positives = 76/118 (65%), Gaps = 3/118 (2%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M R VR+ R+Y+D DDG RVLVDR WP G+ K + WC V+PS LR+WY H Sbjct 1 MTRRPDVRLRRIYDDPTDDDGMRVLVDRRWPRGVSKVRADLDEWCSAVSPSDALRKWYGH 60 Query 61 QPERFDEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 PERFDEF +RY +EL D ++ALA LR + R +T +TATR + S AAVLA LL Sbjct 61 VPERFDEFEARYLDELEDPQRASALAHLRAMAARGRLTLLTATRDLEVSQAAVLAGLL 118 >gi|255513915|gb|EET90180.1| protein of unknown function DUF488 [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length=157 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/116 (43%), Positives = 79/116 (69%), Gaps = 1/116 (0%) Query 2 VRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQ 61 ++ +++ RVY+ +D DG R+LVDR+WP GIR+ Q + +W KDVAPS ELR+W+ HQ Sbjct 26 IKNRMIKIKRVYDKVDIHDGLRILVDRLWPRGIRRSSQNIDLWLKDVAPSTELRKWFMHQ 85 Query 62 PERFDEFASRYQEELHDSAALAELRKLTGRS-VVTPVTATRHVARSHAAVLAQLLN 116 P R++ F +Y+ EL DS ALA+L + + +T + +T+ + ++A VL ++LN Sbjct 86 PGRWESFKKKYEAELKDSKALAKLVDIALTTDTITMLYSTKDMEHNNALVLLKVLN 141 >gi|318060569|ref|ZP_07979292.1| hypothetical protein SSA3_21683 [Streptomyces sp. SA3_actG] gi|318076163|ref|ZP_07983495.1| hypothetical protein SSA3_05458 [Streptomyces sp. SA3_actF] Length=127 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/122 (52%), Positives = 77/122 (64%), Gaps = 5/122 (4%) Query 1 MVRE--TRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWY 58 MVRE T VRV R Y+ + DG RVLVDR+WP G+ K+ V W K VAPS LREWY Sbjct 1 MVREAATEVRVRRAYDPPEAADGHRVLVDRLWPRGLSKERAHVDEWLKSVAPSAALREWY 60 Query 59 HHQPERFDEFASRYQEELHDSA---ALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 H P +F EFA RY+ EL D A ALA LR L+ R +T VTAT+ + +H+ VLA+ L Sbjct 61 GHDPAKFGEFADRYRAELADPARAEALARLRTLSARGPLTLVTATKDLGHAHSRVLAREL 120 Query 116 NG 117 Sbjct 121 GA 122 >gi|266631111|emb|CBH32111.1| hypothetical protein [Streptomyces albaduncus] Length=120 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/111 (52%), Positives = 73/111 (66%), Gaps = 3/111 (2%) Query 11 RVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFAS 70 RVYE+ P +G+RVLVDR+WP G+RK+D R+ W +DVAPS ELR+WY H+P RF EF Sbjct 9 RVYEETSPQEGKRVLVDRVWPRGMRKEDARLDEWLRDVAPSSELRKWYGHEPSRFTEFRR 68 Query 71 RYQEELHDSA---ALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 RY EEL D+ A L L + +TAT+ V S AAVLA+ L G+ Sbjct 69 RYLEELRDAGHREAAGHLHDLAEHDGLVLLTATKDVDHSQAAVLAEWLAGK 119 >gi|297155885|gb|ADI05597.1| hypothetical protein SBI_02476 [Streptomyces bingchenggensis BCW-1] Length=122 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/113 (52%), Positives = 72/113 (64%), Gaps = 3/113 (2%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 +R+ RVYE DPDDG RVLVDRIWP G+ KD R+ W K APS ELR WY H PER Sbjct 9 IRIRRVYETPDPDDGTRVLVDRIWPRGLAKDAARLDEWLKAAAPSTELRRWYGHAPERSA 68 Query 67 EFASRYQEELHDS---AALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 EF RY+ EL D AA+ LR+L +T +TAT+ A+SH +LA+ + Sbjct 69 EFGRRYRAELADPERRAAVDHLRELAATGPLTLLTATKDPAQSHLPLLAEAVG 121 >gi|296271324|ref|YP_003653956.1| hypothetical protein Tbis_3373 [Thermobispora bispora DSM 43833] gi|296094111|gb|ADG90063.1| protein of unknown function DUF488 [Thermobispora bispora DSM 43833] Length=117 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 60/109 (56%), Positives = 75/109 (69%), Gaps = 3/109 (2%) Query 11 RVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFAS 70 RVY++ DDG RVLVDRIWP G+ K+ R+ W KDVAPS ELR WY H PERF EF S Sbjct 7 RVYDEPTSDDGVRVLVDRIWPRGLTKEAARLDEWIKDVAPSAELRVWYGHVPERFPEFRS 66 Query 71 RYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 RY EL + AAL LR L+ + +T +TAT+ V S+AAVLA++L+ Sbjct 67 RYLAELAEPRRQAALQHLRDLSKQGRLTLLTATKDVEHSNAAVLAEVLS 115 >gi|334365029|ref|ZP_08513997.1| conserved hypothetical protein [Alistipes sp. HGB5] gi|313158726|gb|EFR58113.1| conserved hypothetical protein [Alistipes sp. HGB5] Length=124 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/113 (49%), Positives = 74/113 (66%), Gaps = 2/113 (1%) Query 5 TRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPE- 63 TR+R+ RVYE PDDG RVLVD++WP G+RKD +W K++ PS ELR WYH P+ Sbjct 2 TRIRIKRVYEPAAPDDGCRVLVDKLWPRGVRKDALHYDMWAKEITPSPELRAWYHADPQT 61 Query 64 RFDEFASRYQEELHDSAALAEL-RKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 R+ EF RY EEL S A+ E R++ G VT + A+++ A +HA VL + L Sbjct 62 RWPEFRRRYLEELRGSQAVREFVRRIAGNETVTLLYASKNAAENHALVLQEFL 114 >gi|262204109|ref|YP_003275317.1| hypothetical protein Gbro_4278 [Gordonia bronchialis DSM 43247] gi|262087456|gb|ACY23424.1| protein of unknown function DUF488 [Gordonia bronchialis DSM 43247] Length=124 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/111 (51%), Positives = 73/111 (66%), Gaps = 3/111 (2%) Query 9 VARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEF 68 + R+Y+D DDGQRVLVDR+WP G+ K + WCK VAPS +LR+WY H P RFDEF Sbjct 8 IKRIYDDPSDDDGQRVLVDRLWPRGMSKQRAAIDEWCKTVAPSTDLRKWYAHDPVRFDEF 67 Query 69 ASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 +RY +EL D ++A A LR L +T +TA++ + S A VLA LLN Sbjct 68 RARYADELADGDQASAFAHLRDLHQHGRLTLLTASKALDISEARVLADLLN 118 >gi|336320306|ref|YP_004600274.1| hypothetical protein Celgi_1187 [Cellvibrio gilvus ATCC 13127] gi|336103887|gb|AEI11706.1| protein of unknown function DUF488 [Cellvibrio gilvus ATCC 13127] Length=123 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/115 (53%), Positives = 72/115 (63%), Gaps = 3/115 (2%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 V +ARVY+++ RVLVDR+WP G+R+DD RVG W +VAPS ELR WY H+ E +D Sbjct 6 VALARVYDEVTDAGALRVLVDRLWPRGVRRDDPRVGQWLPEVAPSNELRRWYGHRAEEYD 65 Query 67 EFASRYQEELHDS---AALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 EFA RY +EL D A L L VT VTATR V SH VLA LL+ R Sbjct 66 EFARRYAQELADGDARIAFHRLAALAHAEPVTLVTATREVDLSHLTVLAGLLDAR 120 >gi|312197339|ref|YP_004017400.1| hypothetical protein FraEuI1c_3521 [Frankia sp. EuI1c] gi|311228675|gb|ADP81530.1| protein of unknown function DUF488 [Frankia sp. EuI1c] Length=120 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/118 (50%), Positives = 74/118 (63%), Gaps = 3/118 (2%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M +V+V R YE DG RVLVDR+WP G+ + + + WCK VAPS ELR WY H Sbjct 1 MGAAAKVQVRRAYEAPATTDGTRVLVDRLWPRGLARAEASLDEWCKQVAPSTELRTWYAH 60 Query 61 QPERFDEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 PERF+EF RY++EL + ALA LR+L + +T +TATR S A VLA+LL Sbjct 61 DPERFEEFGRRYRQELAQPERAEALAHLRELARSATLTLLTATRQPEISEAQVLAELL 118 >gi|289208916|ref|YP_003460982.1| hypothetical protein TK90_1755 [Thioalkalivibrio sp. K90mix] gi|288944547|gb|ADC72246.1| protein of unknown function DUF488 [Thioalkalivibrio sp. K90mix] Length=142 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/113 (51%), Positives = 71/113 (63%), Gaps = 1/113 (0%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 RVR+ RVY+ +DPDDG RVLVDR+WP G++K + W K VAPS +LR W+ H P R+ Sbjct 3 RVRIRRVYDPVDPDDGARVLVDRLWPRGVKKSALVLDAWEKSVAPSPDLRRWFAHDPSRW 62 Query 66 DEFASRYQEELH-DSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 +F+ RYQ EL S A L R +T +TATR V SH AVL LLN Sbjct 63 RDFSRRYQAELDAGSEAFGRLLGYARRGCLTLLTATRDVEHSHVAVLRDLLNA 115 >gi|54025115|ref|YP_119357.1| hypothetical protein nfa31460 [Nocardia farcinica IFM 10152] gi|54016623|dbj|BAD57993.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=131 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/111 (55%), Positives = 70/111 (64%), Gaps = 3/111 (2%) Query 11 RVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFAS 70 RVY+ P+DG RVLVDR+WP G+RKDD W KDVAPS ELR WY H PERF EF Sbjct 9 RVYDPHTPEDGARVLVDRVWPRGVRKDDLAPVEWLKDVAPSTELRRWYGHDPERFAEFRR 68 Query 71 RYQEELHDSA---ALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 RY EL S A+ LR+ VT +TATR + S AAVLA++L R Sbjct 69 RYLAELRTSPAREAVEHLRRAVAAGPVTLLTATRDLEHSQAAVLAEVLRRR 119 >gi|260906975|ref|ZP_05915297.1| hypothetical protein BlinB_16702 [Brevibacterium linens BL2] Length=124 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/121 (41%), Positives = 80/121 (67%), Gaps = 3/121 (2%) Query 1 MVRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHH 60 M ++ +V+V R Y+D +DG R+LVDRIWP G+ KD + W K++APS +LR+WY H Sbjct 1 MTQKHQVQVRRAYDDPAQNDGTRILVDRIWPRGVSKDKAELDDWLKELAPSSDLRKWYSH 60 Query 61 QPERFDEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 P++F+EF+ RY++EL D + A +L++ + +T +TA++ S A VL +L+G Sbjct 61 DPDKFEEFSRRYRDELKDDDHAEAFKQLKEYAKKGKLTLITASKRDDISDATVLKHVLDG 120 Query 118 R 118 + Sbjct 121 K 121 >gi|302518037|ref|ZP_07270379.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302426932|gb|EFK98747.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length=119 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/114 (50%), Positives = 71/114 (63%), Gaps = 3/114 (2%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 +RV R Y+ + DG RVLVDR+WP G+ K+ V W K VAPS LR+WY H P +F Sbjct 1 MRVRRAYDPPEAADGHRVLVDRLWPRGLSKERAHVDEWLKSVAPSAALRQWYGHDPAKFG 60 Query 67 EFASRYQEELHDSA---ALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 EFA RY+ EL D A ALA LR L+ R +T VTAT+ + +H VLA+ L Sbjct 61 EFADRYRAELADPARAEALARLRTLSARGPLTLVTATKDLGHAHTRVLARELGA 114 >gi|300786417|ref|YP_003766708.1| hypothetical protein AMED_4536 [Amycolatopsis mediterranei U32] gi|299795931|gb|ADJ46306.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340527895|gb|AEK43100.1| hypothetical protein RAM_23100 [Amycolatopsis mediterranei S699] Length=120 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/119 (49%), Positives = 76/119 (64%), Gaps = 3/119 (2%) Query 2 VRETRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQ 61 ++ T VRVAR+ + P DG RVLV+R+WP G + + W + +APS +LR WY H Sbjct 1 MQPTVVRVARLSDPAGPADGVRVLVERLWPRGTARTAVVLDGWYRGLAPSDDLRTWYGHD 60 Query 62 PERFDEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 PERF EFA RY+ EL + +AALA LR+L G VT +TA+ A S AAVLA +L G Sbjct 61 PERFAEFAERYRAELREPDRAAALARLRELAGDGPVTLLTASGSPAISQAAVLAAVLTG 119 >gi|319784778|ref|YP_004144254.1| hypothetical protein Mesci_5104 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170666|gb|ADV14204.1| protein of unknown function DUF488 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length=117 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/114 (47%), Positives = 71/114 (63%), Gaps = 1/114 (0%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 ++ V R+YE DDGQRVLVDRIWP G+ K D + +W KD+APS ELR+W+ H+ R+ Sbjct 4 KIAVKRIYEPPAADDGQRVLVDRIWPRGVSKQDAALTLWLKDIAPSDELRKWFGHEAVRW 63 Query 66 DEFASRYQEEL-HDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 EF RY EL + AA+ +LR L G VT + A ++A LA L+GR Sbjct 64 AEFQERYGAELDGNGAAVTQLRGLLGNGKVTLLYGAHDEAHNNAVALAGYLHGR 117 >gi|302528367|ref|ZP_07280709.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437262|gb|EFL09078.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=119 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/115 (48%), Positives = 75/115 (66%), Gaps = 3/115 (2%) Query 6 RVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERF 65 +V+V RVY+ + DG RVLVDR+WP G+ KD + W K ++PS ELR+WY H P+R+ Sbjct 5 QVQVRRVYDAPESFDGARVLVDRLWPRGLSKDRAHLDDWLKQISPSTELRKWYAHDPDRY 64 Query 66 DEFASRYQEELHD---SAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 DEFA RY+ EL + + AL +LR L + +T +TAT+ S AAVLA LL Sbjct 65 DEFAERYRSELEEPERAEALDQLRALAKKGPLTLLTATKRSDISEAAVLADLLRS 119 >gi|291515027|emb|CBK64237.1| Uncharacterized conserved protein [Alistipes shahii WAL 8301] Length=124 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/114 (47%), Positives = 74/114 (65%), Gaps = 2/114 (1%) Query 5 TRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQP-E 63 TR+R+ RVYE PDDG RVLVDR+WP G+R+D +W +D+APS LR WYH P + Sbjct 2 TRIRIKRVYEAPAPDDGCRVLVDRLWPRGVRRDALHCDVWARDLAPSAGLRSWYHADPGD 61 Query 64 RFDEFASRYQEELHDSAALAEL-RKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 R++EF RY +EL S A+ E R + G VT + A+++ A +HA +L + L Sbjct 62 RWEEFRRRYTDELRASQAVREFVRGIEGVDTVTLLYASKNAAENHALILQEYLQ 115 >gi|340357394|ref|ZP_08680011.1| MarR family transcriptional regulator [Sporosarcina newyorkensis 2681] gi|339617744|gb|EGQ22362.1| MarR family transcriptional regulator [Sporosarcina newyorkensis 2681] Length=125 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/116 (45%), Positives = 74/116 (64%), Gaps = 6/116 (5%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 V++ RVY+ + DG RVLVDR+WP G+ K+D ++ W K+V PSKELREW+ H PE+FD Sbjct 8 VQIKRVYDKAEKADGIRVLVDRLWPRGVSKEDAKLDDWLKEVGPSKELREWFGHDPEKFD 67 Query 67 EFASRYQEEL-HDSAALAELRKLTGRSV-----VTPVTATRHVARSHAAVLAQLLN 116 EF +Y+EEL ++ EL KL RS +T V ++ + A VL +LL+ Sbjct 68 EFKRKYKEELKNNKVQTEELNKLINRSKEHDEQLTLVFGSKDEKHNQAIVLKELLD 123 >gi|302541237|ref|ZP_07293579.1| putative uroporphyrin-III c-methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302458855|gb|EFL21948.1| putative uroporphyrin-III c-methyltransferase [Streptomyces himastatinicus ATCC 53653] Length=111 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/109 (48%), Positives = 70/109 (65%), Gaps = 3/109 (2%) Query 12 VYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEFASR 71 +Y+ +PDDG RVLVDRIWP G+ K D R+ W K APS ELR WY H+PER+ EFA R Sbjct 1 MYDAPEPDDGTRVLVDRIWPRGLAKADARLDEWAKAAAPSTELRRWYGHEPERYAEFARR 60 Query 72 YQEELHDS---AALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 Y+ EL + A+ LR+L G +T +TA + ++ HA +LA + G Sbjct 61 YRAELAEPEHREAVDHLRELAGHGTLTLLTAVKDLSHGHAGLLADAVRG 109 >gi|291450504|ref|ZP_06589894.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291353453|gb|EFE80355.1| conserved hypothetical protein [Streptomyces albus J1074] Length=132 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/113 (47%), Positives = 71/113 (63%), Gaps = 4/113 (3%) Query 8 RVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQP-ERFD 66 RV RVYE +P DG RVLVDR+WP G+ K+ V +W K++ PS ELR+WYH P ER+D Sbjct 7 RVRRVYEPAEPSDGTRVLVDRLWPRGVSKERAAVDVWLKEITPSTELRDWYHQNPEERYD 66 Query 67 EFASRYQEELHDS---AALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 F RY+ EL D AA+ +L L + VT +TA + + RS VL + L+ Sbjct 67 GFTERYRTELADPAHRAAVGQLLDLMDQGTVTLITAVKEIDRSQIPVLVEHLH 119 >gi|256831489|ref|YP_003160216.1| hypothetical protein Jden_0239 [Jonesia denitrificans DSM 20603] gi|256685020|gb|ACV07913.1| protein of unknown function DUF488 [Jonesia denitrificans DSM 20603] Length=120 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/111 (46%), Positives = 71/111 (64%), Gaps = 1/111 (0%) Query 8 RVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDE 67 R+ RVYE DP+DG RVLVDR+WP G+ K D + +W KD+APS +LR+W+H +P+ FDE Sbjct 6 RLKRVYEAPDPNDGFRVLVDRLWPRGLSKSDAHIDMWPKDIAPSTQLRQWFHDEPQDFDE 65 Query 68 FASRYQEELHDSAALAELR-KLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 FA RY+ EL +AA+ E+ L VT + A + +HA ++ L Sbjct 66 FAHRYRRELATNAAVHEVTAALRVYDTVTLLYAAKDTEHNHAVIVRDYLTS 116 >gi|304312379|ref|YP_003811977.1| hypothetical protein HDN1F_27510 [gamma proteobacterium HdN1] gi|301798112|emb|CBL46334.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length=112 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/110 (44%), Positives = 72/110 (66%), Gaps = 0/110 (0%) Query 9 VARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFDEF 68 V R YE + DG+R+LVDR+WP G++K++ + +W KDVAPS ELR+W+ H PE++ EF Sbjct 2 VKRAYEAPEKTDGERILVDRLWPRGLKKENADIDLWLKDVAPSTELRKWFGHDPEKWAEF 61 Query 69 ASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 RY+ EL + AL ELR+ + + +T V + ++A VL QLL + Sbjct 62 QKRYKAELKGNTALDELREHSHKGHITLVFSAHDEEHNNAIVLQQLLEKK 111 >gi|148262413|ref|YP_001229119.1| hypothetical protein Gura_0330 [Geobacter uraniireducens Rf4] gi|146395913|gb|ABQ24546.1| protein of unknown function DUF488 [Geobacter uraniireducens Rf4] Length=112 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/110 (44%), Positives = 72/110 (66%), Gaps = 1/110 (0%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 VR+ R+Y+ +P DG+R+L DR+WP G+ K+ R+ W K++APS ELR W+ H P R+D Sbjct 2 VRIKRMYDPPEPGDGRRLLTDRLWPRGMTKEAARIDDWIKELAPSTELRTWFGHDPARWD 61 Query 67 EFASRYQEELHDSA-ALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 EF +RY+EEL A LA+LR + +T + A R ++A VL ++L Sbjct 62 EFKARYKEELQAKADLLAKLRAEAKKGTITLLFAARDTEHNNAVVLKEML 111 >gi|159186149|ref|NP_356259.2| hypothetical protein Atu4395 [Agrobacterium tumefaciens str. C58] gi|159141283|gb|AAK89044.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length=116 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/112 (42%), Positives = 71/112 (64%), Gaps = 1/112 (0%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 +R+ R+YE DDG RVLVDR+WP G+RK+D ++ +W K++APS ELR+ + H P RF Sbjct 4 IRIKRIYEPASDDDGTRVLVDRLWPRGMRKEDAKLSLWMKEIAPSNELRKQFSHMPSRFA 63 Query 67 EFASRYQEELH-DSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNG 117 +F Y +EL + A+A +++L + VT + A +HA VLA L+ Sbjct 64 DFTGHYHQELSANPDAVARMKELMAKGRVTLLYAAHDTEHNHALVLADYLHS 115 >gi|39998531|ref|NP_954482.1| hypothetical protein GSU3442 [Geobacter sulfurreducens PCA] gi|39985478|gb|AAR36832.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298507475|gb|ADI86198.1| protein of unknown function DUF488 [Geobacter sulfurreducens KN400] Length=114 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/110 (48%), Positives = 70/110 (64%), Gaps = 1/110 (0%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 VRV R+Y++ +DG RVLVDR+WP GI KD R+ W K++APS ELR+W+ H P R+D Sbjct 2 VRVKRIYDEPATEDGTRVLVDRLWPRGIAKDKARIDEWLKEIAPSDELRQWFGHDPARWD 61 Query 67 EFASRYQEELHDSAALAE-LRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 EF RY+ EL A L + LRKL VT + A + ++A VL +L Sbjct 62 EFRERYRRELDAKAELLDGLRKLAAGGTVTLLFAAKDEQHNNAVVLKDIL 111 >gi|184199725|ref|YP_001853932.1| hypothetical protein KRH_00790 [Kocuria rhizophila DC2201] gi|183579955|dbj|BAG28426.1| hypothetical protein [Kocuria rhizophila DC2201] Length=116 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/113 (47%), Positives = 73/113 (65%), Gaps = 3/113 (2%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 V V R+Y++ +DG RVLVDR+WP GIRK D + W K+V+PS ELR+WY H PE+F+ Sbjct 3 VVVKRIYDEPAQNDGTRVLVDRVWPRGIRKADAHLDDWNKEVSPSTELRKWYGHDPEKFE 62 Query 67 EFASRYQEELHDS---AALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLN 116 EF+SRY++EL L +LR +T +TA++ V S A VL +L+ Sbjct 63 EFSSRYRKELESGEGKEGLQKLRDSVKGKRLTLLTASKAVDISQATVLKTILS 115 >gi|119718863|ref|YP_925828.1| hypothetical protein Noca_4646 [Nocardioides sp. JS614] gi|119539524|gb|ABL84141.1| protein of unknown function DUF488 [Nocardioides sp. JS614] Length=111 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/111 (51%), Positives = 65/111 (59%), Gaps = 1/111 (0%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 +R+ RVYED DG R+LVDRIWP G+ K D V W KDV PS ELR W+ H P RF Sbjct 1 MRIKRVYEDPAKADGHRILVDRIWPRGLTKADAAVDEWLKDVGPSTELRRWFGHDPARFG 60 Query 67 EFASRYQEELHDSAALAELRKLTGR-SVVTPVTATRHVARSHAAVLAQLLN 116 EFA RY+ EL S A A LR + VVT V + R + A VL LL Sbjct 61 EFARRYRAELDGSDAFARLRAVRDEHRVVTLVYSARDTEHNQAVVLRDLLG 111 >gi|325123337|gb|ADY82860.1| putative uroporphyrin-III C-methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length=118 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 41/110 (38%), Positives = 75/110 (69%), Gaps = 1/110 (0%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYH-HQPERF 65 + + R+YE+ +P DG+R+LVDR+W GI K++ + +W K++APS ELR+W+H P+ + Sbjct 3 IHIKRIYENAEPSDGKRILVDRLWSRGISKENAHLDLWLKEIAPSTELRKWFHAATPDHW 62 Query 66 DEFASRYQEELHDSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLL 115 EF RY +EL ++A+ EL+++ ++ +T + + + V +HA +L + L Sbjct 63 QEFKQRYLKELETNSAVQELQQIALKNTITLLYSAKDVENNHAIILKEYL 112 >gi|258645758|ref|ZP_05733227.1| transcriptional regulator, MarR family [Dialister invisus DSM 15470] gi|260403128|gb|EEW96675.1| transcriptional regulator, MarR family [Dialister invisus DSM 15470] Length=120 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 48/118 (41%), Positives = 73/118 (62%), Gaps = 4/118 (3%) Query 5 TRVRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPER 64 R+ + RVYE PDDG+R+LVDR+WP G+ K+ + IW KDVAPS LR+W+ H P++ Sbjct 1 MRICIKRVYEAASPDDGERILVDRLWPRGLSKEKAAIDIWEKDVAPSAALRKWFGHDPDK 60 Query 65 FDEFASRYQEELHDSAALAELRK----LTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 FD+F ++Y++EL D+ A+ L L VT + + + AAVL + L+ + Sbjct 61 FDDFRNKYRKELEDNPAIKRLEDMIHHLGKDKKVTLLFGAKDETHNQAAVLKEYLDSK 118 >gi|298292289|ref|YP_003694228.1| hypothetical protein Snov_2314 [Starkeya novella DSM 506] gi|296928800|gb|ADH89609.1| protein of unknown function DUF488 [Starkeya novella DSM 506] Length=127 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 50/113 (45%), Positives = 72/113 (64%), Gaps = 1/113 (0%) Query 7 VRVARVYEDIDPDDGQRVLVDRIWPHGIRKDDQRVGIWCKDVAPSKELREWYHHQPERFD 66 +R+ R Y+ + DDG RVLVDR+WP G+RKDD ++ +W K++APS ELR+W+ H+P RF+ Sbjct 10 LRLKRAYDPVADDDGARVLVDRLWPRGVRKDDLKLTLWLKEIAPSAELRKWFGHEPARFE 69 Query 67 EFASRYQEELH-DSAALAELRKLTGRSVVTPVTATRHVARSHAAVLAQLLNGR 118 EF+ RY+ EL + A+A L +L VT + A + A VL L R Sbjct 70 EFSRRYRAELDANGDAVARLEELLKHGRVTLLYAAHDATHNDAVVLDAYLRAR 122 Lambda K H 0.321 0.135 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129536132814 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40