BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3082c
Length=340
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842652|ref|NP_337689.1| AraC family transcriptional regulat... 689 0.0
gi|253797818|ref|YP_003030819.1| araC/xylS-family virulence-regu... 689 0.0
gi|15610219|ref|NP_217598.1| virulence-regulating transcriptiona... 689 0.0
gi|340628073|ref|YP_004746525.1| virulence-regulating transcript... 687 0.0
gi|289444645|ref|ZP_06434389.1| araC/xylS-family virulence-regul... 686 0.0
gi|31794261|ref|NP_856754.1| virulence-regulating transcriptiona... 684 0.0
gi|296916|emb|CAA48342.1| 38K [Mycobacterium tuberculosis H37Rv] 670 0.0
gi|289571287|ref|ZP_06451514.1| LOW QUALITY PROTEIN: araC/xylS-f... 635 2e-180
gi|226363594|ref|YP_002781376.1| AraC family transcriptional reg... 487 1e-135
gi|311743721|ref|ZP_07717527.1| AraC family transcriptional regu... 384 1e-104
gi|335420252|ref|ZP_08551290.1| araC/xylS-family virulence-regul... 230 2e-58
gi|94314148|ref|YP_587357.1| AraC family transcriptional regulat... 196 6e-48
gi|340628710|ref|YP_004747162.1| transcriptional regulatory prot... 192 7e-47
gi|221209501|ref|ZP_03582482.1| transcriptional regulator, AraC ... 191 2e-46
gi|161520218|ref|YP_001583645.1| AraC family transcriptional reg... 190 3e-46
gi|84498618|ref|ZP_00997381.1| putative transcriptional regulato... 190 3e-46
gi|183983310|ref|YP_001851601.1| AraC/XylS family transcriptiona... 190 3e-46
gi|325000154|ref|ZP_08121266.1| putative transcriptional regulat... 189 4e-46
gi|73538979|ref|YP_299346.1| AraC family transcriptional regulat... 188 1e-45
gi|119468607|ref|ZP_01611659.1| putative transcriptional regulat... 188 1e-45
gi|333990278|ref|YP_004522892.1| AraC/XylS family transcriptiona... 187 3e-45
gi|121639652|ref|YP_979876.1| AraC/XylS family transcriptional r... 186 5e-45
gi|15610872|ref|NP_218253.1| transcriptional regulatory protein ... 186 5e-45
gi|289755867|ref|ZP_06515245.1| transcriptional regulatory prote... 185 1e-44
gi|289571981|ref|ZP_06452208.1| transcriptional regulator, araC/... 185 1e-44
gi|339300146|gb|AEJ52256.1| transcriptional regulatory protein A... 184 2e-44
gi|308232552|ref|ZP_07416433.2| transcriptional regulator, araC/... 184 2e-44
gi|240172318|ref|ZP_04750977.1| AraC family transcriptional regu... 181 1e-43
gi|54023095|ref|YP_117337.1| putative transcriptional regulator ... 180 3e-43
gi|332534194|ref|ZP_08410041.1| putative transcriptional regulat... 180 4e-43
gi|315123262|ref|YP_004065268.1| AraC family transcriptional reg... 175 1e-41
gi|183985244|ref|YP_001853535.1| AraC/XylS family transcriptiona... 174 2e-41
gi|118619491|ref|YP_907823.1| AraC/XylS family transcriptional r... 174 2e-41
gi|78062048|ref|YP_371956.1| AraC family transcriptional regulat... 173 3e-41
gi|77362173|ref|YP_341747.1| AraC family transcriptional regulat... 172 5e-41
gi|157369419|ref|YP_001477408.1| AraC family transcriptional reg... 167 3e-39
gi|302556064|ref|ZP_07308406.1| transcriptional regulator [Strep... 167 3e-39
gi|134100828|ref|YP_001106489.1| putative transcriptional regula... 163 4e-38
gi|299532411|ref|ZP_07045803.1| helix-turn-helix domain-containi... 163 4e-38
gi|221066563|ref|ZP_03542668.1| transcriptional regulator, AraC ... 162 5e-38
gi|73537684|ref|YP_298051.1| Fis-type helix-turn-helix domain-co... 157 3e-36
gi|262279047|ref|ZP_06056832.1| transcriptional regulator [Acine... 156 5e-36
gi|169631076|ref|YP_001704725.1| transcriptional regulatory prot... 155 6e-36
gi|121608263|ref|YP_996070.1| helix-turn-helix domain-containing... 154 2e-35
gi|70730891|ref|YP_260632.1| AraC family transcriptional regulat... 151 2e-34
gi|111020081|ref|YP_703053.1| transcriptional regulator [Rhodoco... 150 2e-34
gi|319949118|ref|ZP_08023211.1| transcriptional regulator [Dietz... 149 6e-34
gi|262368920|ref|ZP_06062249.1| HTH-type transcriptional regulat... 147 2e-33
gi|289441174|ref|ZP_06430918.1| transcriptional regulator, araC/... 147 2e-33
gi|167034045|ref|YP_001669276.1| AraC family transcriptional reg... 146 5e-33
>gi|15842652|ref|NP_337689.1| AraC family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|13882970|gb|AAK47503.1| transcriptional regulator, AraC family [Mycobacterium tuberculosis
CDC1551]
Length=352
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 13 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 72
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 73 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 132
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 133 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 192
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 193 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 252
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 253 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 312
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR
Sbjct 313 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 352
>gi|253797818|ref|YP_003030819.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis KZN 1435]
gi|289553127|ref|ZP_06442337.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis KZN 605]
gi|289746891|ref|ZP_06506269.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
gi|253319321|gb|ACT23924.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis KZN 1435]
gi|289437759|gb|EFD20252.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis KZN 605]
gi|289687419|gb|EFD54907.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
gi|328457597|gb|AEB03020.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis KZN 4207]
Length=341
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 2 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 61
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 62 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 121
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 122 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 181
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 182 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 241
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 242 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 301
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR
Sbjct 302 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 341
>gi|15610219|ref|NP_217598.1| virulence-regulating transcriptional regulator VirS [Mycobacterium
tuberculosis H37Rv]
gi|148662936|ref|YP_001284459.1| AraC family transcription regulator [Mycobacterium tuberculosis
H37Ra]
gi|148824274|ref|YP_001289028.1| virulence-regulating transcriptional regulator VirS [Mycobacterium
tuberculosis F11]
53 more sequence titles
Length=340
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR
Sbjct 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
>gi|340628073|ref|YP_004746525.1| virulence-regulating transcriptional regulator [Mycobacterium
canettii CIPT 140010059]
gi|340006263|emb|CCC45439.1| virulence-regulating transcriptional regulator VIRS (ARAC/XYLS
family) [Mycobacterium canettii CIPT 140010059]
Length=340
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/340 (99%), Positives = 339/340 (99%), Gaps = 0/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARY AQPGLY
Sbjct 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYFAQPGLY 300
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR
Sbjct 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
>gi|289444645|ref|ZP_06434389.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis T46]
gi|289751756|ref|ZP_06511134.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis T92]
gi|289755199|ref|ZP_06514577.1| virulence-regulating transcriptional regulator virs [Mycobacterium
tuberculosis EAS054]
gi|289417564|gb|EFD14804.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis T46]
gi|289692343|gb|EFD59772.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Mycobacterium tuberculosis T92]
gi|289695786|gb|EFD63215.1| virulence-regulating transcriptional regulator virs [Mycobacterium
tuberculosis EAS054]
Length=340
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/340 (99%), Positives = 339/340 (99%), Gaps = 0/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSA NRSCRRWFGMTPRQYRAYGGVSGR
Sbjct 301 LSQIAVLLGYSEQSARNRSCRRWFGMTPRQYRAYGGVSGR 340
>gi|31794261|ref|NP_856754.1| virulence-regulating transcriptional regulator VirS [Mycobacterium
bovis AF2122/97]
gi|121638967|ref|YP_979191.1| virulence-regulating transcriptional regulator VirS [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224991459|ref|YP_002646148.1| virulence-regulating transcriptional regulator [Mycobacterium
bovis BCG str. Tokyo 172]
gi|31619856|emb|CAD96796.1| VIRULENCE-REGULATING TRANSCRIPTIONAL REGULATOR VIRS (ARAC/XYLS
FAMILY) [Mycobacterium bovis AF2122/97]
gi|121494615|emb|CAL73096.1| Virulence-regulating transcriptional regulator virS (araC/xylS
family) [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224774574|dbj|BAH27380.1| virulence-regulating transcriptional regulator [Mycobacterium
bovis BCG str. Tokyo 172]
gi|341603006|emb|CCC65684.1| Virulence-regulating transcriptional regulator virS (araC/xylS
family) [Mycobacterium bovis BCG str. Moreau RDJ]
Length=340
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/340 (99%), Positives = 339/340 (99%), Gaps = 0/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSALNRSCR WFGMTPRQYRAYGGVSGR
Sbjct 301 LSQIAVLLGYSEQSALNRSCRCWFGMTPRQYRAYGGVSGR 340
>gi|296916|emb|CAA48342.1| 38K [Mycobacterium tuberculosis H37Rv]
Length=339
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/340 (98%), Positives = 337/340 (99%), Gaps = 1/340 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMR++GADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 1 MELGSLIRATNLWGYTDLMRDVGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGG ++ ARVFSFRHAQLGTDAAY
Sbjct 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGG-RSGARVFSFRHAQLGTDAAY 179
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 180 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 239
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 240 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 299
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSGR 340
LSQIAVLLGYSEQSA NRSCRRWFGMTPRQYRAYGGVSGR
Sbjct 300 LSQIAVLLGYSEQSARNRSCRRWFGMTPRQYRAYGGVSGR 339
>gi|289571287|ref|ZP_06451514.1| LOW QUALITY PROTEIN: araC/xylS-family virulence-regulating transcriptional
regulator virS [Mycobacterium tuberculosis T17]
gi|289545041|gb|EFD48689.1| LOW QUALITY PROTEIN: araC/xylS-family virulence-regulating transcriptional
regulator virS [Mycobacterium tuberculosis T17]
Length=315
Score = 635 bits (1639), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 315/315 (100%), Positives = 315/315 (100%), Gaps = 0/315 (0%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA
Sbjct 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASA 60
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT
Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY
Sbjct 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG
Sbjct 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY
Sbjct 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
Query 301 LSQIAVLLGYSEQSA 315
LSQIAVLLGYSEQSA
Sbjct 301 LSQIAVLLGYSEQSA 315
>gi|226363594|ref|YP_002781376.1| AraC family transcriptional regulator [Rhodococcus opacus B4]
gi|226242083|dbj|BAH52431.1| putative AraC family transcriptional regulator [Rhodococcus opacus
B4]
Length=335
Score = 487 bits (1253), Expect = 1e-135, Method: Compositional matrix adjust.
Identities = 241/331 (73%), Positives = 267/331 (81%), Gaps = 0/331 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+GSLIRATNLWGY DLMRELGADP PFL RF IPPG+EH+EDAF+ +L+ASA +
Sbjct 1 MGSLIRATNLWGYGDLMRELGADPEPFLARFHIPPGVEHEEDAFVPFESVAHVLDASAVD 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
L CPDFGLRL+ WQGL ILGPVAVIARNA T+ G EAI RY YVHSPAL LTV TA
Sbjct 61 LGCPDFGLRLSHWQGLDILGPVAVIARNARTVQGAFEAIARYFYVHSPALKLTVGPRTAG 120
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
+VRF YE+TE + Y QGYEL+MAN R++RLLGGP AR + SF H QLG+DAAYR+
Sbjct 121 GDVRFVYEMTEQSLRYLPQGYELAMANGVRILRLLGGPDARPSLMSFVHGQLGSDAAYRD 180
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLA 242
AL C V FG++WCGFE+ LA R ID ADPET+RIATKYLES YLPS A LSERV LA
Sbjct 181 ALDCVVLFGQSWCGFELPRALADRRIDSADPETRRIATKYLESHYLPSTAALSERVAELA 240
Query 243 RRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLS 302
RRLLPTG CSAEAIADQL MHPRTLQRRLA EG+RC DLIERERRAQAARYLA+PG +L
Sbjct 241 RRLLPTGHCSAEAIADQLSMHPRTLQRRLAEEGVRCQDLIERERRAQAARYLAEPGFHLG 300
Query 303 QIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
QIA LLGY+EQS LNRSCRRWFG TPRQYRA
Sbjct 301 QIAGLLGYTEQSTLNRSCRRWFGKTPRQYRA 331
>gi|311743721|ref|ZP_07717527.1| AraC family transcriptional regulator [Aeromicrobium marinum
DSM 15272]
gi|311312851|gb|EFQ82762.1| AraC family transcriptional regulator [Aeromicrobium marinum
DSM 15272]
Length=343
Score = 384 bits (986), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 197/331 (60%), Positives = 238/331 (72%), Gaps = 3/331 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+GSL+RA+ LWGY +L+ +LG DP RF I PG+E Q + F+S+ G+VR+LE +AAE
Sbjct 10 VGSLLRASALWGYDELVTQLGGDPAALRSRFGIEPGVETQPEGFVSVRGYVRLLETTAAE 69
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
LDCPD GLRL+ WQGL +LGPVAVIARN T+ L AI RYLY HSPAL + +
Sbjct 70 LDCPDLGLRLSGWQGLDMLGPVAVIARNNPTVQEALGAIARYLYAHSPALRMEAFAGEG- 128
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
++RF YEV EP + Q YE+SM +++RLLGG A SF H Q DAAY
Sbjct 129 PHLRFEYEVDEPFLDDLRQSYEVSMGIVVQILRLLGGSGPIA--VSFTHQQTAPDAAYER 186
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLA 242
LGC VRFG+ WCGFEV LA RPID A PET+RIA YLES+Y ATL+ER LA
Sbjct 187 VLGCPVRFGQAWCGFEVSPELAARPIDTAHPETQRIAVMYLESRYPVGTATLAERTSELA 246
Query 243 RRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLS 302
RRLL TG C+ ++IADQL++HPRTLQR+LA EG+RC DLIE R+ QAA YLAQPGL+LS
Sbjct 247 RRLLMTGSCTIDSIADQLNLHPRTLQRQLAREGVRCQDLIESARKDQAAHYLAQPGLHLS 306
Query 303 QIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
Q+A LLGY+EQS+LNRSCRRWFG TP Q RA
Sbjct 307 QVAALLGYAEQSSLNRSCRRWFGQTPSQVRA 337
>gi|335420252|ref|ZP_08551290.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Salinisphaera shabanensis E1L3A]
gi|334894611|gb|EGM32796.1| araC/xylS-family virulence-regulating transcriptional regulator
virS [Salinisphaera shabanensis E1L3A]
Length=342
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/331 (40%), Positives = 185/331 (56%), Gaps = 4/331 (1%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ SL+R + L G+ +R+LG DP L IP IE Q DAF+S +R+LE A
Sbjct 1 MTSLVRNSALDGFEAFVRQLGGDPQALLSDCGIPLDIETQTDAFLSYRALIRLLELGAER 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
L CPDFG+R+A+ QG+GILGP+AV+ R+A T+ E +YL+V +P +T+ AR
Sbjct 61 LQCPDFGMRMAQAQGIGILGPLAVVVRHAGTVAQAFEQAAKYLHVFNPGQRMTIRRNGAR 120
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
+RF ++ +PY Q E ++ R + L GG A R F +QL + YRE
Sbjct 121 VCLRF--QILLDNVPYARQANERALVFLKRTLEL-GGEAAPPRRVLFSDSQLAPTSVYRE 177
Query 183 ALGC-TVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGL 241
G + F CG +VD + ++P + +A ++E + +S RV +
Sbjct 178 VFGTDALSFNEAVCGLDVDRATMTASLRRSNPHIRSMAIAFMEQTGGTREREVSTRVREI 237
Query 242 ARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYL 301
RRLLPTG + A+ L+++ RTLQRRL EG +++ R A RYL + L L
Sbjct 238 CRRLLPTGGVGIDIAAEYLNLNRRTLQRRLVDEGTSFSAVLDAVRIDLATRYLGESDLPL 297
Query 302 SQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
SQ+A LLGY+EQSA NRSCRRWFG TPR R
Sbjct 298 SQVAALLGYTEQSAFNRSCRRWFGETPRVRR 328
>gi|94314148|ref|YP_587357.1| AraC family transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93358000|gb|ABF12088.1| transcriptional regulator, AraC family [Cupriavidus metallidurans
CH34]
Length=339
Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/334 (34%), Positives = 169/334 (51%), Gaps = 2/334 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ +L+R + L GY LMR +G DP P LRR+ + G +DA +SL V +LEASA +
Sbjct 1 MDALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQ 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTV--SSTT 120
DFGLRL+ Q + +LGP+++ +NA T+ G++ +++VHSP L TV S
Sbjct 61 TRTGDFGLRLSNHQSIDVLGPLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEI 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
A+ E+ P Q +L +A+ RLL G + R S H + + + Y
Sbjct 121 AKDAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGDRYALRAVSIPHTPIASLSTY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
G V + + + D +RIA Y+ + ++S+RV
Sbjct 181 ERFFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQ 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
+ R L T S ++AD L MHPRT+QRRL AE + R+ A RYL++ L
Sbjct 241 VLRDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLP 300
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAY 334
L QI +LLG QSAL+R+CR+W+G P R +
Sbjct 301 LGQITLLLGLPAQSALSRACRQWYGAAPSALRKH 334
>gi|340628710|ref|YP_004747162.1| transcriptional regulatory protein [Mycobacterium canettii CIPT
140010059]
gi|340006900|emb|CCC46089.1| transcriptional regulatory protein (probably ARAC/XYLS-family)
[Mycobacterium canettii CIPT 140010059]
Length=353
Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 125/333 (38%), Positives = 174/333 (53%), Gaps = 13/333 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A
Sbjct 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117
Query 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
RS + + + EP PYP Q EL++ A +IRLL G H L +A
Sbjct 118 GQRSFIALEFLLDEPA-PYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
Y + GC F GF + RP++H D R+ YL S P + E V
Sbjct 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNH-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+ +A LGY+EQS L RSC+RWFG P YR
Sbjct 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326
>gi|221209501|ref|ZP_03582482.1| transcriptional regulator, AraC family [Burkholderia multivorans
CGD1]
gi|221170189|gb|EEE02655.1| transcriptional regulator, AraC family [Burkholderia multivorans
CGD1]
Length=338
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/330 (34%), Positives = 171/330 (52%), Gaps = 2/330 (0%)
Query 6 LIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDC 65
L+RA+ L GY LMR++G DP+P LRR+ I ++D +SL +LEASA C
Sbjct 4 LLRASGLRGYPTLMRDMGCDPVPLLRRYHITEAALERDDTLISLRSATHLLEASAEVTGC 63
Query 66 PDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVS--STTARS 123
DFGLRL+ +Q + +LGP++V+ RNA T+ L + RYL+VHSP + ++V+ S +
Sbjct 64 GDFGLRLSSYQSIDVLGPLSVVLRNAPTIRDALNDVMRYLFVHSPGIVVSVNERSRLVEN 123
Query 124 NVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREA 183
V E+ G Q +L +A+A +RL G + + S H + A Y
Sbjct 124 TVAVSVELHLSGPVVTRQNSDLCLADAHNFLRLFAGDRYALQAVSIPHEPVVGRAVYERF 183
Query 184 LGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLAR 243
G + + + A+ +IA Y+ + + + S+RV + R
Sbjct 184 FGAKLLEEPVGATLYLARDTFTANVQGANASFHQIAEDYIFRNFGAAQGSTSDRVRQVLR 243
Query 244 RLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQ 303
+ L T +A L +HPRTLQRRL AEG L + R+ A YL L + Q
Sbjct 244 QTLGTSSADKAGVAAVLALHPRTLQRRLCAEGTSFEILRDDVRKQLAVHYLRNTRLSIGQ 303
Query 304 IAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
I+++LG+ QSAL+R+CR+WF +TP + R
Sbjct 304 ISLMLGFPAQSALSRACRQWFDLTPSEIRV 333
>gi|161520218|ref|YP_001583645.1| AraC family transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|189353604|ref|YP_001949231.1| AraC family transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|160344268|gb|ABX17353.1| transcriptional regulator, AraC family [Burkholderia multivorans
ATCC 17616]
gi|189337626|dbj|BAG46695.1| AraC family transcriptional regulator [Burkholderia multivorans
ATCC 17616]
Length=338
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/330 (34%), Positives = 171/330 (52%), Gaps = 2/330 (0%)
Query 6 LIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDC 65
L+RA+ L GY LMR++G DP+P LRR+ I ++D +SL +LEASA C
Sbjct 4 LLRASGLRGYPALMRDMGCDPVPLLRRYHITEAALERDDTLISLRSATHLLEASAEVTGC 63
Query 66 PDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVS--STTARS 123
DFGLRL+ +Q + +LGP++V+ RNA T+ L + RYL+VHSP + ++V+ S +
Sbjct 64 GDFGLRLSSYQSIDVLGPLSVVLRNAPTIRDALNDVMRYLFVHSPGIVVSVNERSRLVEN 123
Query 124 NVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREA 183
V E+ G Q +L +A+A +RL G + + S H + A Y
Sbjct 124 TVAVSVELHLSGPVVTRQNSDLCLADAHNFLRLFAGDRYALQAVSIPHEPVVGRAVYERF 183
Query 184 LGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLAR 243
G + + + A+ +IA Y+ + + + S+RV + R
Sbjct 184 FGARLLEEPVGATLYLARDTFAANVQGANASFHQIAEDYIFRNFGAAQGSTSDRVRQVLR 243
Query 244 RLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQ 303
+ L T +A L +HPRTLQRRL AEG L + R+ A YL L + Q
Sbjct 244 QTLGTSSADKAGVAAVLALHPRTLQRRLCAEGTSFEILRDDVRKQLAVHYLRNTRLSIGQ 303
Query 304 IAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
I+++LG+ QSAL+R+CR+WF +TP + R
Sbjct 304 ISLMLGFPAQSALSRACRQWFDLTPSEIRV 333
>gi|84498618|ref|ZP_00997381.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
gi|84381151|gb|EAP97036.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
Length=338
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/339 (37%), Positives = 173/339 (52%), Gaps = 3/339 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+G +IRA +L G+ L+RELG DP RF I G +DA +S+ RML+ +A E
Sbjct 1 MGPMIRAASLRGFAPLVRELGGDPDALYARFGIDVGALAHDDALVSITDHDRMLDVTARE 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT-- 120
LDCPD GLRLA Q + ILGP+AV ++T+ +E +++VHSPAL++ V
Sbjct 61 LDCPDLGLRLATSQDITILGPMAVAIEASSTVAEAVECASSFIFVHSPALSIGVEPDPRG 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
R V Y PY QG EL +A ++ L G + R HA L + Y
Sbjct 121 VRGVVALTYRKDPRQSPYSPQGIELGLALFHQVAAFLIGERYGLRSVEIPHAPLSPVSRY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
EA G V+FG V + A+ +A K+L S P+ T++ RV
Sbjct 181 VEAFGAEVKFGGETPALRVHRSTMDATFESANAAIHAMALKHLRSHENPTR-TVAARVRL 239
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
+L S + A L + PRTLQR LA E ++++ R A RYL L
Sbjct 240 ALAEVLGNSDPSLDTAARLLQVQPRTLQRHLAQENTTFELVLDQVRHEAARRYLTMTDLP 299
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVSG 339
+SQIA L+G++EQS L+R+ RRW G +PR+ R G+S
Sbjct 300 MSQIAALVGFAEQSTLSRAVRRWEGQSPREVRHAAGLSS 338
>gi|183983310|ref|YP_001851601.1| AraC/XylS family transcriptional regulator [Mycobacterium marinum
M]
gi|183176636|gb|ACC41746.1| transcriptional regulatory protein (probably AraC/XylS-family)
[Mycobacterium marinum M]
Length=344
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/329 (37%), Positives = 168/329 (52%), Gaps = 1/329 (0%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
S+IR T L GY L+ ELGADP L R + + DAF++ + +E++AA
Sbjct 2 SVIRGTALTGYPALVSELGADPEALLARAGVKRSDVGRFDAFITYLALIHAVESAAAVTK 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSN 124
PDFG RLA QG+ ILGPV V AR + ++ L+ YL +SPA+ T+S
Sbjct 62 TPDFGRRLAERQGIEILGPVGVAARTSKSVAEALDTFEHYLAAYSPAIAATMSREPGGEA 121
Query 125 VRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREAL 184
+++ P Q ELS+ R++R L G V H L Y
Sbjct 122 SFLEFKILIAHPPAHPQTTELSLGVMLRVLRFLLGAGYAPTVVDLPHPALTPREDYLRYF 181
Query 185 GCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLARR 244
CT RFG GF + RP+ D R+ +YL++ T++ + L R+
Sbjct 182 ACTPRFGSHRGGFRLPSEDLQRPLVR-DELAHRVVLEYLDTVIDRQRPTMASSIRELIRQ 240
Query 245 LLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQI 304
LLPTG + IADQ +HP+ L+RRLAAEG + +++ RR RYL + L+ +
Sbjct 241 LLPTGAATVPVIADQFRLHPKALRRRLAAEGTNFNAVVDDVRREVTERYLRDSDMTLTHL 300
Query 305 AVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
A LGY+EQS L+RSC+RWFG +P RA
Sbjct 301 ARQLGYAEQSVLSRSCQRWFGASPASLRA 329
>gi|325000154|ref|ZP_08121266.1| putative transcriptional regulator [Pseudonocardia sp. P1]
Length=341
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/343 (40%), Positives = 175/343 (52%), Gaps = 12/343 (3%)
Query 1 MELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPP-GIEHQE-DAFMSLAGFVRMLEA 58
M GSL RA L G L+ ELG D L RF IP ++ + DA + +LE
Sbjct 1 MGTGSLTRARALRGLPGLVDELGGDGAAMLDRFHIPAEAVDGADPDALVPTRAVALVLET 60
Query 59 SAAELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTV-- 116
+AAELDC D GLRLA QG ILGP+AV +N+ TL L+ +YLYVHSPAL +
Sbjct 61 AAAELDCSDLGLRLAERQGPEILGPLAVAVQNSPTLGAALDCASKYLYVHSPALRIAAVP 120
Query 117 --SSTTARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQL 174
+ V +G TE P +L + R+I LL G R H L
Sbjct 121 DPEHVAGVTGVEYGS--TER---LPPHVADLGVGVLHRIIGLLSGGGYGLRSVHLPHPAL 175
Query 175 GTDAAYREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATL 234
++ YRE G VRF R V L RP+D D + IA +YLE+ + D +
Sbjct 176 ASERRYREFFGAEVRFDRPTAVLRVPADLPRRPLD-GDQAVRDIAIEYLETHFDRPDRRV 234
Query 235 SERVVGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYL 294
++RV R L TG A+A L +HPRTLQR LAAE +++ RR A R +
Sbjct 235 TDRVRTAVDRSLGTGPVRIGAVARLLRVHPRTLQRHLAAEDTTFEQIVDDARRDTAERLV 294
Query 295 AQPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGV 337
+ L +QIA ++G +EQSAL R+ RRWFG+ PR R G V
Sbjct 295 TRSDLPFTQIAAMVGLAEQSALTRASRRWFGVPPRTLRKAGPV 337
>gi|73538979|ref|YP_299346.1| AraC family transcriptional regulator [Ralstonia eutropha JMP134]
gi|72122316|gb|AAZ64502.1| transcriptional regulator, AraC family [Ralstonia eutropha JMP134]
Length=339
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/334 (34%), Positives = 171/334 (52%), Gaps = 2/334 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ +L+RA+ L GY LMR+LG DP P L+R+ + G +DA +SL V +LEASA +
Sbjct 1 MDALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQ 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
D GLRL+R Q + +LGP+++ +NA T+ ++ R+ +VHSP L V +
Sbjct 61 TRTGDLGLRLSRHQSIDVLGPLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEF 120
Query 123 SN--VRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
+N E+ P Q +L +A+ RLL G + R S H + + Y
Sbjct 121 ANDAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGDRYLLRAVSVPHTPVVPVSTY 180
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
G V + + + D +RIA Y+ + ++S+RV
Sbjct 181 ERFFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQ 240
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
+ R+ L T S +AD L +HPRT+QRRLAAE + + RR A RYL + L
Sbjct 241 VLRQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLP 300
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAY 334
L QI++LLG QSAL+R+CR+W+G+ P R +
Sbjct 301 LGQISLLLGLPAQSALSRACRQWYGVPPSALRKH 334
>gi|119468607|ref|ZP_01611659.1| putative transcriptional regulator, AraC family protein [Alteromonadales
bacterium TW-7]
gi|119447663|gb|EAW28929.1| putative transcriptional regulator, AraC family protein [Alteromonadales
bacterium TW-7]
Length=343
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/338 (32%), Positives = 171/338 (51%), Gaps = 5/338 (1%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ + I+AT+L G L++ LGAD + + + + E ++ + + +LE A
Sbjct 1 MKNFIKATSLQGIDSLVKSLGADISQIMTQLGLNICFNNLEQQYLPYSTYAELLEHCAHS 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
L+CP FGL+LA Q ILGP+A+ A+++ L L + +YL++H+PAL+LT+ A
Sbjct 61 LNCPSFGLQLANKQSFDILGPIAIAAKSSTNLGDALNWVIKYLHLHTPALSLTIHPLEAD 120
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
+ +++ +P Q EL++ A +I+ + + + QL AY
Sbjct 121 KTLFLSFQINLNPLPKTTQVLELTIGLAIGVIKKISNNTCKPQAVFLPQKQLTNTRAYNT 180
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRI--ATKYLESQYLPSDATLSERVVG 240
GC V R G + I A P+ ++ A ++L +Q + +L +V
Sbjct 181 YFGCKVTHNRNSAGIVILKTDLALSI--AQPQYDKVPAALQFL-AQSEQQNQSLPTQVSA 237
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
L R +LP QC+ E IA L MHPRTL R L L + RR+ AA YL Q
Sbjct 238 LIRPMLPIYQCTNETIAAALGMHPRTLHRELNKHNTSFVKLKDSTRRSLAAHYLTQNHYS 297
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYGGVS 338
+S I+ LLGY EQ+ L+ S +RWFG +PR YRA ++
Sbjct 298 ISTISELLGYQEQATLSASVKRWFGYSPRAYRAKKMIN 335
>gi|333990278|ref|YP_004522892.1| AraC/XylS family transcriptional regulator [Mycobacterium sp.
JDM601]
gi|333486246|gb|AEF35638.1| AraC/XylS family transcriptional regulator [Mycobacterium sp.
JDM601]
Length=332
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/329 (36%), Positives = 169/329 (52%), Gaps = 4/329 (1%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
S++R T L GY +L+ ELG DP L +P G + F+ + +E +A +D
Sbjct 2 SVVRGTALSGYPELVAELGGDPAALLAAAGVPSGAAGTHELFVPYRAVILAIEGAANAVD 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSN 124
CPDFG RLA Q + I GP+ V AR AAT+ GG + R++ +SPA++ ++ S
Sbjct 62 CPDFGRRLALRQDIDIFGPLGVAARTAATVGGGFSIVERFMSAYSPAISARITPGAKSSE 121
Query 125 VRFGYEV-TEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREA 183
+ ++V E P+P Q ELS+ + ++R++ H L Y
Sbjct 122 SFYAFDVLLERSPPHP-QTTELSLGVSLGIMRMMFDSPYAPLSVHLPHEPLTPVREYLAY 180
Query 184 LGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLAR 243
GC F + GF RP+ H D + + YL + S ++ V +AR
Sbjct 181 FGCRPYFAQPVAGFTFRTADLNRPL-HRDDQAHQAMVHYLRAMTDESPG-IAASVRVMAR 238
Query 244 RLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQ 303
+LLPTG S E IAD+L +HP+ L RRLAAE L++ RR A RYL + LS
Sbjct 239 QLLPTGTVSLELIADELGLHPKALHRRLAAEQTTFAALVDGVRRDAADRYLRDTDISLSH 298
Query 304 IAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
+A LGY+EQS L+RSCRRWFG + YR
Sbjct 299 LARELGYAEQSVLSRSCRRWFGCSASSYR 327
>gi|121639652|ref|YP_979876.1| AraC/XylS family transcriptional regulator [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224992148|ref|YP_002646837.1| transcriptional regulatory protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|121495300|emb|CAL73786.1| Transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224775263|dbj|BAH28069.1| transcriptional regulatory protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341603673|emb|CCC66354.1| Transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium bovis BCG str. Moreau RDJ]
Length=353
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/333 (37%), Positives = 172/333 (52%), Gaps = 13/333 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A
Sbjct 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 58 AVTATMDFGRRLAQRQGIKILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117
Query 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
RS + + + EP YP Q EL++ A +IRLL G H L +A
Sbjct 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
Y + GC F GF + RP++ D R+ YL S P + E V
Sbjct 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+ +A LGY+EQS L RSC+RWFG P YR
Sbjct 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326
>gi|15610872|ref|NP_218253.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis H37Rv]
gi|15843357|ref|NP_338394.1| AraC family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31794908|ref|NP_857401.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
bovis AF2122/97]
38 more sequence titles
gi|148663602|ref|YP_001285125.1| AraC family transcription regulator [Mycobacterium tuberculosis
H37Ra]
gi|148824941|ref|YP_001289695.1| AraC family transcriptional regulator [Mycobacterium tuberculosis
F11]
gi|167970894|ref|ZP_02553171.1| transcriptional regulatory protein, araC/xylS-family [Mycobacterium
tuberculosis H37Ra]
gi|253800783|ref|YP_003033784.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
KZN 1435]
gi|254233229|ref|ZP_04926555.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis C]
gi|254366281|ref|ZP_04982325.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|254552850|ref|ZP_05143297.1| transcriptional regulator, araC/xylS-family protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|289445337|ref|ZP_06435081.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
CPHL_A]
gi|289556001|ref|ZP_06445211.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
KZN 605]
gi|289572387|ref|ZP_06452614.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
K85]
gi|289747576|ref|ZP_06506954.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis 02_1987]
gi|289759898|ref|ZP_06519276.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|289763917|ref|ZP_06523295.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis GM 1503]
gi|294995351|ref|ZP_06801042.1| transcriptional regulator, araC/xylS-family protein [Mycobacterium
tuberculosis 210]
gi|297636417|ref|ZP_06954197.1| transcriptional regulator, araC/xylS-family protein [Mycobacterium
tuberculosis KZN 4207]
gi|297733411|ref|ZP_06962529.1| transcriptional regulator, araC/xylS-family protein [Mycobacterium
tuberculosis KZN R506]
gi|298527213|ref|ZP_07014622.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis 94_M4241A]
gi|313660742|ref|ZP_07817622.1| transcriptional regulator, araC/xylS-family protein [Mycobacterium
tuberculosis KZN V2475]
gi|339633727|ref|YP_004725369.1| transcriptional regulator (probably AraC/XylS-family) [Mycobacterium
africanum GM041182]
gi|2960160|emb|CAA18058.1| TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARAC/XYLS-FAMILY)
[Mycobacterium tuberculosis H37Rv]
gi|13883721|gb|AAK48208.1| transcriptional regulator, AraC family [Mycobacterium tuberculosis
CDC1551]
gi|31620506|emb|CAD95949.1| TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARAC/XYLS-FAMILY)
[Mycobacterium bovis AF2122/97]
gi|124603022|gb|EAY61297.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis C]
gi|134151793|gb|EBA43838.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis str. Haarlem]
gi|148507754|gb|ABQ75563.1| AraC/XylS-family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148723468|gb|ABR08093.1| transcriptional regulatory protein, araC/xylS-family [Mycobacterium
tuberculosis F11]
gi|253322286|gb|ACT26889.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
KZN 1435]
gi|289418295|gb|EFD15496.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
CPHL_A]
gi|289440633|gb|EFD23126.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
KZN 605]
gi|289536818|gb|EFD41396.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
K85]
gi|289688104|gb|EFD55592.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis 02_1987]
gi|289711423|gb|EFD75439.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis GM 1503]
gi|289715462|gb|EFD79474.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|298497007|gb|EFI32301.1| transcriptional regulatory protein (probably araC/xylS-family)
[Mycobacterium tuberculosis 94_M4241A]
gi|326905575|gb|EGE52508.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
W-148]
gi|328460510|gb|AEB05933.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
KZN 4207]
gi|339333083|emb|CCC28814.1| transcriptional regulatory protein (probably AraC/XylS-family)
[Mycobacterium africanum GM041182]
gi|344221574|gb|AEN02205.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis CTRI-2]
Length=353
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/333 (37%), Positives = 172/333 (52%), Gaps = 13/333 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A
Sbjct 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117
Query 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
RS + + + EP YP Q EL++ A +IRLL G H L +A
Sbjct 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
Y + GC F GF + RP++ D R+ YL S P + E V
Sbjct 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+ +A LGY+EQS L RSC+RWFG P YR
Sbjct 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326
>gi|289755867|ref|ZP_06515245.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis EAS054]
gi|289696454|gb|EFD63883.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis EAS054]
Length=353
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/333 (37%), Positives = 172/333 (52%), Gaps = 13/333 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A
Sbjct 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117
Query 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
RS + + + EP YP Q EL++ A +IRLL G H L +A
Sbjct 118 GQRSFIALEFLLDEPA-SYP-QTMELALRVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
Y + GC F GF + RP++ D R+ YL S P + E V
Sbjct 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+ +A LGY+EQS L RSC+RWFG P YR
Sbjct 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326
>gi|289571981|ref|ZP_06452208.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
T17]
gi|289748256|ref|ZP_06507634.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
T92]
gi|289545735|gb|EFD49383.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
T17]
gi|289688843|gb|EFD56272.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
T92]
Length=353
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/333 (37%), Positives = 173/333 (52%), Gaps = 13/333 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A
Sbjct 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117
Query 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
RS + + + EP YP Q EL++ A +IRLL G H L +A
Sbjct 118 GQRSFIALEFLLDEPA-SYP-QTMELALRVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
Y + GC F GF + RP++ D R+ YL S P + E V
Sbjct 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+++A LGY+EQS L RSC+RWFG P YR
Sbjct 294 GLTRLARELGYAEQSVLTRSCKRWFGTGPAAYR 326
>gi|339300146|gb|AEJ52256.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis CCDC5180]
Length=351
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/332 (37%), Positives = 171/332 (52%), Gaps = 13/332 (3%)
Query 6 LIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASAA 61
++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++AA
Sbjct 1 MVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAAA 56
Query 62 ELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTA 121
DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 57 VTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAG 116
Query 122 -RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
RS + + + EP YP Q EL++ A +IRLL G H L +A Y
Sbjct 117 QRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLTVHLPHDPLTPEAFY 174
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
+ GC F GF + RP++ D R+ YL S P + E V
Sbjct 175 LQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVRT 232
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 233 IVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIG 292
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+ +A LGY+EQS L RSC+RWFG P YR
Sbjct 293 LTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 324
>gi|308232552|ref|ZP_07416433.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu001]
gi|308369217|ref|ZP_07416965.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu002]
gi|308371439|ref|ZP_07424972.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu003]
23 more sequence titles
gi|308372642|ref|ZP_07429339.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu004]
gi|308372726|ref|ZP_07429638.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu005]
gi|308373804|ref|ZP_07433703.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu006]
gi|308374969|ref|ZP_07442250.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu007]
gi|308376212|ref|ZP_07438040.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu008]
gi|308378456|ref|ZP_07482640.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu009]
gi|308379605|ref|ZP_07486874.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu010]
gi|308380792|ref|ZP_07491091.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu011]
gi|308406231|ref|ZP_07495646.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu012]
gi|308213621|gb|EFO73020.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu001]
gi|308328354|gb|EFP17205.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu002]
gi|308328757|gb|EFP17608.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu003]
gi|308332601|gb|EFP21452.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu004]
gi|308340092|gb|EFP28943.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu005]
gi|308344081|gb|EFP32932.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu006]
gi|308347880|gb|EFP36731.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu007]
gi|308351868|gb|EFP40719.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu008]
gi|308352531|gb|EFP41382.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu009]
gi|308356484|gb|EFP45335.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu010]
gi|308360430|gb|EFP49281.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu011]
gi|308364017|gb|EFP52868.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
SUMu012]
gi|323717600|gb|EGB26802.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|339296546|gb|AEJ48657.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium
tuberculosis CCDC5079]
Length=351
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/332 (37%), Positives = 171/332 (52%), Gaps = 13/332 (3%)
Query 6 LIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASAA 61
++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++AA
Sbjct 1 MVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAAA 56
Query 62 ELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTA 121
DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 57 VTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAG 116
Query 122 -RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
RS + + + EP YP Q EL++ A +IRLL G H L +A Y
Sbjct 117 QRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFY 174
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
+ GC F GF + RP++ D R+ YL S P + E V
Sbjct 175 LQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVRT 232
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 233 IVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIG 292
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+ +A LGY+EQS L RSC+RWFG P YR
Sbjct 293 LTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 324
>gi|240172318|ref|ZP_04750977.1| AraC family transcriptional regulator [Mycobacterium kansasii
ATCC 12478]
Length=338
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/329 (37%), Positives = 168/329 (52%), Gaps = 4/329 (1%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
S++R T L Y L+ ELG DP LR I DAF+ +R +E++A
Sbjct 2 SVVRGTGLSNYPKLVAELGGDPASLLRAVGIRDRDVGNYDAFIPFRAAIRAMESAAEATA 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSN 124
PDFG RLAR Q + ILGPV V AR AAT+ L ++ +SP + + ++S+
Sbjct 62 TPDFGRRLARRQSIEILGPVGVAARTAATVADALSIFNTFMSAYSPVIRIQITSSADAQR 121
Query 125 VRFGYE-VTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREA 183
G + + + IP P Q EL++ + ++RLL G H + A Y +
Sbjct 122 SFIGIQFLLDEAIPCP-QTLELALGVSLGVLRLLMGADYAPLAVHVSHDPVTAPADYAQY 180
Query 184 LGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLAR 243
GCT F GF V RP++ D R YL S P A + E V + R
Sbjct 181 FGCTPYFAERRSGFTVRTADLSRPLNR-DDVAHRAVVDYLSS-ITPLGAGIVESVRAIVR 238
Query 244 RLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQ 303
+LLPTG + + +A+Q +HP+TLQRRLA EG L+++ R+ A RYL G+ LS
Sbjct 239 QLLPTGAATLDLVAEQFHLHPKTLQRRLAHEGTTFAVLVDQVRKDTADRYLRTTGISLSH 298
Query 304 IAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
+ LGY+EQS L RSC+RWFG P YR
Sbjct 299 LTTELGYAEQSVLTRSCKRWFGAGPAAYR 327
>gi|54023095|ref|YP_117337.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54014603|dbj|BAD55973.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=338
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/333 (38%), Positives = 169/333 (51%), Gaps = 3/333 (0%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
S+IR+ L G+ + ELG D F +P +D + +LE +A LD
Sbjct 2 SVIRSAGLRGFRATVAELGGDAEEFAAAVGLPVAALDADDLLVPDQAVAAVLELAAHRLD 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT--AR 122
PD GLR+AR Q L +LGP+A+ RN+ TL LE RYL+VH+ +L+L + R
Sbjct 62 RPDLGLRIARRQDLDMLGPLALAIRNSPTLAHVLECTSRYLFVHARSLSLEIEPDPHGER 121
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
+ Y V PG+P P+QG +L + R I+ L P+ R + AAY E
Sbjct 122 GVLALRYGV-RPGLPTPVQGTDLGLGFVHRAIQRLVAPRYGLRSVELPYRPSAPAAAYEE 180
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLA 242
G VR GR V LA RP+ D R+A +L Q + A + +V
Sbjct 181 FFGAPVRTGRPAALLRVPAELADRPLSGGDENLHRLALAFLAEQATETGAATAPKVRAAV 240
Query 243 RRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLS 302
++LL T +A L MHPRTLQR LAAEG +++ RR QA RYL + L+
Sbjct 241 QQLLGTTPPEIGVVARLLAMHPRTLQRSLAAEGTGFAAILDDVRRQQARRYLTTTTMPLA 300
Query 303 QIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYG 335
Q+A LLG +EQ+ L R CRRW+G TP Q R G
Sbjct 301 QVASLLGLAEQATLTRCCRRWWGRTPTQVRRAG 333
>gi|332534194|ref|ZP_08410041.1| putative transcriptional regulator, AraC family [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036360|gb|EGI72830.1| putative transcriptional regulator, AraC family [Pseudoalteromonas
haloplanktis ANT/505]
Length=336
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/338 (33%), Positives = 170/338 (51%), Gaps = 14/338 (4%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPP-GIEHQEDAFMSLAGFVRMLEASAA 61
+ SLIRAT+L G L+ E G DP ++ +I ++ ++ ++ + +LE A
Sbjct 1 MSSLIRATSLQGIDTLISEFGGDPHEIMQSCNISNVDFKNLDNQYLPYRDYAELLEYCAC 60
Query 62 ELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTA 121
+ +C FGL+LA Q ILG +A+ A+++ L L + +YLY+HSPAL+L
Sbjct 61 KFNCSSFGLKLASRQNFDILGHIAIAAKSSTNLGDALNWVIKYLYLHSPALSLNSHPLEN 120
Query 122 RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDA-AY 180
++ +E+ +P+ Q EL++ A +I+ L + + + F +L T+ AY
Sbjct 121 DKSLFLSFEINLKPLPHINQVIELTIGLALAVIKKLSNNRCKP-INIFLPKKLSTNTRAY 179
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYL-----ESQYLPSDATLS 235
LGC V R G + +DH + A +L +Q LP+
Sbjct 180 NTYLGCNVIEHRNSAGIVISKSDLTLELDHPKLNKVQAALNFLAKNKEHTQPLPN----- 234
Query 236 ERVVGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLA 295
+V L R +LP QCS + I+ L MHPRTL R L L + RRA AA YLA
Sbjct 235 -QVSALIRPMLPIYQCSNQTISAALGMHPRTLHRELIKHNTSFVKLKDATRRALAAHYLA 293
Query 296 QPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
Q +S I+ LLGY EQ+ L+ + +RWFG +PR YR
Sbjct 294 QNQFTISTISELLGYQEQATLSVNVKRWFGCSPRAYRT 331
>gi|315123262|ref|YP_004065268.1| AraC family transcriptional regulator [Pseudoalteromonas sp.
SM9913]
gi|315017022|gb|ADT70359.1| AraC family transcriptional regulator [Pseudoalteromonas sp.
SM9913]
Length=333
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/337 (33%), Positives = 165/337 (49%), Gaps = 13/337 (3%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ SLI+AT+L G L+ ELG D +R I + E ++ + +LE A
Sbjct 1 MSSLIKATSLQGIDTLITELGGDTANIMRHCAIEVTLNSLETQSLTYRHYAELLEYCAHS 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
L+CP FGL+LA Q ILG +A+ A++ L L + +YL++H+PAL LT +
Sbjct 61 LNCPSFGLKLASKQSFDILGHIAIAAKSGTDLGEALTWVIKYLHLHTPALNLTTHTLEDD 120
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDA-AYR 181
N+ +E+ +P Q EL++A A ++ + Q + + F +L + AY
Sbjct 121 QNIFLSFEIKLKPLPVINQVIELTIALALATLKKVSQNQCKP-IKVFLPQKLDANLRAYH 179
Query 182 EALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYL-----ESQYLPSDATLSE 236
+ GC V R G + P++ +D + A +L +Q LPS
Sbjct 180 QHFGCNVIEHRNSAGILIAKNDLLLPLNVSDQHKVQAALNFLAANNAHTQSLPS------ 233
Query 237 RVVGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQ 296
+V L R +LP QCS + IA L++HPRTL R L L + RRA YL Q
Sbjct 234 QVSALIRPMLPLFQCSNQTIATALNLHPRTLHRELKKHNTSFVKLKDATRRALCEHYLMQ 293
Query 297 PGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
+S I+ LLGY EQ+ L+ S +RWF + R +RA
Sbjct 294 NQFSISHISELLGYQEQATLSASVKRWFNCSARAFRA 330
>gi|183985244|ref|YP_001853535.1| AraC/XylS family transcriptional regulator [Mycobacterium marinum
M]
gi|183178570|gb|ACC43680.1| transcriptional regulatory protein (probably AraC/XylS-family)
[Mycobacterium marinum M]
Length=339
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/335 (38%), Positives = 170/335 (51%), Gaps = 14/335 (4%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y +L+ ELG DP LR G+ Q+ DAF+ + +R +E +A
Sbjct 2 SVVRGTGLSNYPNLVSELGGDPAALLR----AAGVREQDVGNYDAFIPVRAVIRAIETAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVS--S 118
A DFG +LA+ QG+ ILGPV V AR AAT+ L ++ +SPA+ + ++ +
Sbjct 58 AATGTHDFGRQLAQRQGIEILGPVGVAARTAATVADALMIFHTFMAAYSPAIHIEITPLA 117
Query 119 TTARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDA 178
T RS V +P IP P EL++ + + RLL G H L
Sbjct 118 HTQRSFVAIEIVPDDP-IPCP-HTLELALGVSLGVFRLLMGADYTPLAVHLPHDPLTPPT 175
Query 179 AYREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERV 238
Y CT F GF V RP+ H D R YL S P A + E V
Sbjct 176 TYVRYFECTPHFAERRSGFTVRSTDLVRPL-HRDELAHRAVVDYL-SSITPLGAGIVESV 233
Query 239 VGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPG 298
+AR+LLPTG + E +A Q +HP+TLQRRLA E LI+ R+ A RYL
Sbjct 234 RTMARQLLPTGAATLEVVAAQFHLHPKTLQRRLADESTTFAALIDEVRKETADRYLRTTA 293
Query 299 LYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
+ LS +A LGY+EQS L RSC+RWFG+ P YRA
Sbjct 294 MSLSHLARELGYAEQSVLTRSCKRWFGIGPAAYRA 328
>gi|118619491|ref|YP_907823.1| AraC/XylS family transcriptional regulator [Mycobacterium ulcerans
Agy99]
gi|118571601|gb|ABL06352.1| transcriptional regulatory protein (probably AraC/XylS-family)
[Mycobacterium ulcerans Agy99]
Length=339
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/335 (38%), Positives = 170/335 (51%), Gaps = 14/335 (4%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y +L+ ELG DP LR G+ Q+ DAF+ + +R +E +A
Sbjct 2 SVVRGTGLSNYPNLVSELGGDPAALLR----AAGVREQDVGNYDAFIPVRAVIRAIETAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVS--S 118
A DFG +LA+ QG+ ILGPV V AR AAT+ L ++ +SPA+ + ++ +
Sbjct 58 AATGTHDFGRQLAQRQGIEILGPVGVAARTAATVADALMIFHTFMAAYSPAIHIEITPLA 117
Query 119 TTARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDA 178
T RS V +P IP P EL++ + + RLL G H L
Sbjct 118 RTQRSVVAIEIVPDDP-IPCP-HTLELALGVSLGVFRLLMGADYTPLAVHLPHDPLTPPT 175
Query 179 AYREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERV 238
Y CT F GF V RP+ H D R YL S P A + E V
Sbjct 176 TYVRYFECTPHFAERRSGFTVRSTDLVRPL-HRDELAHRAVVDYL-SSITPLGAGIVESV 233
Query 239 VGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPG 298
+AR+LLPTG + E +A Q +HP+TLQRRLA E LI+ R+ A RYL
Sbjct 234 RTMARQLLPTGATTLEVVAAQFHLHPKTLQRRLADESTTFAALIDEVRKETADRYLRTTA 293
Query 299 LYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
+ LS +A LGY+EQS L RSC+RWFG+ P YRA
Sbjct 294 MSLSHLARELGYAEQSVLTRSCKRWFGIGPAAYRA 328
>gi|78062048|ref|YP_371956.1| AraC family transcriptional regulator [Burkholderia sp. 383]
gi|77969933|gb|ABB11312.1| transcriptional regulator, AraC family [Burkholderia sp. 383]
Length=348
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/334 (33%), Positives = 169/334 (51%), Gaps = 3/334 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ ++IR+T + GY +LM LG DP+P LR+ +P + +DA + + ++++E SAA
Sbjct 1 MTAIIRSTGMKGYRELMTTLGVDPMPLLRKHKLPADLGDVDDATVPILSVMQLMEDSAAA 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTV--SSTT 120
PD GL+LA Q + ILGP+A+ +++A + + RYLYVHSPA L+V ST
Sbjct 61 AHRPDLGLQLAARQDIDILGPLAMAIQHSANVREAMTTASRYLYVHSPAAQLSVIEPSTL 120
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAY 180
+ E+ P P Q + + ++R R +F + AY
Sbjct 121 VQDAAEIRLELVVPRAPVCRQALDQCLGRMHHLVRSFAADNYRLLAVAFPYGNSADPGAY 180
Query 181 REALG-CTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
G + + G V + G +++ + K IA +YL+ Y ++ ERV
Sbjct 181 ARFFGQARIYTEQEHAGLHVSPQTLGSRLENVNASLKNIALEYLQRHYGDPGLSMVERVR 240
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
L S AIA+ L +HPRT+QR+LA EG + + R+ A RYL Q +
Sbjct 241 RALHCTLGATGGSKSAIAELLFVHPRTMQRKLADEGATFEGVRDEVRQEIALRYLQQTTI 300
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
L+Q+ LLG+S+QS L +S RWFGM P + RA
Sbjct 301 PLAQLTSLLGFSDQSVLTQSSIRWFGMPPSKIRA 334
>gi|77362173|ref|YP_341747.1| AraC family transcriptional regulator [Pseudoalteromonas haloplanktis
TAC125]
gi|76877084|emb|CAI89301.1| putative transcriptional regulator, AraC family [Pseudoalteromonas
haloplanktis TAC125]
Length=332
Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/333 (33%), Positives = 163/333 (49%), Gaps = 5/333 (1%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ SLIRAT+L G L+ E GA+ ++ +I E+ ++S + +LE A +
Sbjct 1 MSSLIRATSLQGIDTLILEFGANVTAIMQACNINVDFTQLENQYVSYRCYAALLEYCAQQ 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
+CP FGL+LA Q ILG +++ A++ L L+ + +YL++HSPAL LT
Sbjct 61 FNCPSFGLKLASRQSFDILGYISIAAKSGTYLSDALDWVVKYLHLHSPALRLTAHPLEDD 120
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
++ +E+ +P Q EL++ A I+ L Q + + AY
Sbjct 121 KSLFLSFEINLNPLPNINQVTELTIGLAMGAIKKLSNNQCKPITVFLPQKLTTSKYAYNS 180
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYL--ESQYLPSDATLSERVVG 240
C V R G + + ++ + A +L SQY ++ L +V
Sbjct 181 YFDCKVIEHRNSAGIVIAKQDLSIALEQGELINVEAARNFLAKNSQY---NSPLPIQVSA 237
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
L R +LP QCS IA L+MHPRTL R+LA L + RRA A YL Q L
Sbjct 238 LMRPMLPIYQCSNHTIAAALNMHPRTLHRKLAKHNTSFVKLKDATRRALAQHYLTQGQLT 297
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
+S I+ LLGY EQ+ L+ S +RWFG +PR R+
Sbjct 298 ISTISELLGYQEQATLSTSVKRWFGCSPRVMRS 330
>gi|157369419|ref|YP_001477408.1| AraC family transcriptional regulator [Serratia proteamaculans
568]
gi|157321183|gb|ABV40280.1| transcriptional regulator, AraC family [Serratia proteamaculans
568]
Length=345
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/335 (31%), Positives = 168/335 (51%), Gaps = 3/335 (0%)
Query 2 ELGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAA 61
++ ++I +T GY+ LM ELG DPLP LR+ +P + +DA + + ++++E SA
Sbjct 4 DMATMINSTGFKGYSGLMNELGVDPLPLLRKHGLPVDLGEVDDAVVPIIPVMQLMEESAL 63
Query 62 ELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTV--SST 119
DFGL LA QG+ I+GP+A+ +++ + ++ R+LYVHSPA+ L++ S
Sbjct 64 VTQHLDFGLTLAARQGIDIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIIDPSP 123
Query 120 TARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
V E P P Q E ++ +++ +F + + +
Sbjct 124 LIPGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKSFAKDNYHLLAITFPYGDVSNFSD 183
Query 180 YREALG-CTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERV 238
YR G V + G + + +D+ K IA YL+ Y + +++ RV
Sbjct 184 YRRFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMTSRV 243
Query 239 VGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPG 298
+ S +IA+ L +HPRT+QR+LA E + + R+ A R+L Q
Sbjct 244 RRALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLTQTR 303
Query 299 LYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
+ L+Q+A +LG+S+QS L S RRWFGM+P + RA
Sbjct 304 IPLAQLAAILGFSDQSVLTTSSRRWFGMSPSKVRA 338
>gi|302556064|ref|ZP_07308406.1| transcriptional regulator [Streptomyces viridochromogenes DSM
40736]
gi|302473682|gb|EFL36775.1| transcriptional regulator [Streptomyces viridochromogenes DSM
40736]
Length=337
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/335 (36%), Positives = 167/335 (50%), Gaps = 11/335 (3%)
Query 7 IRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDCP 66
+R+ L G + ELG D R P G+ ++ + +LE +A LDCP
Sbjct 4 VRSAALRGVRRTVEELGGDADALARSAGAPRGVLDDDELLVQDTTVAVLLETAARRLDCP 63
Query 67 DFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSST-----TA 121
D GLR+A Q L +LGP+AV +N+AT+ LE RYL+VH L + + + TA
Sbjct 64 DLGLRVALEQDLSMLGPLAVAVQNSATVAEALECASRYLFVHDRNLRVALGTDPHGDRTA 123
Query 122 RSNVRFGYEVTEPGIPYPLQGYELSMANAAR-MIRLLGGPQARARVFSFRHAQLGTDAAY 180
+ VR+GY PG P Q E+ + R +I LL GP R H + A Y
Sbjct 124 VA-VRYGYP---PGARVPPQSVEMGLLFLHRVLISLLDGPYG-LRTVELPHHAVAARARY 178
Query 181 REALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVG 240
E G V F + V L GRP+ D T+R+A YLE+Q + ++ RV
Sbjct 179 EELFGSQVNFAQPQALLRVASDLPGRPVQGGDQLTRRVALAYLEAQPSVTGNAMTRRVRT 238
Query 241 LARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLY 300
L ++ L TG + A L M PR+LQR L+A G +++ RR +AA L Q L
Sbjct 239 LLKQSLGTGPGTLAFAARTLGMSPRSLQRHLSAAGTTFAAVLDDVRRERAADLLIQSDLP 298
Query 301 LSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYG 335
L+Q+A +G SE + L+R RRW+G T R R +G
Sbjct 299 LAQVARNIGLSEAAVLSRYARRWWGTTARAVRDHG 333
>gi|134100828|ref|YP_001106489.1| putative transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291008659|ref|ZP_06566632.1| putative transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133913451|emb|CAM03564.1| putative transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=336
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/337 (36%), Positives = 173/337 (52%), Gaps = 12/337 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
S+IR+ L G+ + ELG R +P +D + +LE +AAEL
Sbjct 2 SMIRSAGLRGFRATVAELGGRAEDHARAAGLPVAALDVDDLLVPDHVLAEVLEIAAAELG 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT--AR 122
CPD GLR+A Q LG+LGP+A+ +N+ ++ LE RYL+VH+ +L+L + AR
Sbjct 62 CPDLGLRVAARQDLGMLGPLALAIQNSPSVGDALECTSRYLFVHARSLSLVLEDDPHGAR 121
Query 123 --SNVRFGYEVTEPGIPYPLQGYELSMANAARMIR-LLGGPQARARVFSFRHAQLGTDAA 179
+ +R+G PG P +Q +L++ R I L+ GP R H A
Sbjct 122 GVAALRYGLP---PGAPIAVQATDLALGFLHRAIEFLVSGPYG-LRTVELPHTPRSLRA- 176
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATL-SERV 238
+ E G VR G + + LA RP+ +D +++A +L Q P +ATL + RV
Sbjct 177 HEEFFGVPVRTGSSAPMLRLPRSLAARPLTGSDERVRQLALGFLAEQA-PGEATLLAPRV 235
Query 239 VGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPG 298
+ + L T +A ++MHPRT+QRRLA E +++ RR A RYL
Sbjct 236 RAVVAQSLGTASPEIGVVAGLVNMHPRTMQRRLARERTSFARILDDVRREAARRYLTTTD 295
Query 299 LYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYG 335
+ +SQ+ LLG SEQSAL+R CRRW+G TP R G
Sbjct 296 MPMSQVTGLLGLSEQSALSRCCRRWWGSTPSAVRRNG 332
>gi|299532411|ref|ZP_07045803.1| helix-turn-helix domain-containing protein [Comamonas testosteroni
S44]
gi|298719649|gb|EFI60614.1| helix-turn-helix domain-containing protein [Comamonas testosteroni
S44]
Length=345
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/335 (34%), Positives = 169/335 (51%), Gaps = 18/335 (5%)
Query 7 IRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDCP 66
+RA +L G+ +L+R G DP LR + P + ++ +E +A L
Sbjct 14 VRAASLAGFEELVRAQGGDPAAILRACGLVPEDLADPERYLPSHAVALAIEEAACVLGVQ 73
Query 67 DFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSNVR 126
DFGLRL QG+ LG + ++ ++A T+ G+ G+Y++ H+P TL+ + A
Sbjct 74 DFGLRLCAQQGVETLGLLGLVIQSAPTVREGMMQGGKYVHFHNP--TLSYRTFMAPDE-- 129
Query 127 FGYEVTE-----PGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYR 181
G E E P + QG E+ +A R+I +L R RHA +G+ A YR
Sbjct 130 -GLECVEVLSRLPSQAHMPQGTEICVAYMCRLIHVLSEGALRPAAIHLRHAPVGSSAQYR 188
Query 182 EALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPS----DATLSER 237
LG RF ++ G VD +P+ P R+ +++E L + D ++++
Sbjct 189 RHLGQLPRFRSSFDGIAVDPLAWRQPM----PRHNRLLQQFVERFLLGAAPGRDTGVTDQ 244
Query 238 VVGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQP 297
V L+ G ++A L HPRTLQRRL AEG +L + R+ A+ LAQP
Sbjct 245 VRNALANLVRMGMADLPSVARALSQHPRTLQRRLQAEGAAFEELRDSARKTWVAQLLAQP 304
Query 298 GLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L L IA LLGYS+Q+ L R+C+RWFG +PRQ R
Sbjct 305 DLSLGHIAQLLGYSDQAVLTRACQRWFGQSPRQLR 339
>gi|221066563|ref|ZP_03542668.1| transcriptional regulator, AraC family [Comamonas testosteroni
KF-1]
gi|220711586|gb|EED66954.1| transcriptional regulator, AraC family [Comamonas testosteroni
KF-1]
Length=345
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/331 (33%), Positives = 166/331 (51%), Gaps = 10/331 (3%)
Query 7 IRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDCP 66
+RA +L G+ DL+R G DP L + P + ++ +E +A L
Sbjct 14 VRAASLAGFEDLVRTQGGDPAAILGACGLVPDDLADPERYLPSHAVALAIEEAACVLGVQ 73
Query 67 DFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSNVR 126
DFGLRL QG+ LG + ++ ++A T+ G+ G+Y++ H+P TL+ + A
Sbjct 74 DFGLRLCARQGVETLGLLGLVIQSAPTVREGMMQGGKYVHFHNP--TLSYRTFMAPDE-- 129
Query 127 FGYEVTE-----PGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYR 181
G E E P + QG E+ +A R+I +L R RHA +G+ A YR
Sbjct 130 -GLECVEVLSRLPPHAHMPQGTEICVAYMCRLIHVLSEGALRPSAIHLRHAPVGSSAQYR 188
Query 182 EALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGL 241
LG RFG ++ G +D +P+ + ++ ++L + +++++V
Sbjct 189 RHLGQLPRFGSSFDGIAIDPLAWRQPMPRHNRLLQQFVERFLLGAAPGRNTSVTDQVRSA 248
Query 242 ARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYL 301
L+ G + A L HPRTLQRRL AEG +L + RR A+ LAQP L L
Sbjct 249 LANLVRMGMADLPSAARALSQHPRTLQRRLQAEGAAFEELRDSARRTWVAQLLAQPELSL 308
Query 302 SQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
IA LLGYS+Q+ L R+C+RWFG +PRQ R
Sbjct 309 GHIAQLLGYSDQAVLTRACQRWFGQSPRQLR 339
>gi|73537684|ref|YP_298051.1| Fis-type helix-turn-helix domain-containing protein [Ralstonia
eutropha JMP134]
gi|72121021|gb|AAZ63207.1| Helix-turn-helix, Fis-type [Ralstonia eutropha JMP134]
Length=352
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/333 (33%), Positives = 164/333 (50%), Gaps = 2/333 (0%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+ L+R+ L YT++ R +G DPL L +P D +S R+LE SAA+
Sbjct 1 MSRLVRSATLSRYTEVARSVGLDPLRILAEVGLPRTCLDAGDNLVSANAVCRLLEMSAAD 60
Query 63 LDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTAR 122
D DFGLR+ + L +LGP+ + R++ TL L A+ RY+ +HS AL L V
Sbjct 61 SDAEDFGLRMGEGRQLSVLGPLGMAVRDSPTLRDALGAMVRYITLHSEALFLGVEEREGA 120
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
+R V G Q E+ + + RM++ L GP RAR H + A++
Sbjct 121 LVIRVSLIVEHAGSTR--QADEMVVVSLYRMLQELIGPGWRARRICLSHEAPRSLASHLR 178
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLA 242
G V FG + G + + A PE + A YL+S + +++E V +
Sbjct 179 VFGRAVDFGCDFNGIVCELKDMDAMPRAARPELAQYAHAYLDSLSARATLSMTENVRRMV 238
Query 243 RRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLS 302
LLP+G CS E +A QL + RT+ R+L EG +++ R A +YL +S
Sbjct 239 LSLLPSGNCSVERVASQLGVDRRTVHRKLLQEGASFSSILDEVRATLALQYLRHLERPVS 298
Query 303 QIAVLLGYSEQSALNRSCRRWFGMTPRQYRAYG 335
+AVLLG+S QSA +R R FG +P +R+ G
Sbjct 299 YVAVLLGFSMQSAFSRWFRDHFGCSPSAWRSEG 331
>gi|262279047|ref|ZP_06056832.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
gi|262259398|gb|EEY78131.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
Length=337
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/329 (28%), Positives = 165/329 (51%), Gaps = 3/329 (0%)
Query 7 IRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDCP 66
IRA +L GY MREL DP L ++ + + ++ +S +++LEASA+ +CP
Sbjct 4 IRANSLKGYISAMRELMIDPYSLLDQYKLTIDLLENDEILISQQTVIQLLEASASLTNCP 63
Query 67 DFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVS--STTARSN 124
D GLR++ Q + ILG ++++ +NA+++ ++ +LY++ +L+ + S +
Sbjct 64 DLGLRISTHQDISILGILSIMLQNASSMRKAIDYAAHFLYLYGQGFSLSYNDQSPLVYNA 123
Query 125 VRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREAL 184
+E + G P P Q +L + + + L G + SF + + + + Y++
Sbjct 124 FEVVFEASYNGPP-PRQSMDLCIGTIHQHAKCLFGKDYGLKAVSFPYDKSASLSMYQKVF 182
Query 185 GCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLARR 244
+ F + + + ++P ++I Y+ + + + S+RV R
Sbjct 183 NVPIYFNQERASLHISKDFLLLEPNGSNPLLRQIVEDYILRNFSMRNDSFSDRVKKTLRL 242
Query 245 LLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLSQI 304
L T Q S I++ L +HPRTLQRRL E ++ + R+ A Y+ Q + Q+
Sbjct 243 NLGTSQTSKINISNLLAIHPRTLQRRLKDENTTFEEIKDNLRKDLAIYYITQTTIPFYQL 302
Query 305 AVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
LLG+ EQSAL+R+ +RW+ +TP + R
Sbjct 303 TSLLGFPEQSALSRAIKRWYDLTPTELRV 331
>gi|169631076|ref|YP_001704725.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC
19977]
gi|169243043|emb|CAM64071.1| Probable transcriptional regulatory protein [Mycobacterium abscessus]
Length=334
Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 116/332 (35%), Positives = 164/332 (50%), Gaps = 7/332 (2%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
++IR + L Y +L+ ELG D L + P + F+SL R LEA+AA L+
Sbjct 2 AVIRGSALTNYHELVAELGGDGSRLLAGARVSPTDAGSYERFISLPNGARALEATAAALN 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSN 124
PDFG +LAR QG+ ILGPV + AR AAT+ + +++ + P ++ V+ +
Sbjct 62 APDFGRQLARRQGIEILGPVGLAARTAATVADAFAILEKFMGAYCPVISARVTDHRDPAL 121
Query 125 VRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREAL 184
RF +E P Q ELS+ R++ G R H L +AY+
Sbjct 122 CRFEFEYLLNPAPPQAQAVELSLGVTLRVLHHFLGAGYRPVSVHLPHQALTPASAYQRYF 181
Query 185 GCTVRFGRTWCGFEVDHRLAGRPIDHADPETK---RIATKYLESQYLPSDATLSERVVGL 241
GC F GF L + A P+ + A YL + S+ V L
Sbjct 182 GCPPFFCEPVGGFT----LRATDMQKALPKDNLAHQTAVDYLTGTHASRKPDSSQLVRIL 237
Query 242 ARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYL 301
R+LLPTG IA L +HP+TLQRRL AEG+ +L+++ RR A R L+ L L
Sbjct 238 IRQLLPTGAIGLGDIALHLGVHPKTLQRRLRAEGMTFAELVDQIRREAAERLLSDTDLSL 297
Query 302 SQIAVLLGYSEQSALNRSCRRWFGMTPRQYRA 333
++ LGY+EQS RSC+RWFG TP YR+
Sbjct 298 DHLSRQLGYAEQSVFTRSCKRWFGTTPSAYRS 329
>gi|121608263|ref|YP_996070.1| helix-turn-helix domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552903|gb|ABM57052.1| transcriptional regulator, AraC family [Verminephrobacter eiseniae
EF01-2]
Length=337
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/334 (35%), Positives = 167/334 (50%), Gaps = 12/334 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
SL+RA + G+ DL+R G DP LR + PG + ++ +EA+A L
Sbjct 2 SLVRAAGMAGFEDLVRRCGGDPAAILRTGGLAPGDLVNPERYLPTRCAALAIEAAARTLG 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSN 124
PDFGLRL Q + LG + ++ ++A T+ G+ +Y+ H+ TL + A
Sbjct 62 APDFGLRLCAIQSIDTLGLLGLVIQSAPTVREGMLQGAKYIRFHT--TTLGYRTFMAPGE 119
Query 125 VRFGYEVTEPGIPYP--LQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
EV + P P Q E+ +A R+ +L R V RHA +G+ A YR
Sbjct 120 GLECLEVFQRQQPLPDAPQFAEICVAYLCRLTDVLSAGALRPTVIYCRHAPVGSSAQYRR 179
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPS----DATLSERV 238
LG RF + G +D + +P+ P R+ +++E L S D + ++ V
Sbjct 180 HLGQLPRFNAAFDGIAIDPQAWRQPM----PRHNRLLQQFVERFLLGSSPGRDGSAADHV 235
Query 239 VGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPG 298
G+ L+ G A+A L PRTLQRRL AEG L E R+A A + L QP
Sbjct 236 RGVLDSLVRMGTTDLGAVARALGQSPRTLQRRLQAEGAVFEKLREAARQAWARQLLEQPD 295
Query 299 LYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L L IA LLGY++QS L R+C+RWFG++PRQ R
Sbjct 296 LSLGHIAQLLGYADQSVLTRACQRWFGVSPRQLR 329
>gi|70730891|ref|YP_260632.1| AraC family transcriptional regulator [Pseudomonas fluorescens
Pf-5]
gi|68345190|gb|AAY92796.1| transcriptional regulator, AraC family [Pseudomonas fluorescens
Pf-5]
Length=339
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/333 (34%), Positives = 158/333 (48%), Gaps = 13/333 (3%)
Query 6 LIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDC 65
+RA L G+T L+ E G D L R + + L ++LE ++ L
Sbjct 7 FVRAPALTGFTRLVSEHGGDAQALLARVGMTQAQLDDAHFSLPLEKVAQLLEITSQALSL 66
Query 66 PDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTL--TVSSTTARS 123
DFG RLA Q + ILGP+A+I +A+ L LE + RY+ HSP L L +V A
Sbjct 67 ADFGARLANLQDVSILGPLALIVLHASHLADALERVARYMPYHSPGLNLRLSVEGQYAAW 126
Query 124 NVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREA 183
+++ V+ G Q EL A +R + + +FRH AYR
Sbjct 127 HLQHDLSVSRLG---DRQLSELVHGIALAFLRRVTHHTGKQWQINFRHDSPLDAKAYRAL 183
Query 184 LGCTVRFGRTWCGFEVDHRLAGRPIDHADP----ETKRIATKYLESQYLPSDATLSERVV 239
GC VR + L P+ A P T+RI + ++S P D L +V
Sbjct 184 YGCRVRINQAENALLFPASLLSTPLASASPAMLETTERIVRRLIQSH--PLD--LGRQVE 239
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
L RLL TG C+ +A QL M LQRRL A+GLR ++I+ RR + L P +
Sbjct 240 ILVERLLVTGNCTLPVLAGQLGMPRHMLQRRLLAQGLRVEEIIDDLRRKRLESLLPHPQI 299
Query 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
L+++A LLGY + S+L R+C RWFG +P R
Sbjct 300 ALTEVAFLLGYGDPSSLTRACYRWFGQSPSACR 332
>gi|111020081|ref|YP_703053.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110819611|gb|ABG94895.1| probable transcriptional regulator [Rhodococcus jostii RHA1]
Length=337
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/330 (32%), Positives = 157/330 (48%), Gaps = 7/330 (2%)
Query 7 IRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDCP 66
+R+ L G ++ ELG D R +P ++ + MLE +A +L+C
Sbjct 4 VRSAGLRGVRHVIEELGGDADELATRAGLPLASLDSDELLVRDTAMAAMLELAAQKLNCS 63
Query 67 DFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTV----SSTTAR 122
D GLR+A Q L +LGP+A+ RN+ ++ L+ +YL+VH+ L++ +
Sbjct 64 DMGLRVALRQDLDLLGPLAIAVRNSRSIAEALDCTAKYLFVHARGLSVALVPDPRGVRGV 123
Query 123 SNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYRE 182
R+GY PG+ P Q ++ + R + L G R HA + A Y
Sbjct 124 VGCRYGYP---PGVSAPPQSIDMGLLFLHRTLLYLNGGNYGLRSVELPHAGVAPLARYES 180
Query 183 ALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVVGLA 242
G V F R V L+ +PI D T+ +A YLE P D T++ R L
Sbjct 181 LFGTHVTFNRDAAVLRVPQSLSRQPIAGGDRTTRHLALTYLEQHLSPPDLTVTTRAKTLL 240
Query 243 RRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYLS 302
R+ L T S EA A+ L M R+LQR L +EG +++ RR +AA L + L L+
Sbjct 241 RQSLGTSHLSIEATANLLAMSTRSLQRHLHSEGTNYGTILDDVRRERAATLLTETRLPLT 300
Query 303 QIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
QIA +G Q+ L+R RRW+ T RQ R
Sbjct 301 QIAATIGLDNQATLSRYARRWWNTTARQKR 330
>gi|319949118|ref|ZP_08023211.1| transcriptional regulator [Dietzia cinnamea P4]
gi|319437228|gb|EFV92255.1| transcriptional regulator [Dietzia cinnamea P4]
Length=342
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 119/341 (35%), Positives = 165/341 (49%), Gaps = 13/341 (3%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELD 64
+ IR+ L G ++ LG D RR +P G ++ + +LE +AAEL
Sbjct 2 AFIRSAGLRGVRAVVAGLGGDADDLARRSGLPHGALDSDEMLVEDLSIALLLETAAAELG 61
Query 65 CPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVS----STT 120
CPD GLR+A Q L +LGPVAV+ +NA T LE +YL+ HS ++ +TV
Sbjct 62 CPDLGLRVAEHQDLDMLGPVAVVVKNARTTTEALEMTSKYLFFHSRSIEITVVPDPRGEA 121
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIR-LLGGPQARARVFSFRHAQLGTDAA 179
VRFGY +P P Q +L + R +R +LGG V L TDA
Sbjct 122 DVLGVRFGYR--DPAQLIPPQAVDLVLLFLHRAMRTVLGGDYGLLSV--ELPGPLNTDAT 177
Query 180 YREAL-GCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSD-ATLSER 237
E+L G V V L GR I D +++A +YLE Q++P+D +L++R
Sbjct 178 QYESLFGAPVTPSTPSAVLRVPSDLLGREISGGDDAVQQLALRYLE-QHVPTDRRSLTDR 236
Query 238 VVGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQP 297
+ L G S IA L M PR+LQR LA EG + + RR AAR L
Sbjct 237 TRAALHQSLDAGASSLARIAGLLSMSPRSLQRGLAGEGTSFSAVRDEVRREVAARLLTTT 296
Query 298 GLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR-AYGGV 337
+ L QIA L + + ++ RRW+GMT R+ R GGV
Sbjct 297 EIPLYQIASALDLGDATTFSQYARRWWGMTAREVRHGRGGV 337
>gi|262368920|ref|ZP_06062249.1| HTH-type transcriptional regulator [Acinetobacter johnsonii SH046]
gi|262316598|gb|EEY97636.1| HTH-type transcriptional regulator [Acinetobacter johnsonii SH046]
Length=339
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/342 (29%), Positives = 160/342 (47%), Gaps = 23/342 (6%)
Query 3 LGSLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAE 62
+GS IRA +L G+ DL+R G +P+ L+ I P + D+F+ ++ +LE +A
Sbjct 1 MGSYIRAASLGGFEDLVRSYGVNPIEILKEIGILPALLRDPDSFIHYDHYLNLLEKAA-- 58
Query 63 LDCPD--FGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
L C D FGL+L Q + +G + V T+ L +Y+Y+H+ + VS
Sbjct 59 LACQDDCFGLKLGALQNISTIGLIGVYMSRQMTILEALSVAQKYVYLHAEGIVFHVSQHN 118
Query 121 ARSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHA--QLGTDA 178
A ++E P Q +L++ A +++ L GPQ A F+ Q G
Sbjct 119 ALLCKLNFVRLSEYNTDVP-QKSQLAICLVANILKDLIGPQWHAEKICFKQKAPQKGAQT 177
Query 179 AYREALGCTVRFGRTWCGFEVDHR--------LAGRPIDHADPETKRIATKYLESQYLPS 230
++ C V F E D L+ +P + + ++ + LE+Q
Sbjct 178 -FQAHFSCQVEF-------ETDEDALYFPASFLSYKPYNFNEDAINQLIVQQLETQSSTK 229
Query 231 DATLSERVVGLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQA 290
+ + R L+ TG CS E IA + MHP+ LQR L +G D++E R+ +A
Sbjct 230 TEDNTALIESSVRMLMATGDCSIENIALCMGMHPKKLQRALKMQGTSYRDILENVRKKEA 289
Query 291 ARYLAQPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
R L + L+ IA+ LGY+E S +R+ + WFG+ P + R
Sbjct 290 LRMLDAGNVNLTDIALQLGYAELSIFSRNFKSWFGVPPTELR 331
>gi|289441174|ref|ZP_06430918.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
T46]
gi|289414093|gb|EFD11333.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis
T46]
Length=335
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/306 (35%), Positives = 154/306 (51%), Gaps = 13/306 (4%)
Query 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60
S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A
Sbjct 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57
Query 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120
A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++
Sbjct 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117
Query 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179
RS + + + EP YP Q EL++ A +IRLL G H L +A
Sbjct 118 GQRSFIALEFLLDEPA-SYP-QTMELALRVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175
Query 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239
Y + GC F GF + RP++ D R+ YL S P + E V
Sbjct 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNRDD-VAHRVVVDYLSS-ITPLGEGIVESVR 233
Query 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299
+ R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+
Sbjct 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293
Query 300 YLSQIA 305
L+++A
Sbjct 294 GLTRLA 299
>gi|167034045|ref|YP_001669276.1| AraC family transcriptional regulator [Pseudomonas putida GB-1]
gi|166860533|gb|ABY98940.1| transcriptional regulator, AraC family [Pseudomonas putida GB-1]
Length=342
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/331 (32%), Positives = 161/331 (49%), Gaps = 13/331 (3%)
Query 7 IRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQEDAFMSLAGFVRMLEASAAELDCP 66
IR + L Y L+ E GA FL I P + + V++ E SA L P
Sbjct 9 IRGSALLQYDQLLVEHGAAQRDFLAPLHIAPDVVGNYGKHLPYLSLVQLFEGSAHALSLP 68
Query 67 DFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTTARSNVR 126
FGL LA QG ++GP+ +A +A T+ L A+ RY+ +SPA+ + ++ +
Sbjct 69 RFGLELALRQGSTLVGPLRHLANSAPTVGHALVAVIRYMRHYSPAIHFRLEHRAGQAMLF 128
Query 127 FGYEVTEPGIPYPLQG---YELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAAYREA 183
F + G+P Q E S+ A +I L G R R + RHA LG + Y
Sbjct 129 F-----DNGLPSSEQTPQIVEKSVMGARLLIGELRGAPLRPRAVTLRHAALGDASGYTRY 183
Query 184 LGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLS--ERVVGL 241
C V FG+ + + H D + I +LE+Q +P D+ L+ ER + +
Sbjct 184 FDCPVLFGQAHNSLVLGADVLQEACVHHDADLHAIVRHFLENQAVPCDSLLASVERKIQM 243
Query 242 ARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGLYL 301
LLP +C+ E +A L+M+ RTLQR LA++G+ ++ RR QA + L + L +
Sbjct 244 ---LLPAQRCTLEQVALALNMNSRTLQRHLASDGIEFEGYLDGIRRCQAQQMLRKTTLSV 300
Query 302 SQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
QIA LGY ++ R+ RWF +TP ++R
Sbjct 301 GQIANELGYRRTTSFCRAHLRWFDITPLEHR 331
Lambda K H
0.324 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 617544973600
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40