BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
21,062,489 sequences; 7,218,481,314 total letters
Query= Rv3098A Rv3098A PemK-like protein 3467606:3467926 forward MW:11826
Length=106
Score E
Sequences producing significant alignments: (Bits) Value
gi|167969705|ref|ZP_02551982.1| hypothetical protein MtubH3_1744... 213 2e-53
gi|289571304|ref|ZP_06451531.1| PemK protein [Mycobacterium tube... 211 4e-53
gi|336176869|ref|YP_004582244.1| PemK family protein [Frankia sy... 162 3e-38
gi|254383106|ref|ZP_04998460.1| PemK [Streptomyces sp. Mg1] >gi|... 155 2e-36
gi|408779997|ref|ZP_11191770.1| PemK protein [Mycobacterium kans... 151 4e-35
gi|269956542|ref|YP_003326331.1| transcriptional modulator of Ma... 148 4e-34
gi|379736703|ref|YP_005330209.1| putative PemK [Blastococcus sax... 135 3e-30
gi|379029435|dbj|BAL67168.1| pemK family protein [Mycobacterium ... 132 3e-29
gi|336119644|ref|YP_004574421.1| hypothetical protein MLP_40040 ... 125 3e-27
gi|54022736|ref|YP_116978.1| hypothetical protein nfa7690 [Nocar... 84.3 8e-15
gi|354613461|ref|ZP_09031380.1| transcriptional modulator of Maz... 83.2 2e-14
gi|397669792|ref|YP_006511327.1| PemK-like protein [Propionibact... 79.7 2e-13
gi|403727150|ref|ZP_10947484.1| hypothetical protein GORHZ_150_0... 78.6 4e-13
gi|333989313|ref|YP_004521927.1| PemK-like protein [Mycobacteriu... 78.2 5e-13
gi|111024791|ref|YP_707211.1| growth inhibitor [Rhodococcus jost... 77.0 1e-12
gi|392416793|ref|YP_006453398.1| growth inhibitor [Mycobacterium... 76.3 2e-12
gi|379734191|ref|YP_005327696.1| putative prevent-host-death pro... 74.7 6e-12
gi|119715391|ref|YP_922356.1| putative growth inhibitor [Nocardi... 74.3 9e-12
gi|389863277|ref|YP_006365517.1| prevent-host-death protein, put... 73.9 9e-12
gi|379734845|ref|YP_005328351.1| putative prevent-host-death pro... 73.6 1e-11
gi|183982959|ref|YP_001851250.1| PemK-like protein [Mycobacteriu... 73.6 1e-11
gi|271967511|ref|YP_003341707.1| transcriptional modulator of Ma... 71.6 5e-11
gi|408826319|ref|ZP_11211209.1| transcriptional modulator of Maz... 67.0 1e-09
gi|271968908|ref|YP_003343104.1| hypothetical protein [Streptosp... 66.6 2e-09
gi|111224956|ref|YP_715750.1| PemK family DNA-binding protein [F... 61.6 5e-08
gi|403717574|ref|ZP_10942753.1| hypothetical protein KILIM_069_0... 58.9 3e-07
gi|379711680|ref|YP_005266885.1| putative endoribonuclease mazF ... 57.4 1e-06
gi|333977733|ref|YP_004515678.1| CopG family transcriptional reg... 56.6 2e-06
gi|83589584|ref|YP_429593.1| CopG family transcriptional regulat... 53.9 1e-05
gi|169832261|ref|YP_001718243.1| transcriptional modulator of Ma... 52.4 3e-05
gi|333989899|ref|YP_004522513.1| PemK protein [Mycobacterium sp.... 51.2 6e-05
gi|94269845|ref|ZP_01291581.1| PemK-like protein [delta proteoba... 50.1 1e-04
gi|134098767|ref|YP_001104428.1| hypothetical protein SACE_2197 ... 49.3 3e-04
gi|94266063|ref|ZP_01289782.1| PemK-like protein [delta proteoba... 48.9 4e-04
gi|350564786|ref|ZP_08933602.1| transcriptional modulator of Maz... 48.5 4e-04
gi|384085996|ref|ZP_09997171.1| transcriptional modulator of Maz... 48.1 6e-04
gi|397729032|ref|ZP_10495821.1| pemK-like family protein [Rhodoc... 44.7 0.006
gi|49482598|ref|YP_039822.1| hypothetical protein SAR0365 [Staph... 43.5 0.013
gi|282907694|ref|ZP_06315536.1| conserved hypothetical protein [... 43.5 0.015
gi|402347193|gb|EJU82242.1| hypothetical protein HMPREF1384_0192... 43.1 0.017
gi|282902954|ref|ZP_06310847.1| putative toxin-antitoxin system,... 43.1 0.020
gi|386762115|ref|YP_006235751.1| transcriptional modulator of Ma... 43.1 0.021
gi|313142815|ref|ZP_07805008.1| transcriptional modulator of Maz... 42.7 0.022
gi|378766744|ref|YP_005195207.1| programmed cell death toxin Pem... 42.7 0.026
gi|344201033|ref|YP_004785359.1| transcriptional modulator of Ma... 42.4 0.033
gi|336178935|ref|YP_004584310.1| PemK family protein [Frankia sy... 42.0 0.041
gi|386078929|ref|YP_005992454.1| Programmed cell death toxin Pem... 42.0 0.044
gi|398331625|ref|ZP_10516330.1| proteic killer gene system prote... 41.6 0.049
gi|116329236|ref|YP_798956.1| proteic killer gene system protein... 41.6 0.051
gi|359685767|ref|ZP_09255768.1| proteic killer gene system prote... 41.6 0.053
>gi|167969705|ref|ZP_02551982.1| hypothetical protein MtubH3_17448 [Mycobacterium tuberculosis
H37Ra]
gi|253797801|ref|YP_003030802.1| hypothetical protein TBMG_00868 [Mycobacterium tuberculosis KZN
1435]
gi|254233722|ref|ZP_04927047.1| hypothetical protein TBCG_03035 [Mycobacterium tuberculosis C]
54 more sequence titles
Length=106
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/106 (99%), Positives = 106/106 (100%), Gaps = 0/106 (0%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEV 60
+VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEV
Sbjct 1 MVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEV 60
Query 61 MGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
MGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL
Sbjct 61 MGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
>gi|289571304|ref|ZP_06451531.1| PemK protein [Mycobacterium tuberculosis T17]
gi|289755215|ref|ZP_06514593.1| PemK [Mycobacterium tuberculosis EAS054]
gi|289759223|ref|ZP_06518601.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
10 more sequence titles
Length=105
Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM
Sbjct 1 MIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 60
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL
Sbjct 61 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 105
>gi|336176869|ref|YP_004582244.1| PemK family protein [Frankia symbiont of Datisca glomerata]
gi|334857849|gb|AEH08323.1| PemK family protein [Frankia symbiont of Datisca glomerata]
Length=105
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/105 (72%), Positives = 89/105 (85%), Gaps = 0/105 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRGAVYRVD GDA+RGHEQRGRR +V+SP SMPW+V TV+PTST+AQPAVFRP LE+
Sbjct 1 MIRGAVYRVDLGDARRGHEQRGRRLGLVLSPSSMPWNVATVIPTSTTAQPAVFRPSLEIG 60
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G TRFLVDQIR++ + YVHGDPV YLD ++A+VE AV RYLGL
Sbjct 61 GQLTRFLVDQIRSLDVAYVHGDPVHYLDHHELAEVERAVIRYLGL 105
>gi|254383106|ref|ZP_04998460.1| PemK [Streptomyces sp. Mg1]
gi|194342005|gb|EDX22971.1| PemK [Streptomyces sp. Mg1]
Length=105
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/105 (71%), Positives = 86/105 (82%), Gaps = 0/105 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRGAVYRVD GDAKRGHEQRG+RY +V+SP M WSVVT+VPTST AQ + FRPELE+
Sbjct 1 MIRGAVYRVDLGDAKRGHEQRGKRYGLVLSPSGMAWSVVTIVPTSTGAQESPFRPELEIA 60
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G TR LVDQIRTI + +VHGDPV YLDR ++A+VE AV YLGL
Sbjct 61 GRLTRLLVDQIRTIDVSFVHGDPVHYLDRYELAQVEQAVTLYLGL 105
>gi|408779997|ref|ZP_11191770.1| PemK protein [Mycobacterium kansasii ATCC 12478]
Length=93
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/81 (89%), Positives = 76/81 (94%), Gaps = 0/81 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRGA+YRVDFG AKRGHEQRGRRYAVVISPGSMPWSV+T VPTST AQPAVFRPELE+M
Sbjct 1 MIRGAIYRVDFGHAKRGHEQRGRRYAVVISPGSMPWSVITAVPTSTKAQPAVFRPELEIM 60
Query 62 GTKTRFLVDQIRTIGIVYVHG 82
GTKTRFLVDQIRTI IV VHG
Sbjct 61 GTKTRFLVDQIRTINIVSVHG 81
>gi|269956542|ref|YP_003326331.1| transcriptional modulator of MazE/toxin, MazF [Xylanimonas cellulosilytica
DSM 15894]
gi|269305223|gb|ACZ30773.1| transcriptional modulator of MazE/toxin, MazF [Xylanimonas cellulosilytica
DSM 15894]
Length=111
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/105 (70%), Positives = 85/105 (81%), Gaps = 1/105 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRG VY+VD G A RGHEQRGRRY +V+SP M SVVTVVPTSTSA PAV+RPE+EV
Sbjct 1 MIRGVVYQVDLGQAPRGHEQRGRRYGLVVSPSDMALSVVTVVPTSTSAGPAVYRPEMEVA 60
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G TRFLVDQ+R I I Y+ G+PVDYL RDQMA++EH +A YLGL
Sbjct 61 GRATRFLVDQVRVIDIDYI-GEPVDYLTRDQMAQIEHTLANYLGL 104
>gi|379736703|ref|YP_005330209.1| putative PemK [Blastococcus saxobsidens DD2]
gi|378784510|emb|CCG04179.1| putative PemK [Blastococcus saxobsidens DD2]
Length=105
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/105 (64%), Positives = 86/105 (82%), Gaps = 0/105 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRGAVYRVD G+A+RGHEQR RRY +V+SP M WSV T+VPTST AQPAVFRPE+E+
Sbjct 1 MIRGAVYRVDLGEARRGHEQRSRRYGLVLSPTDMAWSVATIVPTSTRAQPAVFRPEIELG 60
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G TRFLVDQ+R+I + ++HG+P +L R++ +VE AV+RYLGL
Sbjct 61 GVPTRFLVDQLRSIDVRFLHGEPAYFLHREEFEEVEVAVSRYLGL 105
>gi|379029435|dbj|BAL67168.1| pemK family protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
Length=65
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/65 (99%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Query 42 VVPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVA 101
+VPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVA
Sbjct 1 MVPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVA 60
Query 102 RYLGL 106
RYLGL
Sbjct 61 RYLGL 65
>gi|336119644|ref|YP_004574421.1| hypothetical protein MLP_40040 [Microlunatus phosphovorus NM-1]
gi|334687433|dbj|BAK37018.1| hypothetical protein MLP_40040 [Microlunatus phosphovorus NM-1]
Length=113
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (78%), Gaps = 1/105 (0%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+IRGAVYR+D G RGHEQ G+R +V+SP P SVVTV+PTSTSA+P++ RP+LE+
Sbjct 1 MIRGAVYRIDLG-RPRGHEQGGKRLGLVMSPPDSPLSVVTVIPTSTSARPSIHRPKLEIA 59
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G TR LVDQIR+I YV G+PVDYL D++A+VE A+A YLG+
Sbjct 60 GRSTRLLVDQIRSIDTDYVIGEPVDYLTCDRLAQVELALAHYLGV 104
>gi|54022736|ref|YP_116978.1| hypothetical protein nfa7690 [Nocardia farcinica IFM 10152]
gi|54014244|dbj|BAD55614.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=106
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/106 (44%), Positives = 66/106 (63%), Gaps = 1/106 (0%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEV 60
++ RGAVY + RGHEQ+GRR AV+I P S V V TSTSA A++RPE+E+
Sbjct 1 MIFRGAVYEIKALPGARGHEQQGRRCAVIIQSDRFPASTVIVALTSTSAGHAIYRPEIEL 60
Query 61 MGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G +TR L DQI T+ + G+ LDR+++A+++ + LGL
Sbjct 61 DGVRTRVLTDQIYTVAPERL-GEFKGSLDREELAELDRGLMLKLGL 105
>gi|354613461|ref|ZP_09031380.1| transcriptional modulator of MazE/toxin, MazF [Saccharomonospora
paurometabolica YIM 90007]
gi|353222182|gb|EHB86501.1| transcriptional modulator of MazE/toxin, MazF [Saccharomonospora
paurometabolica YIM 90007]
Length=106
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/106 (41%), Positives = 68/106 (65%), Gaps = 1/106 (0%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEV 60
++ RGA+Y++ RG+EQ+GRR+AV++ S VTV TST A PA++RPE+E+
Sbjct 1 MIFRGAIYQIKALPGARGNEQQGRRFAVIVQSDRFASSTVTVALTSTRAGPAIYRPEVEL 60
Query 61 MGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G+KTR L DQI ++ + G+ LD ++A+++ A+ LGL
Sbjct 61 DGSKTRVLTDQIHSVSPDRL-GEFAGTLDNGELAELDRALLLKLGL 105
>gi|397669792|ref|YP_006511327.1| PemK-like protein [Propionibacterium propionicum F0230a]
gi|395142724|gb|AFN46831.1| PemK-like protein [Propionibacterium propionicum F0230a]
Length=105
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (41%), Positives = 60/104 (58%), Gaps = 0/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG +YR+ GHEQ G RYAVVI + S + V PTSTS +P FRP + + G
Sbjct 1 MRGDIYRLRVKKHAHGHEQHGIRYAVVIQADYLNLSTLLVAPTSTSVRPCDFRPTITIDG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
T+TR LV+Q + GD LD +++ +++ A+A LGL
Sbjct 61 TETRVLVEQTAAVNAETRLGDFAGRLDAEELTELDRALALVLGL 104
>gi|403727150|ref|ZP_10947484.1| hypothetical protein GORHZ_150_00120 [Gordonia rhizosphera NBRC
16068]
gi|403204094|dbj|GAB91815.1| hypothetical protein GORHZ_150_00120 [Gordonia rhizosphera NBRC
16068]
Length=103
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/98 (43%), Positives = 59/98 (61%), Gaps = 1/98 (1%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG VYR+ RGHEQ G RYAVV+ +P S V PTSTSA+ A FRPE+EV G
Sbjct 1 MRGEVYRLRTPKNARGHEQSGARYAVVVQSDQLPLSTWLVAPTSTSARAATFRPEVEVAG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAV 100
TR L +Q+ + + G+ YL +++ +V+ A+
Sbjct 61 RTTRVLAEQVAAVDPQRL-GESAGYLTYEELRRVDAAL 97
>gi|333989313|ref|YP_004521927.1| PemK-like protein [Mycobacterium sp. JDM601]
gi|333485280|gb|AEF34672.1| PemK-like protein [Mycobacterium sp. JDM601]
Length=105
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/104 (41%), Positives = 61/104 (59%), Gaps = 0/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG +YR+ RGHEQ G RYAVV+ +P S + PTST + A FRPE+++ G
Sbjct 1 MRGDLYRLKAPKDARGHEQAGGRYAVVVQSDDLPLSTWIIAPTSTGRRAASFRPEIDIAG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
TKTR +V+Q+ I G+ V L ++A ++ A+ LGL
Sbjct 61 TKTRVMVEQLTVIDPQRRLGEFVGRLTGSELAAIDTALVAVLGL 104
>gi|111024791|ref|YP_707211.1| growth inhibitor [Rhodococcus jostii RHA1]
gi|110823770|gb|ABG99053.1| possible growth inhibitor [Rhodococcus jostii RHA1]
Length=200
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/99 (45%), Positives = 60/99 (61%), Gaps = 1/99 (1%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVM 61
+RG V+R+ RGHEQRG+RYAVV+ +P S V V PTSTSA+ A FRPE+ V
Sbjct 96 CVRGEVFRMKAPRNARGHEQRGQRYAVVVQNDLLPLSTVLVAPTSTSARTASFRPEVVVD 155
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAV 100
GT T LV+Q + + G+ V +L R ++ V A+
Sbjct 156 GTSTVVLVEQTAAVDPTRL-GESVGFLSRGELDAVSAAL 193
>gi|392416793|ref|YP_006453398.1| growth inhibitor [Mycobacterium chubuense NBB4]
gi|390616569|gb|AFM17719.1| growth inhibitor [Mycobacterium chubuense NBB4]
Length=103
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/98 (41%), Positives = 59/98 (61%), Gaps = 1/98 (1%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG V+R++ RGHEQ G RYAVV+ +P S V PTSTSA+ A FRP++++ G
Sbjct 1 MRGEVFRLNAARGSRGHEQSGTRYAVVVQSDQLPLSTWLVAPTSTSARAASFRPDVKIGG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAV 100
TR L +Q + + G V +L D+M +V+ A+
Sbjct 61 INTRVLAEQAAAVDPGRL-GKSVGFLSFDEMRRVDAAL 97
>gi|379734191|ref|YP_005327696.1| putative prevent-host-death protein, putative antitoxin of TAS
system, putative pemK domain [Blastococcus saxobsidens DD2]
gi|378781997|emb|CCG01652.1| Putative prevent-host-death protein, putative antitoxin of TAS
system, putative pemK domain [Blastococcus saxobsidens DD2]
Length=103
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/104 (42%), Positives = 60/104 (58%), Gaps = 1/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG VYR+ RGHEQ G RYAVV+ +P S V PTSTSA+ A FRPE+ + G
Sbjct 1 MRGEVYRLHSPRGARGHEQAGVRYAVVVQSDLLPLSTWLVAPTSTSARTATFRPEVSIDG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
TR L +Q + + G+ +L D++ +V+ A+ LGL
Sbjct 61 RPTRVLAEQTSAVDPQRL-GESAGHLSFDELRQVDAALRLVLGL 103
>gi|119715391|ref|YP_922356.1| putative growth inhibitor [Nocardioides sp. JS614]
gi|119536052|gb|ABL80669.1| putative growth inhibitor [Nocardioides sp. JS614]
Length=104
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/104 (42%), Positives = 64/104 (62%), Gaps = 1/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG V+ + +GHEQRGRR+AVV+ +P S V PTS+SA+ + FRPE+EV G
Sbjct 1 MRGDVFELRVPRGSQGHEQRGRRFAVVVQSDLLPLSTWLVAPTSSSARASGFRPEVEVGG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
T TR LV+Q + + GD V +L ++ +V+ ++ LGL
Sbjct 61 TVTRVLVEQTAAVDPQRL-GDLVGHLTGAELDEVDRSLRIVLGL 103
>gi|389863277|ref|YP_006365517.1| prevent-host-death protein, putative antitoxin of TAS system,
putative pemK domain [Modestobacter marinus]
gi|388485480|emb|CCH87024.1| Putative prevent-host-death protein, putative antitoxin of TAS
system, putative pemK domain [Modestobacter marinus]
Length=103
Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/104 (42%), Positives = 59/104 (57%), Gaps = 1/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG VYR+ RGHEQ G RYAVV+ +P S V PTSTSA+ A FRPE+ + G
Sbjct 1 MRGEVYRLRSPRGARGHEQAGVRYAVVVQSDLLPLSTWLVAPTSTSARAATFRPEVSIAG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
TR L +Q + + G+ L D++ +V+ A+ LGL
Sbjct 61 HLTRVLAEQTSAVDPQRL-GESAGNLSFDELRRVDAALRLVLGL 103
>gi|379734845|ref|YP_005328351.1| putative prevent-host-death protein, putative antitoxin of TAS
system, putative pemK domain [Blastococcus saxobsidens DD2]
gi|378782652|emb|CCG02318.1| Putative prevent-host-death protein, putative antitoxin of TAS
system, putative pemK domain [Blastococcus saxobsidens DD2]
Length=103
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/104 (41%), Positives = 60/104 (58%), Gaps = 1/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG VYR+ +GHEQ G RYAVV+ +P S V PTSTSA+ A FRPE+ + G
Sbjct 1 MRGEVYRLRSPRGAQGHEQAGTRYAVVVQSDLLPLSTWLVAPTSTSARAATFRPEVSIDG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
TR L +Q + + G+ +L D++ +V+ A+ LGL
Sbjct 61 RPTRVLAEQTSAVDPQRL-GESAGHLSFDELRQVDAALRLVLGL 103
>gi|183982959|ref|YP_001851250.1| PemK-like protein [Mycobacterium marinum M]
gi|183176285|gb|ACC41395.1| PemK-like protein [Mycobacterium marinum M]
Length=103
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (41%), Positives = 57/98 (59%), Gaps = 1/98 (1%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG V+++ RGHEQ RYAVV+ +P S V PTSTSA+ A FRPE+E+ G
Sbjct 1 MRGEVFQLRAPRGSRGHEQSSSRYAVVVQSDQLPLSTWLVAPTSTSARAASFRPEVEIAG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAV 100
TR L +Q + + G V +L D+M +V+ A+
Sbjct 61 VNTRVLAEQAAAVDPGRL-GTSVGFLSFDEMRRVDAAL 97
>gi|271967511|ref|YP_003341707.1| transcriptional modulator of MazE/toxin MazF [Streptosporangium
roseum DSM 43021]
gi|270510686|gb|ACZ88964.1| transcriptional modulator of MazE/toxin, MazF [Streptosporangium
roseum DSM 43021]
Length=110
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/105 (40%), Positives = 61/105 (59%), Gaps = 2/105 (1%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMP-WSVVTVVPTSTSAQPAVFRPELEVM 61
+RG VYR+ GHEQRG R+AV++ + S + V PTSTSA PA+FRPE+E+
Sbjct 5 MRGDVYRLRAPRDAVGHEQRGERFAVLLQADFISMLSTLIVAPTSTSAGPAIFRPEIELN 64
Query 62 GTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
G TR L+DQI+ + GD L ++ +++ + + L L
Sbjct 65 GKATRVLIDQIKATDTSRL-GDFAGRLSSYELDEIDRVLLKVLAL 108
>gi|408826319|ref|ZP_11211209.1| transcriptional modulator of MazE/toxin MazF [Streptomyces somaliensis
DSM 40738]
Length=104
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/104 (40%), Positives = 61/104 (59%), Gaps = 1/104 (0%)
Query 3 IRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMG 62
+RG V+R+ G EQRG RYAVV+ ++ S + V PTSTSA P + P+L++ G
Sbjct 1 MRGDVHRLRARRDAVGREQRGTRYAVVLQTQALLTSTLIVAPTSTSAAPGLLHPKLDMDG 60
Query 63 TKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
T T LV+Q+ + + GD +D ++ ++EHAV LGL
Sbjct 61 TPTVVLVEQMAAVDPQRL-GDFAGRVDPEEWDEIEHAVKLVLGL 103
>gi|271968908|ref|YP_003343104.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270512083|gb|ACZ90361.1| hypothetical protein Sros_7690 [Streptosporangium roseum DSM
43021]
Length=106
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (46%), Positives = 48/74 (65%), Gaps = 0/74 (0%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMGT 63
+G+V+ V H Q+GRRYAVV++ S SVVTV PTSTSA+ ++ RPE E+ G
Sbjct 4 KGSVFHVTLPARSSDHTQQGRRYAVVVTATSFIGSVVTVAPTSTSARASLTRPEAEIDGR 63
Query 64 KTRFLVDQIRTIGI 77
K R L++Q+ + I
Sbjct 64 KCRILLEQMLAVDI 77
>gi|111224956|ref|YP_715750.1| PemK family DNA-binding protein [Frankia alni ACN14a]
gi|111152488|emb|CAJ64225.1| putative PemK-family DNA-binding protein [Frankia alni ACN14a]
Length=51
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/47 (62%), Positives = 35/47 (75%), Gaps = 0/47 (0%)
Query 60 VMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
+ G TR L+DQIRTI YV G+ VDYL RD MA+VEH ++RYLGL
Sbjct 3 ITGRSTRILIDQIRTIDSSYVTGELVDYLSRDDMAQVEHILSRYLGL 49
>gi|403717574|ref|ZP_10942753.1| hypothetical protein KILIM_069_00040 [Kineosphaera limosa NBRC
100340]
gi|403209050|dbj|GAB97436.1| hypothetical protein KILIM_069_00040 [Kineosphaera limosa NBRC
100340]
Length=86
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 1/79 (1%)
Query 28 VVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTIGIVYVHGDPVDY 87
VV+ +P S V V PTST+A P FRPE+E+ G T L++ +R I + G V +
Sbjct 3 VVLQSEDLPLSTVIVAPTSTAATPRSFRPEVEIEGRATCVLLEHLRGIDTARL-GARVGH 61
Query 88 LDRDQMAKVEHAVARYLGL 106
L R ++A VE A+ LGL
Sbjct 62 LSRTELAAVEEALELVLGL 80
>gi|379711680|ref|YP_005266885.1| putative endoribonuclease mazF [Nocardia cyriacigeorgica GUH-2]
gi|374849179|emb|CCF66255.1| putative endoribonuclease mazF [Nocardia cyriacigeorgica GUH-2]
Length=79
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/79 (44%), Positives = 46/79 (59%), Gaps = 1/79 (1%)
Query 28 VVISPGSMPWSVVTVVPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTIGIVYVHGDPVDY 87
+VI S V V TSTSA PA+FRPE+E GTKTR L DQI T+ + G
Sbjct 1 MVIQSDRFASSTVIVAMTSTSAAPAIFRPEIEFDGTKTRILADQIYTVAPERL-GQCKGS 59
Query 88 LDRDQMAKVEHAVARYLGL 106
LD ++++++ A+ LGL
Sbjct 60 LDGSELSELDRALMLKLGL 78
>gi|333977733|ref|YP_004515678.1| CopG family transcriptional regulator [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821214|gb|AEG13877.1| CopG family transcriptional regulator [Desulfotomaculum kuznetsovii
DSM 6115]
Length=110
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/72 (49%), Positives = 41/72 (57%), Gaps = 3/72 (4%)
Query 5 GAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSAQPAVFRPELEVMGT 63
G +YRV GH RG YAVV+S + S V +VP ST A+PA FRPEL G
Sbjct 9 GDIYRVSLEGT--GHILRGPHYAVVVSDEPFNYLSTVVIVPLSTGARPASFRPELTFHGK 66
Query 64 KTRFLVDQIRTI 75
TR L DQIR +
Sbjct 67 VTRALPDQIRAV 78
>gi|83589584|ref|YP_429593.1| CopG family transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83572498|gb|ABC19050.1| putative transcriptional regulator, CopG family [Moorella thermoacetica
ATCC 39073]
Length=134
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (48%), Positives = 36/59 (62%), Gaps = 1/59 (1%)
Query 18 GHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTI 75
GH RG Y VV+S G + S + +VP ST A+PA FRPE+ G TR L DQ+R +
Sbjct 45 GHVLRGPLYGVVVSDGPFNYLSTIVIVPLSTGAKPATFRPEISFHGKVTRALPDQLRAV 103
>gi|169832261|ref|YP_001718243.1| transcriptional modulator of MazE/toxin MazF [Candidatus Desulforudis
audaxviator MP104C]
gi|169639105|gb|ACA60611.1| transcriptional modulator of MazE/toxin, MazF [Candidatus Desulforudis
audaxviator MP104C]
Length=130
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/76 (43%), Positives = 45/76 (60%), Gaps = 3/76 (3%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMP-WSVVTVVPTSTSAQ-PAVFRPELEVM 61
RG +YR+ GD K GH+ RG YAVV+ S VVP S+S + PA F L+V+
Sbjct 7 RGDIYRIALGDTK-GHKTRGSHYAVVVQADLYNVLSTALVVPLSSSVKRPAPFHVPLQVL 65
Query 62 GTKTRFLVDQIRTIGI 77
G +T LV+Q+R + +
Sbjct 66 GKRTYALVEQLRAVDV 81
>gi|333989899|ref|YP_004522513.1| PemK protein [Mycobacterium sp. JDM601]
gi|333485867|gb|AEF35259.1| PemK [Mycobacterium sp. JDM601]
Length=49
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/40 (63%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 67 FLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
LVDQIR+I YV GDPVDYL RDQ+ +VE A+ YLG+
Sbjct 1 MLVDQIRSIDTHYVVGDPVDYLTRDQLVEVELALVHYLGV 40
>gi|94269845|ref|ZP_01291581.1| PemK-like protein [delta proteobacterium MLMS-1]
gi|93451053|gb|EAT02009.1| PemK-like protein [delta proteobacterium MLMS-1]
Length=104
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 46/84 (55%), Gaps = 3/84 (3%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSV--VTVVPTSTSAQPAVFRPEL 58
+V RG VY V+ D G E + R A+VISP M + V V P ++ QP RPE+
Sbjct 3 MVKRGEVYWVNL-DPTEGTEIKKTRPALVISPDDMNVVLPRVLVAPLTSKGQPLGCRPEI 61
Query 59 EVMGTKTRFLVDQIRTIGIVYVHG 82
+ G + R L+DQ+R + + + G
Sbjct 62 TLGGKQARILLDQLRCVDKIRLVG 85
>gi|134098767|ref|YP_001104428.1| hypothetical protein SACE_2197 [Saccharopolyspora erythraea NRRL
2338]
gi|291003549|ref|ZP_06561522.1| hypothetical protein SeryN2_03397 [Saccharopolyspora erythraea
NRRL 2338]
gi|133911390|emb|CAM01503.1| hypothetical protein SACE_2197 [Saccharopolyspora erythraea NRRL
2338]
Length=226
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (41%), Positives = 40/69 (58%), Gaps = 1/69 (1%)
Query 38 SVVTVVPTSTSAQPAVFRPELEVMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVE 97
S V TSTSA A++RPE E+ GTKTR L DQI ++ G+ L+ D++A ++
Sbjct 11 STAAVALTSTSAGAAIYRPEFELDGTKTRILTDQIHSVSPNRF-GEFNGSLEADELADLD 69
Query 98 HAVARYLGL 106
A+ GL
Sbjct 70 RALMLRFGL 78
>gi|94266063|ref|ZP_01289782.1| PemK-like protein [delta proteobacterium MLMS-1]
gi|93453385|gb|EAT03813.1| PemK-like protein [delta proteobacterium MLMS-1]
Length=102
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 46/84 (55%), Gaps = 3/84 (3%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSV--VTVVPTSTSAQPAVFRPEL 58
+V RG VY V+ D G E + R A+VISP M + V V P ++ QP RPE+
Sbjct 1 MVKRGEVYWVNL-DPTVGTEIKKTRPALVISPDDMNVVLPRVLVAPLTSKGQPLGCRPEI 59
Query 59 EVMGTKTRFLVDQIRTIGIVYVHG 82
+ G + R L+DQ+R + + + G
Sbjct 60 TLGGKQARILLDQLRCVDKIRLVG 83
>gi|350564786|ref|ZP_08933602.1| transcriptional modulator of MazE/toxin, MazF [Thioalkalimicrobium
aerophilum AL3]
gi|349777488|gb|EGZ31852.1| transcriptional modulator of MazE/toxin, MazF [Thioalkalimicrobium
aerophilum AL3]
Length=120
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query 2 VIRGAVYRVDFGDAKRGHEQRGRRYAVVISPG---SMPWSVVTVVPTSTS----AQPAVF 54
++RG VY + +K G+E R +V+ +P V V+P STS A+P F
Sbjct 7 LLRGGVYLANLNPSK-GNEPGKVRPVLVLQNNWLNELPHPTVIVLPLSTSLIDHAEPLRF 65
Query 55 RPEL-EVMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLG 105
R + + + + L DQIR + I + D + L ++M ++EH + + LG
Sbjct 66 RLQSRDRLHKASDVLCDQIRALDICRITSDCLTLLTPNEMQRIEHNIKQVLG 117
>gi|384085996|ref|ZP_09997171.1| transcriptional modulator of MazE/toxin, MazF [Acidithiobacillus
thiooxidans ATCC 19377]
Length=102
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (38%), Positives = 44/77 (58%), Gaps = 3/77 (3%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSV--VTVVPTSTSAQPAVFRPEL 58
+V RG VY V+ D G E + R A+++SP + ++ V + P ++ Q RPEL
Sbjct 1 MVKRGEVYWVNL-DPTVGTEIKKTRPALIVSPDDLNAALPRVIIAPLTSGGQRLGCRPEL 59
Query 59 EVMGTKTRFLVDQIRTI 75
E G + R L+DQIRT+
Sbjct 60 EFAGKQARILLDQIRTV 76
>gi|397729032|ref|ZP_10495821.1| pemK-like family protein [Rhodococcus sp. JVH1]
gi|396935074|gb|EJJ02195.1| pemK-like family protein [Rhodococcus sp. JVH1]
Length=118
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 60/118 (51%), Gaps = 13/118 (11%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWS-------VVTVVP-TSTSAQPA 52
++ RG V+ VD D +G E RR AVV+S + VVTVVP TS +A
Sbjct 1 MIRRGQVHWVDL-DPAQGSEAAKRRPAVVVSNDRANATAERLGRGVVTVVPLTSNTAHVF 59
Query 53 VFR----PELEVMGTKTRFLVDQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARYLGL 106
F+ P+ M +++ +Q+R++ + + GDPV L +A +E A+ +L L
Sbjct 60 AFQVLVEPDESGMPRESKARAEQVRSVSVRRLDGDPVGKLSTRTLAALEEALRLHLDL 117
>gi|49482598|ref|YP_039822.1| hypothetical protein SAR0365 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|221142676|ref|ZP_03567169.1| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|297588885|ref|ZP_06947526.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MN8]
17 more sequence titles
Length=239
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (35%), Positives = 36/67 (54%), Gaps = 9/67 (13%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSA-------QPAVFR 55
RG++ +DFG GHE GR + +V++ P+ S+VTVVP S+ Q VF+
Sbjct 16 RGSIIYLDFG-INIGHEFSGRHFGIVLNKNDSPYNSLVTVVPLSSKNKKHYLPLQNIVFK 74
Query 56 PELEVMG 62
L ++
Sbjct 75 TSLSILN 81
>gi|282907694|ref|ZP_06315536.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282328599|gb|EFB58870.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus WW2703/97]
Length=239
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/67 (35%), Positives = 36/67 (54%), Gaps = 9/67 (13%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTS-------AQPAVFR 55
RG++ +DFG GHE GR + +V++ P+ S+VTVVP S+ Q VF+
Sbjct 16 RGSIIYLDFG-INIGHEFSGRHFGIVLNKNDSPYNSLVTVVPLSSKDKKHYLPLQNIVFK 74
Query 56 PELEVMG 62
L ++
Sbjct 75 TSLSILN 81
>gi|402347193|gb|EJU82242.1| hypothetical protein HMPREF1384_01929 [Staphylococcus aureus
subsp. aureus CM05]
Length=161
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/67 (35%), Positives = 36/67 (54%), Gaps = 9/67 (13%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSA-------QPAVFR 55
RG++ +DFG GHE GR + +V++ P+ S+VTVVP S+ Q VF+
Sbjct 16 RGSIIYLDFG-INIGHEFSGRHFGIVLNKNDSPYNSLVTVVPLSSKNKKHYLPLQNIVFK 74
Query 56 PELEVMG 62
L ++
Sbjct 75 TSLSILN 81
>gi|282902954|ref|ZP_06310847.1| putative toxin-antitoxin system, toxin component, MazF family
[Staphylococcus aureus subsp. aureus C160]
gi|282907351|ref|ZP_06315199.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|283959807|ref|ZP_06377248.1| putative toxin-antitoxin system, toxin component, MazF family
[Staphylococcus aureus subsp. aureus A017934/97]
gi|295426903|ref|ZP_06819542.1| hypothetical protein SIAG_01061 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|282330250|gb|EFB59771.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282597413|gb|EFC02372.1| putative toxin-antitoxin system, toxin component, MazF family
[Staphylococcus aureus subsp. aureus C160]
gi|283789399|gb|EFC28226.1| putative toxin-antitoxin system, toxin component, MazF family
[Staphylococcus aureus subsp. aureus A017934/97]
gi|295129355|gb|EFG58982.1| hypothetical protein SIAG_01061 [Staphylococcus aureus subsp.
aureus EMRSA16]
Length=264
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/67 (35%), Positives = 36/67 (54%), Gaps = 9/67 (13%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSA-------QPAVFR 55
RG++ +DFG GHE GR + +V++ P+ S+VTVVP S+ Q VF+
Sbjct 41 RGSIIYLDFG-INIGHEFSGRHFGIVLNKNDSPYNSLVTVVPLSSKNKKHYLPLQNIVFK 99
Query 56 PELEVMG 62
L ++
Sbjct 100 TSLSILN 106
>gi|386762115|ref|YP_006235751.1| transcriptional modulator of MazE/toxin MazF [Helicobacter cinaedi
PAGU611]
gi|385147132|dbj|BAM12640.1| transcriptional modulator of MazE/toxin, MazF [Helicobacter cinaedi
PAGU611]
gi|396079467|dbj|BAM32843.1| growth inhibitor protein [Helicobacter cinaedi ATCC BAA-847]
Length=103
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/89 (31%), Positives = 39/89 (44%), Gaps = 2/89 (2%)
Query 7 VYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSAQPAVFRPELEVMGTKT 65
++ +D K G E +R V+ISP + + V P ++ A FR E+ G K+
Sbjct 6 IFWIDLNLTK-GAEISKKRPCVIISPNELNYLQTRLVAPITSKGFDAPFRVNFELEGKKS 64
Query 66 RFLVDQIRTIGIVYVHGDPVDYLDRDQMA 94
R L DQIR + I D Q A
Sbjct 65 RILCDQIRCVSIDRFLNKICDLESNKQEA 93
>gi|313142815|ref|ZP_07805008.1| transcriptional modulator of MazE/toxin [Helicobacter cinaedi
CCUG 18818]
gi|313127846|gb|EFR45463.1| transcriptional modulator of MazE/toxin [Helicobacter cinaedi
CCUG 18818]
Length=108
Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query 7 VYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-SVVTVVPTSTSAQPAVFRPELEVMGTKT 65
++ +D K G E +R V+ISP + + V P ++ A FR E+ G K+
Sbjct 11 IFWIDLNLTK-GAEISKKRPCVIISPNELNYLQTRLVAPITSKGFDAPFRVNFELEGKKS 69
Query 66 RFLVDQIRTIGI 77
R L DQIR + I
Sbjct 70 RILCDQIRCVSI 81
>gi|378766744|ref|YP_005195207.1| programmed cell death toxin PemK [Pantoea ananatis LMG 5342]
gi|365186220|emb|CCF09170.1| programmed cell death toxin PemK [Pantoea ananatis LMG 5342]
Length=110
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/107 (36%), Positives = 50/107 (47%), Gaps = 11/107 (10%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-----SVVTVVPTSTSAQPAVFRPEL 58
RG ++ V D GHEQ GRR +++SP S VV V A+ A F L
Sbjct 3 RGEIWLVSL-DPNAGHEQSGRRPVLIVSPASFNQFTRLPVVVPVTNGGNFARAAGFTVSL 61
Query 59 EVMGTKTRFLV--DQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARY 103
+ GTKT ++ DQ RTI + +G YL+R V VAR
Sbjct 62 DGAGTKTTGVIRCDQPRTIDMEARNG---KYLERIPEVIVNEVVARL 105
>gi|344201033|ref|YP_004785359.1| transcriptional modulator of MazE/toxin, MazF [Acidithiobacillus
ferrivorans SS3]
gi|343776477|gb|AEM49033.1| transcriptional modulator of MazE/toxin, MazF [Acidithiobacillus
ferrivorans SS3]
Length=98
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/77 (37%), Positives = 41/77 (54%), Gaps = 7/77 (9%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSV--VTVVPTSTSAQPAVFRPEL 58
+V RG VY V+ G E R R A+++SP + ++ V + ++ Q RPEL
Sbjct 1 MVKRGEVYWVNVGT-----EIRKTRPALIVSPDDLNAALPRVIIALLTSGGQRLGCRPEL 55
Query 59 EVMGTKTRFLVDQIRTI 75
E G R L+DQIRT+
Sbjct 56 EFAGKSARILLDQIRTV 72
>gi|336178935|ref|YP_004584310.1| PemK family protein [Frankia symbiont of Datisca glomerata]
gi|334859915|gb|AEH10389.1| PemK family protein [Frankia symbiont of Datisca glomerata]
Length=113
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/107 (31%), Positives = 61/107 (58%), Gaps = 8/107 (7%)
Query 7 VYRVDFGDAKRGHEQRGRRYAVVISP----GSMPWSVVTVVPTSTSAQPA-VFRPELEVM 61
V+ +DF D G EQ GRR A+V+S ++V+V+P +T +P + R ++V
Sbjct 8 VWWLDF-DPTEGREQAGRRPALVVSSRFHLALTGGALVSVLPLTTRERPGWIHRVRIDVP 66
Query 62 GTKTRFLV-DQIRTIGIVYVHG-DPVDYLDRDQMAKVEHAVARYLGL 106
G + +++ +Q+RT+ + G P+ LD +Q+A+V +A+ + L
Sbjct 67 GKRAGWVITEQVRTVSAGRLTGRGPLHRLDAEQVAEVRTVLAQMIDL 113
>gi|386078929|ref|YP_005992454.1| Programmed cell death toxin PemK [Pantoea ananatis PA13]
gi|354988110|gb|AER32234.1| Programmed cell death toxin PemK [Pantoea ananatis PA13]
Length=110
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/107 (35%), Positives = 50/107 (47%), Gaps = 11/107 (10%)
Query 4 RGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPW-----SVVTVVPTSTSAQPAVFRPEL 58
RG ++ V D GHEQ GRR +++SP S VV V A+ A F L
Sbjct 3 RGEIWLVSL-DPNAGHEQSGRRPVLIVSPASFNQFTRLPVVVPVTNGGNFARAAGFTVSL 61
Query 59 EVMGTKTRFLV--DQIRTIGIVYVHGDPVDYLDRDQMAKVEHAVARY 103
+ GTKT ++ DQ RT+ + +G YL+R V VAR
Sbjct 62 DGAGTKTTGVIRCDQPRTLDMEARNG---KYLERIPEVIVNEVVARL 105
>gi|398331625|ref|ZP_10516330.1| proteic killer gene system protein, growth inhibitor [Leptospira
alexanderi serovar Manhao 3 str. L 60]
Length=107
Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 42/77 (55%), Gaps = 3/77 (3%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVV--PTSTSAQPAVFRPEL 58
V+ + VY ++ D GHE + R V+ISP M ++ T++ P +T ++ R EL
Sbjct 2 VISQYEVYLINL-DPTVGHEIKKSRPCVIISPNEMNKTIGTIIIAPMTTKSRSYPTRVEL 60
Query 59 EVMGTKTRFLVDQIRTI 75
G K ++DQIRT+
Sbjct 61 TFQGKKGWIVLDQIRTV 77
>gi|116329236|ref|YP_798956.1| proteic killer gene system protein, growth inhibitor [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116330158|ref|YP_799876.1| proteic killer gene system protein, growth inhibitor [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
gi|116121980|gb|ABJ80023.1| Proteic killer gene system protein, growth inhibitor [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116123847|gb|ABJ75118.1| Proteic killer gene system protein, growth inhibitor [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
Length=107
Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 42/77 (55%), Gaps = 3/77 (3%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVV--PTSTSAQPAVFRPEL 58
V+ + VY ++ D GHE + R V+ISP M ++ T++ P +T ++ R EL
Sbjct 2 VISQYEVYLINL-DPTVGHEIKKSRPCVIISPNEMNKTIGTIIITPMTTKSRSYPTRVEL 60
Query 59 EVMGTKTRFLVDQIRTI 75
G K ++DQIRT+
Sbjct 61 TFQGKKGWIVLDQIRTV 77
>gi|359685767|ref|ZP_09255768.1| proteic killer gene system protein, growth inhibitor [Leptospira
santarosai str. 2000030832]
Length=107
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 42/77 (55%), Gaps = 3/77 (3%)
Query 1 VVIRGAVYRVDFGDAKRGHEQRGRRYAVVISPGSMPWSVVTVV--PTSTSAQPAVFRPEL 58
V+ + VY ++ D GHE + R V+ISP M ++ T++ P +T ++ R EL
Sbjct 2 VISQYEVYLINL-DPTIGHEIKKSRPCVIISPNEMNKTIGTIIIAPMTTKSRSYPTRVEL 60
Query 59 EVMGTKTRFLVDQIRTI 75
G K ++DQIRT+
Sbjct 61 TFQGKKGWIVLDQIRTV 77
Lambda K H
0.323 0.139 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 181115428096
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Oct 14, 2012 4:13 PM
Number of letters in database: 7,218,481,314
Number of sequences in database: 21,062,489
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40