BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3098c Length=150 Score E Sequences producing significant alignments: (Bits) Value gi|15610235|ref|NP_217614.1| hypothetical protein Rv3098c [Mycob... 288 1e-76 gi|15842669|ref|NP_337706.1| hypothetical protein MT3182 [Mycoba... 287 3e-76 gi|31794277|ref|NP_856770.1| hypothetical protein Mb3125c [Mycob... 287 4e-76 gi|328787338|ref|XP_003250926.1| PREDICTED: vacuolar protein sor... 36.6 1.2 >gi|15610235|ref|NP_217614.1| hypothetical protein Rv3098c [Mycobacterium tuberculosis H37Rv] gi|148662952|ref|YP_001284475.1| hypothetical protein MRA_3130 [Mycobacterium tuberculosis H37Ra] gi|148824290|ref|YP_001289044.1| hypothetical protein TBFG_13115 [Mycobacterium tuberculosis F11] 42 more sequence titles Length=150 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%) Query 1 VASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS 60 +ASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS Sbjct 1 MASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS 60 Query 61 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA 120 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA Sbjct 61 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA 120 Query 121 PRVIAGRFASESVRFPAAAPHGSVPSRLPV 150 PRVIAGRFASESVRFPAAAPHGSVPSRLPV Sbjct 121 PRVIAGRFASESVRFPAAAPHGSVPSRLPV 150 >gi|15842669|ref|NP_337706.1| hypothetical protein MT3182 [Mycobacterium tuberculosis CDC1551] gi|167969704|ref|ZP_02551981.1| hypothetical protein MtubH3_17443 [Mycobacterium tuberculosis H37Ra] gi|289448777|ref|ZP_06438521.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|13882988|gb|AAK47520.1| hypothetical protein MT3182 [Mycobacterium tuberculosis CDC1551] gi|289421735|gb|EFD18936.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=247 Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/150 (100%), Positives = 150/150 (100%), Gaps = 0/150 (0%) Query 1 VASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS 60 VASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS Sbjct 98 VASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS 157 Query 61 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA 120 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA Sbjct 158 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA 217 Query 121 PRVIAGRFASESVRFPAAAPHGSVPSRLPV 150 PRVIAGRFASESVRFPAAAPHGSVPSRLPV Sbjct 218 PRVIAGRFASESVRFPAAAPHGSVPSRLPV 247 >gi|31794277|ref|NP_856770.1| hypothetical protein Mb3125c [Mycobacterium bovis AF2122/97] gi|121638983|ref|YP_979207.1| hypothetical protein BCG_3123c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991475|ref|YP_002646164.1| hypothetical protein JTY_3118 [Mycobacterium bovis BCG str. Tokyo 172] gi|31619872|emb|CAD96812.1| HYPOTHETICAL PROTEIN Mb3125c [Mycobacterium bovis AF2122/97] gi|121494631|emb|CAL73112.1| Hypothetical protein BCG_3123c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774590|dbj|BAH27396.1| hypothetical protein JTY_3118 [Mycobacterium bovis BCG str. Tokyo 172] gi|341603022|emb|CCC65700.1| hypothetical protein BCGM_3107c [Mycobacterium bovis BCG str. Moreau RDJ] Length=150 Score = 287 bits (734), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%) Query 1 VASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS 60 +ASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS Sbjct 1 MASLRIAEVDPVDRSPNHHASGSVETSSSRSRSASVRACLIHTSRSSSCSARRMTSLLRS 60 Query 61 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLDAINA 120 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLL+AINA Sbjct 61 PLRIAALMICSSFSVGRKPMVAVMSTTIADVAQSYSNCSTHSGTPTPAFAASFLLEAINA 120 Query 121 PRVIAGRFASESVRFPAAAPHGSVPSRLPV 150 PRVIAGRFASESVRFPAAAPHGSVPSRLPV Sbjct 121 PRVIAGRFASESVRFPAAAPHGSVPSRLPV 150 >gi|328787338|ref|XP_003250926.1| PREDICTED: vacuolar protein sorting-associated protein 13C-like [Apis mellifera] Length=3382 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/52 (31%), Positives = 30/52 (58%), Gaps = 0/52 (0%) Query 35 SVRACLIHTSRSSSCSARRMTSLLRSPLRIAALMICSSFSVGRKPMVAVMST 86 S+++CL+ +R S S R++ +++SP R + S S+ P+V +M T Sbjct 1443 SLQSCLLQDTRKESESLRKLVLIIQSPARQIGMQSESCISISMSPIVDIMYT 1494 Lambda K H 0.318 0.124 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129459908798 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40