BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3100c

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610237|ref|NP_217616.1|  SsrA-binding protein [Mycobacterium...   323    5e-87
gi|1694889|emb|CAA49621.1|  SmpB [Mycobacterium tuberculosis H37Rv]    321    3e-86
gi|240168640|ref|ZP_04747299.1|  SsrA-binding protein [Mycobacter...   286    5e-76
gi|183981547|ref|YP_001849838.1|  ssRNA-binding protein SmpB [Myc...   285    2e-75
gi|15827281|ref|NP_301544.1|  SsrA-binding protein [Mycobacterium...   284    2e-75
gi|342861020|ref|ZP_08717669.1|  SsrA-binding protein [Mycobacter...   281    2e-74
gi|118617899|ref|YP_906231.1|  SsrA-binding protein [Mycobacteriu...   281    3e-74
gi|296169220|ref|ZP_06850873.1|  SsrA-binding protein [Mycobacter...   278    1e-73
gi|254820374|ref|ZP_05225375.1|  SsrA-binding protein [Mycobacter...   278    1e-73
gi|41409268|ref|NP_962104.1|  SsrA-binding protein [Mycobacterium...   275    1e-72
gi|333991480|ref|YP_004524094.1|  ssRNA-binding protein SmpB [Myc...   272    1e-71
gi|120402913|ref|YP_952742.1|  SsrA-binding protein [Mycobacteriu...   271    3e-71
gi|145225025|ref|YP_001135703.1|  SsrA-binding protein [Mycobacte...   268    2e-70
gi|108798583|ref|YP_638780.1|  SsrA-binding protein [Mycobacteriu...   266    6e-70
gi|118473405|ref|YP_886451.1|  SsrA-binding protein [Mycobacteriu...   265    2e-69
gi|169630554|ref|YP_001704203.1|  SsrA-binding protein [Mycobacte...   257    3e-67
gi|226365875|ref|YP_002783658.1|  SsrA-binding protein [Rhodococc...   247    3e-64
gi|312140586|ref|YP_004007922.1|  smpb protein [Rhodococcus equi ...   245    1e-63
gi|111023371|ref|YP_706343.1|  SsrA-binding protein [Rhodococcus ...   245    1e-63
gi|333921380|ref|YP_004494961.1|  SsrA-binding protein [Amycolici...   244    3e-63
gi|296140710|ref|YP_003647953.1|  SsrA-binding protein [Tsukamure...   244    3e-63
gi|226305799|ref|YP_002765759.1|  SsrA-binding protein [Rhodococc...   242    1e-62
gi|319951467|ref|ZP_08025276.1|  SsrA-binding protein [Dietzia ci...   241    2e-62
gi|262203330|ref|YP_003274538.1|  SsrA-binding protein [Gordonia ...   241    3e-62
gi|54026453|ref|YP_120695.1|  SsrA-binding protein [Nocardia farc...   241    4e-62
gi|334563507|ref|ZP_08516498.1|  SsrA-binding protein [Corynebact...   239    7e-62
gi|331695048|ref|YP_004331287.1|  SsrA-binding protein [Pseudonoc...   237    4e-61
gi|257054831|ref|YP_003132663.1|  SsrA-binding protein [Saccharom...   231    2e-59
gi|296394148|ref|YP_003659032.1|  SsrA-binding protein [Segnilipa...   231    3e-59
gi|326383349|ref|ZP_08205037.1|  SsrA-binding protein [Gordonia n...   229    7e-59
gi|317507099|ref|ZP_07964860.1|  SsrA-binding protein [Segnilipar...   229    7e-59
gi|237786015|ref|YP_002906720.1|  SsrA-binding protein [Corynebac...   229    1e-58
gi|325001485|ref|ZP_08122597.1|  SsrA-binding protein [Pseudonoca...   229    1e-58
gi|302524560|ref|ZP_07276902.1|  SsrA-binding protein [Streptomyc...   229    1e-58
gi|225020769|ref|ZP_03709961.1|  hypothetical protein CORMATOL_00...   228    2e-58
gi|260579722|ref|ZP_05847581.1|  SsrA-binding protein [Corynebact...   227    4e-58
gi|68535528|ref|YP_250233.1|  SsrA-binding protein [Corynebacteri...   227    4e-58
gi|340793658|ref|YP_004759121.1|  hypothetical protein CVAR_0698 ...   225    1e-57
gi|300783179|ref|YP_003763470.1|  SsrA-binding protein [Amycolato...   224    3e-57
gi|213966063|ref|ZP_03394251.1|  SsrA-binding protein [Corynebact...   223    6e-57
gi|336324939|ref|YP_004604905.1|  tmRNA-binding protein [Coryneba...   223    6e-57
gi|337290245|ref|YP_004629266.1|  hypothetical protein CULC22_006...   223    7e-57
gi|38233356|ref|NP_939123.1|  SsrA-binding protein [Corynebacteri...   219    8e-56
gi|300858000|ref|YP_003782983.1|  hypothetical protein cpfrc_0058...   219    1e-55
gi|300781766|ref|ZP_07091620.1|  SsrA-binding protein [Corynebact...   219    1e-55
gi|134097704|ref|YP_001103365.1|  SsrA-binding protein [Saccharop...   219    1e-55
gi|25027370|ref|NP_737424.1|  SsrA-binding protein [Corynebacteri...   218    2e-55
gi|172041180|ref|YP_001800894.1|  SsrA-binding protein [Corynebac...   218    2e-55
gi|19552031|ref|NP_600033.1|  SsrA-binding protein [Corynebacteri...   215    2e-54
gi|117928935|ref|YP_873486.1|  SsrA-binding protein [Acidothermus...   214    3e-54


>gi|15610237|ref|NP_217616.1| SsrA-binding protein [Mycobacterium tuberculosis H37Rv]
 gi|15842671|ref|NP_337708.1| SsrA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31794279|ref|NP_856772.1| SsrA-binding protein [Mycobacterium bovis AF2122/97]
 85 more sequence titles
 
gi|121638985|ref|YP_979209.1| SsrA-binding protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662954|ref|YP_001284477.1| SsrA-binding protein [Mycobacterium tuberculosis H37Ra]
 gi|148824292|ref|YP_001289046.1| SsrA-binding protein [Mycobacterium tuberculosis F11]
 gi|167969707|ref|ZP_02551984.1| SsrA-binding protein [Mycobacterium tuberculosis H37Ra]
 gi|224991477|ref|YP_002646166.1| SsrA-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797799|ref|YP_003030800.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 1435]
 gi|254233724|ref|ZP_04927049.1| Ssra-binding protein smpB [Mycobacterium tuberculosis C]
 gi|254365728|ref|ZP_04981773.1| Ssra-binding protein smpB [Mycobacterium tuberculosis str. Haarlem]
 gi|254552180|ref|ZP_05142627.1| SsrA-binding protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289444664|ref|ZP_06434408.1| SsrA-binding protein [Mycobacterium tuberculosis T46]
 gi|289448779|ref|ZP_06438523.1| ssra-binding protein smpB [Mycobacterium tuberculosis CPHL_A]
 gi|289553108|ref|ZP_06442318.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 605]
 gi|289571307|ref|ZP_06451534.1| ssra-binding protein smpB [Mycobacterium tuberculosis T17]
 gi|289575812|ref|ZP_06456039.1| ssra-binding protein smpB [Mycobacterium tuberculosis K85]
 gi|289746910|ref|ZP_06506288.1| small protein B [Mycobacterium tuberculosis 02_1987]
 gi|289751776|ref|ZP_06511154.1| ssra-binding protein smpB [Mycobacterium tuberculosis T92]
 gi|289755218|ref|ZP_06514596.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis EAS054]
 gi|289759226|ref|ZP_06518604.1| ssra-binding protein smpB [Mycobacterium tuberculosis T85]
 gi|289763279|ref|ZP_06522657.1| ssra-binding protein smpB [Mycobacterium tuberculosis GM 1503]
 gi|294993393|ref|ZP_06799084.1| SsrA-binding protein [Mycobacterium tuberculosis 210]
 gi|297635735|ref|ZP_06953515.1| SsrA-binding protein [Mycobacterium tuberculosis KZN 4207]
 gi|297732734|ref|ZP_06961852.1| SsrA-binding protein [Mycobacterium tuberculosis KZN R506]
 gi|298526573|ref|ZP_07013982.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306777410|ref|ZP_07415747.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu001]
 gi|306781313|ref|ZP_07419650.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu002]
 gi|306785955|ref|ZP_07424277.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu003]
 gi|306790309|ref|ZP_07428631.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu004]
 gi|306794803|ref|ZP_07433105.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu005]
 gi|306799045|ref|ZP_07437347.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu006]
 gi|306804889|ref|ZP_07441557.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu008]
 gi|306809080|ref|ZP_07445748.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu007]
 gi|306969182|ref|ZP_07481843.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu009]
 gi|306973526|ref|ZP_07486187.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu010]
 gi|307081236|ref|ZP_07490406.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu011]
 gi|307085835|ref|ZP_07494948.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu012]
 gi|313660066|ref|ZP_07816946.1| SsrA-binding protein [Mycobacterium tuberculosis KZN V2475]
 gi|339633108|ref|YP_004724750.1| SSRA-binding protein SMPB [Mycobacterium africanum GM041182]
 gi|340628091|ref|YP_004746543.1| putative SSRA-binding protein SMPB [Mycobacterium canettii CIPT 
140010059]
 gi|61247736|sp|P0A612.1|SSRP_MYCTU RecName: Full=SsrA-binding protein
 gi|61247737|sp|P0A613.1|SSRP_MYCBO RecName: Full=SsrA-binding protein
 gi|166223227|sp|A1KN98.1|SSRP_MYCBP RecName: Full=SsrA-binding protein
 gi|166223229|sp|A5U7B5.1|SSRP_MYCTA RecName: Full=SsrA-binding protein
 gi|254778371|sp|C1AGL9.1|SSRP_MYCBT RecName: Full=SsrA-binding protein
 gi|2076675|emb|CAB08390.1| PROBABLE SSRA-BINDING PROTEIN SMPB [Mycobacterium tuberculosis 
H37Rv]
 gi|13882990|gb|AAK47522.1| small protein B [Mycobacterium tuberculosis CDC1551]
 gi|31619874|emb|CAD96814.1| PROBABLE SSRA-BINDING PROTEIN SMPB [Mycobacterium bovis AF2122/97]
 gi|121494633|emb|CAL73114.1| Probable ssrA-binding protein smpB [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|124599253|gb|EAY58357.1| Ssra-binding protein smpB [Mycobacterium tuberculosis C]
 gi|134151241|gb|EBA43286.1| Ssra-binding protein smpB [Mycobacterium tuberculosis str. Haarlem]
 gi|148507106|gb|ABQ74915.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis H37Ra]
 gi|148722819|gb|ABR07444.1| Ssra-binding protein smpB [Mycobacterium tuberculosis F11]
 gi|224774592|dbj|BAH27398.1| SsrA-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319302|gb|ACT23905.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 1435]
 gi|289417583|gb|EFD14823.1| SsrA-binding protein [Mycobacterium tuberculosis T46]
 gi|289421737|gb|EFD18938.1| ssra-binding protein smpB [Mycobacterium tuberculosis CPHL_A]
 gi|289437740|gb|EFD20233.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 605]
 gi|289540243|gb|EFD44821.1| ssra-binding protein smpB [Mycobacterium tuberculosis K85]
 gi|289545061|gb|EFD48709.1| ssra-binding protein smpB [Mycobacterium tuberculosis T17]
 gi|289687438|gb|EFD54926.1| small protein B [Mycobacterium tuberculosis 02_1987]
 gi|289692363|gb|EFD59792.1| ssra-binding protein smpB [Mycobacterium tuberculosis T92]
 gi|289695805|gb|EFD63234.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis EAS054]
 gi|289710785|gb|EFD74801.1| ssra-binding protein smpB [Mycobacterium tuberculosis GM 1503]
 gi|289714790|gb|EFD78802.1| ssra-binding protein smpB [Mycobacterium tuberculosis T85]
 gi|298496367|gb|EFI31661.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308214298|gb|EFO73697.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu001]
 gi|308325950|gb|EFP14801.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu002]
 gi|308329475|gb|EFP18326.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu003]
 gi|308333321|gb|EFP22172.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu004]
 gi|308336975|gb|EFP25826.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu005]
 gi|308340789|gb|EFP29640.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu006]
 gi|308344657|gb|EFP33508.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu007]
 gi|308348607|gb|EFP37458.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu008]
 gi|308353332|gb|EFP42183.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu009]
 gi|308357166|gb|EFP46017.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu010]
 gi|308361117|gb|EFP49968.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu011]
 gi|308364652|gb|EFP53503.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu012]
 gi|323718331|gb|EGB27509.1| ssra-binding protein smpB [Mycobacterium tuberculosis CDC1551A]
 gi|326902677|gb|EGE49610.1| ssra-binding protein smpB [Mycobacterium tuberculosis W-148]
 gi|328457578|gb|AEB03001.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 4207]
 gi|339295935|gb|AEJ48046.1| SsrA-binding protein [Mycobacterium tuberculosis CCDC5079]
 gi|339299547|gb|AEJ51657.1| SsrA-binding protein [Mycobacterium tuberculosis CCDC5180]
 gi|339332464|emb|CCC28177.1| putative SSRA-binding protein SMPB [Mycobacterium africanum GM041182]
 gi|340006281|emb|CCC45458.1| putative SSRA-binding protein SMPB [Mycobacterium canettii CIPT 
140010059]
 gi|341603024|emb|CCC65702.1| probable ssrA-binding protein smpB [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220933|gb|AEN01564.1| SsrA-binding protein [Mycobacterium tuberculosis CTRI-2]
Length=160

 Score =  323 bits (828),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 159/160 (99%), Positives = 160/160 (100%), Gaps = 0/160 (0%)

Query  1    VSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60
            +SKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE
Sbjct  1    MSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60

Query  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120
            VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV
Sbjct  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120

Query  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT
Sbjct  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160


>gi|1694889|emb|CAA49621.1| SmpB [Mycobacterium tuberculosis H37Rv]
Length=160

 Score =  321 bits (822),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 158/160 (99%), Positives = 159/160 (99%), Gaps = 0/160 (0%)

Query  1    VSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60
            +SKSSRGGRQIVA NRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE
Sbjct  1    MSKSSRGGRQIVARNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60

Query  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120
            VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV
Sbjct  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120

Query  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT
Sbjct  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160


>gi|240168640|ref|ZP_04747299.1| SsrA-binding protein [Mycobacterium kansasii ATCC 12478]
Length=168

 Score =  286 bits (733),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 134/152 (89%), Positives = 146/152 (97%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+I+A+NRKARHNYSIIEVFEAG+ALQGTEVKSLREG ASL D+FATIDDGE+WLRN H
Sbjct  16   GRKIIATNRKARHNYSIIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLH  75

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY+HGSWTNHEPRRNRKLLLHRRQIDTL+GK+REGNFALVPLSLYF EGKVKVE+ALA
Sbjct  76   IPEYQHGSWTNHEPRRNRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTEGKVKVEIALA  135

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            RGK A DKRQD+ARRDAQREV+RELGRRAKGM
Sbjct  136  RGKHAHDKRQDLARRDAQREVIRELGRRAKGM  167


>gi|183981547|ref|YP_001849838.1| ssRNA-binding protein SmpB [Mycobacterium marinum M]
 gi|183174873|gb|ACC39983.1| ssRNA-binding protein SmpB [Mycobacterium marinum M]
Length=168

 Score =  285 bits (728),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 134/154 (88%), Positives = 146/154 (95%), Gaps = 0/154 (0%)

Query  6    RGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRN  65
            +GG++I+A+NRKARHNYSIIEVFEAGVALQGTEVKSLREG ASL D+FAT+DDGEVWLRN
Sbjct  14   QGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLREGHASLVDAFATVDDGEVWLRN  73

Query  66   AHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELA  125
             HIPEY HG+WTNHEPRRNRKLLLHRRQIDTL GKIREGNFALVPLS+YF +GKVKVELA
Sbjct  74   LHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLSMYFLDGKVKVELA  133

Query  126  LARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            LARGK A DKRQD+ARRDAQREV+RELGRRAKGM
Sbjct  134  LARGKHAHDKRQDLARRDAQREVIRELGRRAKGM  167


>gi|15827281|ref|NP_301544.1| SsrA-binding protein [Mycobacterium leprae TN]
 gi|221229759|ref|YP_002503175.1| SsrA-binding protein [Mycobacterium leprae Br4923]
 gi|3334332|sp|O32881.1|SSRP_MYCLE RecName: Full=SsrA-binding protein
 gi|254778372|sp|B8ZUV3.1|SSRP_MYCLB RecName: Full=SsrA-binding protein
 gi|2326689|emb|CAB11000.1| small protein B [Mycobacterium leprae]
 gi|13092830|emb|CAC30180.1| putative SsrA-binding protein [Mycobacterium leprae]
 gi|219932866|emb|CAR70765.1| putative SsrA-binding protein [Mycobacterium leprae Br4923]
Length=160

 Score =  284 bits (727),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 135/159 (85%), Positives = 151/159 (95%), Gaps = 0/159 (0%)

Query  1    VSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60
            ++++ RGG+QIVA+NRKARH+Y+IIE+FEAGVAL GTEVKSLREG ASLAD+FAT+D GE
Sbjct  1    MARNPRGGKQIVATNRKARHDYAIIELFEAGVALLGTEVKSLREGHASLADAFATVDSGE  60

Query  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120
            VWLRN HIPEY+HGSWTNH+PRRNRKLLLHRRQIDTLVGKIR+GN ALVPLSLYFAEGKV
Sbjct  61   VWLRNMHIPEYQHGSWTNHDPRRNRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFAEGKV  120

Query  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            KVELALARGK+  DKRQDMARRDAQREV+RELGRRAKGM
Sbjct  121  KVELALARGKKLHDKRQDMARRDAQREVIRELGRRAKGM  159


>gi|342861020|ref|ZP_08717669.1| SsrA-binding protein [Mycobacterium colombiense CECT 3035]
 gi|342131464|gb|EGT84734.1| SsrA-binding protein [Mycobacterium colombiense CECT 3035]
Length=169

 Score =  281 bits (720),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 132/154 (86%), Positives = 149/154 (97%), Gaps = 0/154 (0%)

Query  7    GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNA  66
            G +Q++A+NRKARHNYSIIE+FEAGV+LQGTEVKSLR+GQASLAD+FATIDDGEVWLRN 
Sbjct  16   GSKQVIATNRKARHNYSIIELFEAGVSLQGTEVKSLRQGQASLADAFATIDDGEVWLRNL  75

Query  67   HIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELAL  126
            +IPEYRHGSWTNHEPRRNRKLLLHR+QID LVGKIR+GN AL+PLSLYF+EGKVKVELAL
Sbjct  76   YIPEYRHGSWTNHEPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSEGKVKVELAL  135

Query  127  ARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            ARGK+A DKRQDMA+RDAQREV+RE+GRRAKGMT
Sbjct  136  ARGKRAYDKRQDMAQRDAQREVVREMGRRAKGMT  169


>gi|118617899|ref|YP_906231.1| SsrA-binding protein [Mycobacterium ulcerans Agy99]
 gi|166223230|sp|A0PQZ1.1|SSRP_MYCUA RecName: Full=SsrA-binding protein
 gi|118570009|gb|ABL04760.1| ssRNA-binding protein SmpB [Mycobacterium ulcerans Agy99]
Length=168

 Score =  281 bits (718),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 133/154 (87%), Positives = 145/154 (95%), Gaps = 0/154 (0%)

Query  6    RGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRN  65
            +GG++I+A+NRKARHNYSIIEVFEAGVALQGTEVKSLRE  ASL D+FAT+DDGEVWLRN
Sbjct  14   QGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLRERHASLVDAFATVDDGEVWLRN  73

Query  66   AHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELA  125
             HIPEY HG+WTNHEPRRNRKLLLHRRQIDTL GKIREGNFALVPLS+YF +GKVKVELA
Sbjct  74   LHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLSMYFLDGKVKVELA  133

Query  126  LARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            LARGK A DKRQD+ARRDAQREV+RELGRRAKGM
Sbjct  134  LARGKHAHDKRQDLARRDAQREVIRELGRRAKGM  167


>gi|296169220|ref|ZP_06850873.1| SsrA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896118|gb|EFG75785.1| SsrA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=169

 Score =  278 bits (712),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 133/155 (86%), Positives = 146/155 (95%), Gaps = 0/155 (0%)

Query  6    RGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRN  65
            RG +QIVA+NRKARHNYSI+E FEAGVALQGTEVKSLR G ASL D+FAT+DDGEVWLRN
Sbjct  15   RGSKQIVATNRKARHNYSILEEFEAGVALQGTEVKSLRAGHASLTDAFATVDDGEVWLRN  74

Query  66   AHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELA  125
             +IPEYRHGSWTNHEPRRNRKLLLHR+QID LVGKIR+GN ALVP+SLYF+EGKVKVELA
Sbjct  75   LYIPEYRHGSWTNHEPRRNRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSEGKVKVELA  134

Query  126  LARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            LARGK+A DKRQDMARRDAQREV+RELGRRAKGM+
Sbjct  135  LARGKRAHDKRQDMARRDAQREVVRELGRRAKGMS  169


>gi|254820374|ref|ZP_05225375.1| SsrA-binding protein [Mycobacterium intracellulare ATCC 13950]
Length=169

 Score =  278 bits (712),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 133/154 (87%), Positives = 147/154 (96%), Gaps = 0/154 (0%)

Query  7    GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNA  66
            G +Q+VA+NRKARHNYSIIE FEAGVALQGTEVKSLREGQASLAD+FATIDDGEVWLRN 
Sbjct  16   GSKQVVATNRKARHNYSIIESFEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNL  75

Query  67   HIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELAL  126
            +I EY+HGSWTNH+PRRNRKLLLHR+QID LVGKIR+GN AL+PLSLYF+EGKVKVELAL
Sbjct  76   YIAEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSEGKVKVELAL  135

Query  127  ARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            ARGK+A DKRQDMA+RDAQREV+RELGRRAKGMT
Sbjct  136  ARGKRAYDKRQDMAQRDAQREVVRELGRRAKGMT  169


>gi|41409268|ref|NP_962104.1| SsrA-binding protein [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254776424|ref|ZP_05217940.1| SsrA-binding protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|61216569|sp|Q73V46.1|SSRP_MYCPA RecName: Full=SsrA-binding protein
 gi|41398088|gb|AAS05718.1| SmpB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336459376|gb|EGO38319.1| SsrA-binding protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=169

 Score =  275 bits (704),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 129/153 (85%), Positives = 146/153 (96%), Gaps = 0/153 (0%)

Query  7    GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNA  66
            G +QI+A+NRKARHNYSIIE +EAGVALQGTEVKSLREGQASLAD+FATIDDGEVWLRN 
Sbjct  16   GSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNL  75

Query  67   HIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELAL  126
            +IPEY+HGSWTNH+PRRNRKLLLHR+QID LVGKIR+GN AL+PLSLYF+EGKVKVELAL
Sbjct  76   YIPEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSEGKVKVELAL  135

Query  127  ARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            ARGK+A DKRQD+A+RDAQREV+R+LGRR KGM
Sbjct  136  ARGKKAYDKRQDLAQRDAQREVVRQLGRRTKGM  168


>gi|333991480|ref|YP_004524094.1| ssRNA-binding protein SmpB [Mycobacterium sp. JDM601]
 gi|333487448|gb|AEF36840.1| ssRNA-binding protein SmpB [Mycobacterium sp. JDM601]
Length=167

 Score =  272 bits (695),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 127/155 (82%), Positives = 141/155 (91%), Gaps = 0/155 (0%)

Query  6    RGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRN  65
            +  +Q+VASNRKARHNYSI++V+EAGV L GTEVKSLR GQASL D+FAT+DDGEVWLRN
Sbjct  13   QAAKQVVASNRKARHNYSILDVYEAGVVLLGTEVKSLRAGQASLVDAFATVDDGEVWLRN  72

Query  66   AHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELA  125
             HIPEYRHGSWTNH+PRR RKLLLHRRQID L+GKIR+GN  LVPLS+YF+EGKVKVELA
Sbjct  73   MHIPEYRHGSWTNHDPRRTRKLLLHRRQIDMLIGKIRDGNLTLVPLSVYFSEGKVKVELA  132

Query  126  LARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            LARGKQA DKRQD+ARRDAQREV R LGRRAKGMT
Sbjct  133  LARGKQAHDKRQDLARRDAQREVTRALGRRAKGMT  167


>gi|120402913|ref|YP_952742.1| SsrA-binding protein [Mycobacterium vanbaalenii PYR-1]
 gi|189046834|sp|A1T6D6.1|SSRP_MYCVP RecName: Full=SsrA-binding protein
 gi|119955731|gb|ABM12736.1| SsrA-binding protein [Mycobacterium vanbaalenii PYR-1]
Length=165

 Score =  271 bits (692),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 125/151 (83%), Positives = 138/151 (92%), Gaps = 0/151 (0%)

Query  10   QIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIP  69
            Q+VA+NRKARHNYSI++ +EAG+AL GTEVKSLREGQASLAD+FAT+DDGE+WLRN HIP
Sbjct  14   QVVATNRKARHNYSILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIP  73

Query  70   EYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARG  129
            EY HG+WTNH PRRNRKLL+HRR+ID LVGKIR+GN  LVPLSLYF  GKVKVELALARG
Sbjct  74   EYHHGTWTNHAPRRNRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFTGGKVKVELALARG  133

Query  130  KQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            KQA DKRQDMARRDAQREV RELGRR KGMT
Sbjct  134  KQAHDKRQDMARRDAQREVTRELGRRVKGMT  164


>gi|145225025|ref|YP_001135703.1| SsrA-binding protein [Mycobacterium gilvum PYR-GCK]
 gi|315445394|ref|YP_004078273.1| SsrA-binding protein [Mycobacterium sp. Spyr1]
 gi|189046833|sp|A4TDF4.1|SSRP_MYCGI RecName: Full=SsrA-binding protein
 gi|145217511|gb|ABP46915.1| SsrA-binding protein [Mycobacterium gilvum PYR-GCK]
 gi|315263697|gb|ADU00439.1| SsrA-binding protein [Mycobacterium sp. Spyr1]
Length=165

 Score =  268 bits (686),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 126/150 (84%), Positives = 136/150 (91%), Gaps = 0/150 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            +VASNRKARHNYSI+E +EAGVAL GTEVKSLR+G ASLAD+FAT+DDGE+WLRN HIPE
Sbjct  15   VVASNRKARHNYSILETYEAGVALVGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPE  74

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            Y HGSWTNH PRRNRKLL+HRR+ID LVGKIR+GN  LVPLSLYF  GKVKVELALARGK
Sbjct  75   YHHGSWTNHAPRRNRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFTGGKVKVELALARGK  134

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGMT  160
            QA DKRQDMARRDAQREV RELGRR KGMT
Sbjct  135  QAHDKRQDMARRDAQREVTRELGRRVKGMT  164


>gi|108798583|ref|YP_638780.1| SsrA-binding protein [Mycobacterium sp. MCS]
 gi|119867683|ref|YP_937635.1| SsrA-binding protein [Mycobacterium sp. KMS]
 gi|126434182|ref|YP_001069873.1| SsrA-binding protein [Mycobacterium sp. JLS]
 6 more sequence titles
 
gi|122977206|sp|Q1BBL0.1|SSRP_MYCSS RecName: Full=SsrA-binding protein
 gi|187611486|sp|A3PWV5.1|SSRP_MYCSJ RecName: Full=SsrA-binding protein
 gi|187611487|sp|A1UDD7.1|SSRP_MYCSK RecName: Full=SsrA-binding protein
 gi|108769002|gb|ABG07724.1| SsrA-binding protein [Mycobacterium sp. MCS]
 gi|119693772|gb|ABL90845.1| SsrA-binding protein [Mycobacterium sp. KMS]
 gi|126233982|gb|ABN97382.1| SsrA-binding protein [Mycobacterium sp. JLS]
Length=168

 Score =  266 bits (681),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 122/151 (81%), Positives = 141/151 (94%), Gaps = 0/151 (0%)

Query  10   QIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIP  69
            Q+VASNR+ARHNY+I++ +EAG+AL GTEVKSLR+GQASLAD+FAT+DDGE+WLRN HIP
Sbjct  18   QVVASNRRARHNYAILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLRNLHIP  77

Query  70   EYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARG  129
            EY+HGSWTNH PRRNRKLLLHRR+ID L+GKIR+GN  LVPLSLYF  GKVKVELALARG
Sbjct  78   EYQHGSWTNHAPRRNRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTGGKVKVELALARG  137

Query  130  KQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            KQA DKRQD+ARRDA+REV+RELGRRAKGM+
Sbjct  138  KQAHDKRQDLARRDAEREVVRELGRRAKGMS  168


>gi|118473405|ref|YP_886451.1| SsrA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|166223228|sp|A0QU63.1|SSRP_MYCS2 RecName: Full=SsrA-binding protein
 gi|118174692|gb|ABK75588.1| SsrA-binding protein [Mycobacterium smegmatis str. MC2 155]
Length=161

 Score =  265 bits (677),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 120/156 (77%), Positives = 140/156 (90%), Gaps = 0/156 (0%)

Query  3    KSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVW  62
            KS+    ++VA+NRKARHNY+I++ +EAG+ L GTEVKSLREGQASLAD+FAT+DDGE+W
Sbjct  4    KSASSNNKVVATNRKARHNYTILDTYEAGIVLMGTEVKSLREGQASLADAFATVDDGEIW  63

Query  63   LRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKV  122
            LRN HI EY HG+WTNH PRRNRKLLLHR+QID L+GKIR+GN  LVPLS+YF +GKVKV
Sbjct  64   LRNVHIAEYHHGTWTNHAPRRNRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTDGKVKV  123

Query  123  ELALARGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            ELALARGKQA DKRQD+ARRDAQREV+RELGRRAKG
Sbjct  124  ELALARGKQAHDKRQDLARRDAQREVIRELGRRAKG  159


>gi|169630554|ref|YP_001704203.1| SsrA-binding protein [Mycobacterium abscessus ATCC 19977]
 gi|238688782|sp|B1MEU3.1|SSRP_MYCA9 RecName: Full=SsrA-binding protein
 gi|169242521|emb|CAM63549.1| SsrA-binding protein [Mycobacterium abscessus]
Length=159

 Score =  257 bits (657),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 120/159 (76%), Positives = 138/159 (87%), Gaps = 0/159 (0%)

Query  1    VSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60
            +SK    GR+++A+NRKARHNYSII+V+EAGV L GTEVK+LREG+ASL D+FAT+DDGE
Sbjct  1    MSKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGE  60

Query  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120
            VWLR  HIP+Y HG+WTNH P RNRKLLLHR QID LVGK R+GN  LVPLSLYF +GKV
Sbjct  61   VWLRGVHIPQYDHGTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLDGKV  120

Query  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            KVELALARGKQA DKRQD+A+RDA RE+ RELGRRAKGM
Sbjct  121  KVELALARGKQAHDKRQDIAKRDASREITRELGRRAKGM  159


>gi|226365875|ref|YP_002783658.1| SsrA-binding protein [Rhodococcus opacus B4]
 gi|226244365|dbj|BAH54713.1| SsrA-binding protein [Rhodococcus opacus B4]
Length=157

 Score =  247 bits (631),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 113/152 (75%), Positives = 136/152 (90%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A+NRKARHNY+I++V+EAG+AL GTEVKSLREG+ASL D+FAT+DDGEVWLR+ H
Sbjct  5    GRKVIATNRKARHNYTILDVYEAGIALVGTEVKSLREGKASLVDAFATVDDGEVWLRSLH  64

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+WTNH PRR RKLLLH+R+I+ LVGK REGN  LVPLS+YF++GKVKVELALA
Sbjct  65   IPEYTQGTWTNHSPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFSDGKVKVELALA  124

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            +GKQ  DKRQD+ARR A+REV RELGRR KGM
Sbjct  125  KGKQDYDKRQDLARRTAEREVTRELGRRVKGM  156


>gi|312140586|ref|YP_004007922.1| smpb protein [Rhodococcus equi 103S]
 gi|325675792|ref|ZP_08155476.1| SsrA-binding protein [Rhodococcus equi ATCC 33707]
 gi|311889925|emb|CBH49242.1| SmpB protein [Rhodococcus equi 103S]
 gi|325553763|gb|EGD23441.1| SsrA-binding protein [Rhodococcus equi ATCC 33707]
Length=157

 Score =  245 bits (626),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 134/152 (89%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A+NRKARHNY+II+ +EAGVAL GTEVKSLREG+ASL D+FAT+DDGEVWLR  H
Sbjct  5    GRKVIATNRKARHNYTIIDTYEAGVALVGTEVKSLREGKASLVDAFATVDDGEVWLRGLH  64

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+WTNH PRR RKLLLH+R+I+ LVGK REGN  LVPLS+YF++GKVKVELALA
Sbjct  65   IPEYARGTWTNHAPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFSDGKVKVELALA  124

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            +GKQ  DKRQD+ARR A+REV RELGRR KGM
Sbjct  125  KGKQDYDKRQDLARRTAEREVTRELGRRVKGM  156


>gi|111023371|ref|YP_706343.1| SsrA-binding protein [Rhodococcus jostii RHA1]
 gi|123339713|sp|Q0S2Q1.1|SSRP_RHOSR RecName: Full=SsrA-binding protein
 gi|110822901|gb|ABG98185.1| SsrA-binding protein [Rhodococcus jostii RHA1]
Length=157

 Score =  245 bits (626),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 112/152 (74%), Positives = 136/152 (90%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A+NRKARHNY+I++V+EAG+AL GTEVKSLREG+ASL D+FAT+DDGEVWLR+ H
Sbjct  5    GRKVIATNRKARHNYTILDVYEAGIALVGTEVKSLREGKASLVDAFATVDDGEVWLRSLH  64

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+WTNH PRR RKLLLH+++I+ LVGK REGN  LVPLS+YF++GKVKVELALA
Sbjct  65   IPEYTQGTWTNHAPRRTRKLLLHKQEIEHLVGKTREGNQTLVPLSMYFSDGKVKVELALA  124

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            +GKQ  DKRQD+ARR A+REV RELGRR KGM
Sbjct  125  KGKQDYDKRQDLARRTAEREVTRELGRRVKGM  156


>gi|333921380|ref|YP_004494961.1| SsrA-binding protein [Amycolicicoccus subflavus DQS3-9A1]
 gi|333483601|gb|AEF42161.1| SsrA-binding protein [Amycolicicoccus subflavus DQS3-9A1]
Length=176

 Score =  244 bits (624),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 112/153 (74%), Positives = 134/153 (88%), Gaps = 0/153 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++ASN+KARHNY+II+V+EAGV L GTEVK+LREG+ASL D++AT+DDGE+WLR  H
Sbjct  23   GRKVIASNKKARHNYAIIDVYEAGVVLLGTEVKTLREGKASLVDAYATVDDGEIWLRGLH  82

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  GSWTNHEPRR RKLLLH+R+I+ LVGK REG   LVPLS+YF++GKVKVELALA
Sbjct  83   IPEYGQGSWTNHEPRRTRKLLLHKREIEHLVGKTREGQLTLVPLSMYFSDGKVKVELALA  142

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            RGKQ  DKRQD+ARR A+RE  RELGRR KGM+
Sbjct  143  RGKQLHDKRQDLARRTAEREATRELGRRIKGMS  175


>gi|296140710|ref|YP_003647953.1| SsrA-binding protein [Tsukamurella paurometabola DSM 20162]
 gi|296028844|gb|ADG79614.1| SsrA-binding protein [Tsukamurella paurometabola DSM 20162]
Length=159

 Score =  244 bits (623),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 112/152 (74%), Positives = 135/152 (89%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR ++ASNRKARHNY+I++ FEAGV L GTEVK+LREG+ASL D++ATIDDGEVWLR  H
Sbjct  6    GRSVIASNRKARHNYAILDTFEAGVVLVGTEVKALREGKASLVDAYATIDDGEVWLRGLH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY +GSWTNH PRR RKLL+HRR+ID+L GK+REGN  LVPLS+YF++G+VKVELALA
Sbjct  66   IPEYGNGSWTNHTPRRTRKLLMHRREIDSLTGKVREGNQTLVPLSMYFSDGRVKVELALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            +GKQ  DKRQD+ARR A+RE++RELGRR KGM
Sbjct  126  KGKQDYDKRQDIARRTAERELVRELGRRVKGM  157


>gi|226305799|ref|YP_002765759.1| SsrA-binding protein [Rhodococcus erythropolis PR4]
 gi|229490993|ref|ZP_04384826.1| SsrA-binding protein [Rhodococcus erythropolis SK121]
 gi|226184916|dbj|BAH33020.1| SsrA-binding protein [Rhodococcus erythropolis PR4]
 gi|229322109|gb|EEN87897.1| SsrA-binding protein [Rhodococcus erythropolis SK121]
Length=157

 Score =  242 bits (617),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 111/152 (74%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A+NRKARHNY+II+ +EAG+AL GTEVKSLREG+ASL D+FAT+D+GEVWLR+ H
Sbjct  5    GRKVIATNRKARHNYTIIDTYEAGIALVGTEVKSLREGKASLVDAFATVDNGEVWLRSLH  64

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+W NH PRR RKLLLH+R+I+ LVGK REGN  LVPLS+YF +GKVKVELALA
Sbjct  65   IPEYTQGTWNNHSPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFNDGKVKVELALA  124

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            +GKQ  DKRQDMA+R A+REV RELGRR KGM
Sbjct  125  KGKQDYDKRQDMAKRTAEREVTRELGRRIKGM  156


>gi|319951467|ref|ZP_08025276.1| SsrA-binding protein [Dietzia cinnamea P4]
 gi|319434859|gb|EFV90170.1| SsrA-binding protein [Dietzia cinnamea P4]
Length=169

 Score =  241 bits (616),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 110/150 (74%), Positives = 132/150 (88%), Gaps = 0/150 (0%)

Query  10   QIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIP  69
             IVASNRKARH++ I++ +EAG+AL GTE+KS+REG+ASL D+FAT+DDGEVWLR  HIP
Sbjct  18   SIVASNRKARHDFHILDTYEAGIALVGTEIKSMREGKASLVDAFATVDDGEVWLRGLHIP  77

Query  70   EYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARG  129
            EY HGSWTNH P+R RKLLLHRR+ID+LVGK+R+GN  LVPLSLYF  G+VKVELA+ARG
Sbjct  78   EYSHGSWTNHAPKRARKLLLHRREIDSLVGKVRDGNATLVPLSLYFVNGRVKVELAVARG  137

Query  130  KQARDKRQDMARRDAQREVLRELGRRAKGM  159
            KQA DKRQD+ARR A+RE +RELGR+ KGM
Sbjct  138  KQAHDKRQDIARRTAEREAVRELGRKIKGM  167


>gi|262203330|ref|YP_003274538.1| SsrA-binding protein [Gordonia bronchialis DSM 43247]
 gi|262086677|gb|ACY22645.1| SsrA-binding protein [Gordonia bronchialis DSM 43247]
Length=157

 Score =  241 bits (615),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 132/152 (87%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR  +A+NRKARH+Y+I++ FEAG+AL GTEVKSLR G+ASL D+FATIDDGEVWL   H
Sbjct  6    GRTAIATNRKARHDYAILDTFEAGIALVGTEVKSLRAGKASLVDAFATIDDGEVWLHALH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY +GSWTNH  RR RKLL+HRR+IDTL+GKIR+GN  LVPLS+YF +G+VKVELALA
Sbjct  66   IPEYGNGSWTNHTVRRKRKLLMHRREIDTLIGKIRDGNLTLVPLSMYFNDGRVKVELALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            RGKQA DKRQD+ARR AQREV RELGRR KGM
Sbjct  126  RGKQAHDKRQDIARRTAQREVERELGRRVKGM  157


>gi|54026453|ref|YP_120695.1| SsrA-binding protein [Nocardia farcinica IFM 10152]
 gi|61216440|sp|Q5YR60.1|SSRP_NOCFA RecName: Full=SsrA-binding protein
 gi|54017961|dbj|BAD59331.1| putative small protein B [Nocardia farcinica IFM 10152]
Length=160

 Score =  241 bits (614),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 110/152 (73%), Positives = 134/152 (89%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A+NR+ARHNY+I++ +EAG+ L GTEVKSLREG+ASL D+FAT+D+GEVWLR  H
Sbjct  8    GRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGEVWLRGLH  67

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPE+ HG+WTNH PRR RKLLLH+R+I+ LVGK REGN  LVPLS+YF++GKVKVELALA
Sbjct  68   IPEFSHGTWTNHSPRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSDGKVKVELALA  127

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            RGKQ  DKRQD+ARR A+REV RELGRR KGM
Sbjct  128  RGKQDYDKRQDLARRTAEREVTRELGRRVKGM  159


>gi|334563507|ref|ZP_08516498.1| SsrA-binding protein [Corynebacterium bovis DSM 20582]
Length=162

 Score =  239 bits (611),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 109/152 (72%), Positives = 131/152 (87%), Gaps = 0/152 (0%)

Query  9    RQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHI  68
            R +VA+NRKARH+Y+I++  E GVAL GTEVKSLREG+ASL D++ATIDDGEVWLRN HI
Sbjct  10   RPVVATNRKARHDYTILDTLECGVALVGTEVKSLREGKASLVDAYATIDDGEVWLRNLHI  69

Query  69   PEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALAR  128
            PEY HG+WTNH PRR RKLLLHRR+ID+L+GK+R+GN  L+PL LYF +G++KVEL LAR
Sbjct  70   PEYSHGTWTNHAPRRTRKLLLHRREIDSLMGKVRDGNNTLIPLELYFVDGRLKVELGLAR  129

Query  129  GKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            GKQA DKRQD+ RR  +REV RELGRR KG+T
Sbjct  130  GKQAYDKRQDIKRRTEEREVTRELGRRVKGIT  161


>gi|331695048|ref|YP_004331287.1| SsrA-binding protein [Pseudonocardia dioxanivorans CB1190]
 gi|326949737|gb|AEA23434.1| SsrA-binding protein [Pseudonocardia dioxanivorans CB1190]
Length=161

 Score =  237 bits (605),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 112/151 (75%), Positives = 131/151 (87%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A NR+ARH+YSI++ +EAGVAL GTEVKSLR G+ASLAD+FATIDDGEVWLR  H
Sbjct  5    GRKVIAQNRRARHDYSILDTYEAGVALLGTEVKSLRLGRASLADAFATIDDGEVWLRGLH  64

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY HGSWTNHEPRR RKLLLHR +I+ LVGK REG   LVPLSLYF EGKVK E+ALA
Sbjct  65   IPEYTHGSWTNHEPRRTRKLLLHRAEIERLVGKTREGGLTLVPLSLYFNEGKVKCEVALA  124

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            +GK++ DKRQD+A+RDA+REV RE GR AKG
Sbjct  125  KGKKSYDKRQDLAKRDAEREVRREFGRAAKG  155


>gi|257054831|ref|YP_003132663.1| SsrA-binding protein [Saccharomonospora viridis DSM 43017]
 gi|256584703|gb|ACU95836.1| SsrA-binding protein [Saccharomonospora viridis DSM 43017]
Length=160

 Score =  231 bits (590),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 104/151 (69%), Positives = 132/151 (88%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++ SNR+ARH+Y+I++ +EAGVAL GTEVKSLR G+ASLADSFAT+DDGEV+LR  H
Sbjct  6    GRKVIVSNRRARHDYTIVDTYEAGVALVGTEVKSLRAGKASLADSFATVDDGEVFLRGLH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY HG+WTNHEPRR RKLLLHRR+I+ L+GK +E  ++L+PLSLYF +GKVKVELAL 
Sbjct  66   IPEYSHGTWTNHEPRRTRKLLLHRREIEKLIGKTKESGYSLIPLSLYFKDGKVKVELALG  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            +G++A DKRQ +A+RDAQRE+ R +GR AKG
Sbjct  126  KGRKAYDKRQAIAKRDAQREMARAMGRAAKG  156


>gi|296394148|ref|YP_003659032.1| SsrA-binding protein [Segniliparus rotundus DSM 44985]
 gi|296181295|gb|ADG98201.1| SsrA-binding protein [Segniliparus rotundus DSM 44985]
Length=162

 Score =  231 bits (589),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 107/150 (72%), Positives = 128/150 (86%), Gaps = 0/150 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            ++A NRKARH+YSI++V+EAGV LQGTEVKSLREG A+L+D++AT+D  EVWLR  HIPE
Sbjct  13   LIARNRKARHDYSILDVYEAGVVLQGTEVKSLREGHANLSDAYATVDGDEVWLRGVHIPE  72

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            YR+GSWTNH P R RKLLLHRR+I+ LVGK REGN  LVPLS+YF  GKVKVE+ALARGK
Sbjct  73   YRNGSWTNHTPTRTRKLLLHRREIENLVGKTREGNTTLVPLSMYFKAGKVKVEIALARGK  132

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGMT  160
            Q  DKRQD+A+RDA REV+R +GR  KGM+
Sbjct  133  QLHDKRQDLAKRDADREVVRAIGRARKGMS  162


>gi|326383349|ref|ZP_08205037.1| SsrA-binding protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326198099|gb|EGD55285.1| SsrA-binding protein [Gordonia neofelifaecis NRRL B-59395]
Length=157

 Score =  229 bits (585),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 104/152 (69%), Positives = 129/152 (85%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            G+ ++A+NRKARHNY+I+E FEAG+ LQGTEVK+LR+G+ASL D+FATIDDGEVWL   H
Sbjct  6    GKSVIATNRKARHNYTILETFEAGMVLQGTEVKALRDGKASLVDAFATIDDGEVWLNAVH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            I EY  G+WTNH PRR RKLL+HRR+ID L+GK+R+GN  LVPLS+YF++G  KVELALA
Sbjct  66   IAEYGSGTWTNHPPRRKRKLLMHRREIDGLIGKLRDGNLTLVPLSMYFSDGYAKVELALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            +GKQA DKR+D+A R A+REV R +GRR KGM
Sbjct  126  KGKQAHDKRRDIAERTAKREVERTVGRRVKGM  157


>gi|317507099|ref|ZP_07964860.1| SsrA-binding protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254593|gb|EFV13902.1| SsrA-binding protein [Segniliparus rugosus ATCC BAA-974]
Length=159

 Score =  229 bits (585),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 107/149 (72%), Positives = 127/149 (86%), Gaps = 0/149 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            ++A NRKARH+YSI++V+EAGV LQGTEVKSLREG A+L D++AT+D  EVWLR  HIPE
Sbjct  10   LIARNRKARHDYSILDVYEAGVVLQGTEVKSLREGHANLLDAYATVDGDEVWLRGVHIPE  69

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            YR+GSWTNH P R RKLLLHRR+I+ LVGK REGN  LVPLS+YF  G+VKVE+ALARGK
Sbjct  70   YRNGSWTNHTPTRTRKLLLHRREIEDLVGKTREGNTTLVPLSMYFKAGRVKVEIALARGK  129

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGM  159
            Q  DKRQD+A+RDA REV+R +GRR KGM
Sbjct  130  QLHDKRQDLAKRDADREVIRAMGRRRKGM  158


>gi|237786015|ref|YP_002906720.1| SsrA-binding protein [Corynebacterium kroppenstedtii DSM 44385]
 gi|259511417|sp|C4LK22.1|SSRP_CORK4 RecName: Full=SsrA-binding protein
 gi|237758927|gb|ACR18177.1| tmRNA-binding protein [Corynebacterium kroppenstedtii DSM 44385]
Length=183

 Score =  229 bits (584),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 106/160 (67%), Positives = 132/160 (83%), Gaps = 0/160 (0%)

Query  1    VSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE  60
            VSK +   R +VA+NR+ARH+Y+I++ +EAG+ L GTEVKSLREG+ASL DSFATIDDGE
Sbjct  23   VSKKNANKRLVVATNRRARHDYTILDTWEAGIQLVGTEVKSLREGKASLIDSFATIDDGE  82

Query  61   VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKV  120
            VWLR+ HIPEY  G WTNH PRR RKLLLHR +ID+++GK+R+GN  L+PLSLYF++GK+
Sbjct  83   VWLRHLHIPEYSKGHWTNHSPRRTRKLLLHRNEIDSIMGKVRDGNNTLIPLSLYFSDGKL  142

Query  121  KVELALARGKQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            KVELAL RGKQ  D+RQD+ RR  +RE  R LGRR KG+T
Sbjct  143  KVELALGRGKQDYDRRQDIKRRTEEREATRALGRRVKGLT  182


>gi|325001485|ref|ZP_08122597.1| SsrA-binding protein [Pseudonocardia sp. P1]
Length=161

 Score =  229 bits (583),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 107/151 (71%), Positives = 131/151 (87%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A NR+ARH+YSI++VFEAGVAL+GTEVKSLR G+AS+AD+FATIDDGE++LR  H
Sbjct  5    GRKVIAQNRRARHDYSILDVFEAGVALKGTEVKSLRLGRASMADAFATIDDGEIFLRGLH  64

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  GSWTNHEPRR RKLLLHR +ID L+GK REG   LVPLSLYF +GKVK E+ALA
Sbjct  65   IPEYVRGSWTNHEPRRTRKLLLHREEIDRLMGKTREGGLTLVPLSLYFNDGKVKCEIALA  124

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            RGK+  DKR+D+A++DAQRE+ R +GR AKG
Sbjct  125  RGKKDYDKRRDLAKKDAQREMARAVGRAAKG  155


>gi|302524560|ref|ZP_07276902.1| SsrA-binding protein [Streptomyces sp. AA4]
 gi|302433455|gb|EFL05271.1| SsrA-binding protein [Streptomyces sp. AA4]
Length=160

 Score =  229 bits (583),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 101/151 (67%), Positives = 130/151 (87%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            G++++ASNRKARH+YSI++ +EAG+ LQGTEVKSLR G+ASL D+FAT+DDGEVWLRN H
Sbjct  6    GQKVIASNRKARHDYSILDTYEAGMVLQGTEVKSLRAGKASLVDAFATVDDGEVWLRNVH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+WTNH PRR RKLLLHRR+I+ L+GK +E   +LVPLS+YF +GKVKVE+ALA
Sbjct  66   IPEYTQGTWTNHMPRRTRKLLLHRREIERLIGKTKESGLSLVPLSMYFKDGKVKVEIALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            +GK+A DKRQ +A+RDAQ+++ R +GR  KG
Sbjct  126  KGKKAYDKRQTLAKRDAQKDISRAMGRALKG  156


>gi|225020769|ref|ZP_03709961.1| hypothetical protein CORMATOL_00776 [Corynebacterium matruchotii 
ATCC 33806]
 gi|305680214|ref|ZP_07403024.1| SsrA-binding protein [Corynebacterium matruchotii ATCC 14266]
 gi|224946471|gb|EEG27680.1| hypothetical protein CORMATOL_00776 [Corynebacterium matruchotii 
ATCC 33806]
 gi|305660834|gb|EFM50331.1| SsrA-binding protein [Corynebacterium matruchotii ATCC 14266]
Length=164

 Score =  228 bits (582),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 105/149 (71%), Positives = 125/149 (84%), Gaps = 0/149 (0%)

Query  12   VASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEY  71
            +A+NRKARH+Y+I+E +E G+ L GTEVKSLREG+ASL D+FATIDDGEVWLRN HIPEY
Sbjct  15   IATNRKARHDYNILETYECGMVLVGTEVKSLREGKASLVDAFATIDDGEVWLRNLHIPEY  74

Query  72   RHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGKQ  131
              G WTNH PRR RKLLLHRR+IDTL GK+R+GN  LVPLSLYF  G +K EL LA+GKQ
Sbjct  75   SRGHWTNHSPRRVRKLLLHRREIDTLTGKVRDGNKTLVPLSLYFKNGHLKCELGLAQGKQ  134

Query  132  ARDKRQDMARRDAQREVLRELGRRAKGMT  160
            A DKRQD+ RR  +RE++R+LGRR KG+T
Sbjct  135  AYDKRQDIKRRTEEREIVRDLGRRVKGIT  163


>gi|260579722|ref|ZP_05847581.1| SsrA-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602152|gb|EEW15470.1| SsrA-binding protein [Corynebacterium jeikeium ATCC 43734]
Length=184

 Score =  227 bits (579),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 105/152 (70%), Positives = 126/152 (83%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            G+ +VA+NRKARH+Y II+ +E GV L GTEVKSLREG+ASL D++ATID+GEVWLR  H
Sbjct  31   GQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWLRGLH  90

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G WTNH PRR RKLLLHRR+ID+L+GK+R+GN  LVPL LYF  GK+KVELALA
Sbjct  91   IPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVAGKLKVELALA  150

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            RGKQ  DKRQD+ RR  +RE+ RE+GRR KG+
Sbjct  151  RGKQEYDKRQDIKRRTEEREITREMGRRIKGI  182


>gi|68535528|ref|YP_250233.1| SsrA-binding protein [Corynebacterium jeikeium K411]
 gi|123651454|sp|Q4JX42.1|SSRP_CORJK RecName: Full=SsrA-binding protein
 gi|68263127|emb|CAI36615.1| smpB [Corynebacterium jeikeium K411]
Length=184

 Score =  227 bits (579),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 105/152 (70%), Positives = 126/152 (83%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            G+ +VA+NRKARH+Y II+ +E GV L GTEVKSLREG+ASL D++ATID+GEVWLR  H
Sbjct  31   GQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWLRGLH  90

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G WTNH PRR RKLLLHRR+ID+L+GK+R+GN  LVPL LYF  GK+KVELALA
Sbjct  91   IPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVAGKLKVELALA  150

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            RGKQ  DKRQD+ RR  +RE+ RE+GRR KG+
Sbjct  151  RGKQEYDKRQDIKRRTEEREITREMGRRIKGI  182


>gi|340793658|ref|YP_004759121.1| hypothetical protein CVAR_0698 [Corynebacterium variabile DSM 
44702]
 gi|340533568|gb|AEK36048.1| hypothetical protein CVAR_0698 [Corynebacterium variabile DSM 
44702]
Length=183

 Score =  225 bits (574),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 103/153 (68%), Positives = 127/153 (84%), Gaps = 0/153 (0%)

Query  7    GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNA  66
            GG  +VA+NRKARHN+ I+E +EAG+AL GTEVKSLREG+ASL D+FAT+DDGE+WLR  
Sbjct  29   GGPLVVATNRKARHNFKILETYEAGLALVGTEVKSLREGKASLVDAFATVDDGEIWLRGL  88

Query  67   HIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELAL  126
            HIPEY HG+WTNH PRR RKLL+HR +ID+++GK+R+G   LVPL +YF+ G+ KVELAL
Sbjct  89   HIPEYTHGTWTNHAPRRTRKLLMHRGEIDSVMGKVRDGKNTLVPLRIYFSGGRAKVELAL  148

Query  127  ARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            A GKQ  DKRQD+ RR  +REV RELGRR KG+
Sbjct  149  ATGKQDYDKRQDIKRRTEEREVTRELGRRVKGI  181


>gi|300783179|ref|YP_003763470.1| SsrA-binding protein [Amycolatopsis mediterranei U32]
 gi|299792693|gb|ADJ43068.1| SsrA-binding protein [Amycolatopsis mediterranei U32]
 gi|340524559|gb|AEK39764.1| SsrA-binding protein [Amycolatopsis mediterranei S699]
Length=160

 Score =  224 bits (571),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 99/151 (66%), Positives = 128/151 (85%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            G++++ SNRKARH+YSI++ +E G+ L GTEVKSLREG+ASLAD+FAT+DDGEVWLRN H
Sbjct  6    GQKVIVSNRKARHDYSILDTYECGLVLVGTEVKSLREGKASLADAFATVDDGEVWLRNVH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+WTNH PRR RKLLLHRR+I+ L+GK +E   +LVPLS+YF +GKVKVE+ALA
Sbjct  66   IPEYTQGTWTNHMPRRTRKLLLHRREIEKLIGKTKESGLSLVPLSMYFKDGKVKVEIALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            +GK+A DKRQ +A+RDA R++ + +GR  KG
Sbjct  126  QGKKAYDKRQTLAKRDADRDIRKAMGRALKG  156


>gi|213966063|ref|ZP_03394251.1| SsrA-binding protein [Corynebacterium amycolatum SK46]
 gi|213951261|gb|EEB62655.1| SsrA-binding protein [Corynebacterium amycolatum SK46]
Length=167

 Score =  223 bits (569),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 103/149 (70%), Positives = 125/149 (84%), Gaps = 0/149 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            +VA+NR+ARH+Y+I++ +E GV L GTEVK+LREG+ASL D+FATIDDGEVWLR  HIPE
Sbjct  17   VVATNRRARHDYNILDTYECGVVLVGTEVKALREGKASLNDAFATIDDGEVWLRGLHIPE  76

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            Y +GSWTNH PRR+RKLLLHR++IDTL GK+R+GN  LVPL LYF  G++KVELALARGK
Sbjct  77   YSYGSWTNHSPRRSRKLLLHRKEIDTLWGKVRDGNNTLVPLKLYFTNGRLKVELALARGK  136

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGM  159
            Q  DKRQD+ RR  +RE  R LGRR KG+
Sbjct  137  QDYDKRQDIKRRTEEREATRALGRRVKGI  165


>gi|336324939|ref|YP_004604905.1| tmRNA-binding protein [Corynebacterium resistens DSM 45100]
 gi|336100921|gb|AEI08741.1| tmRNA-binding protein [Corynebacterium resistens DSM 45100]
Length=184

 Score =  223 bits (569),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 102/152 (68%), Positives = 125/152 (83%), Gaps = 0/152 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            G  +VA+NRKARH+Y I++ +E GV L GTEVK+LREG+ASL D++ATID+GEVWLR  H
Sbjct  31   GPLVVATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYATIDEGEVWLRGLH  90

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G WTNH PRR RKLLLHRR+ID+L+GK+R+GN  LVPL LYF  G++KVELALA
Sbjct  91   IPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNSTLVPLQLYFVAGRLKVELALA  150

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            RGKQ  DKRQD+ RR  +RE+ RE+GRR KG+
Sbjct  151  RGKQEYDKRQDIKRRTEEREITREMGRRIKGI  182


>gi|337290245|ref|YP_004629266.1| hypothetical protein CULC22_00631 [Corynebacterium ulcerans BR-AD22]
 gi|334696365|gb|AEG81162.1| hypothetical protein CULC809_00623 [Corynebacterium ulcerans 
809]
 gi|334698551|gb|AEG83347.1| hypothetical protein CULC22_00631 [Corynebacterium ulcerans BR-AD22]
Length=163

 Score =  223 bits (568),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 101/149 (68%), Positives = 127/149 (86%), Gaps = 0/149 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            ++A+NRKARH+Y I+E +E G+ L GTE+KSLREG+ASL D+FATID+GEVWLRN +IP 
Sbjct  13   VIATNRKARHDYKILETYECGIVLLGTEIKSLREGKASLVDAFATIDEGEVWLRNLNIPI  72

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            Y  GSWTNH P+R RKLLLHRR+ID+L+GK+R+GN  LVPLSLYF+ G++KVEL LA+GK
Sbjct  73   YSMGSWTNHSPKRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFSGGRLKVELGLAQGK  132

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGM  159
            Q  DKRQD+ RR  +REV+RELGRR KG+
Sbjct  133  QDYDKRQDIKRRTEEREVVRELGRRVKGI  161


>gi|38233356|ref|NP_939123.1| SsrA-binding protein [Corynebacterium diphtheriae NCTC 13129]
 gi|61216545|sp|Q6NIL8.1|SSRP_CORDI RecName: Full=SsrA-binding protein
 gi|38199616|emb|CAE49272.1| SsrA-binding protein [Corynebacterium diphtheriae]
Length=163

 Score =  219 bits (559),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 99/149 (67%), Positives = 124/149 (84%), Gaps = 0/149 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            ++ASNRKARH+Y I++ FE G+ L GTE+KS+REG+ SL DSFATID+GE W+RN +IP 
Sbjct  13   VIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDEGEAWIRNLNIPI  72

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            Y  GSWTNH P R RKLLLHRR+ID+L+GK+R+GN  LVPLSLYF EG++KVEL LA+GK
Sbjct  73   YSRGSWTNHSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKEGRLKVELGLAQGK  132

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGM  159
            Q  DKRQD+ RR  +REV+R+LGRR KG+
Sbjct  133  QDYDKRQDIKRRTEEREVVRDLGRRVKGI  161


>gi|300858000|ref|YP_003782983.1| hypothetical protein cpfrc_00582 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|300685454|gb|ADK28376.1| hypothetical protein cpfrc_00582 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|302205727|gb|ADL10069.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis 
C231]
 gi|302330281|gb|ADL20475.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis 
1002]
 gi|308275964|gb|ADO25863.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis 
I19]
 gi|341824395|gb|AEK91916.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis 
PAT10]
Length=163

 Score =  219 bits (558),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 99/149 (67%), Positives = 126/149 (85%), Gaps = 0/149 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            ++A+NRKARH+Y I+E +E G+ L GTE+KSLREG+ASL D+FATID+GEVWLRN +IP 
Sbjct  13   VIATNRKARHDYKILESYECGIVLLGTEIKSLREGKASLVDAFATIDEGEVWLRNLNIPI  72

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            Y  GSWTNH P+R RKLL+HRR+ID+L+GK+R+GN  LVPLSLYF+ G++KVEL LA+GK
Sbjct  73   YSMGSWTNHSPKRTRKLLMHRREIDSLMGKVRDGNKTLVPLSLYFSGGRLKVELGLAQGK  132

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGM  159
            Q  DKRQD+ RR  +REV+RELG R KG+
Sbjct  133  QDYDKRQDIKRRTEEREVVRELGHRVKGI  161


>gi|300781766|ref|ZP_07091620.1| SsrA-binding protein [Corynebacterium genitalium ATCC 33030]
 gi|300533473|gb|EFK54534.1| SsrA-binding protein [Corynebacterium genitalium ATCC 33030]
Length=162

 Score =  219 bits (558),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 100/157 (64%), Positives = 126/157 (81%), Gaps = 0/157 (0%)

Query  3    KSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVW  62
            K    G  ++ASNRKARH+Y+I++ +E G+ LQGTE+KSLR+G+ASL ++FATID+GEVW
Sbjct  4    KKKTDGSNVIASNRKARHDYTILDTYETGIVLQGTEIKSLRDGKASLVEAFATIDNGEVW  63

Query  63   LRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKV  122
            LRN HIPEY  GSWTNH PRR RKLLLHRR+IDTL GK+R+GN  LVPL LY  EG+VKV
Sbjct  64   LRNLHIPEYSMGSWTNHSPRRTRKLLLHRREIDTLEGKLRDGNRTLVPLKLYLKEGRVKV  123

Query  123  ELALARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            EL LA+GKQ  DKR+ + +R   RE+ R+LGR+ KG+
Sbjct  124  ELGLAQGKQDYDKRRAIKQRTEDREITRDLGRKLKGI  160


>gi|134097704|ref|YP_001103365.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291006336|ref|ZP_06564309.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|166223449|sp|A4F8R5.1|SSRP_SACEN RecName: Full=SsrA-binding protein
 gi|133910327|emb|CAM00440.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338]
Length=158

 Score =  219 bits (557),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 97/151 (65%), Positives = 128/151 (85%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++A NR+ARH++S+++ +E G+ L GTEVKSLR+G+ASL D FAT+D GEVWLRN H
Sbjct  6    GRKLIAQNRRARHDWSVLDTYETGIVLTGTEVKSLRQGKASLVDGFATVDRGEVWLRNVH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  G+WTNHEPRR+RKLLLH+ +I  L+GKI+E   +L+PLSLYF++GK KVELALA
Sbjct  66   IPEYTEGTWTNHEPRRSRKLLLHKGEIIRLIGKIQESGLSLIPLSLYFSDGKAKVELALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            +GK+A DKRQD+A++DAQRE+ R +GR  KG
Sbjct  126  KGKKAHDKRQDLAKKDAQREIERAMGRARKG  156


>gi|25027370|ref|NP_737424.1| SsrA-binding protein [Corynebacterium efficiens YS-314]
 gi|259506491|ref|ZP_05749393.1| SsrA-binding protein [Corynebacterium efficiens YS-314]
 gi|29336731|sp|Q8FRE7.1|SSRP_COREF RecName: Full=SsrA-binding protein
 gi|23492651|dbj|BAC17624.1| putative SsrA-binding protein [Corynebacterium efficiens YS-314]
 gi|259165911|gb|EEW50465.1| SsrA-binding protein [Corynebacterium efficiens YS-314]
Length=164

 Score =  218 bits (556),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 100/151 (67%), Positives = 123/151 (82%), Gaps = 0/151 (0%)

Query  10   QIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIP  69
            Q++A+NRKARH+Y I++ +EAGV L GTE+KSLREG+ASL D+FA ID+GEVWL N HIP
Sbjct  13   QVLATNRKARHDYQILDTWEAGVVLLGTEIKSLREGKASLVDAFAVIDNGEVWLHNLHIP  72

Query  70   EYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARG  129
             Y  GSWTNH P+R RKLLLHRR+ID+L+GK+R+GN  LVPL LY   G+VK+EL LA+G
Sbjct  73   TYSMGSWTNHSPKRTRKLLLHRREIDSLMGKVRDGNRTLVPLKLYLVNGRVKLELGLAQG  132

Query  130  KQARDKRQDMARRDAQREVLRELGRRAKGMT  160
            KQ  DKRQD+ RR  +REV RELGRR KG+ 
Sbjct  133  KQDYDKRQDIKRRTEEREVTRELGRRIKGIN  163


>gi|172041180|ref|YP_001800894.1| SsrA-binding protein [Corynebacterium urealyticum DSM 7109]
 gi|238064646|sp|B1VI76.1|SSRP_CORU7 RecName: Full=SsrA-binding protein
 gi|171852484|emb|CAQ05460.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length=178

 Score =  218 bits (555),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 101/153 (67%), Positives = 125/153 (82%), Gaps = 0/153 (0%)

Query  7    GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNA  66
            GG  ++A+NRKARH+Y I++ +E GV L GTEVK+LREG+ASL D++ATID GEVWLR  
Sbjct  24   GGPAVIATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYATIDAGEVWLRGL  83

Query  67   HIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELAL  126
            HIPEY  G++ NH PRR RKLLLHRR+ID+L GK+R+GN  LVPL LYF +G++K ELAL
Sbjct  84   HIPEYSRGNFWNHTPRRVRKLLLHRREIDSLTGKVRDGNHTLVPLQLYFVDGRLKCELAL  143

Query  127  ARGKQARDKRQDMARRDAQREVLRELGRRAKGM  159
            ARGKQ  DKRQD+ RR  +REV+RELGR+ KGM
Sbjct  144  ARGKQDYDKRQDIKRRTEEREVVRELGRKIKGM  176


>gi|19552031|ref|NP_600033.1| SsrA-binding protein [Corynebacterium glutamicum ATCC 13032]
 gi|62389694|ref|YP_225096.1| SsrA-binding protein [Corynebacterium glutamicum ATCC 13032]
 gi|145294964|ref|YP_001137785.1| SsrA-binding protein [Corynebacterium glutamicum R]
 6 more sequence titles
 
gi|23822164|sp|Q8NS75.1|SSRP_CORGL RecName: Full=SsrA-binding protein
 gi|166223213|sp|A4QCD6.1|SSRP_CORGB RecName: Full=SsrA-binding protein
 gi|21323570|dbj|BAB98197.1| tmRNA-binding protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325029|emb|CAF19510.1| SMALL PROTEIN B HOMOLOGUE [Corynebacterium glutamicum ATCC 13032]
 gi|140844884|dbj|BAF53883.1| hypothetical protein [Corynebacterium glutamicum R]
 gi|344043696|gb|EGV39384.1| SsrA-binding protein [Corynebacterium glutamicum S9114]
Length=164

 Score =  215 bits (547),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 98/149 (66%), Positives = 123/149 (83%), Gaps = 0/149 (0%)

Query  11   IVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPE  70
            ++A+NRKARH+Y II+ +EAGV L GTE+KSLREG+ SL DSFATID+GE+WL++ HIP+
Sbjct  14   VLATNRKARHDYHIIDTWEAGVVLLGTEIKSLREGKVSLVDSFATIDNGEIWLQHLHIPQ  73

Query  71   YRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGK  130
            Y  GSWTNH P+R RKLLLHR +ID+L+GK+R+GN  LVPL LY   G+VK+EL LA+GK
Sbjct  74   YSMGSWTNHTPKRTRKLLLHRNEIDSLMGKVRDGNRTLVPLKLYLKNGRVKLELGLAQGK  133

Query  131  QARDKRQDMARRDAQREVLRELGRRAKGM  159
            Q  DKRQD+ RR  +REV RELGRR KG+
Sbjct  134  QDYDKRQDIKRRTEEREVTRELGRRIKGI  162


>gi|117928935|ref|YP_873486.1| SsrA-binding protein [Acidothermus cellulolyticus 11B]
 gi|166222352|sp|A0LVP0.1|SSRP_ACIC1 RecName: Full=SsrA-binding protein
 gi|117649398|gb|ABK53500.1| SsrA-binding protein [Acidothermus cellulolyticus 11B]
Length=159

 Score =  214 bits (546),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 104/151 (69%), Positives = 121/151 (81%), Gaps = 0/151 (0%)

Query  8    GRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAH  67
            GR+++ASN+KARH+Y I + +EAG+ L GTEVKSLR G+ASL D FA I DGEVWL+N H
Sbjct  6    GRKLIASNKKARHDYHIEDTYEAGIVLTGTEVKSLRAGRASLVDGFALIKDGEVWLQNVH  65

Query  68   IPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVKVELALA  127
            IPEY  GSWTNHEPRR RKLLLH+R+I  L+GK RE    LVPLSLYF +GK KVELALA
Sbjct  66   IPEYAEGSWTNHEPRRPRKLLLHKREILRLLGKTRETGLTLVPLSLYFRDGKAKVELALA  125

Query  128  RGKQARDKRQDMARRDAQREVLRELGRRAKG  158
            RGK+A DKRQ +A R AQRE+ R LGRR KG
Sbjct  126  RGKRAYDKRQALAERHAQREIARALGRRVKG  156



Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127750398496


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40