BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3103c

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842674|ref|NP_337711.1|  hypothetical protein MT3186.1 [Myco...   272    1e-71
gi|15610240|ref|NP_217619.1|  hypothetical protein Rv3103c [Mycob...   271    3e-71
gi|183981544|ref|YP_001849835.1|  hypothetical protein MMAR_1529 ...   100    7e-20
gi|296169217|ref|ZP_06850870.1|  conserved hypothetical protein [...  99.4    2e-19
gi|118617902|ref|YP_906234.1|  hypothetical protein MUL_2410 [Myc...  98.6    3e-19
gi|254776427|ref|ZP_05217943.1|  hypothetical protein MaviaA2_174...  94.0    7e-18
gi|41409271|ref|NP_962107.1|  hypothetical protein MAP3173c [Myco...  94.0    7e-18
gi|118465405|ref|YP_883157.1|  hypothetical protein MAV_4004 [Myc...  93.6    8e-18
gi|167969711|ref|ZP_02551988.1|  hypothetical proline rich protei...  90.1    9e-17
gi|126434179|ref|YP_001069870.1|  hypothetical protein Mjls_1581 ...  89.0    2e-16
gi|108798580|ref|YP_638777.1|  hypothetical protein Mmcs_1610 [My...  89.0    2e-16
gi|145225028|ref|YP_001135706.1|  hypothetical protein Mflv_4449 ...  85.5    2e-15
gi|333991483|ref|YP_004524097.1|  hypothetical protein JDM601_284...  79.0    2e-13
gi|342861023|ref|ZP_08717672.1|  hypothetical protein MCOL_19167 ...  77.4    6e-13
gi|120402910|ref|YP_952739.1|  hypothetical protein Mvan_1913 [My...  75.5    3e-12
gi|118469794|ref|YP_886448.1|  hypothetical protein MSMEG_2088 [M...  66.2    2e-09


>gi|15842674|ref|NP_337711.1| hypothetical protein MT3186.1 [Mycobacterium tuberculosis CDC1551]
 gi|253797796|ref|YP_003030797.1| hypothetical protein TBMG_00863 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365731|ref|ZP_04981776.1| hypothetical proline-rich protein [Mycobacterium tuberculosis 
str. Haarlem]
 10 more sequence titles
 Length=158

 Score =  272 bits (695),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  1    VKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV  60
            VKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV
Sbjct  14   VKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV  73

Query  61   PDPDYTWVPRTRVQPPTVKATPTTTSSTPPVSPPETTTDSAVPPPFELPPPFGPGTTTPT  120
            PDPDYTWVPRTRVQPPTVKATPTTTSSTPPVSPPETTTDSAVPPPFELPPPFGPGTTTPT
Sbjct  74   PDPDYTWVPRTRVQPPTVKATPTTTSSTPPVSPPETTTDSAVPPPFELPPPFGPGTTTPT  133

Query  121  PPAPLPQPGPGPTAGTYPKSEPPTR  145
            PPAPLPQPGPGPTAGTYPKSEPPTR
Sbjct  134  PPAPLPQPGPGPTAGTYPKSEPPTR  158


>gi|15610240|ref|NP_217619.1| hypothetical protein Rv3103c [Mycobacterium tuberculosis H37Rv]
 gi|31794282|ref|NP_856775.1| hypothetical protein Mb3130c [Mycobacterium bovis AF2122/97]
 gi|121638988|ref|YP_979212.1| hypothetical protein BCG_3128c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 61 more sequence titles
 Length=145

 Score =  271 bits (692),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  1    VKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV  60
            +KLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV
Sbjct  1    MKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV  60

Query  61   PDPDYTWVPRTRVQPPTVKATPTTTSSTPPVSPPETTTDSAVPPPFELPPPFGPGTTTPT  120
            PDPDYTWVPRTRVQPPTVKATPTTTSSTPPVSPPETTTDSAVPPPFELPPPFGPGTTTPT
Sbjct  61   PDPDYTWVPRTRVQPPTVKATPTTTSSTPPVSPPETTTDSAVPPPFELPPPFGPGTTTPT  120

Query  121  PPAPLPQPGPGPTAGTYPKSEPPTR  145
            PPAPLPQPGPGPTAGTYPKSEPPTR
Sbjct  121  PPAPLPQPGPGPTAGTYPKSEPPTR  145


>gi|183981544|ref|YP_001849835.1| hypothetical protein MMAR_1529 [Mycobacterium marinum M]
 gi|183174870|gb|ACC39980.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=166

 Score =  100 bits (249),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 49/71 (70%), Positives = 57/71 (81%), Gaps = 1/71 (1%)

Query  5   NQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFVPDP  63
           N+KR  P  LFG RIR ST+VL+ AFLAVWW+Y+TY PQ      +PP+QVVPPGFVPDP
Sbjct  19  NRKRGTPRQLFGGRIRLSTVVLMVAFLAVWWLYDTYNPQHSAGKTTPPSQVVPPGFVPDP  78

Query  64  DYTWVPRTRVQ  74
           +YTWVPRTRVQ
Sbjct  79  NYTWVPRTRVQ  89


>gi|296169217|ref|ZP_06850870.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896115|gb|EFG75782.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=160

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 51/73 (70%), Positives = 58/73 (80%), Gaps = 5/73 (6%)

Query  4   SNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQ-APGPGDSPPTQVVPPGFVP  61
           S   R WP Y+FG R+RTSTLVLI AF AVWW+Y+TYRP+ AP P   P  QVVPPGFVP
Sbjct  15  SAADRRWPHYMFGGRVRTSTLVLIVAFFAVWWVYDTYRPEPAPKP---PAQQVVPPGFVP  71

Query  62  DPDYTWVPRTRVQ  74
           DP+YTWVPR+RVQ
Sbjct  72  DPNYTWVPRSRVQ  84


>gi|118617902|ref|YP_906234.1| hypothetical protein MUL_2410 [Mycobacterium ulcerans Agy99]
 gi|118570012|gb|ABL04763.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=166

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 48/71 (68%), Positives = 56/71 (79%), Gaps = 1/71 (1%)

Query  5   NQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFVPDP  63
           N+KR  P  LFG RIR ST+VL+ AFLAVWW+Y+TY PQ      +PP+QVVPPG VPDP
Sbjct  19  NRKRGTPRQLFGGRIRLSTVVLMVAFLAVWWLYDTYNPQHSAGKTTPPSQVVPPGLVPDP  78

Query  64  DYTWVPRTRVQ  74
           +YTWVPRTRVQ
Sbjct  79  NYTWVPRTRVQ  89


>gi|254776427|ref|ZP_05217943.1| hypothetical protein MaviaA2_17409 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=166

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 47/73 (65%), Positives = 57/73 (79%), Gaps = 5/73 (6%)

Query  4   SNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQ-APGPGDSPPTQVVPPGFVP  61
           +  +  WP Y+FG R+RTST VLI AFL VWW+Y+TYRP+ AP P   P  QVVPPGFVP
Sbjct  17  TEAEHRWPQYVFGGRMRTSTFVLIVAFLLVWWVYDTYRPEPAPKP---PAQQVVPPGFVP  73

Query  62  DPDYTWVPRTRVQ  74
           DP+YTWVPR+R+Q
Sbjct  74  DPNYTWVPRSRLQ  86


>gi|41409271|ref|NP_962107.1| hypothetical protein MAP3173c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398091|gb|AAS05721.1| hypothetical protein MAP_3173c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336459373|gb|EGO38316.1| hypothetical protein MAPs_04720 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=166

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 47/73 (65%), Positives = 57/73 (79%), Gaps = 5/73 (6%)

Query  4   SNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQ-APGPGDSPPTQVVPPGFVP  61
           +  +  WP Y+FG R+RTST VLI AFL VWW+Y+TYRP+ AP P   P  QVVPPGFVP
Sbjct  17  TEAEHRWPQYVFGGRMRTSTFVLIVAFLLVWWVYDTYRPEPAPKP---PAQQVVPPGFVP  73

Query  62  DPDYTWVPRTRVQ  74
           DP+YTWVPR+R+Q
Sbjct  74  DPNYTWVPRSRLQ  86


>gi|118465405|ref|YP_883157.1| hypothetical protein MAV_4004 [Mycobacterium avium 104]
 gi|118166692|gb|ABK67589.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=166

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 47/73 (65%), Positives = 57/73 (79%), Gaps = 5/73 (6%)

Query  4   SNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQ-APGPGDSPPTQVVPPGFVP  61
           +  +  WP Y+FG R+RTST VLI AFL VWW+Y+TYRP+ AP P   P  QVVPPGFVP
Sbjct  17  TEAEHRWPQYVFGGRMRTSTFVLIVAFLLVWWVYDTYRPEPAPKP---PAQQVVPPGFVP  73

Query  62  DPDYTWVPRTRVQ  74
           DP+YTWVPR+R+Q
Sbjct  74  DPNYTWVPRSRLQ  86


>gi|167969711|ref|ZP_02551988.1| hypothetical proline rich protein [Mycobacterium tuberculosis 
H37Ra]
Length=47

 Score = 90.1 bits (222),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 39/41 (96%), Positives = 40/41 (98%), Gaps = 0/41 (0%)

Query  1   VKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRP  41
           +KLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYR 
Sbjct  1   MKLSNQKRHWPGYLFGRIRTSTLVLIAAFLAVWWIYETYRA  41


>gi|126434179|ref|YP_001069870.1| hypothetical protein Mjls_1581 [Mycobacterium sp. JLS]
 gi|126233979|gb|ABN97379.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=161

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/76 (60%), Positives = 56/76 (74%), Gaps = 2/76 (2%)

Query  3   LSNQKRHWPGYL-FGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFVP  61
           + N KR WP Y+  GR+RTSTL LI AF+A++W+Y+ Y P    P  +P  QVVPPGFVP
Sbjct  10  MQNDKRVWPRYMPGGRVRTSTLGLIVAFIALFWLYQVYEPPV-RPAQNPAQQVVPPGFVP  68

Query  62  DPDYTWVPRTRVQPPT  77
           DPDYTWVPRT+V+ P 
Sbjct  69  DPDYTWVPRTQVEAPV  84


>gi|108798580|ref|YP_638777.1| hypothetical protein Mmcs_1610 [Mycobacterium sp. MCS]
 gi|119867680|ref|YP_937632.1| hypothetical protein Mkms_1635 [Mycobacterium sp. KMS]
 gi|108768999|gb|ABG07721.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693769|gb|ABL90842.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=161

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/76 (60%), Positives = 56/76 (74%), Gaps = 2/76 (2%)

Query  3   LSNQKRHWPGYL-FGRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFVP  61
           + N KR WP Y+  GR+RTSTL LI AF+A++W+Y+ Y P    P  +P  QVVPPGFVP
Sbjct  10  MQNDKRVWPRYMPGGRVRTSTLGLIVAFIALFWLYQVYEPPV-RPAQNPAQQVVPPGFVP  68

Query  62  DPDYTWVPRTRVQPPT  77
           DPDYTWVPRT+V+ P 
Sbjct  69  DPDYTWVPRTQVEAPV  84


>gi|145225028|ref|YP_001135706.1| hypothetical protein Mflv_4449 [Mycobacterium gilvum PYR-GCK]
 gi|315445397|ref|YP_004078276.1| hypothetical protein Mspyr1_38480 [Mycobacterium sp. Spyr1]
 gi|145217514|gb|ABP46918.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315263700|gb|ADU00442.1| hypothetical protein Mspyr1_38480 [Mycobacterium sp. Spyr1]
Length=178

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 39/74 (53%), Positives = 52/74 (71%), Gaps = 1/74 (1%)

Query  2   KLSNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV  60
           +L  + RH   YLFG R+R ST+ L+  F A++W+ + Y+P+ P P   P  QVVPPGFV
Sbjct  9   RLQPKNRHSRAYLFGGRMRVSTVGLVLVFFALYWVNQNYQPEPPAPAMDPAQQVVPPGFV  68

Query  61  PDPDYTWVPRTRVQ  74
           PDP+YTWVPRT V+
Sbjct  69  PDPNYTWVPRTNVE  82


>gi|333991483|ref|YP_004524097.1| hypothetical protein JDM601_2843 [Mycobacterium sp. JDM601]
 gi|333487451|gb|AEF36843.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=169

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 58/87 (67%), Gaps = 9/87 (10%)

Query  4   SNQKRHWPGYLF-GRIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFVPD  62
             ++  WP  LF GR+RTST++LI AF+AVWW+Y+TYRPQ   P         PPGF+PD
Sbjct  14  DGRRWRWPAQLFNGRVRTSTVLLIIAFVAVWWVYDTYRPQPTPPAAPQVV---PPGFIPD  70

Query  63  PDYTWVPRTRVQPPTVKATPTTTSSTP  89
           P YTWVPRTRVQ PT     TT S TP
Sbjct  71  PAYTWVPRTRVQQPT-----TTVSETP  92


>gi|342861023|ref|ZP_08717672.1| hypothetical protein MCOL_19167 [Mycobacterium colombiense CECT 
3035]
 gi|342131467|gb|EGT84737.1| hypothetical protein MCOL_19167 [Mycobacterium colombiense CECT 
3035]
Length=166

 Score = 77.4 bits (189),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 47/75 (63%), Positives = 59/75 (79%), Gaps = 5/75 (6%)

Query  4   SNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQ-APGPGDSPPTQVVPPGFVP  61
           S+ +  WP ++FG R+RTST VL+ AFL VWW+Y+TYRP+ AP P   P  Q+VPPGFVP
Sbjct  15  SDAEHRWPKHMFGGRMRTSTFVLVVAFLVVWWVYDTYRPEPAPKP---PAQQLVPPGFVP  71

Query  62  DPDYTWVPRTRVQPP  76
           DP+YTWVPR+RVQ P
Sbjct  72  DPNYTWVPRSRVQAP  86


>gi|120402910|ref|YP_952739.1| hypothetical protein Mvan_1913 [Mycobacterium vanbaalenii PYR-1]
 gi|119955728|gb|ABM12733.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=172

 Score = 75.5 bits (184),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 60/118 (51%), Positives = 73/118 (62%), Gaps = 5/118 (4%)

Query  2    KLSNQKRHWPGYLFG-RIRTSTLVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFV  60
            +   + R WP YL G RIR ST  LI AFLA++W+ + Y+P+ P P   P  QVVPPGFV
Sbjct  6    RRDGESRGWPTYLLGGRIRASTAGLILAFLALFWVNQNYQPELPAPTPDPAQQVVPPGFV  65

Query  61   PDPDYTWVPRTRVQP--PTVKATPTTTSSTPPVSPPETTTDSAVPPPFE--LPPPFGP  114
            PDP+YTWVPRT V P  P V  T  TT++T   +PPETTT +    P     P P GP
Sbjct  66   PDPNYTWVPRTNVAPRQPEVTTTTPTTTTTTTTTPPETTTATTTAEPTPSTTPGPLGP  123


>gi|118469794|ref|YP_886448.1| hypothetical protein MSMEG_2088 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171081|gb|ABK71977.1| hypothetical proline-rich protein [Mycobacterium smegmatis str. 
MC2 155]
Length=146

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 32/51 (63%), Positives = 40/51 (79%), Gaps = 3/51 (5%)

Query  23  LVLIAAFLAVWWIYETYRPQAPGPGDSPPTQVVPPGFVPDPDYTWVPRTRV  73
           +VLI AF A+WW+ +TY+P+   P  +   QVVPPGFVPDPDYTWVPRT+V
Sbjct  1   MVLIVAFFALWWLQQTYQPE---PARTETPQVVPPGFVPDPDYTWVPRTKV  48



Lambda     K      H
   0.313    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128154014136


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40