BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3108 Length=146 Score E Sequences producing significant alignments: (Bits) Value gi|15842679|ref|NP_337716.1| hypothetical protein MT3191 [Mycoba... 296 6e-79 gi|15610245|ref|NP_217624.1| hypothetical protein Rv3108 [Mycoba... 295 1e-78 gi|31794287|ref|NP_856780.1| hypothetical protein Mb3135 [Mycoba... 295 2e-78 gi|339633116|ref|YP_004724758.1| hypothetical protein MAF_31150 ... 293 5e-78 gi|15842699|ref|NP_337736.1| hypothetical protein MT3210 [Mycoba... 50.1 1e-04 >gi|15842679|ref|NP_337716.1| hypothetical protein MT3191 [Mycobacterium tuberculosis CDC1551] gi|167969717|ref|ZP_02551994.1| hypothetical protein MtubH3_17508 [Mycobacterium tuberculosis H37Ra] gi|13882998|gb|AAK47530.1| hypothetical protein MT3191 [Mycobacterium tuberculosis CDC1551] Length=169 Score = 296 bits (758), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 60 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP Sbjct 24 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 83 Query 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP Sbjct 84 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 143 Query 121 YPEPLARCSRSPGLNESSHMSGRIPP 146 YPEPLARCSRSPGLNESSHMSGRIPP Sbjct 144 YPEPLARCSRSPGLNESSHMSGRIPP 169 >gi|15610245|ref|NP_217624.1| hypothetical protein Rv3108 [Mycobacterium tuberculosis H37Rv] gi|121638993|ref|YP_979217.1| hypothetical protein BCG_3133 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662962|ref|YP_001284485.1| hypothetical protein MRA_3140 [Mycobacterium tuberculosis H37Ra] 54 more sequence titles Length=146 Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 60 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP Sbjct 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 60 Query 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP Sbjct 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 Query 121 YPEPLARCSRSPGLNESSHMSGRIPP 146 YPEPLARCSRSPGLNESSHMSGRIPP Sbjct 121 YPEPLARCSRSPGLNESSHMSGRIPP 146 >gi|31794287|ref|NP_856780.1| hypothetical protein Mb3135 [Mycobacterium bovis AF2122/97] gi|31619882|emb|CAD96822.1| HYPOTHETICAL PROTEIN Mb3135 [Mycobacterium bovis AF2122/97] Length=146 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/146 (99%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 60 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP Sbjct 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 60 Query 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP Sbjct 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 Query 121 YPEPLARCSRSPGLNESSHMSGRIPP 146 YPEPLARCSRSPGLNESSHMSGR+PP Sbjct 121 YPEPLARCSRSPGLNESSHMSGRVPP 146 >gi|339633116|ref|YP_004724758.1| hypothetical protein MAF_31150 [Mycobacterium africanum GM041182] gi|339332472|emb|CCC28185.1| hypothetical protein MAF_31150 [Mycobacterium africanum GM041182] Length=146 Score = 293 bits (751), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 145/146 (99%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHP 60 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADY+NASSDEPTNRHP Sbjct 1 MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYYNASSDEPTNRHP 60 Query 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP Sbjct 61 WPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATP 120 Query 121 YPEPLARCSRSPGLNESSHMSGRIPP 146 YPEPLARCSRSPGLNESSHMSGRIPP Sbjct 121 YPEPLARCSRSPGLNESSHMSGRIPP 146 >gi|15842699|ref|NP_337736.1| hypothetical protein MT3210 [Mycobacterium tuberculosis CDC1551] gi|167970208|ref|ZP_02552485.1| hypothetical protein MtubH3_20158 [Mycobacterium tuberculosis H37Ra] gi|289571335|ref|ZP_06451562.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|298526599|ref|ZP_07014008.1| hypothetical protein TBAG_02017 [Mycobacterium tuberculosis 94_M4241A] gi|13883019|gb|AAK47550.1| hypothetical protein MT3210 [Mycobacterium tuberculosis CDC1551] gi|289545089|gb|EFD48737.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|298496393|gb|EFI31687.1| hypothetical protein TBAG_02017 [Mycobacterium tuberculosis 94_M4241A] gi|323718213|gb|EGB27393.1| hypothetical protein TMMG_02260 [Mycobacterium tuberculosis CDC1551A] Length=54 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/41 (86%), Positives = 37/41 (91%), Gaps = 0/41 (0%) Query 75 MRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPA 115 M+ TNA RRRFGLSLTIHEDACRIISVV VVLEVRRAEP+ Sbjct 1 MQCTNASGRRRFGLSLTIHEDACRIISVVLVVLEVRRAEPS 41 Lambda K H 0.321 0.132 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127605758688 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40