BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3123
Length=164
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610260|ref|NP_217639.1| hypothetical protein Rv3123 [Mycoba... 317 4e-85
gi|31794298|ref|NP_856791.1| hypothetical protein Mb3146 [Mycoba... 316 8e-85
gi|15842695|ref|NP_337732.1| hypothetical protein MT3206 [Mycoba... 308 2e-82
gi|254233747|ref|ZP_04927072.1| hypothetical protein TBCG_03060 ... 281 2e-74
gi|339295955|gb|AEJ48066.1| hypothetical protein CCDC5079_2876 [... 216 8e-55
gi|167970212|ref|ZP_02552489.1| hypothetical protein MtubH3_2017... 213 1e-53
gi|323718210|gb|EGB27390.1| hypothetical protein TMMG_02257 [Myc... 113 1e-23
gi|251772375|gb|EES52942.1| protein of unknown function [Leptosp... 52.8 2e-05
gi|251772240|gb|EES52810.1| protein of unknown function [Leptosp... 52.8 2e-05
gi|251771593|gb|EES52169.1| protein of unknown function [Leptosp... 52.8 2e-05
gi|303238475|ref|ZP_07325009.1| hypothetical protein AceceDRAFT_... 50.8 6e-05
gi|308273747|emb|CBX30349.1| hypothetical protein N47_D31580 [un... 50.4 8e-05
gi|251771990|gb|EES52562.1| protein of unknown function [Leptosp... 49.7 1e-04
gi|308271242|emb|CBX27851.1| hypothetical protein N47_C19090 [un... 49.3 2e-04
gi|308271951|emb|CBX28559.1| hypothetical protein N47_G38830 [un... 49.3 2e-04
gi|224369094|ref|YP_002603258.1| hypothetical protein HRM2_19930... 49.3 2e-04
gi|308275193|emb|CBX31790.1| hypothetical protein N47_N26150 [un... 48.5 3e-04
gi|308271935|emb|CBX28543.1| hypothetical protein N47_G38670 [un... 48.5 3e-04
gi|308275284|emb|CBX31880.1| hypothetical protein N47_O12990 [un... 47.8 6e-04
gi|168698411|ref|ZP_02730688.1| hypothetical protein GobsU_02753... 46.2 0.002
gi|258404509|ref|YP_003197251.1| hypothetical protein Dret_0372 ... 43.1 0.013
gi|258406638|ref|YP_003199379.1| hypothetical protein Dret_2521 ... 43.1 0.013
gi|258405078|ref|YP_003197820.1| hypothetical protein Dret_0954 ... 43.1 0.015
gi|338213760|ref|YP_004657815.1| hypothetical protein Runsl_4352... 41.2 0.054
gi|298571345|gb|ADI87688.1| unknown protein [uncultured Nitrospi... 40.0 0.13
gi|168705582|ref|ZP_02737859.1| hypothetical protein GobsU_38978... 39.3 0.20
gi|168697946|ref|ZP_02730223.1| hypothetical protein GobsU_00380... 39.3 0.21
gi|311111564|ref|ZP_07712961.1| conserved hypothetical protein [... 38.9 0.23
gi|301058040|ref|ZP_07199095.1| conserved hypothetical protein [... 38.1 0.43
gi|268318577|ref|YP_003292233.1| hypothetical protein FI9785_78 ... 36.2 1.6
gi|338761951|gb|EGP13220.1| hypothetical protein PF01_01511 [Lac... 36.2 1.6
gi|329666407|gb|AEB92355.1| hypothetical protein LJP_0016c [Lact... 36.2 1.7
gi|42518100|ref|NP_964030.1| hypothetical protein LJ0015 [Lactob... 36.2 1.8
gi|282852332|ref|ZP_06261674.1| conserved hypothetical protein [... 35.4 2.8
gi|238853354|ref|ZP_04643734.1| conserved hypothetical protein [... 35.4 2.8
gi|116628699|ref|YP_813871.1| hypothetical protein LGAS_0016 [La... 35.4 3.0
gi|91789359|ref|YP_550311.1| thiol:disulfide interchange protein... 33.9 8.0
>gi|15610260|ref|NP_217639.1| hypothetical protein Rv3123 [Mycobacterium tuberculosis H37Rv]
gi|148662977|ref|YP_001284500.1| hypothetical protein MRA_3155 [Mycobacterium tuberculosis H37Ra]
gi|253800155|ref|YP_003033156.1| hypothetical protein TBMG_03167 [Mycobacterium tuberculosis KZN
1435]
24 more sequence titles
Length=164
Score = 317 bits (812), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/164 (99%), Positives = 164/164 (100%), Gaps = 0/164 (0%)
Query 1 LRSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRR 60
+RSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRR
Sbjct 1 MRSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRR 60
Query 61 LPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHD 120
LPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHD
Sbjct 61 LPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHD 120
Query 121 LAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
LAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 121 LAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
>gi|31794298|ref|NP_856791.1| hypothetical protein Mb3146 [Mycobacterium bovis AF2122/97]
gi|121639004|ref|YP_979228.1| hypothetical protein BCG_3144 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991496|ref|YP_002646185.1| hypothetical protein JTY_3139 [Mycobacterium bovis BCG str. Tokyo
172]
8 more sequence titles
Length=164
Score = 316 bits (809), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 162/164 (99%), Positives = 164/164 (100%), Gaps = 0/164 (0%)
Query 1 LRSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRR 60
+RSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGR+HRAPGPAHRLRARALRVVRR
Sbjct 1 MRSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRQHRAPGPAHRLRARALRVVRR 60
Query 61 LPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHD 120
LPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHD
Sbjct 61 LPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHD 120
Query 121 LAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
LAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 121 LAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
>gi|15842695|ref|NP_337732.1| hypothetical protein MT3206 [Mycobacterium tuberculosis CDC1551]
gi|148824316|ref|YP_001289070.1| hypothetical protein TBFG_13143 [Mycobacterium tuberculosis F11]
gi|254365751|ref|ZP_04981796.1| hypothetical protein TBHG_03054 [Mycobacterium tuberculosis str.
Haarlem]
gi|289759251|ref|ZP_06518629.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|13883015|gb|AAK47546.1| hypothetical protein MT3206 [Mycobacterium tuberculosis CDC1551]
gi|134151264|gb|EBA43309.1| hypothetical protein TBHG_03054 [Mycobacterium tuberculosis str.
Haarlem]
gi|148722843|gb|ABR07468.1| hypothetical protein TBFG_13143 [Mycobacterium tuberculosis F11]
gi|289714815|gb|EFD78827.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=159
Score = 308 bits (788), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/159 (99%), Positives = 159/159 (100%), Gaps = 0/159 (0%)
Query 6 VRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRLPRQE 65
+RWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRLPRQE
Sbjct 1 MRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRLPRQE 60
Query 66 PRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQL 125
PRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQL
Sbjct 61 PRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQL 120
Query 126 APALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
APALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 121 APALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 159
>gi|254233747|ref|ZP_04927072.1| hypothetical protein TBCG_03060 [Mycobacterium tuberculosis C]
gi|124599276|gb|EAY58380.1| hypothetical protein TBCG_03060 [Mycobacterium tuberculosis C]
Length=163
Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 20 GDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRLPRQEPRYRAGPGPVAPRL 79
GDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRLPRQEPRYRAGPGPVAPRL
Sbjct 19 GDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRLPRQEPRYRAGPGPVAPRL 78
Query 80 LPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTA 139
LPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTA
Sbjct 79 LPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTA 138
Query 140 RLVDLDSGDIETLVQQPIGQHTGHT 164
RLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 139 RLVDLDSGDIETLVQQPIGQHTGHT 163
>gi|339295955|gb|AEJ48066.1| hypothetical protein CCDC5079_2876 [Mycobacterium tuberculosis
CCDC5079]
gi|339299565|gb|AEJ51675.1| hypothetical protein CCDC5180_2838 [Mycobacterium tuberculosis
CCDC5180]
Length=110
Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 55 LRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHA 114
+RVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHA
Sbjct 1 MRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHA 60
Query 115 RQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
RQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 61 RQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 110
>gi|167970212|ref|ZP_02552489.1| hypothetical protein MtubH3_20178 [Mycobacterium tuberculosis
H37Ra]
gi|254552207|ref|ZP_05142654.1| hypothetical protein Mtube_17428 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294995485|ref|ZP_06801176.1| hypothetical protein Mtub2_13477 [Mycobacterium tuberculosis
210]
gi|297635762|ref|ZP_06953542.1| hypothetical protein MtubK4_16642 [Mycobacterium tuberculosis
KZN 4207]
gi|297732760|ref|ZP_06961878.1| hypothetical protein MtubKR_16802 [Mycobacterium tuberculosis
KZN R506]
gi|313660093|ref|ZP_07816973.1| hypothetical protein MtubKV_16807 [Mycobacterium tuberculosis
KZN V2475]
Length=108
Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/108 (99%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 57 VVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQ 116
+VRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQ
Sbjct 1 MVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQ 60
Query 117 HVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
HVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 61 HVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 108
>gi|323718210|gb|EGB27390.1| hypothetical protein TMMG_02257 [Mycobacterium tuberculosis CDC1551A]
Length=56
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/56 (99%), Positives = 56/56 (100%), Gaps = 0/56 (0%)
Query 109 VDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 164
+DLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT
Sbjct 1 MDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGDIETLVQQPIGQHTGHT 56
>gi|251772375|gb|EES52942.1| protein of unknown function [Leptospirillum ferrodiazotrophum]
Length=513
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (37%), Positives = 40/69 (58%), Gaps = 5/69 (7%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGE--HHSDWLTARLVDLDS 146
DGA WIW A ++ P A IVD +HA+QH+ +L+ L G+ +W R +LD
Sbjct 354 DGAAWIWKTAESLFPGALCIVDRFHAKQHLSELSKAL---FGDTPKAKEWTHCRYEELDE 410
Query 147 GDIETLVQQ 155
G ++ L+++
Sbjct 411 GRMDDLLKE 419
>gi|251772240|gb|EES52810.1| protein of unknown function [Leptospirillum ferrodiazotrophum]
Length=488
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (37%), Positives = 40/69 (58%), Gaps = 5/69 (7%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGE--HHSDWLTARLVDLDS 146
DGA WIW A ++ P A IVD +HA+QH+ +L+ L G+ +W R +LD
Sbjct 329 DGAAWIWKTAESLFPGALCIVDRFHAKQHLSELSKAL---FGDTPKAKEWTHCRYEELDE 385
Query 147 GDIETLVQQ 155
G ++ L+++
Sbjct 386 GRMDDLLKE 394
>gi|251771593|gb|EES52169.1| protein of unknown function [Leptospirillum ferrodiazotrophum]
Length=429
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (37%), Positives = 40/69 (58%), Gaps = 5/69 (7%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGE--HHSDWLTARLVDLDS 146
DGA WIW A ++ P A IVD +HA+QH+ +L+ L G+ +W R +LD
Sbjct 270 DGAAWIWKTAESLFPGALCIVDRFHAKQHLSELSKAL---FGDTPKAKEWTHCRYEELDE 326
Query 147 GDIETLVQQ 155
G ++ L+++
Sbjct 327 GRMDDLLKE 335
>gi|303238475|ref|ZP_07325009.1| hypothetical protein AceceDRAFT_0357 [Acetivibrio cellulolyticus
CD2]
gi|302593873|gb|EFL63587.1| hypothetical protein AceceDRAFT_0357 [Acetivibrio cellulolyticus
CD2]
Length=440
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/68 (31%), Positives = 35/68 (52%), Gaps = 6/68 (8%)
Query 69 RAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPA 128
RAG G V ++ DGA W+WN+ + P+A I+D YH ++V+ A +L
Sbjct 262 RAGYGRVKKVVI------IGDGAHWVWNMCEEMFPDAEYILDFYHMTENVYSYAKELLSC 315
Query 129 LGEHHSDW 136
+ + + W
Sbjct 316 IEKKYKKW 323
>gi|308273747|emb|CBX30349.1| hypothetical protein N47_D31580 [uncultured Desulfobacterium
sp.]
Length=371
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 33/66 (50%), Gaps = 0/66 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGD 148
DGA WIWN+A A IVDL+HAR+H ++ + W R +LD G
Sbjct 210 DGAIWIWNIADEQFYGAIQIVDLFHAREHYRNVGKAYFSQNKDKLHLWTEERRKELDDGR 269
Query 149 IETLVQ 154
+E ++
Sbjct 270 VEDVIN 275
>gi|251771990|gb|EES52562.1| protein of unknown function [Leptospirillum ferrodiazotrophum]
Length=513
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (37%), Positives = 39/69 (57%), Gaps = 5/69 (7%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGE--HHSDWLTARLVDLDS 146
DGA WIW A + P A IVD +HA+QH+ +L+ L G+ +W R +LD
Sbjct 354 DGAAWIWKTAEYLFPGALCIVDRFHAKQHLSELSHAL---FGDSPKAEEWRHCRYEELDE 410
Query 147 GDIETLVQQ 155
G ++ L+++
Sbjct 411 GRMDDLLKE 419
>gi|308271242|emb|CBX27851.1| hypothetical protein N47_C19090 [uncultured Desulfobacterium
sp.]
Length=202
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 33/66 (50%), Gaps = 0/66 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGD 148
DGA WIWN+A A IVDL+HAR+H ++ + W R +LD G
Sbjct 65 DGAIWIWNIADEQFYGAIQIVDLFHAREHYWNVGKAYFSQNKDKLHLWTEERRKELDDGR 124
Query 149 IETLVQ 154
+E ++
Sbjct 125 VEDVIN 130
>gi|308271951|emb|CBX28559.1| hypothetical protein N47_G38830 [uncultured Desulfobacterium
sp.]
gi|308272634|emb|CBX29238.1| hypothetical protein N47_J02190 [uncultured Desulfobacterium
sp.]
Length=371
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 33/66 (50%), Gaps = 0/66 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGD 148
DGA WIWN+A A IVDL+HAR+H ++ + W R +LD G
Sbjct 210 DGAIWIWNIADEQFYGAIQIVDLFHAREHYWNVGKAYFSQNKDKLHLWTEERRKELDDGR 269
Query 149 IETLVQ 154
+E ++
Sbjct 270 VEDVIN 275
>gi|224369094|ref|YP_002603258.1| hypothetical protein HRM2_19930 [Desulfobacterium autotrophicum
HRM2]
gi|223691811|gb|ACN15094.1| hypothetical protein HRM2_19930 [Desulfobacterium autotrophicum
HRM2]
Length=437
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 35/69 (51%), Gaps = 3/69 (4%)
Query 79 LLPLPHLRAW---DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSD 135
L+P +R DGAPWIWN + P + ++D YH +++HD+A + +
Sbjct 244 LIPEKKVRICVIGDGAPWIWNRIKEVYPNSKKVLDYYHCSEYLHDVANAQYGKNTQKARE 303
Query 136 WLTARLVDL 144
W+ A L L
Sbjct 304 WVEATLTRL 312
>gi|308275193|emb|CBX31790.1| hypothetical protein N47_N26150 [uncultured Desulfobacterium
sp.]
Length=361
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 33/66 (50%), Gaps = 0/66 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGD 148
DGA WIWN+A A IVDL+HAR+H ++ + W R +LD G
Sbjct 200 DGAIWIWNIADEQFYGAIQIVDLFHAREHYWNVGKAYFSQNKDKLHLWTEERRKELDDGR 259
Query 149 IETLVQ 154
+E ++
Sbjct 260 VEDVMN 265
>gi|308271935|emb|CBX28543.1| hypothetical protein N47_G38670 [uncultured Desulfobacterium
sp.]
Length=371
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 33/66 (50%), Gaps = 0/66 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGD 148
DGA WIWN+A A IVDL+HAR+H ++ + W R +LD G
Sbjct 210 DGAIWIWNIADEQFYGAIQIVDLFHAREHYWNVGKAYFSQNKDKLHLWTEERRKELDDGR 269
Query 149 IETLVQ 154
+E ++
Sbjct 270 VEDVMN 275
>gi|308275284|emb|CBX31880.1| hypothetical protein N47_O12990 [uncultured Desulfobacterium
sp.]
Length=182
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 32/66 (49%), Gaps = 0/66 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQLAPALGEHHSDWLTARLVDLDSGD 148
DGA WIWN+A A IVDL+HAR+H ++ + W R LD G
Sbjct 21 DGAIWIWNIADQQFYGAIQIVDLFHAREHYWNVGKAYFSQNKDKLHLWTEERRKKLDDGR 80
Query 149 IETLVQ 154
+E ++
Sbjct 81 VEDVMN 86
>gi|168698411|ref|ZP_02730688.1| hypothetical protein GobsU_02753 [Gemmata obscuriglobus UQM 2246]
Length=305
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (57%), Positives = 24/30 (80%), Gaps = 0/30 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHV 118
DGA WIWNLA +LP+A ++D+YHA +H+
Sbjct 146 DGAEWIWNLAADVLPQAAGVLDVYHAAEHI 175
>gi|258404509|ref|YP_003197251.1| hypothetical protein Dret_0372 [Desulfohalobium retbaense DSM
5692]
gi|258404532|ref|YP_003197274.1| hypothetical protein Dret_0398 [Desulfohalobium retbaense DSM
5692]
gi|257796736|gb|ACV67673.1| conserved hypothetical protein [Desulfohalobium retbaense DSM
5692]
gi|257796759|gb|ACV67696.1| conserved hypothetical protein [Desulfohalobium retbaense DSM
5692]
Length=466
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAG 123
DGA WIW P+A I+D YH ++H+H+ A
Sbjct 286 DGAGWIWEAMEEAFPDARQILDYYHCQEHIHEFAN 320
>gi|258406638|ref|YP_003199379.1| hypothetical protein Dret_2521 [Desulfohalobium retbaense DSM
5692]
gi|257798865|gb|ACV69801.1| conserved hypothetical protein [Desulfohalobium retbaense DSM
5692]
Length=371
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAG 123
DGA WIW P+A I+D YH ++H+H+ A
Sbjct 191 DGAGWIWEAMEEAFPDARQILDYYHCQEHIHEFAN 225
>gi|258405078|ref|YP_003197820.1| hypothetical protein Dret_0954 [Desulfohalobium retbaense DSM
5692]
gi|257797305|gb|ACV68242.1| conserved hypothetical protein [Desulfohalobium retbaense DSM
5692]
Length=466
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLAG 123
DGA WIW P+A I+D YH ++H+H+ A
Sbjct 286 DGAGWIWEAMEEAFPDARQILDYYHCQEHIHEFAN 320
>gi|338213760|ref|YP_004657815.1| hypothetical protein Runsl_4352 [Runella slithyformis DSM 19594]
gi|336307581|gb|AEI50683.1| hypothetical protein Runsl_4352 [Runella slithyformis DSM 19594]
Length=412
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/76 (37%), Positives = 36/76 (48%), Gaps = 3/76 (3%)
Query 67 RYRAGPGPVAPRLLPLPH--LRAWDGAPWIWNLATAILPEATPIVDLYHARQHVHDLAGQ 124
+ A PV R L + DGA WI +L P+AT I+DLYH HV + AG
Sbjct 226 EFSAKVMPVVDRYNTLEENVVGISDGAIWIRHLMEKACPKATLILDLYHCLGHVSE-AGV 284
Query 125 LAPALGEHHSDWLTAR 140
A G+ DWL +
Sbjct 285 AAFGSGKRAIDWLNTQ 300
>gi|298571345|gb|ADI87688.1| unknown protein [uncultured Nitrospirae bacterium MY2-3C]
Length=437
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/37 (41%), Positives = 24/37 (65%), Gaps = 0/37 (0%)
Query 82 LPHLRAWDGAPWIWNLATAILPEATPIVDLYHARQHV 118
+ H+ DGAPWIW+ A+ P A ++D YHA +++
Sbjct 277 VKHVIVGDGAPWIWDYASTYHPGAIQVLDYYHASEYL 313
>gi|168705582|ref|ZP_02737859.1| hypothetical protein GobsU_38978 [Gemmata obscuriglobus UQM 2246]
Length=160
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHV-HDLAGQLAPALGEHHSDWLTARLVDLDSG 147
DGA WIWN P A ++D++HA ++V H G L A D TAR +L G
Sbjct 1 DGAEWIWNRTAEAFPNARGVLDIFHALEYVSHAARGYLVNA--PEAVDEATARGRELLLG 58
Query 148 DIETLVQQPIGQ 159
D T V +G+
Sbjct 59 DGYTGVVDWVGE 70
>gi|168697946|ref|ZP_02730223.1| hypothetical protein GobsU_00380 [Gemmata obscuriglobus UQM 2246]
Length=348
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHV-HDLAGQLAPALGEHHSDWLTARLVDLDSG 147
DGA WIWN P A ++D++HA ++V H G L A D TAR +L G
Sbjct 189 DGAEWIWNRTAEAFPNARGVLDIFHALEYVSHAARGYLVNA--PEAVDEATARGRELLLG 246
Query 148 DIETLVQQPIGQ 159
D T V +G+
Sbjct 247 DGYTGVVDWVGE 258
>gi|311111564|ref|ZP_07712961.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
gi|311066718|gb|EFQ47058.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
Length=393
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/113 (30%), Positives = 47/113 (42%), Gaps = 5/113 (4%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATP 107
HRL + LR ++ L Q+ Y A LPH + W + AT IL P
Sbjct 206 HRLNMQKLRGIKVLVDQDSAYTAHTTLGKEPEELLPHEKNWASLLASFGFATTIL----P 261
Query 108 IVDLYHARQHVHDLAGQLAPAL-GEHHSDWLTARLVDLDSGDIETLVQQPIGQ 159
+ D +AGQL L E ++ +T V LD I+ L+ + IG
Sbjct 262 VQDDLAIENQTIAIAGQLLRNLSNEQITNLITKNTVLLDGESIQVLLDRKIGN 314
>gi|301058040|ref|ZP_07199095.1| conserved hypothetical protein [delta proteobacterium NaphS2]
gi|300447866|gb|EFK11576.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length=105
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/34 (39%), Positives = 20/34 (59%), Gaps = 0/34 (0%)
Query 89 DGAPWIWNLATAILPEATPIVDLYHARQHVHDLA 122
DGA W+W A P+ ++D YH +H+H +A
Sbjct 61 DGADWLWKHMKACFPQGRQVLDYYHCAEHIHKVA 94
>gi|268318577|ref|YP_003292233.1| hypothetical protein FI9785_78 [Lactobacillus johnsonii FI9785]
gi|262396952|emb|CAX65966.1| hypothetical protein FI9785_78 [Lactobacillus johnsonii FI9785]
Length=672
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 32/112 (29%), Positives = 48/112 (43%), Gaps = 5/112 (4%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATP 107
HRL + LR ++ L Q+ Y A LPH + W ++ AT IL P
Sbjct 363 HRLNMKELRGIKVLVDQDSAYTAHTTLGKEPEELLPHEKNWASLLASFSFATTIL----P 418
Query 108 IVDLYHARQHVHDLAGQLAPALGEHH-SDWLTARLVDLDSGDIETLVQQPIG 158
I D + +AGQL L + + +T V LD I+ L+ + +G
Sbjct 419 IQDNFEIEDQTIAIAGQLLRNLTDSQITKLITQNTVLLDGESIQVLLDRDLG 470
>gi|338761951|gb|EGP13220.1| hypothetical protein PF01_01511 [Lactobacillus johnsonii pf01]
Length=672
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 34/114 (30%), Positives = 50/114 (44%), Gaps = 9/114 (7%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGP--GPVAPRLLPLPHLRAWDGAPWIWNLATAILPEA 105
HRL + LR ++ L Q+ Y A G LLP H + W ++ AT IL
Sbjct 363 HRLNMKELRGIKVLVDQDSAYTAHTTWGKQPEELLP--HEKNWASLLASFSFATTIL--- 417
Query 106 TPIVDLYHARQHVHDLAGQLAPALGEHH-SDWLTARLVDLDSGDIETLVQQPIG 158
PI D + +AGQL L + + +T V LD I+ L+ + +G
Sbjct 418 -PIQDNFEIEDQTIAIAGQLLRNLTDSQITKLITQNTVLLDGESIQVLLDRDLG 470
>gi|329666407|gb|AEB92355.1| hypothetical protein LJP_0016c [Lactobacillus johnsonii DPC 6026]
Length=672
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 32/112 (29%), Positives = 48/112 (43%), Gaps = 5/112 (4%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATP 107
HRL + LR ++ L Q+ Y A LPH + W ++ AT IL P
Sbjct 363 HRLNMKELRGIKVLVDQDSAYTAHTTLGKEPEELLPHEKNWASLLASFSFATTIL----P 418
Query 108 IVDLYHARQHVHDLAGQLAPALGEHH-SDWLTARLVDLDSGDIETLVQQPIG 158
I D + +AGQL L + + +T V LD I+ L+ + +G
Sbjct 419 IQDNFEIEDQTIAIAGQLLRNLTDSQITKLITQNTVLLDGESIQVLLDRDLG 470
>gi|42518100|ref|NP_964030.1| hypothetical protein LJ0015 [Lactobacillus johnsonii NCC 533]
gi|41582384|gb|AAS07996.1| hypothetical protein LJ_0015 [Lactobacillus johnsonii NCC 533]
Length=672
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 34/114 (30%), Positives = 50/114 (44%), Gaps = 9/114 (7%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGP--GPVAPRLLPLPHLRAWDGAPWIWNLATAILPEA 105
HRL + LR ++ L Q+ Y A G LLP H + W ++ AT IL
Sbjct 363 HRLNMKELRGIKVLVDQDSAYTAHTTWGKEPEELLP--HEKNWASLLASFSFATTIL--- 417
Query 106 TPIVDLYHARQHVHDLAGQLAPALGEHH-SDWLTARLVDLDSGDIETLVQQPIG 158
PI D + +AGQL L + + +T V LD I+ L+ + +G
Sbjct 418 -PIQDNFEIEDQTIAIAGQLLRNLTDSQITKLITQNTVLLDGESIQVLLDRDLG 470
>gi|282852332|ref|ZP_06261674.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
gi|282556074|gb|EFB61694.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
Length=672
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 33/112 (30%), Positives = 47/112 (42%), Gaps = 5/112 (4%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATP 107
HRL + LR ++ L Q+ Y A LPH + W + AT IL P
Sbjct 363 HRLNMQKLRGIKVLVDQDSAYTAHTTLGKEPEELLPHEKNWASLLASFGFATTIL----P 418
Query 108 IVDLYHARQHVHDLAGQLAPALG-EHHSDWLTARLVDLDSGDIETLVQQPIG 158
+ D +AGQL L E ++ +T V LD I+ L+ + IG
Sbjct 419 VQDDLAIENQTIAIAGQLLRNLSNEQITNLITKNTVLLDGESIQVLLDRKIG 470
>gi|238853354|ref|ZP_04643734.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|238834042|gb|EEQ26299.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
Length=672
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 33/112 (30%), Positives = 47/112 (42%), Gaps = 5/112 (4%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATP 107
HRL + LR ++ L Q+ Y A LPH + W + AT IL P
Sbjct 363 HRLNMQKLRGIKVLVDQDSAYTAHTTLGKEPEELLPHEKNWASLLASFGFATTIL----P 418
Query 108 IVDLYHARQHVHDLAGQLAPALG-EHHSDWLTARLVDLDSGDIETLVQQPIG 158
+ D +AGQL L E ++ +T V LD I+ L+ + IG
Sbjct 419 VQDDLAIENQTIAIAGQLLRNLSNEQITNLITKNTVLLDGESIQVLLDRKIG 470
>gi|116628699|ref|YP_813871.1| hypothetical protein LGAS_0016 [Lactobacillus gasseri ATCC 33323]
gi|116094281|gb|ABJ59433.1| hypothetical protein LGAS_0016 [Lactobacillus gasseri ATCC 33323]
Length=672
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 33/112 (30%), Positives = 47/112 (42%), Gaps = 5/112 (4%)
Query 48 HRLRARALRVVRRLPRQEPRYRAGPGPVAPRLLPLPHLRAWDGAPWIWNLATAILPEATP 107
HRL + LR ++ L Q+ Y A LPH + W + AT IL P
Sbjct 363 HRLNMQKLRGIKVLVDQDSAYTAHTTLGKEPEELLPHEKNWASLLASFGFATTIL----P 418
Query 108 IVDLYHARQHVHDLAGQLAPALG-EHHSDWLTARLVDLDSGDIETLVQQPIG 158
+ D +AGQL L E ++ +T V LD I+ L+ + IG
Sbjct 419 VQDDLAIENQTIAIAGQLLRNLSNEQITNLITKNTVLLDGESIQVLLDRKIG 470
>gi|91789359|ref|YP_550311.1| thiol:disulfide interchange protein DsbC [Polaromonas sp. JS666]
gi|91698584|gb|ABE45413.1| thiol:disulfide interchange protein DsbC [Polaromonas sp. JS666]
Length=237
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 29/64 (46%), Gaps = 3/64 (4%)
Query 2 RSRSVRWDPRCRPGRSGVGDPHCDDPAGLLAAGAAAGRRHRAPGPAHRLRARALRVVRRL 61
+ R WD RPG G +CD+P +A +RHR G + A R+V +
Sbjct 166 KDRVKAWDDAMRPGTVPTGAANCDNP---IAKIIDFAKRHRITGTPTTILADGRRLVGAV 222
Query 62 PRQE 65
PR E
Sbjct 223 PRAE 226
Lambda K H
0.322 0.140 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129330420882
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40