BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3124
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
gi|148824317|ref|YP_001289071.1| transcriptional regulator [Myco... 589 2e-166
gi|15842697|ref|NP_337734.1| AfsR/DnrI/RedD family transcription... 588 3e-166
gi|15610261|ref|NP_217640.1| transcriptional regulatory protein ... 586 1e-165
gi|121639005|ref|YP_979229.1| putative transcriptional regulator... 583 8e-165
gi|167970210|ref|ZP_02552487.1| transcriptional regulator, AfsR/... 532 3e-149
gi|183984126|ref|YP_001852417.1| transcriptional regulatory prot... 300 2e-79
gi|118619217|ref|YP_907549.1| transcriptional regulatory protein... 297 1e-78
gi|15608407|ref|NP_215783.1| transcriptional regulatory protein ... 296 2e-78
gi|308231799|ref|ZP_07413772.2| transcriptional regulator embR [... 296 3e-78
gi|339631335|ref|YP_004722977.1| transcriptional regulator [Myco... 296 3e-78
gi|289442705|ref|ZP_06432449.1| transcriptional regulator embR [... 292 5e-77
gi|308371311|ref|ZP_07667133.1| transcriptional regulatory prote... 287 1e-75
gi|342858086|ref|ZP_08714742.1| transcriptional regulator [Mycob... 287 1e-75
gi|15842920|ref|NP_337957.1| AfsR/DnrI/RedD family transcription... 287 1e-75
gi|308377303|ref|ZP_07668478.1| transcriptional regulatory prote... 287 1e-75
gi|254365948|ref|ZP_04981993.1| hypothetical protein TBHG_03263 ... 287 1e-75
gi|240173400|ref|ZP_04752058.1| transcriptional regulatory prote... 283 3e-74
gi|183983526|ref|YP_001851817.1| transcriptional regulatory prot... 271 6e-71
gi|306969428|ref|ZP_07482089.1| putative FHA domain protein [Myc... 270 2e-70
gi|254774296|ref|ZP_05215812.1| putative transcriptional regulat... 268 1e-69
gi|41408601|ref|NP_961437.1| EmbR_2 [Mycobacterium avium subsp. ... 268 1e-69
gi|336458611|gb|EGO37578.1| DNA-binding transcriptional activato... 267 1e-69
gi|118465098|ref|YP_880660.1| transcriptional regulator [Mycobac... 267 1e-69
gi|336461580|gb|EGO40446.1| DNA-binding transcriptional activato... 263 3e-68
gi|118467005|ref|YP_879519.1| EmbR protein [Mycobacterium avium ... 263 3e-68
gi|41406328|ref|NP_959164.1| EmbR_1 [Mycobacterium avium subsp. ... 262 4e-68
gi|254773284|ref|ZP_05214800.1| EmbR protein [Mycobacterium aviu... 261 1e-67
gi|124491181|gb|ABN12925.1| EmbR [Mycobacterium tuberculosis] 252 5e-65
gi|124491183|gb|ABN12926.1| EmbR [Mycobacterium tuberculosis] 248 6e-64
gi|342860050|ref|ZP_08716702.1| EmbR protein [Mycobacterium colo... 246 3e-63
gi|183980951|ref|YP_001849242.1| transcriptional regulatory prot... 241 1e-61
gi|124491171|gb|ABN12920.1| EmbR [Mycobacterium tuberculosis] 239 4e-61
gi|111017531|ref|YP_700503.1| EmbR family transcriptional regula... 234 8e-60
gi|124491177|gb|ABN12923.1| EmbR [Mycobacterium tuberculosis] 234 1e-59
gi|289749819|ref|ZP_06509197.1| transcriptional regulator embR [... 212 6e-53
gi|111026922|ref|YP_708900.1| transcriptional regulator [Rhodoco... 190 2e-46
gi|54027355|ref|YP_121597.1| putative transcriptional regulator ... 169 5e-40
gi|296138442|ref|YP_003645685.1| SARP family transcriptional reg... 165 7e-39
gi|159038648|ref|YP_001537901.1| SARP family transcriptional reg... 153 3e-35
gi|134097102|ref|YP_001102763.1| SARP family transcriptional reg... 150 2e-34
gi|256379282|ref|YP_003102942.1| SARP family transcriptional reg... 144 1e-32
gi|312198069|ref|YP_004018130.1| SARP family transcriptional reg... 144 2e-32
gi|238064278|ref|ZP_04608987.1| transcriptional regulator [Micro... 140 2e-31
gi|258652403|ref|YP_003201559.1| SARP family transcriptional reg... 139 4e-31
gi|300788234|ref|YP_003768525.1| SARP family transcriptional reg... 138 1e-30
gi|256378710|ref|YP_003102370.1| SARP family transcriptional reg... 138 1e-30
gi|330468374|ref|YP_004406117.1| SARP family transcriptional reg... 137 2e-30
gi|271962756|ref|YP_003336952.1| SARP family transcriptional reg... 137 2e-30
gi|8100065|dbj|BAA96296.1| Orf2 [Streptomyces virginiae] 137 2e-30
gi|238632104|gb|ACR50789.1| putative pathway specific activator ... 137 3e-30
>gi|148824317|ref|YP_001289071.1| transcriptional regulator [Mycobacterium tuberculosis F11]
gi|253800156|ref|YP_003033157.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289555398|ref|ZP_06444608.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
14 more sequence titles
Length=297
Score = 589 bits (1518), Expect = 2e-166, Method: Compositional matrix adjust.
Identities = 289/289 (100%), Positives = 289/289 (100%), Gaps = 0/289 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR
Sbjct 9 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 68
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG
Sbjct 69 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 128
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV
Sbjct 129 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 188
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA
Sbjct 189 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 248
Query 241 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 289
LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA
Sbjct 249 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 297
>gi|15842697|ref|NP_337734.1| AfsR/DnrI/RedD family transcriptional regulator [Mycobacterium
tuberculosis CDC1551]
gi|254233748|ref|ZP_04927073.1| hypothetical protein TBCG_03061 [Mycobacterium tuberculosis C]
gi|308232344|ref|ZP_07415775.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
20 more sequence titles
Length=311
Score = 588 bits (1516), Expect = 3e-166, Method: Compositional matrix adjust.
Identities = 289/289 (100%), Positives = 289/289 (100%), Gaps = 0/289 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR
Sbjct 23 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 82
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG
Sbjct 83 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 142
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV
Sbjct 143 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 202
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA
Sbjct 203 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 262
Query 241 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 289
LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA
Sbjct 263 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 311
>gi|15610261|ref|NP_217640.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|31794299|ref|NP_856792.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|148662978|ref|YP_001284501.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
31 more sequence titles
Length=289
Score = 586 bits (1511), Expect = 1e-165, Method: Compositional matrix adjust.
Identities = 288/289 (99%), Positives = 289/289 (100%), Gaps = 0/289 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+QFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR
Sbjct 1 MQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG
Sbjct 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV
Sbjct 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA
Sbjct 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
Query 241 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 289
LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA
Sbjct 241 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 289
>gi|121639005|ref|YP_979229.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224991497|ref|YP_002646186.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|121494653|emb|CAL73134.1| Probable transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774612|dbj|BAH27418.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|341603044|emb|CCC65722.1| probable transcriptional regulatory protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=289
Score = 583 bits (1504), Expect = 8e-165, Method: Compositional matrix adjust.
Identities = 287/289 (99%), Positives = 288/289 (99%), Gaps = 0/289 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+QFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR
Sbjct 1 MQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG
Sbjct 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALT DELLVHTKLAEAAIACGRADV
Sbjct 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTGDELLVHTKLAEAAIACGRADV 180
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA
Sbjct 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
Query 241 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 289
LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA
Sbjct 241 LYHKILRQLPMDDLVGRVTRGRVDLRGGNGAKVEELTESDKDLLPIGLA 289
>gi|167970210|ref|ZP_02552487.1| transcriptional regulator, AfsR/DnrI/RedD family protein [Mycobacterium
tuberculosis H37Ra]
gi|254552209|ref|ZP_05142656.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
Length=262
Score = 532 bits (1370), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 261/262 (99%), Positives = 262/262 (100%), Gaps = 0/262 (0%)
Query 28 VLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVDSRNILVSE 87
+LAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVDSRNILVSE
Sbjct 1 MLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVDSRNILVSE 60
Query 88 PPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLDSALQNWRGPVLGDLRSF 147
PPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLDSALQNWRGPVLGDLRSF
Sbjct 61 PPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLDSALQNWRGPVLGDLRSF 120
Query 148 MFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVAMHPYRESLWKQLMLGYY 207
MFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVAMHPYRESLWKQLMLGYY
Sbjct 121 MFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVAMHPYRESLWKQLMLGYY 180
Query 208 VNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKILRQLPMDDLVGRVTRGRVDLRG 267
VNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKILRQLPMDDLVGRVTRGRVDLRG
Sbjct 181 VNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKILRQLPMDDLVGRVTRGRVDLRG 240
Query 268 GNGAKVEELTESDKDLLPIGLA 289
GNGAKVEELTESDKDLLPIGLA
Sbjct 241 GNGAKVEELTESDKDLLPIGLA 262
>gi|183984126|ref|YP_001852417.1| transcriptional regulatory protein EmbR [Mycobacterium marinum
M]
gi|183177452|gb|ACC42562.1| transcriptional regulatory protein EmbR [Mycobacterium marinum
M]
Length=386
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/252 (57%), Positives = 186/252 (74%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+ + G +PLGTPKQRAVLAML+++RN+ V D+L+ A+WE+ PPA AR
Sbjct 11 LEFGLLGPLEMTIDGELVPLGTPKQRAVLAMLVINRNRPVGVDSLITALWEEWPPAGARA 70
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS AGVD R +L + PPGYRL I D CDL RF+A K +G+ A+A G
Sbjct 71 SIHSYVSNLRKLLSGAGVDPRAMLAAAPPGYRLSIPD-STCDLGRFIAEKTAGVHAAAAG 129
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A ++L AL WRGPVL DLR F FV F+ AL ED++L HT AEA IACGRA
Sbjct 130 KFEQASQHLSRALTQWRGPVLDDLRDFQFVDAFATALVEDKILAHTAKAEAEIACGRAAA 189
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L A HPYRE LW QL+ YY+ + QS A+ AY R+K+TLAE+LG++P PT+RA
Sbjct 190 VITELEALTAEHPYREPLWTQLITAYYLTDRQSDALGAYRRVKTTLAEDLGIDPGPTLRA 249
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 250 LNERILRQEPLD 261
>gi|118619217|ref|YP_907549.1| transcriptional regulatory protein EmbR [Mycobacterium ulcerans
Agy99]
gi|118571327|gb|ABL06078.1| transcriptional regulatory protein EmbR [Mycobacterium ulcerans
Agy99]
Length=386
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/252 (56%), Positives = 185/252 (74%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+ + G +PLGTPKQRAVLAML+++RN+ V D+L+ A+WE+ PPA AR
Sbjct 11 LEFGLLGPLEMTIDGELVPLGTPKQRAVLAMLVINRNRPVGVDSLITALWEEWPPAGARA 70
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS AGVD R +L + PPGYRL I D CDL RF+A K +G+ A+A G
Sbjct 71 SIHSYVSNLRKLLSGAGVDPRAMLATAPPGYRLSIPD-STCDLGRFIAEKTAGVHAAAAG 129
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A ++L AL WRGPVL DLR F FV F+ AL ED++L HT AEA IACGRA
Sbjct 130 KFEQASQHLSRALAQWRGPVLDDLRDFQFVDAFATALVEDKILAHTAKAEAEIACGRAAA 189
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L A HPYRE LW QL+ YY+ + QS A+ AY R+K+TLAE+L ++P PT+RA
Sbjct 190 VITELEALTAEHPYREPLWTQLITAYYLTDRQSDALGAYRRVKTTLAEDLSIDPGPTLRA 249
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 250 LNERILRQEPLD 261
>gi|15608407|ref|NP_215783.1| transcriptional regulatory protein EMBR [Mycobacterium tuberculosis
H37Rv]
gi|15840713|ref|NP_335750.1| AfsR/DnrI/RedD family transcriptional regulator [Mycobacterium
tuberculosis CDC1551]
gi|31792459|ref|NP_854952.1| transcriptional regulatory protein EMBR [Mycobacterium bovis
AF2122/97]
48 more sequence titles
Length=388
Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/252 (56%), Positives = 187/252 (75%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G
Sbjct 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAG 129
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA
Sbjct 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++P PT+RA
Sbjct 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 250 LNERILRQQPLD 261
>gi|308231799|ref|ZP_07413772.2| transcriptional regulator embR [Mycobacterium tuberculosis SUMu001]
gi|308370010|ref|ZP_07419989.2| transcriptional regulator embR [Mycobacterium tuberculosis SUMu002]
gi|308370677|ref|ZP_07422309.2| transcriptional regulator embR [Mycobacterium tuberculosis SUMu003]
22 more sequence titles
Length=382
Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 139/252 (56%), Positives = 187/252 (75%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 5 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 64
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G
Sbjct 65 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAG 123
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA
Sbjct 124 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 183
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++P PT+RA
Sbjct 184 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 243
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 244 LNERILRQQPLD 255
>gi|339631335|ref|YP_004722977.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|339330691|emb|CCC26360.1| putative transcriptional regulatory protein EMBR [Mycobacterium
africanum GM041182]
Length=388
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/252 (55%), Positives = 187/252 (75%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G
Sbjct 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAG 129
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA
Sbjct 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA+++G++P PT+RA
Sbjct 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDVGIDPGPTLRA 249
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 250 LNERILRQQPLD 261
>gi|289442705|ref|ZP_06432449.1| transcriptional regulator embR [Mycobacterium tuberculosis T46]
gi|289569276|ref|ZP_06449503.1| transcriptional regulator embR [Mycobacterium tuberculosis T17]
gi|289753343|ref|ZP_06512721.1| transcriptional regulatory protein embR [Mycobacterium tuberculosis
EAS054]
gi|289415624|gb|EFD12864.1| transcriptional regulator embR [Mycobacterium tuberculosis T46]
gi|289543030|gb|EFD46678.1| transcriptional regulator embR [Mycobacterium tuberculosis T17]
gi|289693930|gb|EFD61359.1| transcriptional regulatory protein embR [Mycobacterium tuberculosis
EAS054]
Length=388
Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/252 (55%), Positives = 186/252 (74%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D DL RFVA K +G+ A+A G
Sbjct 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTYDLGRFVAEKTAGVHAAAAG 129
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA
Sbjct 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++P PT+RA
Sbjct 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 250 LNERILRQQPLD 261
>gi|308371311|ref|ZP_07667133.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu003]
gi|308329350|gb|EFP18201.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu003]
Length=334
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/255 (54%), Positives = 183/255 (72%), Gaps = 1/255 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE++ LPLGTPKQRAVLA L++ RN+ V D+L+ A WE+ P +R
Sbjct 7 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 66
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TV+TY+ NLRR +S G DS +IL S PPGYRL + D Q D+ RF++ + +GLRA+A G
Sbjct 67 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVAD-NQYDVARFISQRSAGLRAAAAG 125
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DLR F FV + +L ED+++ HT LAEA IACGRAD
Sbjct 126 SFEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADS 185
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L+ HPY E+LW+QL+ YYV+E QS A+DAY RLK++LAE+LGV+P P +R
Sbjct 186 VISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRT 245
Query 241 LYHKILRQLPMDDLV 255
LY ++LRQ +D V
Sbjct 246 LYEQVLRQQALDTRV 260
>gi|342858086|ref|ZP_08714742.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
gi|342135419|gb|EGT88585.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
Length=419
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/252 (54%), Positives = 185/252 (74%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+++ G +PLGTPKQRAVLAMLL++RN V D L+ A+W++SPP+ AR
Sbjct 46 LEFGLLGPLEMSVDGALVPLGTPKQRAVLAMLLMNRNSPVGVDRLITALWDESPPSGARA 105
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS AGVD R++LV+ PPGYRL I D CDL RF+ K +G+ A+A G
Sbjct 106 SLHSYVSNLRKLLSGAGVDPRSVLVAAPPGYRLNIPD-DTCDLGRFIVEKTAGVHAAAAG 164
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL WRGPVL DL F FV F+ +L E+++L HT AEA IACGRA
Sbjct 165 RFEQASRHLSAALAEWRGPVLEDLEDFRFVDAFTASLVEEKILTHTAQAEAEIACGRAFT 224
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L A HPYRE LW QLM YY+++ QS A+ AY R++ +LA++LG++P +RA
Sbjct 225 VITELEALTAEHPYREQLWAQLMTAYYLSDRQSDALAAYRRVQKSLADDLGIDPGQNLRA 284
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 285 LNDRILRQEPLD 296
>gi|15842920|ref|NP_337957.1| AfsR/DnrI/RedD family transcriptional regulator [Mycobacterium
tuberculosis CDC1551]
gi|31794510|ref|NP_857003.1| transcriptional regulatory protein EmbR2 [Mycobacterium bovis
AF2122/97]
gi|121639253|ref|YP_979477.1| putative transcriptional regulatory protein embR2 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
29 more sequence titles
Length=381
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/255 (54%), Positives = 183/255 (72%), Gaps = 1/255 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE++ LPLGTPKQRAVLA L++ RN+ V D+L+ A WE+ P +R
Sbjct 6 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 65
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TV+TY+ NLRR +S G DS +IL S PPGYRL + D Q D+ RF++ + +GLRA+A G
Sbjct 66 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVAD-NQYDVARFISQRSAGLRAAAAG 124
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DLR F FV + +L ED+++ HT LAEA IACGRAD
Sbjct 125 SFEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADS 184
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L+ HPY E+LW+QL+ YYV+E QS A+DAY RLK++LAE+LGV+P P +R
Sbjct 185 VISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRT 244
Query 241 LYHKILRQLPMDDLV 255
LY ++LRQ +D V
Sbjct 245 LYEQVLRQQALDTRV 259
>gi|308377303|ref|ZP_07668478.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu008]
gi|308348439|gb|EFP37290.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu008]
Length=333
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/255 (54%), Positives = 183/255 (72%), Gaps = 1/255 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE++ LPLGTPKQRAVLA L++ RN+ V D+L+ A WE+ P +R
Sbjct 6 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 65
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TV+TY+ NLRR +S G DS +IL S PPGYRL + D Q D+ RF++ + +GLRA+A G
Sbjct 66 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVAD-NQYDVARFISQRSAGLRAAAAG 124
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DLR F FV + +L ED+++ HT LAEA IACGRAD
Sbjct 125 SFEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADS 184
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L+ HPY E+LW+QL+ YYV+E QS A+DAY RLK++LAE+LGV+P P +R
Sbjct 185 VISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRT 244
Query 241 LYHKILRQLPMDDLV 255
LY ++LRQ +D V
Sbjct 245 LYEQVLRQQALDTRV 259
>gi|254365948|ref|ZP_04981993.1| hypothetical protein TBHG_03263 [Mycobacterium tuberculosis str.
Haarlem]
gi|134151461|gb|EBA43506.1| hypothetical protein TBHG_03263 [Mycobacterium tuberculosis str.
Haarlem]
gi|323718198|gb|EGB27380.1| hypothetical protein TMMG_02477 [Mycobacterium tuberculosis CDC1551A]
Length=382
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/255 (54%), Positives = 183/255 (72%), Gaps = 1/255 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE++ LPLGTPKQRAVLA L++ RN+ V D+L+ A WE+ P +R
Sbjct 7 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 66
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
TV+TY+ NLRR +S G DS +IL S PPGYRL + D Q D+ RF++ + +GLRA+A G
Sbjct 67 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVAD-NQYDVARFISQRSAGLRAAAAG 125
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DLR F FV + +L ED+++ HT LAEA IACGRAD
Sbjct 126 SFEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADS 185
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L+ HPY E+LW+QL+ YYV+E QS A+DAY RLK++LAE+LGV+P P +R
Sbjct 186 VISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRT 245
Query 241 LYHKILRQLPMDDLV 255
LY ++LRQ +D V
Sbjct 246 LYEQVLRQQALDTRV 260
>gi|240173400|ref|ZP_04752058.1| transcriptional regulatory protein EmbR [Mycobacterium kansasii
ATCC 12478]
Length=381
Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 140/252 (56%), Positives = 186/252 (74%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+++ G +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 6 LEFGLLGPLEMSIDGALVPTGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 65
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS AGVD R IL + PPGYRL I + CDL RF+A K +G+ A+A G
Sbjct 66 SIHSYVSNLRKLLSGAGVDPRAILAAAPPGYRLSIPE-NSCDLGRFIAEKAAGVHAAAAG 124
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL+ WRGPVL DLR F FV F+ AL ED++L HT AEA IACGRA
Sbjct 125 KFEQASRHLAAALRVWRGPVLDDLRDFQFVNAFATALVEDKILAHTAKAEAEIACGRAAE 184
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QL+ YY+ + QS A+ AY R+K+TLAE+LG++P PT+R
Sbjct 185 VITELEALTVEHPYREPLWAQLITAYYLTDRQSDALSAYRRVKTTLAEDLGIDPGPTLRG 244
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 245 LNERILRQEPLD 256
>gi|183983526|ref|YP_001851817.1| transcriptional regulatory protein EmbR_1 [Mycobacterium marinum
M]
gi|183176852|gb|ACC41962.1| transcriptional regulatory protein EmbR_1 [Mycobacterium marinum
M]
Length=379
Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/252 (52%), Positives = 174/252 (70%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F LGPLE+ + G +PLGTPKQRAVLA LL++RN+ VA DAL++A WE+ PA AR
Sbjct 2 LNFGALGPLEMTIDGVAVPLGTPKQRAVLAALLINRNRPVAIDALIEAAWEQGAPAGARE 61
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
T++ Y+ LRR ++ AG+++R +L + PPGYRL + D DL RFV K +G+RA+A
Sbjct 62 TLYAYVSKLRRLMAGAGIETRELLANMPPGYRLTVAD-GDYDLGRFVTEKNAGVRAAAAS 120
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A + +AL WRGPVL DLR F F+ F+ L E++L+ AE IACGRA
Sbjct 121 GFEQASDHFSAALAQWRGPVLDDLRDFTFLDAFATGLAEEKLVTQIARAEVEIACGRAQS 180
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
V +LE L HPYRE LW QL+ YY+ E QS A+DAY RL+ LA++LGV+PAPT+RA
Sbjct 181 VTGELEGLTTDHPYREPLWVQLITAYYLAERQSDALDAYRRLRDRLADDLGVDPAPTVRA 240
Query 241 LYHKILRQLPMD 252
LY +ILRQ P+D
Sbjct 241 LYGRILRQRPLD 252
>gi|306969428|ref|ZP_07482089.1| putative FHA domain protein [Mycobacterium tuberculosis SUMu009]
gi|308353035|gb|EFP41886.1| putative FHA domain protein [Mycobacterium tuberculosis SUMu009]
Length=357
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 128/236 (55%), Positives = 170/236 (73%), Gaps = 1/236 (0%)
Query 20 LGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVD 79
+GTPKQRAVLA L++ RN+ V D+L+ A WE+ P +R TV+TY+ NLRR +S G D
Sbjct 1 MGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRATVYTYVSNLRRLVSTTGAD 60
Query 80 SRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLDSALQNWRGP 139
S +IL S PPGYRL + D Q D+ RF++ + +GLRA+A G F +A +L +AL WRGP
Sbjct 61 SHSILASAPPGYRLAVAD-NQYDVARFISQRSAGLRAAAAGSFEQASDHLSAALAEWRGP 119
Query 140 VLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVAMHPYRESLW 199
VL DLR F FV + +L ED+++ HT LAEA IACGRAD VI +LE L+ HPY E+LW
Sbjct 120 VLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADSVISELEELILEHPYHEALW 179
Query 200 KQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKILRQLPMDDLV 255
+QL+ YYV+E QS A+DAY RLK++LAE+LGV+P P +R LY ++LRQ +D V
Sbjct 180 RQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRTLYEQVLRQQALDTRV 235
>gi|254774296|ref|ZP_05215812.1| putative transcriptional regulator [Mycobacterium avium subsp.
avium ATCC 25291]
Length=381
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/252 (52%), Positives = 180/252 (72%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+ + G +PLGTPKQRAVLAMLL++RN V D L+ +W++SPP+ AR
Sbjct 6 LEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGARA 65
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS+AGVD R +LV+ PPGYRL I D +CDL RF+ K +G++A+A G
Sbjct 66 SLHSYVSNLRKMLSNAGVDPRTVLVAAPPGYRLNIPD-DRCDLGRFITEKTAGVQAAASG 124
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DL F FV F+ +L E+++L H AEA IACGRA
Sbjct 125 RFEQAGAHLAAALAQWRGPVLEDLAEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAFS 184
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QLM YY+ + QS A+ AY R++ +LA++LG++P +R
Sbjct 185 VITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLRM 244
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 245 LNDRILRQEPLD 256
>gi|41408601|ref|NP_961437.1| EmbR_2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396959|gb|AAS04820.1| EmbR_2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=380
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/252 (52%), Positives = 180/252 (72%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+ + G +PLGTPKQRAVLAMLL++RN V D L+ +W++SPP+ AR
Sbjct 5 LEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGARA 64
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS+AGVD R +LV+ PPGYRL I D +CDL RF+ K +G++A+A G
Sbjct 65 SLHSYVSNLRKLLSNAGVDPRTVLVAAPPGYRLNIPD-DRCDLGRFITEKTAGVQAAASG 123
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DL F FV F+ +L E+++L H AEA IACGRA
Sbjct 124 RFEQAGAHLAAALAQWRGPVLEDLTEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAFS 183
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QLM YY+ + QS A+ AY R++ +LA++LG++P +R
Sbjct 184 VITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLRM 243
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 244 LNDRILRQEPLD 255
>gi|336458611|gb|EGO37578.1| DNA-binding transcriptional activator of the SARP family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=417
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/252 (52%), Positives = 180/252 (72%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+ + G +PLGTPKQRAVLAMLL++RN V D L+ +W++SPP+ AR
Sbjct 42 LEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGARA 101
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS+AGVD R +LV+ PPGYRL I D +CDL RF+ K +G++A+A G
Sbjct 102 SLHSYVSNLRKLLSNAGVDPRTVLVAAPPGYRLNIPD-DRCDLGRFITEKTAGVQAAASG 160
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DL F FV F+ +L E+++L H AEA IACGRA
Sbjct 161 RFEQAGAHLAAALAQWRGPVLEDLTEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAFS 220
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QLM YY+ + QS A+ AY R++ +LA++LG++P +R
Sbjct 221 VITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLRM 280
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 281 LNDRILRQEPLD 292
>gi|118465098|ref|YP_880660.1| transcriptional regulator [Mycobacterium avium 104]
gi|118166385|gb|ABK67282.1| putative transcriptional regulator [Mycobacterium avium 104]
Length=381
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/252 (52%), Positives = 180/252 (72%), Gaps = 1/252 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LGPLE+ + G +PLGTPKQRAVLAMLL++RN V D L+ +W++SPP+ AR
Sbjct 6 LEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGARA 65
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ LS+AGVD R +LV+ PPGYRL I D +CDL RF+ K +G++A+A G
Sbjct 66 SLHSYVSNLRKLLSNAGVDPRTVLVAAPPGYRLNIPD-DRCDLGRFITEKTAGVQAAASG 124
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL WRGPVL DL F FV F+ +L E+++L H AEA IACGRA
Sbjct 125 RFEQAGAHLAAALAQWRGPVLEDLAEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAFS 184
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VI +LE L HPYRE LW QLM YY+ + QS A+ AY R++ +LA++LG++P +R
Sbjct 185 VITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLRM 244
Query 241 LYHKILRQLPMD 252
L +ILRQ P+D
Sbjct 245 LNDRILRQEPLD 256
>gi|336461580|gb|EGO40446.1| DNA-binding transcriptional activator of the SARP family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=384
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/249 (53%), Positives = 169/249 (68%), Gaps = 1/249 (0%)
Query 3 FNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTV 62
F VLGPL + G +LPLG PKQRAVLAMLL+ RN+ V+ DAL+ +W +P AR ++
Sbjct 8 FGVLGPLSVTAGGAQLPLGAPKQRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAARTSI 67
Query 63 HTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYF 122
+Y+ LRR L A + +L S PPGY+L + D CDL RF K +G++A+++G F
Sbjct 68 QSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVAD-ADCDLGRFRGHKTAGVQAASRGRF 126
Query 123 SEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVI 182
EA +L +AL+ WRGPVL DL +F FV F+ L E+ + HT AEA IACGRAD VI
Sbjct 127 EEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGVI 186
Query 183 PKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALY 242
+LE LVA HPYRE LW QL+ YYV E QS A+ AY RLK+ LAE LG++P PT++AL
Sbjct 187 GELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKALQ 246
Query 243 HKILRQLPM 251
+ILRQ P+
Sbjct 247 QRILRQEPL 255
>gi|118467005|ref|YP_879519.1| EmbR protein [Mycobacterium avium 104]
gi|1619917|gb|AAC44546.1| EmbR [Mycobacterium avium]
gi|118168292|gb|ABK69189.1| EmbR protein [Mycobacterium avium 104]
Length=384
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/249 (53%), Positives = 169/249 (68%), Gaps = 1/249 (0%)
Query 3 FNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTV 62
F VLGPL + G +LPLG PKQRAVLAMLL+ RN+ V+ DAL+ +W +P AR ++
Sbjct 8 FGVLGPLSVTAGGAQLPLGAPKQRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAARTSI 67
Query 63 HTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYF 122
+Y+ LRR L A + +L S PPGY+L + D CDL RF K +G++A+++G F
Sbjct 68 QSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVAD-ADCDLGRFRGHKTAGVQAASRGRF 126
Query 123 SEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVI 182
EA +L +AL+ WRGPVL DL +F FV F+ L E+ + HT AEA IACGRAD VI
Sbjct 127 EEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGVI 186
Query 183 PKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALY 242
+LE LVA HPYRE LW QL+ YYV E QS A+ AY RLK+ LAE LG++P PT++AL
Sbjct 187 GELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKALQ 246
Query 243 HKILRQLPM 251
+ILRQ P+
Sbjct 247 QRILRQEPL 255
>gi|41406328|ref|NP_959164.1| EmbR_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41394676|gb|AAS02547.1| EmbR_1 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=379
Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/249 (53%), Positives = 169/249 (68%), Gaps = 1/249 (0%)
Query 3 FNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTV 62
F VLGPL + G +LPLG PKQRAVLAMLL+ RN+ V+ DAL+ +W +P AR ++
Sbjct 3 FGVLGPLSVTAGGAQLPLGAPKQRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAARTSI 62
Query 63 HTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYF 122
+Y+ LRR L A + +L S PPGY+L + D CDL RF K +G++A+++G F
Sbjct 63 QSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVAD-ADCDLGRFRGHKTAGVQAASRGRF 121
Query 123 SEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVI 182
EA +L +AL+ WRGPVL DL +F FV F+ L E+ + HT AEA IACGRAD VI
Sbjct 122 EEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGVI 181
Query 183 PKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALY 242
+LE LVA HPYRE LW QL+ YYV E QS A+ AY RLK+ LAE LG++P PT++AL
Sbjct 182 GELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKALQ 241
Query 243 HKILRQLPM 251
+ILRQ P+
Sbjct 242 QRILRQEPL 250
>gi|254773284|ref|ZP_05214800.1| EmbR protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=384
Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/249 (52%), Positives = 169/249 (68%), Gaps = 1/249 (0%)
Query 3 FNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTV 62
F VLGPL + G +LPLG PK+RAVLAMLL+ RN+ V+ DAL+ +W +P AR ++
Sbjct 8 FGVLGPLSVTAGGAQLPLGAPKRRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAARTSI 67
Query 63 HTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYF 122
+Y+ LRR L A + +L S PPGY+L + D CDL RF K +G++A+++G F
Sbjct 68 QSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVAD-ADCDLGRFRGHKTAGVQAASRGRF 126
Query 123 SEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVI 182
EA +L +AL+ WRGPVL DL +F FV F+ L E+ + HT AEA IACGRAD VI
Sbjct 127 EEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGVI 186
Query 183 PKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALY 242
+LE LVA HPYRE LW QL+ YYV E QS A+ AY RLK+ LAE LG++P PT++AL
Sbjct 187 GELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKALQ 246
Query 243 HKILRQLPM 251
+ILRQ P+
Sbjct 247 QRILRQEPL 255
>gi|124491181|gb|ABN12925.1| EmbR [Mycobacterium tuberculosis]
Length=215
Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 120/216 (56%), Positives = 157/216 (73%), Gaps = 1/216 (0%)
Query 6 LGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTY 65
LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR ++H+Y
Sbjct 1 LGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSY 60
Query 66 ICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEA 125
+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G F +A
Sbjct 61 VSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQA 119
Query 126 IRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKL 185
R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA VI +L
Sbjct 120 SRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 179
Query 186 ERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHR 221
E L HPYRE LW QL+ YY+++ QS A+ AY R
Sbjct 180 EALTFEHPYREPLWTQLITAYYLSDRQSEALGAYRR 215
>gi|124491183|gb|ABN12926.1| EmbR [Mycobacterium tuberculosis]
Length=219
Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/213 (55%), Positives = 155/213 (73%), Gaps = 1/213 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 8 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 67
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G
Sbjct 68 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAG 126
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA
Sbjct 127 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 186
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQS 213
VI +LE L HPYRE LW QL+ YY+++ QS
Sbjct 187 VIAELEALTFEHPYREPLWTQLITAYYLSDRQS 219
>gi|342860050|ref|ZP_08716702.1| EmbR protein [Mycobacterium colombiense CECT 3035]
gi|342132428|gb|EGT85657.1| EmbR protein [Mycobacterium colombiense CECT 3035]
Length=369
Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/241 (52%), Positives = 163/241 (68%), Gaps = 1/241 (0%)
Query 11 LNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLR 70
+ GT+L LG PKQRAVLAMLL+ RN+ V+ DAL+ A+W ++P AR ++ +Y+ LR
Sbjct 1 MTANGTQLSLGAPKQRAVLAMLLVHRNRPVSVDALIDAVWGEAPVPAARTSIQSYVSTLR 60
Query 71 RTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLD 130
R L A + +L S PPGY+L + D CDL RF A K +G++A++ G F EA +L
Sbjct 61 RLLRSAVANPNEVLASAPPGYQLSVAD-ADCDLGRFRAHKAAGVQAASLGRFEEASGHLS 119
Query 131 SALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVA 190
+AL WRGPVL DL +F FV F+ L E+ + +T AEA IACGRAD VI +LE LVA
Sbjct 120 AALGEWRGPVLDDLHNFAFVDAFAGMLLEERVASYTARAEAEIACGRADGVIGELEALVA 179
Query 191 MHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKILRQLP 250
HP+RE LW QL+ YYV E QS A+ AY RLK+ LA+ LG++P PT+ AL +ILRQ P
Sbjct 180 RHPFREPLWAQLITAYYVTERQSDALGAYRRLKTALADGLGIDPGPTVNALQQRILRQEP 239
Query 251 M 251
+
Sbjct 240 L 240
>gi|183980951|ref|YP_001849242.1| transcriptional regulatory protein EmbR_2 [Mycobacterium marinum
M]
gi|183174277|gb|ACC39387.1| transcriptional regulatory protein EmbR_2 [Mycobacterium marinum
M]
Length=276
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/249 (50%), Positives = 155/249 (63%), Gaps = 2/249 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+QF +LGPLEL +PLGTPKQRAVLAML++ RN+ V D L+ A WEK PP RAR
Sbjct 6 LQFGILGPLELYSADIVMPLGTPKQRAVLAMLVIHRNRTVGVDRLIDAAWEKRPPERARA 65
Query 61 TVHTYICNLRRTLSDA-GVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAK 119
T+HTY+ NLRR + +D+R +L S PPGYRL + D CDL RF + +G RA+
Sbjct 66 TLHTYVSNLRRLIDTCLCIDARAVLSSAPPGYRLSVAD-NDCDLGRFTVERSNGFRAATL 124
Query 120 GYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRAD 179
G F +A + +AL WRGP+L DL F F + L ED+LL A IACGR
Sbjct 125 GRFEQASDHFSAALAQWRGPILEDLPEFTFFDESATRLEEDKLLTQIAYATTEIACGRPY 184
Query 180 VVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIR 239
I +LE L HPY E LW L+ YYV E Q A++A +L +LAE+LG+ P PTIR
Sbjct 185 SAINELEELATEHPYHEPLWVPLITAYYVAERQFDALNACRQLTRSLAEDLGIAPGPTIR 244
Query 240 ALYHKILRQ 248
AL +ILRQ
Sbjct 245 ALQEQILRQ 253
>gi|124491171|gb|ABN12920.1| EmbR [Mycobacterium tuberculosis]
Length=211
Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/212 (55%), Positives = 151/212 (72%), Gaps = 1/212 (0%)
Query 12 NLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRR 71
+ GT +P G PKQRAVLAML+++RN+ V AL+ A+WE+ PP+ AR ++H+Y+ NLR+
Sbjct 1 TIDGTPVPSGPPKQRAVLAMLVINRNRPVGVHALITALWEEWPPSGARASIHSYVSNLRK 60
Query 72 TLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLDS 131
L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G F +A R+L +
Sbjct 61 LLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSA 119
Query 132 ALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVAM 191
AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA VI +LE L
Sbjct 120 ALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 179
Query 192 HPYRESLWKQLMLGYYVNEYQSAAIDAYHRLK 223
HPYRE LW QL+ YY+++ QS A+ AY R+K
Sbjct 180 HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 211
>gi|111017531|ref|YP_700503.1| EmbR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110817061|gb|ABG92345.1| probable transcriptional regulator, EmbR family protein [Rhodococcus
jostii RHA1]
Length=377
Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/248 (48%), Positives = 164/248 (67%), Gaps = 1/248 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F+VLGP+++ + G PLG PKQRAVLA L+++RN V+A+AL +W PP AR
Sbjct 10 LHFDVLGPVQMTIDGIAPPLGGPKQRAVLAALIINRNHPVSAEALADRVWNHRPPPEARA 69
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
++ +I NLRR L AGVD+R +L S PPGYRL++ D Q CDL RF+A K +G +A+A
Sbjct 70 SLQVFISNLRRILRHAGVDARAVLASAPPGYRLIVPD-QGCDLGRFLAEKRAGTQAAAAR 128
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
F +A +L +AL W+GP L DLR F + F+ A+ E+++ AEA I CGRA+
Sbjct 129 RFEDASGHLAAALAEWKGPALDDLRDLEFAETFAAAIEEEKVSALAARAEAEIVCGRAEA 188
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VIP+L L +++P+RE LW QL+ YV QS A++A RL+S LAEELG++P +
Sbjct 189 VIPELVSLASVYPHREPLWGQLITALYVCGRQSDALEACRRLRSNLAEELGIDPGRDLLE 248
Query 241 LYHKILRQ 248
L +ILRQ
Sbjct 249 LEGRILRQ 256
>gi|124491177|gb|ABN12923.1| EmbR [Mycobacterium tuberculosis]
Length=202
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/203 (55%), Positives = 147/203 (73%), Gaps = 1/203 (0%)
Query 8 PLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYIC 67
PL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR ++H+Y+
Sbjct 1 PLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVS 60
Query 68 NLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIR 127
NLR+ L AG+D R +L + PPGYRL I D DL RFVA K +G+ A+A G F +A R
Sbjct 61 NLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTYDLGRFVAEKTAGVHAAAAGRFEQASR 119
Query 128 YLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLER 187
+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA VI +LE
Sbjct 120 HLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 179
Query 188 LVAMHPYRESLWKQLMLGYYVNE 210
L HPYRE LW QL+ YY+++
Sbjct 180 LTFEHPYREPLWTQLITAYYLSD 202
>gi|289749819|ref|ZP_06509197.1| transcriptional regulator embR [Mycobacterium tuberculosis T92]
gi|289690406|gb|EFD57835.1| transcriptional regulator embR [Mycobacterium tuberculosis T92]
Length=313
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/187 (56%), Positives = 134/187 (72%), Gaps = 1/187 (0%)
Query 66 ICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEA 125
+ NLR+ L AG+D R +L + PPGYRL I D DL RFVA K +G+ A+A G F +A
Sbjct 1 MSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTYDLGRFVAEKTAGVHAAAAGRFEQA 59
Query 126 IRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKL 185
R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA VI +L
Sbjct 60 SRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 119
Query 186 ERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKI 245
E L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++P PT+RAL +I
Sbjct 120 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 179
Query 246 LRQLPMD 252
LRQ P+D
Sbjct 180 LRQQPLD 186
>gi|111026922|ref|YP_708900.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110825461|gb|ABH00742.1| probable transcriptional regulator [Rhodococcus jostii RHA1]
Length=377
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/257 (44%), Positives = 147/257 (58%), Gaps = 1/257 (0%)
Query 3 FNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTV 62
+VLG +EL + G LG K RAVLAMLL+ R +VVAADAL A W PP R ++
Sbjct 17 LHVLGAVELTIDGAPQSLGGTKPRAVLAMLLIRRGRVVAADALAAAAWNDDPPPDYRASL 76
Query 63 HTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYF 122
H + LR+ L A VD + +L + PGYRL + D DL RF A +G R + G F
Sbjct 77 HVIVSKLRKALGGADVDPKTVLATAAPGYRLSVAD-DDFDLARFRALSSTGGRLAEAGQF 135
Query 123 SEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVI 182
EA L AL W+GPVL DLR F F+ L E+ L + +A IACGRA+ VI
Sbjct 136 EEASAALSHALDEWKGPVLDDLRGHSFADAFAATLEEELLATASARTQAEIACGRAESVI 195
Query 183 PKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALY 242
L L HP RE LW QL+ Y+ QS A+DA RL++TLA+ELG++P+ ++ L
Sbjct 196 STLIDLTNEHPLREPLWAQLITALYLAGRQSDALDACRRLRTTLADELGIDPSGPLQDLE 255
Query 243 HKILRQLPMDDLVGRVT 259
+IL Q P+ G +T
Sbjct 256 KRILNQEPLTVTTGAMT 272
>gi|54027355|ref|YP_121597.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54018863|dbj|BAD60233.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=371
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/247 (38%), Positives = 143/247 (58%), Gaps = 1/247 (0%)
Query 5 VLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHT 64
VLGP+ L + G + +G PK RA+LA L ++R + VA+ AL +W + PP ++
Sbjct 7 VLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSYAASLQV 66
Query 65 YICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSE 124
++ N+R+ L ++GVD +L +E GYRL I + CD+ RF AA +G +A+ G
Sbjct 67 FVSNIRKALRNSGVDPAQVLRTESSGYRLEIPE-DACDIGRFEAACAAGAKAADLGDQVR 125
Query 125 AIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPK 184
A + AL W G + DL F F+ A+ E+ LL + +A IACGRA VI +
Sbjct 126 AAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEEERLLAASARIDAEIACGRASSVIGE 185
Query 185 LERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHK 244
L + HP RE LW QL+ Y++ Q+ A+DA R+++ LA+ELG++P P + L +
Sbjct 186 LVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALVELEQR 245
Query 245 ILRQLPM 251
+LRQ P+
Sbjct 246 VLRQEPL 252
>gi|296138442|ref|YP_003645685.1| SARP family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296026576|gb|ADG77346.1| transcriptional regulator, SARP family [Tsukamurella paurometabola
DSM 20162]
Length=379
Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/250 (37%), Positives = 140/250 (56%), Gaps = 3/250 (1%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ VLG + L++ G + K R+VLA+L+++R + V D+L + +W+ +PPA AR
Sbjct 4 LDIRVLGQVSLSVDGAPNEVSGVKPRSVLALLVMNRGRAVTVDSLSEQVWDGNPPASARA 63
Query 61 TVHTYICNLRRTLSDAGVDS--RNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASA 118
++ ++ LR+ L G S +LV+ YRL + + Q D+ RF AA+ G +A
Sbjct 64 SLQVFVSGLRKALRGPGAGSGLDALLVTSGSTYRLDL-EPDQSDVGRFDAARRRGAELAA 122
Query 119 KGYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRA 178
G F +A SAL +RG + DLR F F+ + E+ V + + +A IA GRA
Sbjct 123 AGRFDQASLMFASALAEFRGDAVADLRGLQFADNFAIGMAEERAAVQSAMYDAEIAAGRA 182
Query 179 DVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTI 238
VI L RLV+ HP +E LW QL+ YV Q+ A++A L+ TLA+ELG +P P +
Sbjct 183 GSVIGDLRRLVSEHPLQEPLWGQLITALYVTGRQADALEAARELRRTLADELGADPTPAL 242
Query 239 RALYHKILRQ 248
L K+LRQ
Sbjct 243 VELEGKVLRQ 252
>gi|159038648|ref|YP_001537901.1| SARP family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917483|gb|ABV98910.1| transcriptional regulator, SARP family [Salinispora arenicola
CNS-205]
Length=654
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/249 (40%), Positives = 138/249 (56%), Gaps = 9/249 (3%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F++LGP+EL + G LG K R +LA +L+ +QV+AAD L++A+W SPP+RAR
Sbjct 1 MEFHILGPVELRVDGQVTALGGAKPRTLLATMLVHHDQVIAADRLIEALWGASPPSRARS 60
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAK--ESGLRASA 118
+ TY+ +LRRT+S +G + + + PPGY L + LDR V + S +A++
Sbjct 61 ILQTYVSSLRRTISGSGGAT---VAAVPPGYSLRL---MSSTLDRNVFEQLLSSAKQATS 114
Query 119 KGYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRA 178
+G A L AL W GP LG + S + +R L E L A IA GR
Sbjct 115 RGRHEIAADILSRALAQWHGPALGGVESSLLDSEAAR-LEELRLTALEDRVNANIALGRL 173
Query 179 DVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTI 238
V +L LV HP+RE L QLM QS A+ Y + +L EELGVEP P +
Sbjct 174 AEVAAELTDLVRKHPFRERLHGQLMTVLCGLGRQSEALLVYRDARQSLVEELGVEPGPEL 233
Query 239 RALYHKILR 247
RAL+ +ILR
Sbjct 234 RALHTQILR 242
>gi|134097102|ref|YP_001102763.1| SARP family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291006958|ref|ZP_06564931.1| SARP family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133909725|emb|CAL99837.1| transcriptional regulator, SARP family [Saccharopolyspora erythraea
NRRL 2338]
Length=961
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/249 (39%), Positives = 135/249 (55%), Gaps = 9/249 (3%)
Query 2 QFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRT 61
+F VLGPLE+ G +P+G+ R +LA LLL NQ+V D L+ +W +PPA AR
Sbjct 16 EFRVLGPLEVLADGELIPIGSSSVRGILACLLLEPNQIVPMDRLIDTLWADAPPASARTI 75
Query 62 VHTYICNLRRTLSD-AGVDSRNI-LVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAK 119
+H YI LR+ ++ AG S N +V+ PPGY L Q D DR A + L A
Sbjct 76 IHGYISRLRKLFAEHAGDGSGNPEIVTRPPGYVL------QVDADRVDAHRARALVNHAY 129
Query 120 GYF-SEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRA 178
G +E R L AL+ WRGPVL D+ + +M L E LL + A + GR
Sbjct 130 GLEPAERSRVLTEALRLWRGPVLADISASPLHRMVGPNLDELRLLALEERVAADLDMGRH 189
Query 179 DVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTI 238
++ +L LV +P RE L QLML Y +++ A YH L+ L+ ELG++P P +
Sbjct 190 HHLVVELSTLVEQYPLRERLTGQLMLASYRAGHRAEAQARYHVLRRRLSGELGIDPGPEL 249
Query 239 RALYHKILR 247
R LY ++LR
Sbjct 250 RNLYERLLR 258
>gi|256379282|ref|YP_003102942.1| SARP family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255923585|gb|ACU39096.1| transcriptional regulator, SARP family [Actinosynnema mirum DSM
43827]
Length=989
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/249 (37%), Positives = 134/249 (54%), Gaps = 6/249 (2%)
Query 2 QFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRT 61
+ VLGPL + G + + PKQR VLA L+++ N+ V++ LV+A+W PARA T
Sbjct 13 EVGVLGPLLVRRGGVVVAVTAPKQRIVLASLVMAANRAVSSAELVRAVWGDRAPARAAHT 72
Query 62 VHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGY 121
+ Y+ LRR L + ++ + P GY L+ DL RF G A++
Sbjct 73 LAVYVMRLRRALGEP-----QLVHTTPSGY-LISLPHGAVDLHRFADHAAHGALAASAKD 126
Query 122 FSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVV 181
F A+ + AL WRGP L D+ S AL E++L V +L +A + G +
Sbjct 127 FGSAVEHYQRALDCWRGPALADVPSEALHADEVPALVEEQLRVTAELVDARLRLGHGAEL 186
Query 182 IPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRAL 241
+P L RL A HP RE W QLM+ + + Q+ A+DAY + + LA ELGV+P+ ++RA+
Sbjct 187 VPDLRRLTARHPLRERFWSQLMVALHRADRQADALDAYRQAGTALARELGVDPSESLRAV 246
Query 242 YHKILRQLP 250
+H IL P
Sbjct 247 HHSILTGDP 255
>gi|312198069|ref|YP_004018130.1| SARP family transcriptional regulator [Frankia sp. EuI1c]
gi|311229405|gb|ADP82260.1| transcriptional regulator, SARP family [Frankia sp. EuI1c]
Length=282
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/264 (36%), Positives = 135/264 (52%), Gaps = 5/264 (1%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+++ +LGP+ L + PK +L +LL+ NQVV+ L+ IW++ PP RA
Sbjct 22 LKYQILGPIRLVDEDKVRSISAPKVETLLTVLLIRNNQVVSTSQLISEIWDERPPRRATA 81
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
VH YI NLR+ L D+G +V+ PPGY LL D +Q DL F G ++ ++
Sbjct 82 AVHVYISNLRKLLGDSGGGPAGPIVTRPPGY-LLRLDSEQLDLTVFQRLVRQGRQSMSES 140
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQM-FSRALTEDELLVHTKLAEAAIACGRAD 179
F +A R D AL WRGP+ L S V FS + E L EA + GR
Sbjct 141 RFEDAARTFDEALALWRGPI--PLSSDGPVMTAFSVGVEEARLECVELRVEANLRLGRHR 198
Query 180 VVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIR 239
I L LV HP E+ + QLM Y++ ++ A++ YH+L+ L ELG+EP +R
Sbjct 199 AAISDLYGLVNEHPLHEAFYGQLMRALYLSRRRADALEVYHQLREVLRRELGLEPGAALR 258
Query 240 ALYHKILRQLPMD-DLVGRVTRGR 262
L +L +D + R+T GR
Sbjct 259 ELQRAVLTDTVVDGEQPARLTSGR 282
>gi|238064278|ref|ZP_04608987.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
gi|237886089|gb|EEP74917.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
Length=993
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/248 (37%), Positives = 130/248 (53%), Gaps = 7/248 (2%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
V+F VLG LE + G+ +P+ +P+QR VLA LL++ N VV D L+ A+W+ SPP AR
Sbjct 4 VEFRVLGTLEAVVDGSPVPITSPRQRIVLANLLMAANHVVTVDKLIGAVWDASPPPSARG 63
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
+ I LRR L S I+ + P GY + + RQQ D F A G A+AKG
Sbjct 64 QIQICISALRRALG-----SPEIIDTNPLGYSIRVA-RQQLDYLVFDDALAQGRSAAAKG 117
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
EA+ +L+ A+ W GP LG + V++ S L E ++ AE + G
Sbjct 118 RLDEALTHLNRAIDIWSGPALGGVPG-RAVEVVSHRLEERRIMALEDRAEIRLGLGGHRE 176
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
++ +L L +P RE LW ML Y + Q+ A+ Y ++ L ELG+EP+ +R
Sbjct 177 LVEELVALTTEYPLRERLWGFRMLALYRSGRQAEALATYRTARTKLVGELGIEPSQYLRK 236
Query 241 LYHKILRQ 248
L IL Q
Sbjct 237 LERAILSQ 244
>gi|258652403|ref|YP_003201559.1| SARP family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258555628|gb|ACV78570.1| transcriptional regulator, SARP family [Nakamurella multipartita
DSM 44233]
Length=385
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/251 (38%), Positives = 140/251 (56%), Gaps = 7/251 (2%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ +LGPLEL L G +PL K +AVLA LL+SRN+VV AD+L AIW+ PA
Sbjct 18 LDVRLLGPLELRLDGRPIPLPGGKPKAVLAGLLVSRNRVVPADSLADAIWDGEVPANFLA 77
Query 61 TVHTYICNLRRTL---SDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRAS 117
T+ ++ LRR L SD G+ + + ++ PGYR+++ D D+ RF +G
Sbjct 78 TLQVHVSALRRALRPVSDPGLLT---VTTQSPGYRVVV-DDALVDVGRFGRWARAGSDLL 133
Query 118 AKGYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGR 177
++EA L +AL W G L DL+ F F+ A+ E+ L+ EA +ACG
Sbjct 134 TARRYAEAADRLRAALAEWSGSALADLQGLRFADDFAAAVEEERLVALQARIEADLACGM 193
Query 178 ADVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPT 237
V+ +L L +P RE W QL+ Y + Q+ A+DA R+++ L +ELG++P+P
Sbjct 194 ESAVVGELVTLTGQYPLREPFWIQLITALYRSGRQADALDAARRIRTLLDDELGIDPSPA 253
Query 238 IRALYHKILRQ 248
+R L ++LRQ
Sbjct 254 LRDLERQVLRQ 264
>gi|300788234|ref|YP_003768525.1| SARP family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299797748|gb|ADJ48123.1| SARP family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340529819|gb|AEK45024.1| SARP family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=998
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/246 (36%), Positives = 129/246 (53%), Gaps = 6/246 (2%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
++F +LG + + + G ++PLG PK R +LA+LL++ +VV D L+ A+W ++PP AR
Sbjct 1 MEFRLLGSMAVLVAGEQVPLGGPKPRTLLAVLLVNAGRVVPVDTLITALWGENPPNSARS 60
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
VHTY+ LRR L D + L + PGY L + + DL RF +G RA A G
Sbjct 61 VVHTYVSALRRMLG----DRDDALRRQAPGYLLDVAP-ESIDLVRFERVVSAGCRALAAG 115
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
A L AL W GP LG + + L E L+ EA GRA
Sbjct 116 DAQRASATLTEALGLWSGPPLGGAEG-EWAETERTKLAEARLVAVEARLEADFRLGRAGA 174
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
+ +L LVA HP RE L +L+L + Q+ A+ +H+ + L +ELGVEP P ++A
Sbjct 175 LTGELTELVAEHPLREPLRAKLILALHQAGRQADALATFHQARRLLDDELGVEPGPQLQA 234
Query 241 LYHKIL 246
+ +L
Sbjct 235 AFQTVL 240
>gi|256378710|ref|YP_003102370.1| SARP family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255923013|gb|ACU38524.1| transcriptional regulator, SARP family [Actinosynnema mirum DSM
43827]
Length=833
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/245 (38%), Positives = 124/245 (51%), Gaps = 2/245 (0%)
Query 3 FNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTV 62
F +LGPLE+ + LG +QRA L LLL N+VVA L+ A+W PA +R+ +
Sbjct 3 FRMLGPLEVLDGDRAVGLGGTRQRATLGFLLLHLNRVVATSQLLGALWTTEAPASSRKIL 62
Query 63 HTYICNLRRTLSDAGVDSRN-ILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGY 121
+ LR LS +G + LV++ PGY L + D + DL F E G A
Sbjct 63 QNAVWGLRGALSSSGRSPESATLVTQTPGYMLSV-DPSRVDLHSFHQLAEEGQTKLAARE 121
Query 122 FSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVV 181
F +A R L+ AL WRGP L DL L L V EA ++CGR V
Sbjct 122 FEDASRVLNRALGLWRGPALADLVETGLAWSELSVLQNLRLDVLEDYFEAELSCGRHHAV 181
Query 182 IPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRAL 241
+ +LER V +P RE QLML Y Q+ A+ + R++ L EELG+EP +++L
Sbjct 182 LGELERTVEANPVRERACGQLMLALYRCGRQADALTVFSRVRGALVEELGLEPCRELKSL 241
Query 242 YHKIL 246
H IL
Sbjct 242 QHAIL 246
>gi|330468374|ref|YP_004406117.1| SARP family transcriptional regulator [Verrucosispora maris AB-18-032]
gi|328811345|gb|AEB45517.1| SARP family transcriptional regulator [Verrucosispora maris AB-18-032]
Length=941
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/248 (37%), Positives = 126/248 (51%), Gaps = 2/248 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ F++LGPL L G + LG+ KQR VLA LL N+ V+ + LV A+W+ PPA A
Sbjct 3 IHFDLLGPLSLVRDGRPVDLGSVKQRLVLACLLFRPNEAVSKERLVTALWDDQPPASANA 62
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
+ TY+ LR+ L D D I+ + G LL + + DLDRF AA G A G
Sbjct 63 NIRTYVRGLRQALHDEADDQPRIVTTH--GGYLLRVEPDERDLDRFDAATARGREALTSG 120
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
A L +AL WRG L +L + + L E LL AEA +A G
Sbjct 121 DAERAEAELVAALGLWRGRALAELPLPPQLSRWVEQLMERRLLAEEDHAEAKLALGAPAE 180
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
VIP+L L+ HP R+ W LM Y + + A+ A+ +++ LAEE G++P P +
Sbjct 181 VIPRLRALLDRHPLRQRAWVHLMSALYASGDVAGALAAFRQVRRVLAEETGMDPGPELTR 240
Query 241 LYHKILRQ 248
L+ IL
Sbjct 241 LHDDILHH 248
>gi|271962756|ref|YP_003336952.1| SARP family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270505931|gb|ACZ84209.1| transcriptional regulator, SARP family [Streptosporangium roseum
DSM 43021]
Length=378
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/249 (35%), Positives = 126/249 (51%), Gaps = 3/249 (1%)
Query 2 QFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRT 61
+F VLGPL G + +G KQR +LA LL+ N+VV + L +W ++PP AR
Sbjct 16 EFGVLGPLRALRGGDPVAIGAAKQRVLLASLLIDANRVVPVETLTARLWGEAPPCGARNA 75
Query 62 VHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGY 121
+ Y+ LRR L AG + +++ P GY + + D + DL RF A A A G
Sbjct 76 LQNYVMRLRRVLGGAG--GSDPVLTRPQGYLIGVAD-EAVDLHRFDALVRRARTAVAAGG 132
Query 122 FSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADVV 181
+A L AL WRG L D+ S + + + AL E L +A +A GR V
Sbjct 133 AEQASALLREALGLWRGQPLSDVPSELLQREVAPALAERRLGAVELRIQADLALGRHGDV 192
Query 182 IPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRAL 241
+P+L L A HP RE W Q ML Y + + A+ Y + L+EELG++P +R L
Sbjct 193 LPELRELTAAHPLRERFWAQRMLALYRSGRRGEALQCYRTVGELLSEELGIDPGAELREL 252
Query 242 YHKILRQLP 250
+ ++L P
Sbjct 253 HRRLLDADP 261
>gi|8100065|dbj|BAA96296.1| Orf2 [Streptomyces virginiae]
Length=271
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/261 (34%), Positives = 134/261 (52%), Gaps = 7/261 (2%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+ +VLG L + G + L PK R + A+L + ++ V L++ +WE PP AR
Sbjct 1 MDIDVLGSLTVREGGAPVALTAPKPRQLHAVLAMHADRTVPVPLLIEELWEGRPPRSARN 60
Query 61 TVHTYICNLRRTLSDA------GVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGL 114
T+ TYI LR + A D++ +LV+EP GYRL D F SG
Sbjct 61 TLQTYILQLRELIGQALRLAGDAHDAKRVLVTEPDGYRLDTRG-GAIDTHEFERRAASGY 119
Query 115 RASAKGYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIA 174
RA A+ F+ A R L AL W+GP +R+ ++M R L E L + EA +
Sbjct 120 RAMAQEDFAAASRRLHDALALWQGPAFAGIRTGALLEMEIRRLEEARLCALDQRIEADLR 179
Query 175 CGRADVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEP 234
GR ++ +L L + H ESL +QLM+ + + ++ A+ AY RL++TL +LG+EP
Sbjct 180 LGRHRELVGELTVLASRHRMHESLHRQLMIALHRSGRRAEALAAYQRLRTTLVRDLGLEP 239
Query 235 APTIRALYHKILRQLPMDDLV 255
+P +R L H +L P + V
Sbjct 240 SPALRRLQHSMLASGPEREAV 260
>gi|238632104|gb|ACR50789.1| putative pathway specific activator [Streptomyces longisporoflavus]
Length=256
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/246 (34%), Positives = 129/246 (53%), Gaps = 2/246 (0%)
Query 1 VQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
+++ +LGPL + + K + +L +LL+ QVV+ D + IW +PP RA
Sbjct 1 MKYEILGPLRVTDENGSYFINARKMQVLLTLLLIRAKQVVSIDEAITEIWGTNPPRRATA 60
Query 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
+H YI LR+ L+ IL ++PPGY L +GD + D+ +F A G +
Sbjct 61 GIHVYISQLRKFLTRPDRAESPIL-TQPPGYFLNLGD-DEIDVHQFQALMHQGRESMKAS 118
Query 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
+++A +SAL WRGPVLG+L ++ F+ E L L EA ++ GR
Sbjct 119 QYTDASASFESALALWRGPVLGELHGGPALEGFTAWTHETRLECTELLVEAQLSLGRHLE 178
Query 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
++ +L L A HP RE+ ++QLML +E Q+ A+ Y ++ L EELG+EP +R
Sbjct 179 LVGRLYSLTAEHPLREAFYRQLMLALSRSERQADALRVYQHARNILNEELGLEPCRALRE 238
Query 241 LYHKIL 246
+ IL
Sbjct 239 MQRAIL 244
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 470845709104
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40