BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3128c Length=336 Score E Sequences producing significant alignments: (Bits) Value gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacter... 688 0.0 gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycob... 544 9e-153 gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Na... 505 3e-141 gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Na... 503 1e-140 gi|289555402|ref|ZP_06444612.1| LOW QUALITY PROTEIN: conserved h... 407 1e-111 gi|289755248|ref|ZP_06514626.1| transposase [Mycobacterium tuber... 407 1e-111 gi|289746938|ref|ZP_06506316.1| transposase [Mycobacterium tuber... 407 2e-111 gi|289444692|ref|ZP_06434436.1| LOW QUALITY PROTEIN: conserved h... 406 3e-111 gi|148824322|ref|YP_001289076.1| hypothetical protein TBFG_13149... 405 4e-111 gi|121639011|ref|YP_979235.1| hypothetical protein BCG_3151c [My... 404 1e-110 gi|31794304|ref|NP_856797.1| hypothetical protein Mb3152c [Mycob... 400 1e-109 gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brev... 376 3e-102 gi|167970204|ref|ZP_02552481.1| hypothetical protein MtubH3_2013... 370 2e-100 gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycoba... 345 7e-93 gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobilu... 320 2e-85 gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisi... 318 1e-84 gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobilu... 306 4e-81 gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brev... 301 7e-80 gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491... 298 7e-79 gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Myc... 293 3e-77 gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 ... 293 3e-77 gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166... 293 4e-77 gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycoba... 292 4e-77 gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 ... 292 4e-77 gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycoba... 291 1e-76 gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevi... 283 4e-74 gi|260905080|ref|ZP_05913402.1| hypothetical protein BlinB_07094... 273 2e-71 gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brev... 253 2e-65 gi|260906447|ref|ZP_05914769.1| Integrase catalytic region [Brev... 244 1e-62 gi|31794303|ref|NP_856796.1| hypothetical protein Mb3151c [Mycob... 233 5e-59 gi|338753668|gb|AEI96657.1| integrase core domain-containing pro... 231 1e-58 gi|338755106|gb|AEI98095.1| integrase core domain-containing pro... 231 1e-58 gi|296454294|ref|YP_003661437.1| integrase core domain-containin... 231 2e-58 gi|296454382|ref|YP_003661525.1| integrase core domain-containin... 229 6e-58 gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacter... 227 2e-57 gi|289759256|ref|ZP_06518634.1| transposase [Mycobacterium tuber... 224 2e-56 gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brev... 213 3e-53 gi|325963578|ref|YP_004241484.1| integrase family protein [Arthr... 213 5e-53 gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [... 210 3e-52 gi|254552217|ref|ZP_05142664.1| hypothetical protein Mtube_17478... 200 3e-49 gi|326773220|ref|ZP_08232503.1| integrase domain protein [Actino... 196 3e-48 gi|289759257|ref|ZP_06518635.1| LOW QUALITY PROTEIN: conserved h... 191 2e-46 gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desul... 188 8e-46 gi|339295962|gb|AEJ48073.1| hypothetical protein CCDC5079_2883 [... 188 9e-46 gi|339627742|ref|YP_004719385.1| integrase catalytic subunit [Su... 184 1e-44 gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Su... 182 9e-44 gi|42528088|ref|NP_973186.1| integrase domain-containing protein... 179 6e-43 gi|298248996|ref|ZP_06972800.1| Integrase catalytic region [Kted... 174 2e-41 gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [... 173 3e-41 gi|320536591|ref|ZP_08036613.1| integrase core domain protein [T... 172 8e-41 >gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacterium tuberculosis (strain H37RV) Length=337 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/337 (99%), Positives = 336/337 (99%), Gaps = 1/337 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 +WSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 1 MWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 Query 181 IYFTRFRPYKKNH-ATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 IYFTRFRPYKKNH ATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT Sbjct 181 IYFTRFRPYKKNHXATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 240 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD Sbjct 241 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 300 Query 300 LQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG 336 LQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG Sbjct 301 LQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG 337 >gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycobacterium celatum] gi|13810877|gb|AAK40065.1| Rv3128c-like protein [Mycobacterium celatum] Length=423 Score = 544 bits (1401), Expect = 9e-153, Method: Compositional matrix adjust. Identities = 260/336 (78%), Positives = 292/336 (87%), Gaps = 1/336 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW+ASGGQCG+YLAASM LQLD LERHG L G+DRY P+VR ELLAMS+A+IDRYL+ A Sbjct 87 VWAASGGQCGRYLAASMGLQLDALERHGELVDGQDRYSPQVRAELLAMSSATIDRYLRPA 146 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KA+DQ+ G STTK SPLLR++IK+R+ DEVEA PGFFEGDTVAHCGPTLKGEFA TLNL Sbjct 147 KARDQVKGQSTTKGSPLLRSAIKIRKGTDEVEASPGFFEGDTVAHCGPTLKGEFARTLNL 206 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TD+HIGWVFTR+VRNNA THIL LK+ + EIP+ +TGLDFDNGT FLNK VI WA Sbjct 207 TDMHIGWVFTRSVRNNAHTHILGALKSGIHEIPYEVTGLDFDNGTEFLNKAVIKWAAQME 266 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 I+FTR RPYKKN ATIESKNNHLVRKYAFYYRYDT EERAVLNR+WKLVNDRLNYLTPT Sbjct 267 IFFTRSRPYKKNDQATIESKNNHLVRKYAFYYRYDTDEERAVLNRLWKLVNDRLNYLTPT 326 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 IKPIGY S DG+RRRLYD P TPLDR LAA VLS AQ+++L+ YRD+LNPA I R+IAD Sbjct 327 IKPIGYGSGRDGQRRRLYDQPMTPLDRLLAAGVLSPAQESELLAYRDTLNPAAIARQIAD 386 Query 300 LQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKA 335 LQNRLL+LAKEKTEQLYLA+IPTALPD+HKG+ IKA Sbjct 387 LQNRLLLLAKEKTEQLYLASIPTALPDVHKGVRIKA 422 >gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233] gi|258555333|gb|ACV78275.1| Integrase catalytic region [Nakamurella multipartita DSM 44233] Length=418 Score = 505 bits (1301), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 244/337 (73%), Positives = 274/337 (82%), Gaps = 1/337 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW+ASGGQCGKYLAASM QLDGLERHG L G RY VR ELLAMS A+IDRYL+TA Sbjct 82 VWAASGGQCGKYLAASMDTQLDGLERHGELVDGECRYSASVRAELLAMSPATIDRYLRTA 141 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KA DQ+ GVSTTKPSPLLR+SIK+R+AGDEVEAEPGFFEGDTVAHCGPTL+GEFA ++NL Sbjct 142 KATDQVRGVSTTKPSPLLRSSIKIRKAGDEVEAEPGFFEGDTVAHCGPTLRGEFARSVNL 201 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 T VH GWVFTR+ RNNA +ILA L+A V EIP +TGLDFDNG FLN+ VI WA + Sbjct 202 TCVHTGWVFTRSTRNNAHANILAALQAGVQEIPFAVTGLDFDNGGEFLNRAVIKWAAERD 261 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 IYFTR RPYKKN ATIESKNNHLVR+YAFYYRYDT EER LNR+WKLVNDRLNYLTPT Sbjct 262 IYFTRSRPYKKNDQATIESKNNHLVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPT 321 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 IKP+G+ + GRR+RLYD PQTPL R LAA LS AQ +L YRD LNPA + R+IAD Sbjct 322 IKPVGWGENKAGRRKRLYDKPQTPLSRLLAAGTLSPAQAHELTAYRDGLNPAALAREIAD 381 Query 300 LQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG 336 +Q LL LAK KTEQLYLA +P ALPD+ KG+ I+AG Sbjct 382 IQAVLLGLAKNKTEQLYLATVPKALPDVRKGVRIRAG 418 >gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233] gi|258554360|gb|ACV77302.1| Integrase catalytic region [Nakamurella multipartita DSM 44233] Length=418 Score = 503 bits (1296), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 243/337 (73%), Positives = 273/337 (82%), Gaps = 1/337 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW+ASGGQCGKYLAASM QLDGLERHG L G RY VR ELLAMS A+IDRYL+TA Sbjct 82 VWAASGGQCGKYLAASMDTQLDGLERHGELVDGEGRYSASVRAELLAMSPATIDRYLRTA 141 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KA DQ+ GVSTTKPSPLLR+SIK+R+AGDEVEAEPGFFEGDTVAHCGPTL+GEFA ++NL Sbjct 142 KATDQVRGVSTTKPSPLLRSSIKIRKAGDEVEAEPGFFEGDTVAHCGPTLRGEFARSVNL 201 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 T VH GWVFTR+ RNNA +ILA L+A V EIP +TGLDFDNG FLN+ VI WA + Sbjct 202 TCVHTGWVFTRSTRNNAHANILAALQAGVQEIPFAVTGLDFDNGGEFLNRAVIKWAAEQD 261 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 IYFTR RPYKKN ATIESKNNHLVR+YAFYYRYDT EER LNR+WKLVNDRLNYLTPT Sbjct 262 IYFTRSRPYKKNDQATIESKNNHLVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPT 321 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 IKP+G+ + GRR+RLYD PQTPL R LAA LS AQ +L YRD LNPA + R+IA Sbjct 322 IKPVGWGENKAGRRKRLYDKPQTPLSRLLAAGTLSPAQAHELTAYRDGLNPAALAREIAG 381 Query 300 LQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG 336 +Q LL LAK KTEQLYLA +P ALPD+ KG+ I+AG Sbjct 382 IQAVLLGLAKNKTEQLYLATVPKALPDVRKGVRIRAG 418 >gi|289555402|ref|ZP_06444612.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289440034|gb|EFD22527.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] Length=238 Score = 407 bits (1046), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 46 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 105 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 106 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 165 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 166 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 225 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 226 IYFTRFRPYKKNH 238 >gi|289755248|ref|ZP_06514626.1| transposase [Mycobacterium tuberculosis EAS054] gi|289695835|gb|EFD63264.1| transposase [Mycobacterium tuberculosis EAS054] Length=236 Score = 407 bits (1046), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 44 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 103 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 104 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 163 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 164 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 223 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 224 IYFTRFRPYKKNH 236 >gi|289746938|ref|ZP_06506316.1| transposase [Mycobacterium tuberculosis 02_1987] gi|289763311|ref|ZP_06522689.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289687466|gb|EFD54954.1| transposase [Mycobacterium tuberculosis 02_1987] gi|289710817|gb|EFD74833.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=220 Score = 407 bits (1045), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 28 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 87 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 88 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 147 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 148 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 207 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 208 IYFTRFRPYKKNH 220 >gi|289444692|ref|ZP_06434436.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289417611|gb|EFD14851.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T46] Length=221 Score = 406 bits (1043), Expect = 3e-111, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 29 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 88 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 89 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 148 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 149 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 208 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 209 IYFTRFRPYKKNH 221 >gi|148824322|ref|YP_001289076.1| hypothetical protein TBFG_13149 [Mycobacterium tuberculosis F11] gi|253800161|ref|YP_003033162.1| hypothetical protein TBMG_03172 [Mycobacterium tuberculosis KZN 1435] gi|298526603|ref|ZP_07014012.1| transposase [Mycobacterium tuberculosis 94_M4241A] 9 more sequence titles Length=197 Score = 405 bits (1042), Expect = 4e-111, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 5 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 64 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 65 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 124 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 125 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 184 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 185 IYFTRFRPYKKNH 197 >gi|121639011|ref|YP_979235.1| hypothetical protein BCG_3151c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662982|ref|YP_001284505.1| hypothetical protein MRA_3160 [Mycobacterium tuberculosis H37Ra] gi|224991503|ref|YP_002646192.1| hypothetical protein JTY_3146 [Mycobacterium bovis BCG str. Tokyo 172] 10 more sequence titles Length=193 Score = 404 bits (1038), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 192/193 (99%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 +WSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 1 MWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG Sbjct 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 181 IYFTRFRPYKKNH 193 >gi|31794304|ref|NP_856797.1| hypothetical protein Mb3152c [Mycobacterium bovis AF2122/97] gi|31619900|emb|CAD95244.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] Length=193 Score = 400 bits (1029), Expect = 1e-109, Method: Compositional matrix adjust. Identities = 191/193 (99%), Positives = 192/193 (99%), Gaps = 0/193 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 +WSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 1 MWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL Sbjct 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGT FLNKPVISWAGDNG Sbjct 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTGFLNKPVISWAGDNG 180 Query 181 IYFTRFRPYKKNH 193 IYFTRFRPYKKNH Sbjct 181 IYFTRFRPYKKNH 193 >gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brevibacterium linens BL2] Length=430 Score = 376 bits (966), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 186/336 (56%), Positives = 235/336 (70%), Gaps = 3/336 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWS +GG CGKYLA +MV L+ LE H L G+ RY VR+EL++MS A+IDRYL A Sbjct 91 VWSVAGGICGKYLAQAMVDLLNSLEAHNHLVPGQGRYSTNVRDELVSMSPATIDRYLAPA 150 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 +A+D + G S TKP LLRNSI+VR+AGDEVEAEPGFFE DTVAHCGPTLKGEF ++N Sbjct 151 RARDTLRGKSATKPGTLLRNSIQVRKAGDEVEAEPGFFEVDTVAHCGPTLKGEFIRSVNY 210 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TD+H GWV+TR V+NNA HI+A V +P+ +TGLDFDNG+ F+N +I WA Sbjct 211 TDMHTGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGLDFDNGSEFINHDLIDWAAQRK 270 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 I+FTR RPY KN ATIESKNNHLVR+Y FYYRYDT E ++ +W LVNDRLNY TPT Sbjct 271 IFFTRGRPYTKNDQATIESKNNHLVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPT 330 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 KP GY++ + GRR+R+YD P+TP R L + +L+ Q A+L Y+ L+P I +I Sbjct 331 KKPTGYSTDSVGRRKRVYDTPRTPFVRLLDSGILNRKQVAELRAYKAGLDPVHIAAEIDR 390 Query 300 LQNRLLILAKEKTEQLYLA-NIPTALPDIHKGILIK 334 +Q RL+ LA KT ++ ALPD GI ++ Sbjct 391 IQQRLIKLAAGKTARMKREIEAKQALPD-SSGIRVR 425 >gi|167970204|ref|ZP_02552481.1| hypothetical protein MtubH3_20138 [Mycobacterium tuberculosis H37Ra] gi|297635769|ref|ZP_06953549.1| hypothetical protein MtubK4_16677 [Mycobacterium tuberculosis KZN 4207] gi|297732766|ref|ZP_06961884.1| hypothetical protein MtubKR_16832 [Mycobacterium tuberculosis KZN R506] gi|306804921|ref|ZP_07441589.1| hypothetical protein TMHG_02340 [Mycobacterium tuberculosis SUMu008] gi|313660099|ref|ZP_07816979.1| hypothetical protein MtubKV_16837 [Mycobacterium tuberculosis KZN V2475] gi|308348524|gb|EFP37375.1| hypothetical protein TMHG_02340 [Mycobacterium tuberculosis SUMu008] Length=177 Score = 370 bits (950), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 177/177 (100%), Positives = 177/177 (100%), Gaps = 0/177 (0%) Query 17 MVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSP 76 MVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSP Sbjct 1 MVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSP 60 Query 77 LLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNN 136 LLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNN Sbjct 61 LLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNN 120 Query 137 ARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKNH 193 ARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKNH Sbjct 121 ARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKNH 177 >gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895970|gb|EFG75660.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=210 Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 164/209 (79%), Positives = 179/209 (86%), Gaps = 1/209 (0%) Query 35 DRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAE 94 DRY P+VR ELLAMS+A+IDRYL+ KA+DQI G STTK SPLLR+SIK+R+A DEVE Sbjct 2 DRYSPQVRAELLAMSSATIDRYLRAVKARDQIKGKSTTKASPLLRSSIKIRKATDEVEGS 61 Query 95 PGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPH 154 PGFFEGDTVAHCGPTLKGEFA T+NLTD+HIGWVFTRT RNNA THIL LKA V EIP+ Sbjct 62 PGFFEGDTVAHCGPTLKGEFARTVNLTDMHIGWVFTRTERNNAHTHILGALKAGVHEIPY 121 Query 155 GITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRY 213 +TGLDFDNGT FLNK VI WA I+FTR RPYKKN ATIESKNNHLVRKY FYYRY Sbjct 122 EVTGLDFDNGTEFLNKAVIKWAAQMEIFFTRSRPYKKNDQATIESKNNHLVRKYGFYYRY 181 Query 214 DTAEERAVLNRMWKLVNDRLNYLTPTIKP 242 DT EERAVLNR+W+LVNDRLNYLTPTIKP Sbjct 182 DTDEERAVLNRLWRLVNDRLNYLTPTIKP 210 >gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492842|gb|EFU82446.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length=310 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 154/287 (54%), Positives = 202/287 (71%), Gaps = 1/287 (0%) Query 32 FGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEV 91 GR Y ++R+ELL MSA++IDRYLK A+ ++ G+S+TKP LLRNSIK+R+AGDE+ Sbjct 2 IGRAGYSQKIRDELLGMSASTIDRYLKEARQSLELRGISSTKPGALLRNSIKIRKAGDEI 61 Query 92 EAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTE 151 EPGFFE TVAHCGP+LKGE TL LTDV+ GW+ ++NNAR H+L L +++ Sbjct 62 ADEPGFFEMYTVAHCGPSLKGELVRTLTLTDVNTGWIHLEALQNNARVHMLKALDSAIET 121 Query 152 IPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFY 210 IP+ + GLD DNG+ F+N+ VI+WA ++FTR RPYKKN A +ESKNNH+VRKY F+ Sbjct 122 IPYQVQGLDCDNGSEFINREVINWASSLDVFFTRSRPYKKNDQAHVESKNNHVVRKYGFH 181 Query 211 YRYDTAEERAVLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAA 270 YRYDT +E VL ++WK V R+N TPT KPIG+ + GRR+R+YD P TPLDR LA+ Sbjct 182 YRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIGWNQDSVGRRKRVYDTPATPLDRLLAS 241 Query 271 RVLSAAQQADLITYRDSLNPAQIGRKIADLQNRLLILAKEKTEQLYL 317 +LS Q +L RDS NPA++ R I Q L LA+ TE L + Sbjct 242 GILSRTQIKELQQLRDSTNPAELTRDILRYQAILTDLARTPTEVLTI 288 >gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisii ATCC 43063] gi|298236713|gb|ADI67845.1| transposase [Mobiluncus curtisii ATCC 43063] Length=310 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 153/288 (54%), Positives = 202/288 (71%), Gaps = 1/288 (0%) Query 32 FGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEV 91 GR Y ++R+ELL MSA++IDRYLK A+ ++ G+S+TKP LLRNSIK+R+AGDE+ Sbjct 2 IGRAGYSQKIRDELLGMSASTIDRYLKEARQSLELRGISSTKPGALLRNSIKIRKAGDEI 61 Query 92 EAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTE 151 EPGFFE TVAHCGP+LKGE TL LTDV+ GW+ ++NNAR H+L L +++ Sbjct 62 ADEPGFFERYTVAHCGPSLKGELVRTLTLTDVNTGWIHLEALQNNARVHMLKALDSAIET 121 Query 152 IPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFY 210 IP+ + LD DNG+ F+N+ VI+WA ++FTR RPYKKN A +ESKNNH+VRKY F+ Sbjct 122 IPYQVQDLDCDNGSEFINREVINWASSLDVFFTRSRPYKKNDQAHVESKNNHVVRKYGFH 181 Query 211 YRYDTAEERAVLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAA 270 YRYDT +E VL ++WK V R+N TPT KPIG+ + GRR+R+YD P TPLDR LA+ Sbjct 182 YRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIGWNQDSVGRRKRVYDTPATPLDRLLAS 241 Query 271 RVLSAAQQADLITYRDSLNPAQIGRKIADLQNRLLILAKEKTEQLYLA 318 +LS Q +L RDS NPA++ R I Q L LA+ TE L ++ Sbjct 242 GILSRTQIKELQQLRDSTNPAELTRDILRYQAILTDLARTPTEVLTIS 289 >gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327192|gb|EFL94428.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length=293 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 147/271 (55%), Positives = 192/271 (71%), Gaps = 1/271 (0%) Query 48 MSAASIDRYLKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCG 107 MSA++IDRYLK A+ ++ G+S+TKP LLRNSIK+R+AGDE+ EPGFFE TVAHCG Sbjct 1 MSASTIDRYLKEARQSLELRGISSTKPGALLRNSIKIRKAGDEIADEPGFFERYTVAHCG 60 Query 108 PTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVF 167 P+LKGE TL LTDV+ GW+ ++NNAR H+L L +++ IP+ + GLD DNG+ F Sbjct 61 PSLKGELVRTLTLTDVNTGWIHIEALQNNARVHMLKALDSAIETIPYQVQGLDCDNGSEF 120 Query 168 LNKPVISWAGDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMW 226 +N+ VI+WA ++FTR RPYKKN A +ESKNNH+VRKY F+YRYDT +E VL ++W Sbjct 121 INREVINWASSLDVFFTRSRPYKKNDQAHVESKNNHVVRKYGFHYRYDTPKELKVLRKLW 180 Query 227 KLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRD 286 K V R+N TPT KPIG+ + GRR+R+YD P TPLDR LA+ +LS Q +L RD Sbjct 181 KTVCLRMNLFTPTRKPIGWNQDSVGRRKRVYDTPATPLDRLLASGILSRTQIKELQQLRD 240 Query 287 SLNPAQIGRKIADLQNRLLILAKEKTEQLYL 317 S NPA++ R I Q L LA+ TE L + Sbjct 241 STNPAELTRDILRYQAILTDLARTPTEVLTI 271 >gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brevibacterium linens BL2] Length=323 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 142/233 (61%), Positives = 173/233 (75%), Gaps = 1/233 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWS +GG CGKYLA +MV L+ LE H L G+ RY VR+EL++MS A+IDRYL A Sbjct 91 VWSVAGGICGKYLAQAMVDLLNSLEAHNHLVPGQGRYSTNVRDELVSMSPATIDRYLAPA 150 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 +A+D + G S TKP LLRNSI+VR+AGDEVEAEPGFFE DTVAHCGPTLKGEF ++N Sbjct 151 RARDTLRGKSATKPGTLLRNSIQVRKAGDEVEAEPGFFEVDTVAHCGPTLKGEFIRSVNY 210 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TD+H GWV+TR V+NNA HI+A V +P+ +TGLDFDNG+ F+N +I WA Sbjct 211 TDMHTGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGLDFDNGSEFINHDLIDWAAQRK 270 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDR 232 I+FTR RPY KN ATIESKNNHLVR+Y FYYRYDT E ++ +W LVND+ Sbjct 271 IFFTRGRPYTKNDQATIESKNNHLVRRYGFYYRYDTTTELGLMTTLWALVNDQ 323 >gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491 [Mycobacterium canettii CIPT 140010059] gi|340006010|emb|CCC45180.1| putative uncharacterized protein bcg_2825 [Mycobacterium canettii CIPT 140010059] Length=384 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 204/320 (64%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L L G L+ + E EL AMSAA++DRYLK Sbjct 49 VWALMGMPCGKYLVVMLDLWLPLLAAAGDLD---KPFATEASVAELKAMSAATVDRYLKP 105 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI +R +E PG E DTVAHCGPTL GEFA TL Sbjct 106 ARDRMRIKGISTTKPSPLLRNSISIRTCAEEAPKAPGVIEADTVAHCGPTLIGEFARTLT 165 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ IGW ++RNNA I+ G++ P + D D G F+N V +W Sbjct 166 MTDLVIGWTENASIRNNASKWIVEGIEELQQRFPFPMVTFDSDCGGEFINHDVAAWLQAR 225 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RP++KN A +ESKNNH+VRK+AFY+RYDT +ER +LNR+W+LV+ RLN+ TP Sbjct 226 DIEQTRSRPHQKNDQAHVESKNNHVVRKHAFYWRYDTEQERELLNRLWRLVSLRLNFFTP 285 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY ++A+GRRRR+YD P TP R A+ V+ A + + D +NPA + R+I Sbjct 286 TKKPVGYTTTANGRRRRIYDKPATPWQRLKASNVVDAQHISAVTARVDGINPADLTRQIN 345 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 346 AIQTQLLDLAKTKTEALAAA 365 >gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991179|ref|YP_002645868.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo 172] gi|121494335|emb|CAL72813.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774294|dbj|BAH27100.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602725|emb|CCC65401.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=384 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 198/320 (62%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L + G L+ + E EL AMSAA++DRYLK Sbjct 49 VWALMGMPCGKYLVVMLELWLPLVAAAGDLD---KPFATEAAVAELKAMSAATVDRYLKP 105 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL Sbjct 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ GW ++RNNA IL G+K P +T D D G F+N V W Sbjct 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP Sbjct 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I Sbjct 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 346 AIQTQLLDLAKTKTEALATA 365 >gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006] gi|308341096|gb|EFP29947.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006] Length=384 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 198/320 (62%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L + G L+ + E EL AMSAA++DRYLK Sbjct 49 VWALMGMPCGKYLVVMLELWLPLVAASGDLD---KPFATEAAVAELKAMSAATVDRYLKP 105 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL Sbjct 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ GW ++RNNA IL G+K P +T D D G F+N V W Sbjct 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP Sbjct 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I Sbjct 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 346 AIQMQLLDLAKTKTEALATA 365 >gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166 [Mycobacterium tuberculosis KZN 1435] gi|289553405|ref|ZP_06442615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|253319611|gb|ACT24214.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289438037|gb|EFD20530.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|328457881|gb|AEB03304.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] gi|339295655|gb|AEJ47766.1| hypothetical protein CCDC5079_2576 [Mycobacterium tuberculosis CCDC5079] Length=383 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 198/320 (62%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L + G L+ + E EL AMSAA++DRYLK Sbjct 48 VWALMGMPCGKYLVVMLELWLPLVAAAGDLD---KPFATEAAVAELKAMSAATVDRYLKP 104 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL Sbjct 105 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 164 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ GW ++RNNA IL G+K P +T D D G F+N V W Sbjct 165 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 224 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP Sbjct 225 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 284 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I Sbjct 285 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 344 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 345 AIQMQLLDLAKTKTEALATA 364 >gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycobacterium tuberculosis CDC1551] gi|31793983|ref|NP_856476.1| hypothetical protein Mb2830 [Mycobacterium bovis AF2122/97] gi|148823996|ref|YP_001288750.1| hypothetical protein TBFG_12821 [Mycobacterium tuberculosis F11] 51 more sequence titles Length=384 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 198/320 (62%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L + G L+ + E EL AMSAA++DRYLK Sbjct 49 VWALMGMPCGKYLVVMLELWLPLVAAAGDLD---KPFATEAAVAELKAMSAATVDRYLKP 105 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL Sbjct 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ GW ++RNNA IL G+K P +T D D G F+N V W Sbjct 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP Sbjct 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I Sbjct 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 346 AIQMQLLDLAKTKTEALATA 365 >gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 [Mycobacterium africanum GM041182] gi|339332174|emb|CCC27882.1| conserved hypothetical protein [Mycobacterium africanum GM041182] Length=384 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 198/320 (62%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L + G L+ + E EL AMSAA++DRYLK Sbjct 49 VWALMGMPCGKYLVVMLELWLPLVAAAGDLD---KPFATEAAVAELKAMSAATVDRYLKP 105 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL Sbjct 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ GW ++RNNA IL G+K P +T D D G F+N V W Sbjct 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP Sbjct 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I Sbjct 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 346 AIQMQLLDLAKTKTEALATA 365 >gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycobacterium tuberculosis H37Rv] gi|148662649|ref|YP_001284172.1| hypothetical protein MRA_2831 [Mycobacterium tuberculosis H37Ra] gi|167967620|ref|ZP_02549897.1| hypothetical protein MtubH3_06126 [Mycobacterium tuberculosis H37Ra] 10 more sequence titles Length=384 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 156/320 (49%), Positives = 197/320 (62%), Gaps = 5/320 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59 VW+ G CGKYL + L L G L+ + E EL AMSAA++DRYLK Sbjct 49 VWALMGMPCGKYLVVMLELWLPLEAAAGDLD---KPFATEAAVAELKAMSAATVDRYLKP 105 Query 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL Sbjct 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TD+ GW ++RNNA IL G+K P +T D D G F+N V W Sbjct 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP Sbjct 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 298 T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I Sbjct 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345 Query 299 DLQNRLLILAKEKTEQLYLA 318 +Q +LL LAK KTE L A Sbjct 346 AIQMQLLDLAKTKTEALATA 365 >gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevibacterium linens] Length=418 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 149/320 (47%), Positives = 200/320 (63%), Gaps = 11/320 (3%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR----EELLAMSAASIDRY 56 VW+ G CGKY + + L LE+ G L+ P V EEL +MSAA+IDRY Sbjct 84 VWALMGMPCGKYFVVMLPMWLPLLEQAGDLDH------PFVSATAIEELESMSAATIDRY 137 Query 57 LKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAH 116 L A+ Q+ G+STTKP PLLRNSI + + GDE G E DTVAHCGP+ GEFA Sbjct 138 LAPARQSMQLRGISTTKPPPLLRNSIGLSKTGDEPPTVAGVIEADTVAHCGPSYVGEFAR 197 Query 117 TLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWA 176 TL +TD+ GW ++RNNA IL + + P + D DNG+ F+N V W Sbjct 198 TLTMTDMVTGWTENASIRNNASKWILEAVADLDGKFPFELRVFDSDNGSEFINHEVADWL 257 Query 177 GDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNY 235 I TR RPY+KN AT+ESKNNH+VRK+AFY+RYDT+EE +L ++W LV+ RLN+ Sbjct 258 QQRDIDQTRSRPYRKNDQATVESKNNHVVRKHAFYWRYDTSEELGLLGQLWPLVSLRLNF 317 Query 236 LTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGR 295 PT KP+ YA+++DGRRRR+YD+P+TP R L + +L+ Q + D +NPA + R Sbjct 318 FVPTKKPVEYATTSDGRRRRVYDSPRTPWRRVLDSGLLTDDQVTAISERVDGVNPADLTR 377 Query 296 KIADLQNRLLILAKEKTEQL 315 +I +Q RL+ L+K KTE + Sbjct 378 QINQIQMRLIELSKSKTEAM 397 >gi|260905080|ref|ZP_05913402.1| hypothetical protein BlinB_07094 [Brevibacterium linens BL2] Length=205 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/205 (64%), Positives = 161/205 (79%), Gaps = 1/205 (0%) Query 133 VRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKN 192 +RNNA T+ILAGLK + +IP ITGLDF NG+ FLN+ VI WAG GIYFTR RPY+KN Sbjct 1 MRNNAHTNILAGLKTAARKIPFEITGLDFYNGSEFLNQYVIEWAGSKGIYFTRSRPYRKN 60 Query 193 -HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPTIKPIGYASSADG 251 ATIESKNNH+VR+Y FYYRYDT ER LNR+W L NDR+NYL PTIKP GY S+ +G Sbjct 61 DQATIESKNNHVVRRYGFYYRYDTDLERRALNRLWHLDNDRVNYLMPTIKPTGYGSTRNG 120 Query 252 RRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIADLQNRLLILAKEK 311 RR+R+YDAP+TP DR L A VLS Q D+ YRDSLNPA+I +IA +Q+RLL+L+ +K Sbjct 121 RRKRVYDAPRTPFDRLLDAGVLSPKQVKDMTAYRDSLNPAKIAAEIARVQDRLLVLSSKK 180 Query 312 TEQLYLANIPTALPDIHKGILIKAG 336 TEQ+YLA+ P+ALPD+ KG+ +K G Sbjct 181 TEQMYLASFPSALPDVRKGVRVKTG 205 >gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brevibacterium linens BL2] Length=389 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/312 (45%), Positives = 192/312 (62%), Gaps = 13/312 (4%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW SG Q GKYLAA+M + LD LERH L+ G D YGPE+REELL++S ASIDRYL+ A Sbjct 75 VWDWSGRQSGKYLAAAMPVLLDALERHDSLQPGEDGYGPEIREELLSVSPASIDRYLQCA 134 Query 61 KAKD----QISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAH 116 + D +S + PS + AG E E EPGFF DTVAH G T+ G Sbjct 135 RTCDFATRNVSTRRSHAPSAEFLDF-----AGGENENEPGFFMADTVAHAGSTVGGHSVI 189 Query 117 TLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEI---PHGITGLDFDNGTVFLNKPVI 173 TLN T +H GWVFTR++ +NA + L+ ++ EI P + ++ N +++ V Sbjct 190 TLNATCLHTGWVFTRSLADNAPDRVADILQWALDEITGIPFWVNAVELSNACERVHEAVG 249 Query 174 SWAGDNGIYFTRF-RPYKKNHATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDR 232 SWA I+++ + ++++ SK+ HLV +Y F RYDT E R+ LN +W+ VNDR Sbjct 250 SWARALDIHYSPVPKDHRRDRLPEASKHQHLVHEYGFVERYDTEEARSALNHLWRAVNDR 309 Query 233 LNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQ 292 LN+ TP KP+ ++ + G R+R+YD P TPL R A V+S Q+A+LITYR+SLNPA+ Sbjct 310 LNFFTPIRKPVAWSRDSAGHRKRIYDDPATPLARLRDAGVMSPVQEAELITYRNSLNPAR 369 Query 293 IGRKIADLQNRL 304 + +I+ Q RL Sbjct 370 LSEEISQWQTRL 381 >gi|260906447|ref|ZP_05914769.1| Integrase catalytic region [Brevibacterium linens BL2] Length=280 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/189 (61%), Positives = 140/189 (75%), Gaps = 0/189 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWS +GG CGKYLA +MV L+ LE H L G+ RY VR+EL++MS A+IDRYL A Sbjct 91 VWSVAGGICGKYLAQAMVDLLNSLEAHNHLVPGQGRYSTNVRDELVSMSPATIDRYLAPA 150 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 +A+D + G S TKP LLRNSI+VR+AGDEVEAEPGFFE DTVAHCGPTLKGEF ++N Sbjct 151 RARDTLRGKSATKPGTLLRNSIQVRKAGDEVEAEPGFFEVDTVAHCGPTLKGEFIRSVNY 210 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TD+H GWV+TR V+NNA HI+A V +P+ +TGLDFDNG+ F+N +I WA Sbjct 211 TDMHTGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGLDFDNGSEFINHDLIDWAAQRK 270 Query 181 IYFTRFRPY 189 I+FTR RPY Sbjct 271 IFFTRGRPY 279 >gi|31794303|ref|NP_856796.1| hypothetical protein Mb3151c [Mycobacterium bovis AF2122/97] gi|121639010|ref|YP_979234.1| hypothetical protein BCG_3150c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824321|ref|YP_001289075.1| hypothetical protein TBFG_13148 [Mycobacterium tuberculosis F11] 31 more sequence titles Length=116 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 115/116 (99%), Positives = 116/116 (100%), Gaps = 0/116 (0%) Query 221 VLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD 280 +LNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD Sbjct 1 MLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD 60 Query 281 LITYRDSLNPAQIGRKIADLQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG 336 LITYRDSLNPAQIGRKIADLQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG Sbjct 61 LITYRDSLNPAQIGRKIADLQNRLLILAKEKTEQLYLANIPTALPDIHKGILIKAG 116 >gi|338753668|gb|AEI96657.1| integrase core domain-containing protein [Bifidobacterium longum subsp. longum KACC 91563] Length=438 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/330 (42%), Positives = 190/330 (58%), Gaps = 23/330 (6%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW CGKYL A + L L G L D Y EL+AMSA++IDRYLK Sbjct 83 VWVLMDMPCGKYLKAMLPQWLPVLRDCGEL----DAYDGFTFSELMAMSASTIDRYLKPL 138 Query 61 KAKDQISGVSTTKPS-PLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + G++ T+P+ LLRNSI +R+A DE++ PG E DTVAHCGP+LKGEF TL Sbjct 139 RDAARPKGLAATRPAGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLT 198 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 + D GW + RNNA ++ +P I D DNG+ F+N I+ Sbjct 199 VVDFATGWTENASARNNAYRNLSQAEAMIEQRLPFTIRSYDNDNGSEFINTDFITHLQQL 258 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN AT+ES+NNH+VRK+AFYYRY+ A E +LN +W+LV+ ++N TP Sbjct 259 DIQQTRSRPYRKNDQATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLVSVKVNLFTP 317 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD------LITYRDSL---- 288 + KP+G +S+ DGR RR+YD P TP +R + +AD L RD + Sbjct 318 SKKPVGRSSTRDGRPRRVYDQPTTPWER---LKRFDEQDRADGGTGFILPERRDQIERLI 374 Query 289 ---NPAQIGRKIADLQNRLLILAKEKTEQL 315 NPA++ R+I +Q++L +A +T +L Sbjct 375 AETNPAELVRRIHAIQDQLEDMAAPRTRRL 404 >gi|338755106|gb|AEI98095.1| integrase core domain-containing protein [Bifidobacterium longum subsp. longum KACC 91563] gi|338755216|gb|AEI98205.1| integrase core domain-containing protein [Bifidobacterium longum subsp. longum KACC 91563] Length=377 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/330 (42%), Positives = 190/330 (58%), Gaps = 23/330 (6%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW CGKYL A + L L G L D Y EL+AMSA++IDRYLK Sbjct 22 VWVLMDMPCGKYLKAMLPQWLPVLRDCGEL----DAYDGFTFSELMAMSASTIDRYLKPL 77 Query 61 KAKDQISGVSTTKPS-PLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + G++ T+P+ LLRNSI +R+A DE++ PG E DTVAHCGP+LKGEF TL Sbjct 78 RDAARPKGLAATRPAGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLT 137 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 + D GW + RNNA ++ +P I D DNG+ F+N I+ Sbjct 138 VVDFATGWTENASARNNAYRNLSQAEAMIEQRLPFTIRSYDNDNGSEFINTDFITHLQQL 197 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN AT+ES+NNH+VRK+AFYYRY+ A E +LN +W+LV+ ++N TP Sbjct 198 DIQQTRSRPYRKNDQATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLVSVKVNLFTP 256 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD------LITYRDSL---- 288 + KP+G +S+ DGR RR+YD P TP +R + +AD L RD + Sbjct 257 SKKPVGRSSTRDGRPRRVYDQPTTPWER---LKRFDEQDRADGGTGFILPERRDQIERLI 313 Query 289 ---NPAQIGRKIADLQNRLLILAKEKTEQL 315 NPA++ R+I +Q++L +A +T +L Sbjct 314 AETNPAELVRRIHAIQDQLEDMAAPRTRRL 343 >gi|296454294|ref|YP_003661437.1| integrase core domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|296183725|gb|ADH00607.1| Integrase core domain protein [Bifidobacterium longum subsp. longum JDM301] Length=432 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/330 (42%), Positives = 190/330 (58%), Gaps = 23/330 (6%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW CGKYL A + L L G L D Y EL+AMSA++IDRYLK Sbjct 77 VWVLMDMPCGKYLKAMLPQWLPVLRDCGEL----DAYDGFTFSELMAMSASTIDRYLKPL 132 Query 61 KAKDQISGVSTTKPS-PLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + G++ T+P+ LLRNSI +R+A DE++ PG E DTVAHCGP+LKGEF TL Sbjct 133 RDAARPKGLAATRPAGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLT 192 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 + D GW + RNNA ++ +P I D DNG+ F+N I+ Sbjct 193 VVDFATGWTENASARNNAYRNLSQAEAMIEQRLPFTIRSYDNDNGSEFINTDFITHLQQL 252 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN AT+ES+NNH+VRK+AFYYRY+ A E +LN +W+LV+ ++N TP Sbjct 253 DIQQTRSRPYRKNDQATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLVSVKVNLFTP 311 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD------LITYRDSL---- 288 + KP+G +S+ DGR RR+YD P TP +R + +AD L RD + Sbjct 312 SKKPVGRSSTRDGRPRRVYDQPTTPWER---LKRFDEQDRADGGTGFILPERRDQIERLI 368 Query 289 ---NPAQIGRKIADLQNRLLILAKEKTEQL 315 NPA++ R+I +Q++L +A +T +L Sbjct 369 AETNPAELVRRIHAIQDQLEDMAAPRTRRL 398 >gi|296454382|ref|YP_003661525.1| integrase core domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|296183813|gb|ADH00695.1| Integrase core domain protein [Bifidobacterium longum subsp. longum JDM301] Length=432 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 137/330 (42%), Positives = 189/330 (58%), Gaps = 23/330 (6%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW CGKYL A + L L G L D Y EL+AMSA++IDRYLK Sbjct 77 VWVLMDMPCGKYLKAMLPQWLPVLRDCGEL----DAYDGFTFSELMAMSASTIDRYLKPL 132 Query 61 KAKDQISGVSTTKPS-PLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + G++ T+P+ LLRNSI +R+A DE++ PG E DTVAHCGP+LKGEF TL Sbjct 133 RDAARPKGLAATRPAGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLT 192 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 + D GW + RNNA ++ P I D DNG+ F+N I+ Sbjct 193 VVDFATGWTENASARNNAYRNLSQAEAMIEQRPPFTIRSYDNDNGSEFINTDFITHLQQL 252 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN AT+ES+NNH+VRK+AFYYRY+ AE +LN +W+LV+ ++N TP Sbjct 253 DIQQTRSRPYRKNDQATVESRNNHVVRKHAFYYRYELAE-LDLLNELWQLVSVKVNLFTP 311 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQAD------LITYRDSL---- 288 + KP+G +S+ DGR RR+YD P TP +R + +AD L RD + Sbjct 312 SKKPVGRSSTRDGRPRRVYDQPTTPWER---LKRFDEQDRADGGTGFILPERRDQIERLI 368 Query 289 ---NPAQIGRKIADLQNRLLILAKEKTEQL 315 NPA++ R+I +Q++L +A +T +L Sbjct 369 AETNPAELVRRIHAIQDQLEDMAAPRTRRL 398 >gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacterium longum subsp. longum F8] Length=436 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/327 (40%), Positives = 186/327 (57%), Gaps = 17/327 (5%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW C KYL A + L L HG L Y EL MS+A++DRYL+ Sbjct 81 VWLMMDLPCAKYLKAMLPTWLPMLRAHGELA----DYDGFAFLELERMSSATMDRYLEKT 136 Query 61 KAKDQISGVSTTKPS-PLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + G T+P+ LLRNSI +R+AGDE++ PG E DTVAHCGP+ +GEF TL Sbjct 137 RDAARPRGTVPTRPAGELLRNSIAIRKAGDELDGLPGNVEADTVAHCGPSARGEFCRTLT 196 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 + D+ GW + RNNA + + +P I D DNG+ F+N+ +I+W + Sbjct 197 VVDIATGWTENASCRNNAFVNFSKAEETIEGRMPFRIRPYDTDNGSEFINRDLIAWLQER 256 Query 180 GIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPY+KN AT+ES+NNH+VR++AF+YRY T +E +LN +W+LV + N TP Sbjct 257 DIEQTRSRPYRKNDQATVESRNNHIVRRHAFHYRY-TVDELGLLNELWELVRIKANLFTP 315 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDR----------PLAARVLSAAQQADLITYRDSL 288 + KP+G A + DGR RR+YD P+TP +R + ++ ++ + Sbjct 316 SKKPVGRACTRDGRPRRVYDEPRTPWERLKEFDEKDRAAGGPGFILPGKREEIERIIATT 375 Query 289 NPAQIGRKIADLQNRLLILAKEKTEQL 315 NPA++ R+I +Q+RL LA +T QL Sbjct 376 NPAELVRRIHAIQDRLEALAAPRTAQL 402 >gi|289759256|ref|ZP_06518634.1| transposase [Mycobacterium tuberculosis T85] gi|289714820|gb|EFD78832.1| transposase [Mycobacterium tuberculosis T85] Length=167 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/126 (87%), Positives = 113/126 (90%), Gaps = 2/126 (1%) Query 70 STTKPSPLLRNSIKVR--RAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGW 127 ST + S LR+ I+ G +EAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGW Sbjct 42 STPETSRRLRSQIRESPDSPGRFIEAEPGFFEGDTVAHCGPTLKGEFAHTLNLTDVHIGW 101 Query 128 VFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFR 187 VFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFR Sbjct 102 VFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIYFTRFR 161 Query 188 PYKKNH 193 PYKKNH Sbjct 162 PYKKNH 167 >gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brevibacterium linens BL2] Length=218 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 107/214 (50%), Positives = 141/214 (66%), Gaps = 3/214 (1%) Query 123 VHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGIY 182 +H GWV+TR V+NNA HI+A V +P+ +TGLDFDNG+ F+N +I WA I+ Sbjct 1 MHTGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGLDFDNGSEFINHDLIDWAAQRKIF 60 Query 183 FTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPTIK 241 FTR RPY KN ATIESKNNHLVR+Y FYYRYDT E ++ +W LVNDRLNY TPT K Sbjct 61 FTRGRPYTKNDQATIESKNNHLVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKK 120 Query 242 PIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIADLQ 301 P GY++ + GRR+R+YD P+TP R L + +L+ Q A+L Y+ L+P I +I +Q Sbjct 121 PTGYSTDSVGRRKRVYDTPRTPFVRLLDSGILNRKQVAELRAYKAGLDPVHIAAEIDRIQ 180 Query 302 NRLLILAKEKTEQLYLA-NIPTALPDIHKGILIK 334 RL+ LA KT ++ ALPD GI ++ Sbjct 181 QRLIKLAAGKTARMEREIEAKQALPD-SSGIRVR 213 >gi|325963578|ref|YP_004241484.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3] gi|323469665|gb|ADX73350.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3] Length=318 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 122/239 (52%), Positives = 144/239 (61%), Gaps = 1/239 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW G GKYLAA M L+ L R L DR P V +EL MSAA+IDRYLK Sbjct 80 VWRLVGQPSGKYLAAVMDDLLERLVRFRELGKVADRVTPLVLDELRQMSAATIDRYLKPH 139 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 K +S TKPS +LR+SI +R A D+ PGF E DTVAHCG T+KGEF TLN Sbjct 140 KDAAYPVALSGTKPSHILRSSIPLRTAMDDPITNPGFLELDTVAHCGHTMKGEFLWTLNA 199 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TD IGW RTV+N A TH+ GL+ P I G+DFDNG FLN VI+WA Sbjct 200 TDPVIGWTMMRTVKNKAFTHVHTGLEWINKHAPIPIAGMDFDNGGEFLNWSVIAWADKRK 259 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I TR RPYK N +A IE +N VRK+AF YRY++A E +LN +W LV R N+L P Sbjct 260 IPLTRTRPYKHNDNAHIEQRNGDWVRKHAFRYRYESAAELTLLNELWDLVMARKNHLLP 318 >gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895944|gb|EFG75636.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=242 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/223 (48%), Positives = 140/223 (63%), Gaps = 1/223 (0%) Query 97 FFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGI 156 E DTVAHCGPTL GEFA TL +TD+ IGW ++RNNA I AG+ P + Sbjct 1 MIEADTVAHCGPTLIGEFARTLTMTDLVIGWTENFSIRNNASKWITAGIDELQQRFPFDL 60 Query 157 TGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDT 215 D G F+N V +W I T RPY+KN A +ESKNNH+VRK+AFY+RYDT Sbjct 61 VIFALDCGGEFINHEVAAWLQTRDIAQTHSRPYQKNDQAHVESKNNHVVRKHAFYWRYDT 120 Query 216 AEERAVLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSA 275 +EE +LNR+WKLV+ R N+ TPT KPIGY+++A RR R+YD P TP R + +L A Sbjct 121 SEELELLNRLWKLVSLRCNFFTPTKKPIGYSTTAASRRTRIYDTPATPWQRLQESGILDA 180 Query 276 AQQADLITYRDSLNPAQIGRKIADLQNRLLILAKEKTEQLYLA 318 Q + + + +NPA + R+I +Q +LL LAK KT+ L A Sbjct 181 QQLSHVSARIEGINPADLTRQINTIQMQLLDLAKTKTDALAAA 223 >gi|254552217|ref|ZP_05142664.1| hypothetical protein Mtube_17478 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=128 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/98 (99%), Positives = 97/98 (99%), Gaps = 0/98 (0%) Query 17 MVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSP 76 MVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSP Sbjct 1 MVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSP 60 Query 77 LLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEF 114 LLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGE Sbjct 61 LLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEL 98 >gi|326773220|ref|ZP_08232503.1| integrase domain protein [Actinomyces viscosus C505] gi|326636450|gb|EGE37353.1| integrase domain protein [Actinomyces viscosus C505] Length=382 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 101/193 (53%), Positives = 126/193 (66%), Gaps = 2/193 (1%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VW ASGGQCGKYL SM L LD LE G L+ RY P V +EL+AMSAA+IDR+L Sbjct 7 VWPASGGQCGKYLKESMPLLLDLLEASGELD-DEPRYTPAVSDELVAMSAATIDRHLAPV 65 Query 61 KAKDQISGVSTTKPSPL-LRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119 +A +Q+ G STTK PL + R E+EAEPGFFE DTVAHCGPTLKGE T+N Sbjct 66 RATEQLRGKSTTKTGPLAFAAPSRSARPAGEIEAEPGFFEVDTVAHCGPTLKGESTRTVN 125 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 +TDV GW FTR++RNNA HI++ L A+V +P + G+DF G+ F+N V+ WA D Sbjct 126 MTDVLTGWTFTRSIRNNAEKHIISALDAAVGCVPFPVLGVDFVGGSEFINHSVVRWAADL 185 Query 180 GIYFTRFRPYKKN 192 IY P ++ Sbjct 186 DIYSRPLTPLQEE 198 >gi|289759257|ref|ZP_06518635.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289714821|gb|EFD78833.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=167 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/107 (90%), Positives = 98/107 (92%), Gaps = 1/107 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 46 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 105 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCG 107 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEV PG GD+ + G Sbjct 106 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVVNRPG-MSGDSSSWKG 151 >gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desulfitobacterium hafniense Y51] gi|89333500|dbj|BAE83095.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length=390 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 114/305 (38%), Positives = 160/305 (53%), Gaps = 7/305 (2%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 +W+ CGK LA +M LD L L FG R + +L MSA+SIDR LK Sbjct 86 IWTIMDFACGKRLAEAMEDILDAL-----LRFGELRCSEDTLRKLRRMSASSIDRLLKKD 140 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 KA ++ G+STTKP LL+ I +R +A PG+ E D VAHCG + GE+ +TLN+ Sbjct 141 KASLRLKGLSTTKPGTLLKRDIPIRLGQQWDDAVPGYVEVDLVAHCGASTAGEYVNTLNV 200 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TD+ GW V N A+ H+ AGL A P G+D DNG+ F+N + + G Sbjct 201 TDICTGWTEPVAVLNKAQKHVFAGLMAVQDRQPFPYLGIDSDNGSEFINHELKRYCDQEG 260 Query 181 IYFTRFRPYKKNHAT-IESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 I FTR RPY KN +E KN LVR++ Y RY+ A+LN+ + L+ +N+ P+ Sbjct 261 ICFTRSRPYTKNDGCHVEQKNWSLVRRHIGYGRYEGQAALALLNQYYGLLRRYVNFFQPS 320 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 K I +R Y+ PQTP R LA + + +L +NPAQ+ R + Sbjct 321 TKLIEKQRIGAKVLKR-YEKPQTPYKRVLADNHIPDTVKDNLTHAFQQINPAQLMRDMQR 379 Query 300 LQNRL 304 ++ L Sbjct 380 VKTEL 384 >gi|339295962|gb|AEJ48073.1| hypothetical protein CCDC5079_2883 [Mycobacterium tuberculosis CCDC5079] gi|339299571|gb|AEJ51681.1| hypothetical protein CCDC5180_2844 [Mycobacterium tuberculosis CCDC5180] Length=122 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 95/107 (89%), Positives = 98/107 (92%), Gaps = 1/107 (0%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 +WSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA Sbjct 1 MWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCG 107 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEV PG GD+ + G Sbjct 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVVNRPG-MSGDSSSWKG 106 >gi|339627742|ref|YP_004719385.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY] gi|339285531|gb|AEJ39642.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY] Length=416 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/308 (38%), Positives = 162/308 (53%), Gaps = 10/308 (3%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 W+ GK L + ++ LE HG P VR++L+ MSAASIDR+L Sbjct 101 CWAILNFPTGKRLQPFLPELVERLEAHGERHLE-----PTVRDQLVQMSAASIDRFLAAE 155 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEA-EPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + ++ G S TKP PLL+ I VR + +A PGF E D V+H G +GEFA TL+ Sbjct 156 RRRLEVKGRSGTKPGPLLKQQIPVRTWAEWDDATHPGFLEIDLVSHDGGAARGEFAWTLD 215 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 L D+ GW T + N AR ++ L ++ P I G+D DNG+ F+N +++W + Sbjct 216 LVDILTGWTETVALPNKARKWVIEALDTQLSRFPFPIRGIDSDNGSEFINHHLLTWCDSH 275 Query 180 GIYFTRFRPYKKNHAT-IESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I FTR R Y KN +E KN +VR++ Y RY+ AE+ LN ++ + ++ P Sbjct 276 PIMFTRARAYHKNDGCYVEQKNWSVVRRFVGYLRYEGAEQVQWLNDLYATLRLYTHFFQP 335 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAA--RVLSAAQQADLITYRDSLNPAQIGRK 296 K + R R YD QTP R LA ++S AQ+A L SLNPA I R Sbjct 336 LQKTVAKERRG-ARTYRRYDQAQTPYQRVLALPDTLVSPAQKAVLTAQYTSLNPAAIRRD 394 Query 297 IADLQNRL 304 + LQNRL Sbjct 395 LLRLQNRL 402 >gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY] gi|339284782|gb|AEJ38893.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY] Length=389 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 114/308 (38%), Positives = 162/308 (53%), Gaps = 10/308 (3%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 W+ GK L + ++ LE HG L P VR++L+ MSAASIDR+L Sbjct 74 CWAILNFPTGKRLHPFLPELVERLEAHGELHLE-----PAVRDQLVQMSAASIDRFLAAE 128 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEA-EPGFFEGDTVAHCGPTLKGEFAHTLN 119 + + ++ G S TKP LL+ I VR + +A PGF E D V+H G +GEFA TL+ Sbjct 129 RRRLEVKGRSGTKPGTLLKQQIPVRTWAEWDDATHPGFLEIDLVSHDGGAARGEFAWTLD 188 Query 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179 L D+ GW T + N AR ++ L A ++ P I G+D DNG+ F+N +++W + Sbjct 189 LVDILTGWTETVALPNKARKWVIEALDAQLSRFPFPIRGIDSDNGSEFINHHLLTWCESH 248 Query 180 GIYFTRFRPYKKNHAT-IESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 238 I FTR R Y KN +E KN +VR++ Y RY+ AE+ LN ++ + N+ P Sbjct 249 HITFTRSRAYHKNDGCYVEQKNWSVVRRFVGYLRYEGAEQVQWLNDLYATLRLYTNFFQP 308 Query 239 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAA--RVLSAAQQADLITYRDSLNPAQIGRK 296 K + R R YD Q P R +A ++S+ Q+A L SLNPA I R Sbjct 309 LQKAVAKERRG-ARTYRRYDQAQPPYQRVMALPDTLVSSTQKAALKAQYASLNPAAIRRD 367 Query 297 IADLQNRL 304 + LQNRL Sbjct 368 LLRLQNRL 375 >gi|42528088|ref|NP_973186.1| integrase domain-containing protein [Treponema denticola ATCC 35405] gi|41819133|gb|AAS13105.1| integrase domain protein [Treponema denticola ATCC 35405] Length=400 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 103/310 (34%), Positives = 170/310 (55%), Gaps = 9/310 (2%) Query 1 VWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTA 60 +W S C K L + +D + +FG Y +++ +L +S+A++ R LK Sbjct 95 LWIFSMYLCSKRLVPFIRDNIDYFAQ----KFG---YSEQLKAKLARISSATVGRILKPE 147 Query 61 KAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNL 120 K I G+STT+P+ L I +R D E +PGFFE DTVA+CG + KG++ TL L Sbjct 148 IPKHSIRGISTTRPAKNLNKLIPIRTFFDWDERKPGFFEVDTVANCGISTKGQYICTLTL 207 Query 121 TDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNG 180 TDVH GW R + N A + ++ +P + G+D DNG+ F N ++ W N Sbjct 208 TDVHSGWTENRALLNKAHRWVKEAIEDVKINLPFQMKGIDSDNGSEFKNIQLLQWCNTNN 267 Query 181 IYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPT 239 + FTR R KKN + +E KN+ +VR+ YYR++ E R+V+ +++ N +N+ P+ Sbjct 268 VIFTRSRSCKKNDNCFVEQKNDSVVRRIVGYYRFEGEETRSVMADLYEQYNMLVNFFFPS 327 Query 240 IKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIAD 299 +K I D + + YD +TP R + + +S A++ +L +DSL+ Q+ K + Sbjct 328 MKIIS-KHRVDAKVIKKYDEAKTPYRRLMESSDISDAEKNELQCRKDSLDLQQLIDKTQE 386 Query 300 LQNRLLILAK 309 LQ++L+ +A+ Sbjct 387 LQSKLISMAQ 396 >gi|298248996|ref|ZP_06972800.1| Integrase catalytic region [Ktedonobacter racemifer DSM 44963] gi|297547000|gb|EFH80867.1| Integrase catalytic region [Ktedonobacter racemifer DSM 44963] Length=529 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/304 (33%), Positives = 157/304 (52%), Gaps = 8/304 (2%) Query 2 WSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVREELLAMSAASIDRYLKTAK 61 W+A+ C K L + + LERHG L + R +LL MS A+ DR L+ + Sbjct 81 WTAANHICAKRLIPFLPTLVASLERHGHLHLSE-----KCRSQLLTMSPATADRILQPYR 135 Query 62 AKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLNLT 121 K + G+STT+ LL+ I VR D E +PGF E D VAHCG G + +TL LT Sbjct 136 -KQERHGISTTRSGTLLKKQIPVRPFNDWNETQPGFLEADLVAHCGTHADGSYLYTLTLT 194 Query 122 DVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDNGI 181 D+ GW + N + ++ LK + +P + G+D DNG F+N ++++ I Sbjct 195 DIATGWTECLPLLNRGQEAVIVALKRAQQLLPFPLLGIDTDNGGEFINAELLTFCEQEHI 254 Query 182 YFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPTI 240 FTR RP + N +E KN +VR+ Y R++ L +++ + +N P++ Sbjct 255 TFTRGRPRRSNDQCYVEQKNGQIVRQVVGYDRFEGRLASQQLTELYRALRVYVNCFQPSM 314 Query 241 KPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIADL 300 K + + RR YD QTP+ R LA+ +LS A+Q DL+ ++L+P ++ ++ L Sbjct 315 K-LALKEREGSKVRRTYDQAQTPMQRLLASGILSEAKQQDLLRITEALDPLRLLTQLEHL 373 Query 301 QNRL 304 Q L Sbjct 374 QKAL 377 >gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY] gi|339286411|gb|AEJ40522.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY] Length=281 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/268 (39%), Positives = 146/268 (55%), Gaps = 5/268 (1%) Query 41 VREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEA-EPGFFE 99 +R++L+ MS ASIDR+L + + ++ G S TKP LL+ I VR + +A PGF E Sbjct 1 MRDQLVQMSVASIDRFLAAERRRLEVKGRSVTKPGTLLKQQIPVRTWAEWDDATHPGFLE 60 Query 100 GDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGL 159 D V+H G +GEFA TL+L D+ GW T + N AR ++ L ++ P I G+ Sbjct 61 IDLVSHDGGAARGEFAWTLDLVDILTGWTETVALPNKARKWVIEALDTQLSRFPFPIRGI 120 Query 160 DFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKNHAT-IESKNNHLVRKYAFYYRYDTAEE 218 D DNG+ F+N +++W + I FTR R Y KN +E KN +VR++ Y RY+ AE+ Sbjct 121 DSDNGSEFINHHLLTWCESHPITFTRARAYHKNDGCYVEQKNWSVVRRFVGYLRYEGAEQ 180 Query 219 RAVLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAA--RVLSAA 276 LN ++ + N+ P K + R R YD QTP R LA +S A Sbjct 181 VQWLNDLYATLRLYANFFQPLQKAVAKERRG-ARTYRRYDQAQTPYQRVLALPDSWVSPA 239 Query 277 QQADLITYRDSLNPAQIGRKIADLQNRL 304 Q+A L SLNPA I R + LQNRL Sbjct 240 QKAVLTAQYLSLNPAAIRRDLLRLQNRL 267 >gi|320536591|ref|ZP_08036613.1| integrase core domain protein [Treponema phagedenis F0421] gi|320146562|gb|EFW38156.1| integrase core domain protein [Treponema phagedenis F0421] Length=301 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 93/273 (35%), Positives = 157/273 (58%), Gaps = 2/273 (0%) Query 37 YGPEVREELLAMSAASIDRYLKTAKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPG 96 Y E++ +L +S+A+I R+LK AK + G+STT+P+ L I +R D E +PG Sbjct 23 YSDELKMKLGKISSATIGRFLKPEIAKCSVKGISTTRPAKNLNQLIPIRTFFDWDERKPG 82 Query 97 FFEGDTVAHCGPTLKGEFAHTLNLTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGI 156 F E DTVAHCG + GE+ +TL +TD++ GW R + N A + ++ + T++P + Sbjct 83 FLELDTVAHCGTSTSGEYINTLTVTDIYSGWTENRALLNKAHRWVKEAIEDTKTKLPFVM 142 Query 157 TGLDFDNGTVFLNKPVISWAGDNGIYFTRFRPYKKN-HATIESKNNHLVRKYAFYYRYDT 215 GL DNG F N V+ W +NGI F+R RPYKKN + +E KN+ +VR+ YYR++ Sbjct 143 KGLHSDNGGEFKNMQVLIWCQENGIDFSRSRPYKKNDNCFVEQKNDSVVRRVIGYYRFEG 202 Query 216 AEERAVLNRMWKLVNDRLNYLTPTIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSA 275 + ++ ++++ +NY P++K I D + + YD +TP R L + + Sbjct 203 EQSLRLMQELYEVYGCLVNYFFPSMKIIS-KERIDKKVIKKYDTAKTPYSRLLESPDVPE 261 Query 276 AQQADLITYRDSLNPAQIGRKIADLQNRLLILA 308 ++A+L + +L+ +++ K+ +LQ L+ A Sbjct 262 KEKAELRRRKAALDLSELLVKVTELQKALIATA 294 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 605194074128 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40