BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3129
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842702|ref|NP_337739.1| hypothetical protein MT3215 [Mycoba... 224 3e-57
gi|340628105|ref|YP_004746557.1| hypothetical protein MCAN_31431... 221 4e-56
gi|240168624|ref|ZP_04747283.1| hypothetical protein MkanA1_0488... 154 6e-36
gi|118617909|ref|YP_906241.1| hypothetical protein MUL_2418 [Myc... 150 8e-35
gi|342861027|ref|ZP_08717676.1| hypothetical protein MCOL_19187 ... 149 2e-34
gi|118464826|ref|YP_883161.1| hypothetical protein MAV_4009 [Myc... 149 2e-34
gi|41409275|ref|NP_962111.1| hypothetical protein MAP3177 [Mycob... 148 2e-34
gi|254820381|ref|ZP_05225382.1| hypothetical protein MintA_10651... 142 2e-32
gi|118470852|ref|YP_889489.1| hypothetical protein MSMEG_5243 [M... 123 8e-27
gi|289751805|ref|ZP_06511183.1| LOW QUALITY PROTEIN: conserved h... 122 2e-26
gi|289444693|ref|ZP_06434437.1| conserved hypothetical protein [... 121 4e-26
gi|108798056|ref|YP_638253.1| hypothetical protein Mmcs_1083 [My... 119 1e-25
gi|120406563|ref|YP_956392.1| hypothetical protein Mvan_5621 [My... 117 4e-25
gi|145221775|ref|YP_001132453.1| hypothetical protein Mflv_1183 ... 112 2e-23
gi|169628136|ref|YP_001701785.1| hypothetical protein MAB_1041 [... 111 3e-23
gi|342861119|ref|ZP_08717768.1| pyridoxamine 5'-phosphate oxidas... 110 7e-23
gi|240171838|ref|ZP_04750497.1| hypothetical protein MkanA1_2116... 109 1e-22
gi|289571339|ref|ZP_06451566.1| conserved hypothetical protein [... 109 2e-22
gi|183983476|ref|YP_001851767.1| hypothetical protein MMAR_3493 ... 108 3e-22
gi|296169078|ref|ZP_06850738.1| helix-turn-helix domain protein ... 108 4e-22
gi|118466288|ref|YP_883259.1| pyridoxamine 5'-phosphate oxidase ... 107 7e-22
gi|41409370|ref|NP_962206.1| hypothetical protein MAP3272 [Mycob... 107 7e-22
gi|254776536|ref|ZP_05218052.1| pyridoxamine 5'-phosphate oxidas... 105 3e-21
gi|340776031|gb|EGR98081.1| pyridoxamine 5'-phosphate oxidase fa... 94.7 4e-18
gi|237785994|ref|YP_002906699.1| hypothetical protein ckrop_1418... 94.7 4e-18
gi|172040203|ref|YP_001799917.1| hypothetical protein cur_0523 [... 94.0 7e-18
gi|213965897|ref|ZP_03394088.1| helix-turn-helix motif-containin... 92.8 1e-17
gi|118473751|ref|YP_890582.1| DNA-binding protein [Mycobacterium... 92.8 1e-17
gi|313836632|gb|EFS74346.1| pyridoxamine 5'-phosphate oxidase fa... 91.3 4e-17
gi|313829578|gb|EFS67292.1| pyridoxamine 5'-phosphate oxidase fa... 91.3 4e-17
gi|289426479|ref|ZP_06428222.1| pyridoxamine 5'-phosphate oxidas... 91.3 5e-17
gi|50842944|ref|YP_056171.1| hypothetical protein PPA1465 [Propi... 91.3 5e-17
gi|126432985|ref|YP_001068676.1| hypothetical protein Mjls_0372 ... 90.1 1e-16
gi|120401649|ref|YP_951478.1| pyridoxamine 5'-phosphate oxidase-... 89.4 2e-16
gi|262201743|ref|YP_003272951.1| pyridoxamine 5'-phosphate oxida... 89.4 2e-16
gi|108797364|ref|YP_637561.1| hypothetical protein Mmcs_0384 [My... 87.8 5e-16
gi|297626612|ref|YP_003688375.1| hypothetical protein PFREUD_145... 81.6 3e-14
gi|25028986|ref|NP_739040.1| hypothetical protein CE2430 [Coryne... 81.3 4e-14
gi|259508050|ref|ZP_05750950.1| helix-turn-helix domain protein ... 81.3 5e-14
gi|343926674|ref|ZP_08766172.1| hypothetical protein GOALK_067_0... 81.3 5e-14
gi|19553734|ref|NP_601736.1| hypothetical protein NCgl2448 [Cory... 81.3 5e-14
gi|344043829|gb|EGV39516.1| hypothetical protein CgS9114_12642 [... 81.3 5e-14
gi|145296534|ref|YP_001139355.1| hypothetical protein cgR_2443 [... 81.3 5e-14
gi|220702557|pdb|3FKH|A Chain A, Crystal Structure Of Putative P... 80.9 6e-14
gi|183448386|pdb|3CP3|A Chain A, Crystal Structure Of Conserved ... 80.9 6e-14
gi|38234444|ref|NP_940211.1| hypothetical protein DIP1874 [Coryn... 80.9 7e-14
gi|21325308|dbj|BAB99929.1| Hypothetical protein [Corynebacteriu... 79.7 1e-13
gi|336459493|gb|EGO38432.1| hypothetical protein MAPs_02930 [Myc... 79.3 2e-13
gi|145220865|ref|YP_001131543.1| pyridoxamine 5'-phosphate oxida... 78.6 3e-13
gi|340795592|ref|YP_004761055.1| hypothetical protein CVAR_2641 ... 77.8 5e-13
>gi|15842702|ref|NP_337739.1| hypothetical protein MT3215 [Mycobacterium tuberculosis CDC1551]
gi|31794305|ref|NP_856798.1| hypothetical protein Mb3153 [Mycobacterium bovis AF2122/97]
gi|57117063|ref|YP_177933.1| hypothetical protein Rv3129 [Mycobacterium tuberculosis H37Rv]
61 more sequence titles
Length=110
Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
+VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE
Sbjct 1 MVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 110
RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR
Sbjct 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 110
>gi|340628105|ref|YP_004746557.1| hypothetical protein MCAN_31431 [Mycobacterium canettii CIPT
140010059]
gi|340006295|emb|CCC45474.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=110
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/110 (98%), Positives = 109/110 (99%), Gaps = 0/110 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
++QGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDA VREAE
Sbjct 1 MMQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAEVREAE 60
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 110
RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR
Sbjct 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 110
>gi|240168624|ref|ZP_04747283.1| hypothetical protein MkanA1_04885 [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/101 (77%), Positives = 82/101 (82%), Gaps = 0/101 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KLF AV VAFEADDH+ AEGWSVIVK RAQVL TDA V++AE
Sbjct 42 VVQDRTVLFRTAEGTKLFLAVTNSPVAFEADDHDAAEGWSVIVKGRAQVLRTDAEVQKAE 101
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFA 101
+A L PW ATLK H VR+IP EITGRHF FGPEPDRS TFA
Sbjct 102 QAGLRPWIATLKLHYVRIIPTEITGRHFMFGPEPDRSDTFA 142
>gi|118617909|ref|YP_906241.1| hypothetical protein MUL_2418 [Mycobacterium ulcerans Agy99]
gi|183981536|ref|YP_001849827.1| hypothetical protein MMAR_1521 [Mycobacterium marinum M]
gi|118570019|gb|ABL04770.1| conserved protein [Mycobacterium ulcerans Agy99]
gi|183174862|gb|ACC39972.1| conserved protein [Mycobacterium marinum M]
Length=142
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/101 (75%), Positives = 81/101 (81%), Gaps = 0/101 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KLF AV VAFEADDH+ EGWSVIVK RAQVL TDA V++AE
Sbjct 42 VVQDRTVLFRTAEGTKLFLAVTSSPVAFEADDHSDTEGWSVIVKGRAQVLRTDAEVQKAE 101
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFA 101
RA+L PW TLK H VRVIP ITGRHF+FGPEPDR+ TFA
Sbjct 102 RAKLSPWIPTLKLHYVRVIPTGITGRHFKFGPEPDRNDTFA 142
>gi|342861027|ref|ZP_08717676.1| hypothetical protein MCOL_19187 [Mycobacterium colombiense CECT
3035]
gi|342131471|gb|EGT84741.1| hypothetical protein MCOL_19187 [Mycobacterium colombiense CECT
3035]
Length=137
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/101 (71%), Positives = 82/101 (82%), Gaps = 0/101 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KLFSAVA AV FE DDHN+ EGWSVIV+ RA++L D +++AE
Sbjct 37 VVQDRTVLFRTAEGTKLFSAVANHAVVFEVDDHNLVEGWSVIVRGRARLLKADTDIQQAE 96
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFA 101
RA+LLPWTATLK H VR+ P E+TGRHFRFGPEPDR + A
Sbjct 97 RARLLPWTATLKPHYVRITPAEVTGRHFRFGPEPDRHEPVA 137
>gi|118464826|ref|YP_883161.1| hypothetical protein MAV_4009 [Mycobacterium avium 104]
gi|254776431|ref|ZP_05217947.1| hypothetical protein MaviaA2_17429 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166113|gb|ABK67010.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=143
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/101 (72%), Positives = 81/101 (81%), Gaps = 0/101 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KLFSAVA AV FE DDHN+ EGWSVIV+ RA++L TD ++ AE
Sbjct 43 VVQDRTVLFRTAEGTKLFSAVANHAVVFEVDDHNLVEGWSVIVRGRARLLKTDTDIQRAE 102
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFA 101
RAQLLPWTATLK H VR+ P E+TGR FRFGPEPDR + A
Sbjct 103 RAQLLPWTATLKPHYVRITPTEVTGRRFRFGPEPDRHEPVA 143
>gi|41409275|ref|NP_962111.1| hypothetical protein MAP3177 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398095|gb|AAS05725.1| hypothetical protein MAP_3177 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459369|gb|EGO38312.1| hypothetical protein MAPs_04680 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=151
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/101 (72%), Positives = 81/101 (81%), Gaps = 0/101 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KLFSAVA AV FE DDHN+ EGWSVIV+ RA++L TD ++ AE
Sbjct 51 VVQDRTVLFRTAEGTKLFSAVANHAVVFEVDDHNLVEGWSVIVRGRARLLKTDTDIQRAE 110
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFA 101
RAQLLPWTATLK H VR+ P E+TGR FRFGPEPDR + A
Sbjct 111 RAQLLPWTATLKPHYVRITPTEVTGRRFRFGPEPDRHEPVA 151
>gi|254820381|ref|ZP_05225382.1| hypothetical protein MintA_10651 [Mycobacterium intracellulare
ATCC 13950]
Length=138
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/95 (72%), Positives = 76/95 (80%), Gaps = 0/95 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
V Q RTVLFRTAEG KLFSAVA AV FE DDHN+ EGWSVIV+ RA++L TDA + A+
Sbjct 43 VAQDRTVLFRTAEGTKLFSAVANHAVVFEVDDHNLVEGWSVIVRGRARLLKTDADIAHAD 102
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPD 95
RAQLLPWTA K H VR+ P E+TGRHFRFGPEPD
Sbjct 103 RAQLLPWTAMRKPHYVRITPTEVTGRHFRFGPEPD 137
>gi|118470852|ref|YP_889489.1| hypothetical protein MSMEG_5243 [Mycobacterium smegmatis str.
MC2 155]
gi|118172139|gb|ABK73035.1| helix-turn-helix motif [Mycobacterium smegmatis str. MC2 155]
Length=147
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/94 (65%), Positives = 72/94 (77%), Gaps = 0/94 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KL SA V FEADDH+V +GWSVIV+ A+ + +A + EA+
Sbjct 49 VVQNRTVLFRTAEGTKLVSAAINNNVLFEADDHDVEQGWSVIVRGVARTVRDEADLAEAQ 108
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEP 94
RA+LLPWTAT K H VRV+P +ITGR FRFGPEP
Sbjct 109 RAELLPWTATAKTHWVRVLPTQITGRRFRFGPEP 142
>gi|289751805|ref|ZP_06511183.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T92]
gi|289692392|gb|EFD59821.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T92]
Length=109
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/56 (100%), Positives = 56/56 (100%), Gaps = 0/56 (0%)
Query 55 GVREAERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 110
GVREAERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR
Sbjct 54 GVREAERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 109
>gi|289444693|ref|ZP_06434437.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289417612|gb|EFD14852.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=87
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/56 (100%), Positives = 56/56 (100%), Gaps = 0/56 (0%)
Query 55 GVREAERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 110
GVREAERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR
Sbjct 32 GVREAERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFACEASSHNQR 87
>gi|108798056|ref|YP_638253.1| hypothetical protein Mmcs_1083 [Mycobacterium sp. MCS]
gi|119867152|ref|YP_937104.1| pyridoxamine 5'-phosphate oxidase-like protein [Mycobacterium
sp. KMS]
gi|126433717|ref|YP_001069408.1| pyridoxamine 5'-phosphate oxidase-like protein [Mycobacterium
sp. JLS]
gi|108768475|gb|ABG07197.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119693241|gb|ABL90314.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Mycobacterium sp. KMS]
gi|126233517|gb|ABN96917.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Mycobacterium sp. JLS]
Length=139
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/92 (66%), Positives = 68/92 (74%), Gaps = 0/92 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KL SA V FEADDHNVAEGWSV+VK A++L D + EAE
Sbjct 44 VVQRRTVLFRTAEGTKLVSAAINHNVLFEADDHNVAEGWSVVVKGVAKILHDDDELAEAE 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGP 92
R QLLPWT+T K+H VR+ P +TGR F FGP
Sbjct 104 RGQLLPWTSTTKQHYVRIRPLTVTGRRFIFGP 135
>gi|120406563|ref|YP_956392.1| hypothetical protein Mvan_5621 [Mycobacterium vanbaalenii PYR-1]
gi|119959381|gb|ABM16386.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=151
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/102 (57%), Positives = 67/102 (66%), Gaps = 0/102 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ TVLFRTAEG KL +A V FEADDHNVAEGWSVI++ +A++L T + EA
Sbjct 50 VVQNNTVLFRTAEGTKLLTAALNEYVLFEADDHNVAEGWSVILRGKARLLATSNELAEAR 109
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQTFAC 102
RA L PW AT K VR+ P +TGR F FGPEPD A
Sbjct 110 RAGLYPWIATQKERFVRITPQSMTGRRFVFGPEPDNGSELAT 151
>gi|145221775|ref|YP_001132453.1| hypothetical protein Mflv_1183 [Mycobacterium gilvum PYR-GCK]
gi|315446487|ref|YP_004079366.1| flavin-nucleotide-binding protein [Mycobacterium sp. Spyr1]
gi|145214261|gb|ABP43665.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315264790|gb|ADU01532.1| predicted flavin-nucleotide-binding protein [Mycobacterium sp.
Spyr1]
Length=147
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/95 (57%), Positives = 65/95 (69%), Gaps = 0/95 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ T+LFRTAEG KL +A V FEADDHNVAEGWSV+V+ +A++L T + EA
Sbjct 47 VVQKNTLLFRTAEGTKLLTAALNEYVVFEADDHNVAEGWSVVVRGKARLLATSNEIAEAR 106
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPD 95
R L PW AT K VR+ P +TGR F FGPEP+
Sbjct 107 RGGLYPWIATQKERFVRITPQTLTGRRFVFGPEPE 141
>gi|169628136|ref|YP_001701785.1| hypothetical protein MAB_1041 [Mycobacterium abscessus ATCC 19977]
gi|169240103|emb|CAM61131.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=144
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 65/95 (69%), Gaps = 0/95 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
V Q TVLFRTAEG KLF AV V FEADD+N GWSV+V+ AQVL+T + EA+
Sbjct 44 VTQRGTVLFRTAEGTKLFGAVVSDQVLFEADDYNDIGGWSVVVRGAAQVLSTSVEIDEAD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPD 95
A L PW TLK H VR+IP +ITGR F FG EPD
Sbjct 104 GAGLYPWIPTLKLHYVRIIPAQITGRRFVFGREPD 138
>gi|342861119|ref|ZP_08717768.1| pyridoxamine 5'-phosphate oxidase [Mycobacterium colombiense
CECT 3035]
gi|342131563|gb|EGT84833.1| pyridoxamine 5'-phosphate oxidase [Mycobacterium colombiense
CECT 3035]
Length=138
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/94 (61%), Positives = 66/94 (71%), Gaps = 0/94 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTA G KL S+ V FEADDHNVAE WSVIV+ RA+ L T + EAE
Sbjct 42 VVQRRTVLFRTAAGTKLVSSAINDRVLFEADDHNVAEAWSVIVRGRARSLRTPEELEEAE 101
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEP 94
RAQ+LPWT K H VR++P +TGR F+FG P
Sbjct 102 RAQVLPWTRPEKTHYVRIVPESVTGRRFQFGSAP 135
>gi|240171838|ref|ZP_04750497.1| hypothetical protein MkanA1_21160 [Mycobacterium kansasii ATCC
12478]
Length=143
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/95 (58%), Positives = 66/95 (70%), Gaps = 1/95 (1%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RT+LFRTAEG KL SA V FE DDH EGWSVI++ RA+ L +D + EA+
Sbjct 44 VVQRRTILFRTAEGTKLVSAAMNNQVLFEVDDHTAVEGWSVIIQGRARSLRSDEEIEEAD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFG-PEP 94
RAQLL W AT K+H VR++P +TGR FRF P P
Sbjct 104 RAQLLTWIATEKKHYVRILPDLVTGRRFRFDRPSP 138
>gi|289571339|ref|ZP_06451566.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289755249|ref|ZP_06514627.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289545093|gb|EFD48741.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289695836|gb|EFD63265.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/55 (99%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAG 55
+VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAG
Sbjct 1 MVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAG 55
>gi|183983476|ref|YP_001851767.1| hypothetical protein MMAR_3493 [Mycobacterium marinum M]
gi|183176802|gb|ACC41912.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=139
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/92 (60%), Positives = 64/92 (70%), Gaps = 0/92 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KL S V FE DDH +EGWSVIV+ RA+ + TD + EAE
Sbjct 44 VVQRRTVLFRTAEGTKLVSTAINHKVLFEVDDHTSSEGWSVIVEGRARSMRTDEEIAEAE 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGP 92
A LL WTAT K H VR++P +TGR F+FGP
Sbjct 104 SAHLLTWTATEKTHYVRILPDAVTGRRFQFGP 135
>gi|296169078|ref|ZP_06850738.1| helix-turn-helix domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896269|gb|EFG75930.1| helix-turn-helix domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=139
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/92 (60%), Positives = 66/92 (72%), Gaps = 1/92 (1%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ +T+LFRTAEG KL S V FE DDHNV+EGWSVIVK A+ L ++ + EAE
Sbjct 44 VVQRQTILFRTAEGTKLVSTAINNRVLFEVDDHNVSEGWSVIVKGTARSLRSNEDLEEAE 103
Query 61 RAQLLPWTATL-KRHCVRVIPWEITGRHFRFG 91
RAQ+LPWTA K H VR++P +TGR FRFG
Sbjct 104 RAQVLPWTAGAEKSHYVRIVPETVTGRRFRFG 135
>gi|118466288|ref|YP_883259.1| pyridoxamine 5'-phosphate oxidase [Mycobacterium avium 104]
gi|118167575|gb|ABK68472.1| pyridoxamine 5'-phosphate oxidase family protein [Mycobacterium
avium 104]
Length=138
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/91 (60%), Positives = 64/91 (71%), Gaps = 0/91 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KL SA V FE DDHNVA W+VI++ A+ L T + EAE
Sbjct 44 VVQRRTVLFRTAEGTKLISAAINNRVLFEVDDHNVAGAWTVIIRGIARSLRTTEEIEEAE 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFG 91
RAQ+LPWT + K H VR++P +TGR FRFG
Sbjct 104 RAQVLPWTRSEKTHYVRIVPESVTGRRFRFG 134
>gi|41409370|ref|NP_962206.1| hypothetical protein MAP3272 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398190|gb|AAS05820.1| hypothetical protein MAP_3272 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=138
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/91 (60%), Positives = 63/91 (70%), Gaps = 0/91 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KL SA V FE DDHNV WSVI++ A+ L T + EAE
Sbjct 44 VVQRRTVLFRTAEGTKLISAAINNRVLFEVDDHNVVGAWSVIIRGIARSLRTPEEIEEAE 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFG 91
RAQ+LPWT + K H VR++P +TGR FRFG
Sbjct 104 RAQVLPWTRSEKTHYVRIVPESVTGRRFRFG 134
>gi|254776536|ref|ZP_05218052.1| pyridoxamine 5'-phosphate oxidase family protein [Mycobacterium
avium subsp. avium ATCC 25291]
Length=151
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/90 (59%), Positives = 63/90 (70%), Gaps = 0/90 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VVQ RTVLFRTAEG KL SA V FE DDHNVA W+VI++ A+ L T + EAE
Sbjct 57 VVQRRTVLFRTAEGTKLISAAINNRVLFEVDDHNVAGAWTVIIRGIARSLRTTEEIEEAE 116
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRF 90
RAQ+LPWT + K H VR++P +TGR FRF
Sbjct 117 RAQVLPWTRSEKTHYVRIVPESVTGRRFRF 146
>gi|340776031|gb|EGR98081.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes SK182B-JCVI]
Length=140
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/97 (50%), Positives = 65/97 (68%), Gaps = 0/97 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VV G++++FRTA G+KL V VAFEAD GWSV+V+ +A+V+T DA + +
Sbjct 44 VVDGQSIVFRTAAGSKLEDIVTNNRVAFEADGWTEETGWSVVVRGKAEVITDDAELALCD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRS 97
+ LLPW T+KR+ VRV +ITGR F FGPEP R+
Sbjct 104 KMPLLPWVPTVKRNYVRVQADQITGRTFAFGPEPKRN 140
>gi|237785994|ref|YP_002906699.1| hypothetical protein ckrop_1418 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758906|gb|ACR18156.1| hypothetical protein ckrop_1418 [Corynebacterium kroppenstedtii
DSM 44385]
Length=161
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/92 (46%), Positives = 62/92 (68%), Gaps = 0/92 (0%)
Query 5 RTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQL 64
++VLFRT+EG+KL S V FE D + ++ SV+++ RA LT+ A + EA++ +L
Sbjct 64 KSVLFRTSEGSKLVSLTVNDKVLFEVDSFDESDATSVVIRGRAHRLTSTAEINEADKLEL 123
Query 65 LPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
PW TLK + VRV+P ++GRHF+ G EPDR
Sbjct 124 KPWLPTLKYNYVRVVPDSVSGRHFKLGDEPDR 155
>gi|172040203|ref|YP_001799917.1| hypothetical protein cur_0523 [Corynebacterium urealyticum DSM
7109]
gi|171851507|emb|CAQ04483.1| hypothetical protein cu0523 [Corynebacterium urealyticum DSM
7109]
Length=140
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/96 (48%), Positives = 60/96 (63%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VV + FRTAEG+KLF+ V FEADDH + WSVIVK RA++L ++EA+
Sbjct 44 VVNEGKIYFRTAEGSKLFTVSINERVLFEADDHTEDKAWSVIVKGRARILQRTDEIQEAD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
L PW TLK + V + P EI+GR F+ G EP+R
Sbjct 104 ELPLKPWLPTLKYNYVEITPEEISGRRFQLGEEPER 139
>gi|213965897|ref|ZP_03394088.1| helix-turn-helix motif-containing domain protein [Corynebacterium
amycolatum SK46]
gi|213951475|gb|EEB62866.1| helix-turn-helix motif-containing domain protein [Corynebacterium
amycolatum SK46]
Length=144
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEAD--DHNVAEGWSVIVKVRAQVLTTDAGVRE 58
VV ++ FRTAEG+KLF+ V FEAD D + + WSVIVK A+VLT+ A +
Sbjct 44 VVHEGSIYFRTAEGSKLFTVSLNHDVLFEADFVDKDAQKAWSVIVKGDAEVLTSRADINA 103
Query 59 AERAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRSQ 98
A+ L PW TLK + VR+ P +++GRHF G EP+R +
Sbjct 104 ADELPLKPWLPTLKYNYVRITPNDVSGRHFHLGEEPNRYE 143
>gi|118473751|ref|YP_890582.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
gi|118175038|gb|ABK75934.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
Length=134
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/89 (54%), Positives = 59/89 (67%), Gaps = 0/89 (0%)
Query 2 VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAER 61
VQ RTVLFRT EG KL +A+ V FEAD H A+GWSVIV+ A++L T + EAE+
Sbjct 42 VQERTVLFRTNEGTKLITAIMSDRVLFEADAHTAADGWSVIVRGTAELLQTAEDIAEAEQ 101
Query 62 AQLLPWTATLKRHCVRVIPWEITGRHFRF 90
LL WT+ KR VR+ P EI+GR F F
Sbjct 102 TGLLLWTSPAKRRYVRITPKEISGRFFTF 130
>gi|313836632|gb|EFS74346.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes HL037PA2]
gi|314928142|gb|EFS91973.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes HL044PA1]
gi|314972140|gb|EFT16237.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes HL037PA3]
gi|328907997|gb|EGG27757.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
humerusii P08]
Length=140
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/94 (49%), Positives = 62/94 (66%), Gaps = 0/94 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VV G++++FRTA G+KL V VAFEAD GWSV+++ +A V+T DA + +
Sbjct 44 VVDGQSIVFRTAAGSKLEDIVTNNRVAFEADGWTEETGWSVVLRGKADVITDDAELALCD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEP 94
+ LLPW T+KR+ VRV +ITGR F FGPEP
Sbjct 104 KMPLLPWVPTVKRNYVRVQADQITGRTFAFGPEP 137
>gi|313829578|gb|EFS67292.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes HL063PA2]
Length=140
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/94 (48%), Positives = 63/94 (68%), Gaps = 0/94 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VV G++++FRTA G+KL V VAFEAD GWSV+++ +A+++T DA + +
Sbjct 44 VVDGQSIVFRTAAGSKLEDIVTNNRVAFEADGWTEEAGWSVVLRGKAEIITDDAELALCD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEP 94
+ LLPW T+KR+ VRV +ITGR F FGPEP
Sbjct 104 KMPLLPWVPTVKRNYVRVEADQITGRTFAFGPEP 137
>gi|289426479|ref|ZP_06428222.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes SK187]
gi|289153207|gb|EFD01925.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes SK187]
Length=140
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/94 (48%), Positives = 63/94 (68%), Gaps = 0/94 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VV G++++FRTA G+KL V VAFEAD GWSV+++ +A+++T DA + +
Sbjct 44 VVDGQSIVFRTAAGSKLEDIVTNNRVAFEADGWTEEAGWSVVLRGKAEIITDDAELALCD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEP 94
+ LLPW T+KR+ VRV +ITGR F FGPEP
Sbjct 104 KMPLLPWVPTVKRNYVRVEADQITGRTFAFGPEP 137
>gi|50842944|ref|YP_056171.1| hypothetical protein PPA1465 [Propionibacterium acnes KPA171202]
gi|282854611|ref|ZP_06263946.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes J139]
gi|289428730|ref|ZP_06430413.1| pyridoxamine 5'-phosphate oxidase family protein [Propionibacterium
acnes J165]
74 more sequence titles
Length=140
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/94 (48%), Positives = 63/94 (68%), Gaps = 0/94 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
VV G++++FRTA G+KL V VAFEAD GWSV+++ +A+++T DA + +
Sbjct 44 VVDGQSIVFRTAAGSKLEDIVTNNRVAFEADGWTEEAGWSVVLRGKAEIITDDAELALCD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEP 94
+ LLPW T+KR+ VRV +ITGR F FGPEP
Sbjct 104 KMPLLPWVPTVKRNYVRVEADQITGRTFAFGPEP 137
>gi|126432985|ref|YP_001068676.1| hypothetical protein Mjls_0372 [Mycobacterium sp. JLS]
gi|126232785|gb|ABN96185.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=135
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/89 (56%), Positives = 57/89 (65%), Gaps = 0/89 (0%)
Query 2 VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAER 61
VQ RTVLFRTAEG KL SA V FEAD H EGWSV+VK A+ + D + +A
Sbjct 45 VQDRTVLFRTAEGTKLTSAAISNQVLFEADAHTATEGWSVVVKGVARTVHGDDELEKAAG 104
Query 62 AQLLPWTATLKRHCVRVIPWEITGRHFRF 90
AQL WTAT K+H VR+ P +TGR F F
Sbjct 105 AQLFSWTATTKQHFVRIRPDRVTGRRFGF 133
>gi|120401649|ref|YP_951478.1| pyridoxamine 5'-phosphate oxidase-like protein [Mycobacterium
vanbaalenii PYR-1]
gi|119954467|gb|ABM11472.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Mycobacterium vanbaalenii PYR-1]
Length=140
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/96 (56%), Positives = 63/96 (66%), Gaps = 0/96 (0%)
Query 2 VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAER 61
VQ RTVLFRTAEG KL ++ V FEAD + +GWSVIVK A+ L T+ + EAE
Sbjct 45 VQNRTVLFRTAEGTKLVASAISKEVLFEADGYEDTQGWSVIVKGTARSLHTEEEIAEAET 104
Query 62 AQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRS 97
A L+PWTAT+K H VR+ P ITGR F FG P S
Sbjct 105 ANLVPWTATVKNHFVRIRPLNITGRRFVFGARPAGS 140
>gi|262201743|ref|YP_003272951.1| pyridoxamine 5'-phosphate oxidase-like FMN--binding protein [Gordonia
bronchialis DSM 43247]
gi|262085090|gb|ACY21058.1| pyridoxamine 5'-phosphate oxidase-related FMN- binding protein
[Gordonia bronchialis DSM 43247]
Length=142
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/95 (51%), Positives = 59/95 (63%), Gaps = 6/95 (6%)
Query 5 RTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQL 64
R ++FRTA+G KL+ A VAFE DDH+ GWSV+VK A+VL + RE E A
Sbjct 46 RRIIFRTAQGTKLYELTANSHVAFETDDHDADGGWSVVVKGTARVLESH---REIEAADT 102
Query 65 LP---WTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
LP W TLK + V + EITGR F FGPEP+R
Sbjct 103 LPLRTWLPTLKYNYVEISADEITGREFTFGPEPER 137
>gi|108797364|ref|YP_637561.1| hypothetical protein Mmcs_0384 [Mycobacterium sp. MCS]
gi|119866448|ref|YP_936400.1| hypothetical protein Mkms_0393 [Mycobacterium sp. KMS]
gi|108767783|gb|ABG06505.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692537|gb|ABL89610.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=135
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/89 (54%), Positives = 56/89 (63%), Gaps = 0/89 (0%)
Query 2 VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAER 61
VQ RTVLFRTA G KL SA V FEAD H EGWSV+VK A+ + D + +A
Sbjct 45 VQDRTVLFRTAAGTKLTSAAISNQVLFEADAHTATEGWSVVVKGVARTVHGDDELEKAAG 104
Query 62 AQLLPWTATLKRHCVRVIPWEITGRHFRF 90
AQL WTAT K+H VR+ P +TGR F F
Sbjct 105 AQLFSWTATTKQHFVRIRPDRVTGRRFGF 133
>gi|297626612|ref|YP_003688375.1| hypothetical protein PFREUD_14500 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922377|emb|CBL56949.1| Hypothetical protein PFREUD_14500 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length=140
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/96 (41%), Positives = 58/96 (61%), Gaps = 0/96 (0%)
Query 2 VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAER 61
+ G +++FR+A G+KL VAFEAD + GWSV+V+ +T + + +
Sbjct 45 LDGESIVFRSAAGSKLEKLALNSHVAFEADGWSEEGGWSVLVRGTGSFITDEDELARVAK 104
Query 62 AQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDRS 97
A LLPW T+K++ VR+ P +TGR F FGPEP +S
Sbjct 105 APLLPWVPTVKKNWVRITPTRVTGRTFLFGPEPSQS 140
>gi|25028986|ref|NP_739040.1| hypothetical protein CE2430 [Corynebacterium efficiens YS-314]
gi|23494273|dbj|BAC19240.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=163
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 54/96 (57%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
V G + FRTAEG KLF+ V FE D+ WSV+V+ A+++ ++E +
Sbjct 67 VTNGENLYFRTAEGNKLFTITLNHDVLFEVDEVRDGVAWSVVVRGDAELVQDFKEIQEVD 126
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
L PW TLK + VR+ P EITGR F+ G EP R
Sbjct 127 ELDLKPWVPTLKYNYVRITPNEITGREFQLGEEPAR 162
>gi|259508050|ref|ZP_05750950.1| helix-turn-helix domain protein [Corynebacterium efficiens YS-314]
gi|259164391|gb|EEW48945.1| helix-turn-helix domain protein [Corynebacterium efficiens YS-314]
Length=140
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 54/96 (57%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
V G + FRTAEG KLF+ V FE D+ WSV+V+ A+++ ++E +
Sbjct 44 VTNGENLYFRTAEGNKLFTITLNHDVLFEVDEVRDGVAWSVVVRGDAELVQDFKEIQEVD 103
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
L PW TLK + VR+ P EITGR F+ G EP R
Sbjct 104 ELDLKPWVPTLKYNYVRITPNEITGREFQLGEEPAR 139
>gi|343926674|ref|ZP_08766172.1| hypothetical protein GOALK_067_00570 [Gordonia alkanivorans NBRC
16433]
gi|343763426|dbj|GAA13098.1| hypothetical protein GOALK_067_00570 [Gordonia alkanivorans NBRC
16433]
Length=140
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/90 (46%), Positives = 52/90 (58%), Gaps = 0/90 (0%)
Query 7 VLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQLLP 66
+ RT EG KL V VAFE D H GWSV+ K A+VLT+ + A++ L P
Sbjct 48 ITLRTGEGTKLSEVVVNNRVAFETDAHTDTGGWSVVAKGTARVLTSFGDIEAADKLPLRP 107
Query 67 WTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
W AT+K + V + EIT R F FGPEP+R
Sbjct 108 WIATVKYNYVEIAVEEITARRFEFGPEPER 137
>gi|19553734|ref|NP_601736.1| hypothetical protein NCgl2448 [Corynebacterium glutamicum ATCC
13032]
gi|62391375|ref|YP_226777.1| hypothetical protein cg2794 [Corynebacterium glutamicum ATCC
13032]
gi|41326716|emb|CAF21198.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
13032]
Length=137
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 56/96 (59%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
+V + RTAEG KLFS V FEAD+ + WSV+V+ A+++ + A+
Sbjct 41 IVDKGAIYIRTAEGNKLFSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVRKLDEIAYAD 100
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
+L PW TLK + VR++P EITGR F G EP+R
Sbjct 101 TLELKPWIPTLKYNYVRIVPNEITGREFTLGEEPER 136
>gi|344043829|gb|EGV39516.1| hypothetical protein CgS9114_12642 [Corynebacterium glutamicum
S9114]
Length=137
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 56/96 (59%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
+V + RTAEG KLFS V FEAD+ + WSV+V+ A+++ + A+
Sbjct 41 IVDKGAIYIRTAEGNKLFSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVHKLDEIAYAD 100
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
+L PW TLK + VR++P EITGR F G EP+R
Sbjct 101 TLELKPWIPTLKYNYVRIVPNEITGREFTLGEEPER 136
>gi|145296534|ref|YP_001139355.1| hypothetical protein cgR_2443 [Corynebacterium glutamicum R]
gi|140846454|dbj|BAF55453.1| hypothetical protein [Corynebacterium glutamicum R]
Length=137
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 56/96 (59%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
+V + RTAEG KLFS V FEAD+ + WSV+V+ A+++ + A+
Sbjct 41 IVDKGAIYIRTAEGNKLFSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVHKLDEIAYAD 100
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
+L PW TLK + VR++P EITGR F G EP+R
Sbjct 101 TLELKPWIPTLKYNYVRIVPNEITGREFTLGEEPER 136
>gi|220702557|pdb|3FKH|A Chain A, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 2.51 A Resolution
gi|220702558|pdb|3FKH|B Chain B, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 2.51 A Resolution
gi|220702559|pdb|3FKH|C Chain C, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 2.51 A Resolution
gi|220702560|pdb|3FKH|D Chain D, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 2.51 A Resolution
gi|220702561|pdb|3FKH|E Chain E, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 2.51 A Resolution
gi|220702562|pdb|3FKH|F Chain F, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 2.51 A Resolution
Length=138
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/96 (42%), Positives = 56/96 (59%), Gaps = 0/96 (0%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAE 60
+V + RTAEG KLFS V FEAD+ + WSV+V+ A+++ + A+
Sbjct 42 IVDKGAIYIRTAEGNKLFSXNLNHDVLFEADEVKDGKAWSVVVRATAEIVRKLDEIAYAD 101
Query 61 RAQLLPWTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
+L PW TLK + VR++P EITGR F G EP+R
Sbjct 102 TLELKPWIPTLKYNYVRIVPNEITGREFTLGEEPER 137
>gi|183448386|pdb|3CP3|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
Dip1874 From Corynebacterium Diphtheriae
Length=148
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/90 (48%), Positives = 53/90 (59%), Gaps = 0/90 (0%)
Query 7 VLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQLLP 66
V FRTAEG KLFS V FE D + AEGWSV++K A V+ R A+ L P
Sbjct 58 VYFRTAEGTKLFSVNLNSDVLFEVDRFDDAEGWSVVLKGNAYVVRDTEEARHADTLGLKP 117
Query 67 WTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
W TLK + VR+ E++GR F FG EP+R
Sbjct 118 WLPTLKYNFVRIDVREVSGRAFVFGEEPER 147
>gi|38234444|ref|NP_940211.1| hypothetical protein DIP1874 [Corynebacterium diphtheriae NCTC
13129]
gi|38200707|emb|CAE50403.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=145
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/90 (48%), Positives = 53/90 (59%), Gaps = 0/90 (0%)
Query 7 VLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQLLP 66
V FRTAEG KLFS V FE D + AEGWSV++K A V+ R A+ L P
Sbjct 55 VYFRTAEGTKLFSVNLNSDVLFEVDRFDDAEGWSVVLKGNAYVVRDTEEARHADTLGLKP 114
Query 67 WTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
W TLK + VR+ E++GR F FG EP+R
Sbjct 115 WLPTLKYNFVRIDVREVSGRAFVFGEEPER 144
>gi|21325308|dbj|BAB99929.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length=96
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/90 (44%), Positives = 54/90 (60%), Gaps = 0/90 (0%)
Query 7 VLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQLLP 66
+ RTAEG KLFS V FEAD+ + WSV+V+ A+++ + A+ +L P
Sbjct 6 IYIRTAEGNKLFSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVRKLDEIAYADTLELKP 65
Query 67 WTATLKRHCVRVIPWEITGRHFRFGPEPDR 96
W TLK + VR++P EITGR F G EP+R
Sbjct 66 WIPTLKYNYVRIVPNEITGREFTLGEEPER 95
>gi|336459493|gb|EGO38432.1| hypothetical protein MAPs_02930 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=73
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (57%), Positives = 46/66 (70%), Gaps = 0/66 (0%)
Query 26 VAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAERAQLLPWTATLKRHCVRVIPWEITG 85
V FE DDHNV WSVI++ A+ L T + EAERAQ+LPWT + K H VR++P +TG
Sbjct 4 VLFEVDDHNVVGAWSVIIRGIARSLRTPEEIEEAERAQVLPWTRSEKTHYVRIVPESVTG 63
Query 86 RHFRFG 91
R FRFG
Sbjct 64 RRFRFG 69
>gi|145220865|ref|YP_001131543.1| pyridoxamine 5'-phosphate oxidase-like protein [Mycobacterium
gilvum PYR-GCK]
gi|145213351|gb|ABP42755.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
[Mycobacterium gilvum PYR-GCK]
Length=140
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/90 (54%), Positives = 58/90 (65%), Gaps = 1/90 (1%)
Query 2 VQGRTVLFRTAEGAKLFSAVAKCAVAFEADDHNVAEGWSVIVKVRAQVLTTDAGVREAER 61
VQ RTVLFRTAEG KL ++ V FEAD ++ EGWSVIV+ A+ L T+ + EAE
Sbjct 45 VQNRTVLFRTAEGTKLVASAVSREVLFEADGYSGGEGWSVIVRGPARSLHTNEEIAEAEE 104
Query 62 AQLLPWT-ATLKRHCVRVIPWEITGRHFRF 90
A LLPWT K H VR+ P +TGR F F
Sbjct 105 AALLPWTNPDDKSHYVRIRPVNVTGRRFFF 134
>gi|340795592|ref|YP_004761055.1| hypothetical protein CVAR_2641 [Corynebacterium variabile DSM
44702]
gi|340535502|gb|AEK37982.1| hypothetical protein CVAR_2641 [Corynebacterium variabile DSM
44702]
Length=147
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/103 (42%), Positives = 56/103 (55%), Gaps = 7/103 (6%)
Query 1 VVQGRTVLFRTAEGAKLFSAVAKCAVAFEADD-----HNVAEGWSVIVKVRAQVLTTDAG 55
+V +LFRTAEG KLFS V FE D+ + E WSVIVK A++L
Sbjct 44 IVHDGKILFRTAEGTKLFSLNLNDDVLFEVDNVEQTSEDTGEAWSVIVKGTARILKDTTE 103
Query 56 VREAERAQLLPWTATLKRHCVRVIPWE--ITGRHFRFGPEPDR 96
+ A+ A L PW TLK + V + P E ++GR F G EP+R
Sbjct 104 IHAADEAPLKPWLPTLKYNYVVITPNEDGLSGRKFNLGEEPER 146
Lambda K H
0.323 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129022162688
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40