BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3131

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842704|ref|NP_337741.1|  hypothetical protein MT3217 [Mycoba...   665    0.0   
gi|31794307|ref|NP_856800.1|  hypothetical protein Mb3155 [Mycoba...   664    0.0   
gi|289571341|ref|ZP_06451568.1|  conserved hypothetical protein [...   525    5e-147
gi|183981533|ref|YP_001849824.1|  hypothetical protein MMAR_1518 ...   506    1e-141
gi|240168622|ref|ZP_04747281.1|  hypothetical protein MkanA1_0487...   502    4e-140
gi|118617912|ref|YP_906244.1|  hypothetical protein MUL_2421 [Myc...   501    9e-140
gi|240171846|ref|ZP_04750505.1|  hypothetical protein MkanA1_2120...   453    2e-125
gi|183983485|ref|YP_001851776.1|  hypothetical protein MMAR_3502 ...   437    9e-121
gi|296169061|ref|ZP_06850721.1|  conserved hypothetical protein [...   434    9e-120
gi|336457360|gb|EGO36371.1|  nitroreductase family protein [Mycob...   426    4e-117
gi|118463529|ref|YP_881694.1|  hypothetical protein MAV_2502 [Myc...   424    1e-116
gi|254775159|ref|ZP_05216675.1|  hypothetical protein MaviaA2_108...   423    2e-116
gi|41407844|ref|NP_960680.1|  hypothetical protein MAP1746c [Myco...   422    3e-116
gi|333991620|ref|YP_004524234.1|  hypothetical protein JDM601_298...   419    3e-115
gi|120403535|ref|YP_953364.1|  hypothetical protein Mvan_2547 [My...   416    3e-114
gi|41409371|ref|NP_962207.1|  hypothetical protein MAP3273c [Myco...   415    4e-114
gi|342861120|ref|ZP_08717769.1|  hypothetical protein MCOL_19652 ...   412    5e-113
gi|118463329|ref|YP_883260.1|  hypothetical protein MAV_4111 [Myc...   410    2e-112
gi|118471183|ref|YP_888244.1|  hypothetical protein MSMEG_3955 [M...   406    2e-111
gi|254822202|ref|ZP_05227203.1|  hypothetical protein MintA_19874...   400    2e-109
gi|108798051|ref|YP_638248.1|  hypothetical protein Mmcs_1078 [My...   385    5e-105
gi|315444763|ref|YP_004077642.1|  nitroreductase family protein [...   384    1e-104
gi|145224430|ref|YP_001135108.1|  hypothetical protein Mflv_3848 ...   382    4e-104
gi|296170565|ref|ZP_06852149.1|  conserved hypothetical protein [...   379    4e-103
gi|126433739|ref|YP_001069430.1|  hypothetical protein Mjls_1136 ...   377    1e-102
gi|108798079|ref|YP_638276.1|  hypothetical protein Mmcs_1107 [My...   377    1e-102
gi|108801088|ref|YP_641285.1|  hypothetical protein Mmcs_4124 [My...   350    1e-94 
gi|289751807|ref|ZP_06511185.1|  LOW QUALITY PROTEIN: conserved h...   338    8e-91 
gi|333919787|ref|YP_004493368.1|  hypothetical protein AS9A_2119 ...   313    2e-83 
gi|300787328|ref|YP_003767619.1|  hypothetical protein AMED_5457 ...   311    7e-83 
gi|54024865|ref|YP_119107.1|  hypothetical protein nfa28960 [Noca...   272    5e-71 
gi|256376051|ref|YP_003099711.1|  nitroreductase [Actinosynnema m...   243    3e-62 
gi|256376540|ref|YP_003100200.1|  nitroreductase [Actinosynnema m...   224    1e-56 
gi|331694589|ref|YP_004330828.1|  nitroreductase [Pseudonocardia ...   223    2e-56 
gi|317507618|ref|ZP_07965331.1|  hypothetical protein HMPREF9336_...   222    8e-56 
gi|331696254|ref|YP_004332493.1|  nitroreductase [Pseudonocardia ...   200    3e-49 
gi|326332436|ref|ZP_08198712.1|  hypothetical protein NBCG_03882 ...   188    9e-46 
gi|120401196|ref|YP_951025.1|  hypothetical protein Mvan_0168 [My...   184    2e-44 
gi|134099020|ref|YP_001104681.1|  hypothetical protein SACE_2458 ...   181    1e-43 
gi|302867182|ref|YP_003835819.1|  nitroreductase [Micromonospora ...   180    2e-43 
gi|315506409|ref|YP_004085296.1|  nitroreductase [Micromonospora ...   180    3e-43 
gi|119868659|ref|YP_938611.1|  hypothetical protein Mkms_2624 [My...   178    1e-42 
gi|108799546|ref|YP_639743.1|  hypothetical protein Mmcs_2579 [My...   178    1e-42 
gi|325001930|ref|ZP_08123042.1|  hypothetical protein PseP1_24351...   177    1e-42 
gi|145594126|ref|YP_001158423.1|  hypothetical protein Strop_1579...   177    3e-42 
gi|119715233|ref|YP_922198.1|  hypothetical protein Noca_0990 [No...   173    3e-41 
gi|333921514|ref|YP_004495095.1|  hypothetical protein AS9A_3857 ...   173    4e-41 
gi|159037164|ref|YP_001536417.1|  hypothetical protein Sare_1530 ...   172    1e-40 
gi|111017049|ref|YP_700021.1|  hypothetical protein RHA1_ro00027 ...   167    3e-39 
gi|111017053|ref|YP_700025.1|  hypothetical protein RHA1_ro00031 ...   163    4e-38 


>gi|15842704|ref|NP_337741.1| hypothetical protein MT3217 [Mycobacterium tuberculosis CDC1551]
 gi|345462018|ref|NP_217647.2| hypothetical protein Rv3131 [Mycobacterium tuberculosis H37Rv]
 gi|13883025|gb|AAK47555.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=344

 Score =  665 bits (1716),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 332/332 (100%), Positives = 332/332 (100%), Gaps = 0/332 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI
Sbjct  13   MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  72

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR
Sbjct  73   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  132

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL
Sbjct  133  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  192

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD
Sbjct  193  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  252

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG
Sbjct  253  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  312

Query  301  WAPINADPLPPTPRRELSQVVEWPEELLRQRC  332
            WAPINADPLPPTPRRELSQVVEWPEELLRQRC
Sbjct  313  WAPINADPLPPTPRRELSQVVEWPEELLRQRC  344


>gi|31794307|ref|NP_856800.1| hypothetical protein Mb3155 [Mycobacterium bovis AF2122/97]
 gi|121639014|ref|YP_979238.1| hypothetical protein BCG_3154 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148662985|ref|YP_001284508.1| hypothetical protein MRA_3163 [Mycobacterium tuberculosis H37Ra]
 71 more sequence titles
 Length=332

 Score =  664 bits (1713),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 332/332 (100%), Positives = 332/332 (100%), Gaps = 0/332 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI
Sbjct  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR
Sbjct  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL
Sbjct  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD
Sbjct  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG
Sbjct  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEWPEELLRQRC  332
            WAPINADPLPPTPRRELSQVVEWPEELLRQRC
Sbjct  301  WAPINADPLPPTPRRELSQVVEWPEELLRQRC  332


>gi|289571341|ref|ZP_06451568.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545095|gb|EFD48743.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=333

 Score =  525 bits (1351),  Expect = 5e-147, Method: Compositional matrix adjust.
 Identities = 264/268 (99%), Positives = 264/268 (99%), Gaps = 0/268 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI
Sbjct  13   MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  72

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR
Sbjct  73   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  132

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL
Sbjct  133  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  192

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD
Sbjct  193  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  252

Query  241  DRLARLRAGEAASIVLLTATAMGLACCP  268
            DRLARLRAGEAASIVLLTATAMG    P
Sbjct  253  DRLARLRAGEAASIVLLTATAMGAGVLP  280


>gi|183981533|ref|YP_001849824.1| hypothetical protein MMAR_1518 [Mycobacterium marinum M]
 gi|183174859|gb|ACC39969.1| conserved protein [Mycobacterium marinum M]
Length=332

 Score =  506 bits (1304),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 250/331 (76%), Positives = 275/331 (84%), Gaps = 0/331 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN  FPD  T+RTVLTLA RAPSIHNTQPWRW+V   SLELFS PDMQL STDPDGR+LI
Sbjct  1    MNAQFPDVGTLRTVLTLATRAPSIHNTQPWRWQVTSRSLELFSEPDMQLHSTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCGVALHHCVVALAS+GWQA V R PDP +  HLA++ +Q   PDQ D+ALAAAIPRRR
Sbjct  61   ISCGVALHHCVVALASMGWQATVTRIPDPDNSRHLASLELQAKPPDQGDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRRAYS WPV  GDIA MAAR AR  V LRQV ALD+M+ +VAQAV DH T++EY+REL
Sbjct  121  TDRRAYSSWPVAAGDIAQMAARVARCDVALRQVEALDKMREVVAQAVWDHATNDEYMREL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRYG+VAGVPARN PPSD  APIPGRLFAGPGL+QPS V PA D A ILALGTE D
Sbjct  181  TTWSGRYGAVAGVPARNTPPSDQDAPIPGRLFAGPGLAQPSGVSPAADSAVILALGTEED  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DR +RLRAGEA S VLLTATAMGLA CPITEPLE+ KTR A+R +VFG   YPQMLLRVG
Sbjct  241  DRASRLRAGEATSAVLLTATAMGLASCPITEPLEVHKTRQAIRKDVFGGSAYPQMLLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEWPEELLRQR  331
            WAPINADPLP TPRR LS+VVEWPE+LL +R
Sbjct  301  WAPINADPLPATPRRNLSRVVEWPEQLLDER  331


>gi|240168622|ref|ZP_04747281.1| hypothetical protein MkanA1_04875 [Mycobacterium kansasii ATCC 
12478]
Length=332

 Score =  502 bits (1292),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 253/331 (77%), Positives = 275/331 (84%), Gaps = 0/331 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN  FPDA  +R VLTLA RAPS+HNTQPWRWRV   SL+LFS PDMQL STDPDGR+LI
Sbjct  1    MNAQFPDAGALRAVLTLATRAPSVHNTQPWRWRVGAPSLDLFSEPDMQLHSTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCGVALHHCVVALAS+GW+AKVNR PDP +  HLA I V+    D AD+ALAAAIPRRR
Sbjct  61   ISCGVALHHCVVALASMGWRAKVNRLPDPDNPRHLAAIEVRAQDADHADIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPV GGD+A MAARAAR GVMLRQV ALD+M++IVAQAV  H  DE Y+REL
Sbjct  121  TDRRVYSSWPVAGGDVAQMAARAARCGVMLRQVDALDKMRSIVAQAVWRHAGDEGYIREL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRYG VAGVPARN PPSD SAPIPGRLFA P L+QPS V PADDG  ILALGT+ D
Sbjct  181  TTWSGRYGGVAGVPARNTPPSDRSAPIPGRLFAAPALAQPSGVSPADDGGVILALGTDQD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DR++RLRAGEA S VLLTATAMGLA CPITEPLEI  TRDAVRA+VFG  GYPQMLLRVG
Sbjct  241  DRVSRLRAGEATSAVLLTATAMGLASCPITEPLEIQSTRDAVRADVFGDSGYPQMLLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEWPEELLRQR  331
            WAPINADPLP TPRR LSQVV+ P ELL +R
Sbjct  301  WAPINADPLPATPRRSLSQVVDGPRELLEER  331


>gi|118617912|ref|YP_906244.1| hypothetical protein MUL_2421 [Mycobacterium ulcerans Agy99]
 gi|118570022|gb|ABL04773.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=348

 Score =  501 bits (1289),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 248/331 (75%), Positives = 273/331 (83%), Gaps = 0/331 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN  FPD  T+RTVLTLA RAPSIHNTQPWRW+V   SLELF  PDMQL STDPDGR+LI
Sbjct  17   MNAQFPDVGTLRTVLTLATRAPSIHNTQPWRWQVTSRSLELFPEPDMQLHSTDPDGRDLI  76

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCGVALHHCVVALAS+GWQA V R PDP +  HLA++ +Q   PDQ D+ALAAAIPRRR
Sbjct  77   ISCGVALHHCVVALASMGWQATVTRIPDPDNSRHLASLELQAKPPDQGDIALAAAIPRRR  136

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TD RAYS WPV  GDIA MAAR AR  V LRQV ALD+M+ +VAQAV DH T++EY+REL
Sbjct  137  TDWRAYSSWPVAAGDIAQMAARVARCDVALRQVEALDKMREVVAQAVWDHATNDEYMREL  196

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRYG+VAGVPARN PPSD  APIPGRLFAGPGL+QPS V PA D A ILALGTE D
Sbjct  197  TTWSGRYGAVAGVPARNTPPSDQDAPIPGRLFAGPGLAQPSGVSPAADSAVILALGTEED  256

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DR +RLRAGEA S VLLTATAMGLA CPITEPLE+ KTR A+R +VFG   YPQMLLRVG
Sbjct  257  DRASRLRAGEATSAVLLTATAMGLASCPITEPLEVHKTRQAIRKDVFGGSAYPQMLLRVG  316

Query  301  WAPINADPLPPTPRRELSQVVEWPEELLRQR  331
            WAPINADPLP TPRR LS+VVEWPE+LL +R
Sbjct  317  WAPINADPLPATPRRNLSRVVEWPEQLLDER  347


>gi|240171846|ref|ZP_04750505.1| hypothetical protein MkanA1_21200 [Mycobacterium kansasii ATCC 
12478]
Length=335

 Score =  453 bits (1165),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 224/323 (70%), Positives = 259/323 (81%), Gaps = 0/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M  HFPDA TVRTVLTLA RAPS+HNTQPWRWRV   SL L++   +QL +TDP+GR+LI
Sbjct  3    MTAHFPDAGTVRTVLTLASRAPSVHNTQPWRWRVGDASLHLYADTSLQLPNTDPEGRDLI  62

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG AL+HC++ALA+ GWQAKV R P+P D  HLA+I V     DQ D+ LAAAIPRRR
Sbjct  63   LSCGAALNHCIIALAATGWQAKVCRLPNPADPSHLASIEVSRQNADQLDIMLAAAIPRRR  122

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP  DIALMAARAAR GV + QV A+D++ A+VA++V DH +D +YL EL
Sbjct  123  TDRRHYSFWPVPVSDIALMAARAARNGVTVHQVDAMDKLNAVVAKSVWDHASDADYLAEL  182

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGR+ S  GVPARN P  DP+A IP R FAGP L+ P DV PADD A +LALGT TD
Sbjct  183  TAWSGRHASAVGVPARNTPIPDPAAAIPSRRFAGPTLAMPPDVSPADDNAVMLALGTRTD  242

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLA+LRAGEA S+VLLTATAMGLA CP+TEPLEIA+TR AVRA+VFG   YPQMLLRVG
Sbjct  243  DRLAQLRAGEATSVVLLTATAMGLASCPVTEPLEIAETRAAVRADVFGDSQYPQMLLRVG  302

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAPINADPLP TPRR+LS++VEW
Sbjct  303  WAPINADPLPSTPRRDLSEIVEW  325


>gi|183983485|ref|YP_001851776.1| hypothetical protein MMAR_3502 [Mycobacterium marinum M]
 gi|183176811|gb|ACC41921.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=333

 Score =  437 bits (1125),  Expect = 9e-121, Method: Compositional matrix adjust.
 Identities = 223/332 (68%), Positives = 266/332 (81%), Gaps = 2/332 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN HFPDA TVRTVLTLA RAPS+HNTQPWRW+V  T+L L++   +QL +TDP+GR+LI
Sbjct  1    MNAHFPDAGTVRTVLTLASRAPSVHNTQPWRWQVGATTLHLYADTSLQLPNTDPEGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
             SCG AL+HCV+ALA++GW AKV R P+P D  HLA + V    PDQ ++ LAAAIPRRR
Sbjct  61   SSCGAALNHCVIALAAVGWHAKVARLPNPADPTHLAALEVSRHTPDQLNITLAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP  D+ALMAARAAR GV LRQV A D++ AIVA++V DH  D+EYL EL
Sbjct  121  TDRRHYSFWPVPVSDVALMAARAARCGVSLRQVDATDKLNAIVAKSVWDHAADDEYLAEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGR+ S +GVPARN P SDP+AP+P RLFAG  L+ P+D  PADD A +LALGT TD
Sbjct  181  NAWSGRHASASGVPARNTPVSDPAAPLPSRLFAGSTLAMPADAAPADDNAVMLALGTRTD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLA+LRAGEA S+VLLTATAMGLA CP+TEPLEIA+TR++VR +VFG   YPQMLLRVG
Sbjct  241  DRLAQLRAGEATSVVLLTATAMGLASCPVTEPLEIAETRESVRTDVFGNNDYPQMLLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEWPEELLRQRC  332
            WAPINADPLP TPRR L+++VEW  +  R++C
Sbjct  301  WAPINADPLPSTPRRPLAEIVEWMSD--REQC  330


>gi|296169061|ref|ZP_06850721.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896252|gb|EFG75913.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=332

 Score =  434 bits (1116),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 218/323 (68%), Positives = 251/323 (78%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNT FPDA TVRTVL+LA RAPS+HN+QPWRWRV   SL L++    QL + DPDGR+L+
Sbjct  1    MNTRFPDAGTVRTVLSLASRAPSVHNSQPWRWRVDAASLHLYADDSRQLPNIDPDGRDLM  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVVALA++GW +KV R P+P D  HLA I + P   D  D+ALAAAIPRRR
Sbjct  61   LSCGAALHHCVVALAAVGWLSKVTRLPNPADPSHLAAIELSPHRADTVDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GD+ALMAARAAR GV L QV  LD ++ IVA++V DH+ +E+YL EL
Sbjct  121  TDRRYYSSWPVPVGDVALMAARAARSGVTLCQVEDLDNLRKIVAKSVRDHL-NEDYLAEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRY SVAGVPARN P  DP+A IPGR FAGP L  P D   ADD A +LALGT  D
Sbjct  180  TAWSGRYASVAGVPARNTPAPDPTAKIPGRYFAGPVLPMPPDSSSADDNAVVLALGTRND  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLA+LRAGEA S+VLLTAT++GL  CP+TEPLE   TR AV+A++FG   YPQMLLRVG
Sbjct  240  DRLAQLRAGEATSVVLLTATSLGLVSCPVTEPLETPGTRAAVQADIFGDSNYPQMLLRVG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAPINADPLP TPRREL+  VEW
Sbjct  300  WAPINADPLPATPRRELADFVEW  322


>gi|336457360|gb|EGO36371.1| nitroreductase family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=332

 Score =  426 bits (1094),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 215/323 (67%), Positives = 245/323 (76%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M   FPD  T+RTVL LA RAPS+HNTQPWRW V   SL L++    QL +TDPDGR+LI
Sbjct  1    MTNRFPDEGTIRTVLALASRAPSVHNTQPWRWLVGQESLHLYADGGRQLPNTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVV  A++GWQA+V R P+P D  HLA I +     D  D+ALAAAIPRRR
Sbjct  61   LSCGAALHHCVVGFAAVGWQARVTRLPNPADPDHLAAIELSGGTADPVDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GDIALMAARAAR GV L QV   D++  IV Q+V DH+ + +YL EL
Sbjct  121  TDRRHYSSWPVPVGDIALMAARAARNGVTLCQVEDADKLHEIVKQSVWDHM-NRDYLVEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY +VAGVPARN P SDP A IPGRLFAGP L+ PS    A+D + +LALGT  D
Sbjct  180  AAWSGRYAAVAGVPARNTPKSDPGAKIPGRLFAGPMLAMPSGSSAAEDNSVLLALGTRGD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEA S+VLLTAT+MGLA CP+TEPLE+A TR+AVRAE+FG   YPQMLLR+G
Sbjct  240  DRLARLRAGEATSMVLLTATSMGLASCPVTEPLEVADTREAVRAEIFGGSNYPQMLLRIG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            W PINADPLP TPRREL   VEW
Sbjct  300  WPPINADPLPATPRRELRDFVEW  322


>gi|118463529|ref|YP_881694.1| hypothetical protein MAV_2502 [Mycobacterium avium 104]
 gi|118164816|gb|ABK65713.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=332

 Score =  424 bits (1089),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 214/323 (67%), Positives = 244/323 (76%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M   FPD  T+RTVL LA RAPS+HNTQPWRW V   SL L++    QL +TDPDGR+LI
Sbjct  1    MTNRFPDEGTIRTVLALASRAPSVHNTQPWRWLVGQESLHLYADGGRQLPNTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVV  A++GWQA+V R P+P D  HLA I +     D  D+ALAAAIPRRR
Sbjct  61   LSCGAALHHCVVGFAAVGWQARVTRLPNPADPDHLAAIELSGGTADPVDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GDIALMAARAAR GV L QV   D++  IV Q+V DH+ + +YL EL
Sbjct  121  TDRRHYSSWPVPVGDIALMAARAARNGVTLCQVEDADKLHEIVKQSVWDHM-NRDYLVEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY +VAGVPARN P SDP A IPGRLFAGP L+ PS    A+D + +LALGT  D
Sbjct  180  AAWSGRYAAVAGVPARNTPKSDPGAKIPGRLFAGPMLAMPSGSSAAEDNSVLLALGTRGD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEA S+VLLTAT+MGLA CP+TEPLE+A TR+AVR E+FG   YPQMLLR+G
Sbjct  240  DRLARLRAGEATSMVLLTATSMGLASCPVTEPLEVADTREAVRTEIFGGSNYPQMLLRIG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            W PINADPLP TPRREL   VEW
Sbjct  300  WPPINADPLPATPRRELCDFVEW  322


>gi|254775159|ref|ZP_05216675.1| hypothetical protein MaviaA2_10876 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=332

 Score =  423 bits (1087),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 214/323 (67%), Positives = 243/323 (76%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M   FPD  T+RTVL LA RAPS+HNTQPWRW V   SL L++    QL +TDPDGR+LI
Sbjct  1    MTNRFPDEGTIRTVLALASRAPSVHNTQPWRWLVGQESLHLYADGGRQLPNTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVV  A++GWQA+V R P+P D  HLA I +     D  D+ALAAAIPRRR
Sbjct  61   LSCGAALHHCVVGFAAVGWQARVTRLPNPADPDHLAAIELSGGTADPVDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GDIALMAARAAR GV L QV   D++  IV Q+V DH+ + +YL EL
Sbjct  121  TDRRHYSSWPVPVGDIALMAARAARNGVTLCQVEDADKLHEIVKQSVWDHM-NRDYLVEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY +VAGVPARN P SDP A IPGRLFAGP L+ PS    A+D + +LALGT  D
Sbjct  180  AAWSGRYAAVAGVPARNTPKSDPGAKIPGRLFAGPMLAMPSGSSAAEDNSVLLALGTRGD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEA S VLLTAT+MGLA CP+TEPLE+A TR+AVR E+FG   YPQMLLR+G
Sbjct  240  DRLARLRAGEATSTVLLTATSMGLASCPVTEPLEVADTREAVRTEIFGGSNYPQMLLRIG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            W PINADPLP TPRREL   VEW
Sbjct  300  WPPINADPLPATPRRELCDFVEW  322


>gi|41407844|ref|NP_960680.1| hypothetical protein MAP1746c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396198|gb|AAS04063.1| hypothetical protein MAP_1746c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=342

 Score =  422 bits (1085),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 214/323 (67%), Positives = 244/323 (76%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M   FPD  T+RTVL LA RAPS+HNTQPWRW V   SL L++    QL +TDPDGR+LI
Sbjct  11   MTNRFPDEGTIRTVLALASRAPSVHNTQPWRWLVGQESLHLYADGGRQLPNTDPDGRDLI  70

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVV  A++GWQA+V R P+P D  HLA I +     D  D+ALAAAIPRRR
Sbjct  71   LSCGAALHHCVVGFAAVGWQARVTRLPNPADPDHLAAIELSGGTADPVDIALAAAIPRRR  130

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GDIALMAARAAR  V L QV   D++  IV Q+V DH+ + +YL EL
Sbjct  131  TDRRHYSSWPVPVGDIALMAARAARNRVTLCQVEDADKLHEIVKQSVWDHM-NRDYLVEL  189

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY +VAGVPARN P SDP A IPGRLFAGP L+ PS    A+D + +LALGT  D
Sbjct  190  AAWSGRYAAVAGVPARNTPKSDPGAKIPGRLFAGPMLAMPSGSSAAEDNSVLLALGTRGD  249

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEA S+VLLTAT+MGLA CP+TEPLE+A TR+AVRAE+FG   YPQMLLR+G
Sbjct  250  DRLARLRAGEATSMVLLTATSMGLASCPVTEPLEVADTREAVRAEIFGGSNYPQMLLRIG  309

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            W PINADPLP TPRREL   VEW
Sbjct  310  WPPINADPLPATPRRELRDFVEW  332


>gi|333991620|ref|YP_004524234.1| hypothetical protein JDM601_2980 [Mycobacterium sp. JDM601]
 gi|333487588|gb|AEF36980.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=362

 Score =  419 bits (1077),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 220/327 (68%), Positives = 251/327 (77%), Gaps = 12/327 (3%)

Query  9    ETVRTVLTLAVRAPSIHNTQPWRWRVCPTS----LELFSRPDMQLRSTDPDGRELILSCG  64
            ETVRT L LA RAPS+HN+QPWRW+V   +    LELF+ PD+ LRS DPDGR LILSCG
Sbjct  16   ETVRTALQLAARAPSVHNSQPWRWKVQLATQQPRLELFANPDLHLRSVDPDGRGLILSCG  75

Query  65   VALHHCVVALASLGWQAKVNRFPDPKDRCHLATI-------GVQP-LVPDQADVALAAAI  116
             ALHHCVVALA+LGW+ +V+R PDP    HLA+I       G  P  VP+Q +V+LAAAI
Sbjct  76   AALHHCVVALAALGWRCRVHRLPDPAHPDHLASIELFGPVPGRLPEQVPEQVNVSLAAAI  135

Query  117  PRRRTDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEY  176
            PRRRTDRR +S WPV   DIALM ARAAR GVMLR++ ALDR+  +VAQAV  H TD +Y
Sbjct  136  PRRRTDRRYFSGWPVAAADIALMGARAARAGVMLRRIDALDRLNTVVAQAVFAHRTDYDY  195

Query  177  LRELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALG  236
            L EL  WSGRYGSVAGVPAR+ P     AP+PGRLFA P L+QP    PA+D A +LALG
Sbjct  196  LAELARWSGRYGSVAGVPARSVPAPSTGAPLPGRLFADPLLAQPPGAGPAEDRAVMLALG  255

Query  237  TETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQML  296
            TE DDRLA+LRAGEA S+VLLTATA+GLA CP+TEPLEIA+TR AVR +VFG  GYPQML
Sbjct  256  TEHDDRLAQLRAGEATSVVLLTATALGLASCPVTEPLEIAETRAAVRRDVFGTSGYPQML  315

Query  297  LRVGWAPINADPLPPTPRRELSQVVEW  323
            LRVGWAPINADPLP TPRR L   VEW
Sbjct  316  LRVGWAPINADPLPATPRRFLDDTVEW  342


>gi|120403535|ref|YP_953364.1| hypothetical protein Mvan_2547 [Mycobacterium vanbaalenii PYR-1]
 gi|119956353|gb|ABM13358.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=330

 Score =  416 bits (1068),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 208/321 (65%), Positives = 248/321 (78%), Gaps = 0/321 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M T+FPD+ T+R+ L+LA RAPS+HN+QPW+WRV   SL LF+ PD+ L   DPD R+ +
Sbjct  1    MTTNFPDSVTLRSALSLANRAPSVHNSQPWQWRVGDHSLHLFANPDLLLPHIDPDARDFM  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG AL+HCVVALA+LGWQ+KV+RFP+P D  H+A I V      + D+ LAAAIPRRR
Sbjct  61   LSCGTALNHCVVALAALGWQSKVHRFPNPADPNHVAAIQVHRYPAAELDITLAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GDIALM ARAAR GVMLR+V  LD +K +V +A   H +D+ YL EL
Sbjct  121  TDRRHYSPWPVPRGDIALMGARAARAGVMLRRVDDLDALKRLVNEAAFQHQSDQGYLAEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY S AGVPARN P  D + PIP R FAG  L Q  +  PADD AA+LALGT  D
Sbjct  181  ATWSGRYASTAGVPARNVPDGDGTGPIPLRAFAGGVLPQTPNTEPADDNAAVLALGTVED  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRL+ LRAGEA SIVLLTATA+GLACCPITEPLEIA TR+AVR +VFG  G+PQMLLRVG
Sbjct  241  DRLSWLRAGEATSIVLLTATALGLACCPITEPLEIADTREAVRRDVFGTDGHPQMLLRVG  300

Query  301  WAPINADPLPPTPRRELSQVV  321
            WAP+NADPLP TPRR++++V+
Sbjct  301  WAPVNADPLPATPRRDVTEVI  321


>gi|41409371|ref|NP_962207.1| hypothetical protein MAP3273c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398191|gb|AAS05821.1| hypothetical protein MAP_3273c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336459492|gb|EGO38431.1| nitroreductase family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=324

 Score =  415 bits (1067),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 216/323 (67%), Positives = 247/323 (77%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNT FPD ETVRT L LA RAPS+HNTQPWRWR+ P  L L++ P  QL  TDPDGR+LI
Sbjct  1    MNTGFPDPETVRTALALASRAPSVHNTQPWRWRIDPAGLHLYADPARQLPHTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG+AL HCV A A++GW+++V R PDP D  HLAT+   P   D  DVALAAAIPRRR
Sbjct  61   LSCGIALQHCVTAFAAVGWRSRVRRLPDPDDPDHLATLEFSPQTADYVDVALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YSCWPVP GDIALMAARAAR GV L QV  +D +  IVAQ++ DH+T ++YL EL
Sbjct  121  TDRRHYSCWPVPVGDIALMAARAARAGVTLYQVQDVDGLHDIVAQSIRDHLT-QDYLAEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRY SV+GVPARN P  DP+A IP RLFAG  L        ADD A +LALGT  D
Sbjct  180  TTWSGRYFSVSGVPARNTPFPDPAAKIPTRLFAGAALPMAQGSSAADDNAVVLALGTRHD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEA  +VLLTAT+ GLA CP+TEPLE  +TR AVRA++FG G +PQMLLRVG
Sbjct  240  DRLARLRAGEATGVVLLTATSAGLASCPVTEPLETPQTRAAVRADIFGDGHHPQMLLRVG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAPINADPLP TPRR+L+  VEW
Sbjct  300  WAPINADPLPATPRRDLADFVEW  322


>gi|342861120|ref|ZP_08717769.1| hypothetical protein MCOL_19652 [Mycobacterium colombiense CECT 
3035]
 gi|342131564|gb|EGT84834.1| hypothetical protein MCOL_19652 [Mycobacterium colombiense CECT 
3035]
Length=324

 Score =  412 bits (1058),  Expect = 5e-113, Method: Compositional matrix adjust.
 Identities = 213/323 (66%), Positives = 249/323 (78%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M+T FPDA T+RT LTLA RAPS+HNTQPWRWRV   SL+L++ P  QL +TDP+GR+LI
Sbjct  1    MDTRFPDAGTIRTALTLASRAPSVHNTQPWRWRVDAASLQLYADPGRQLPNTDPEGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
             SCG ALHHCV A A++GW+++V+R P+  D  HLATI + P   D  D+ALAAAIPRRR
Sbjct  61   RSCGTALHHCVAAFAAVGWRSRVSRLPNADDPAHLATIELSPQPADFVDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GDIALMAARAAR GV L QV  +D +  IVA++V DH+T ++YL EL
Sbjct  121  TDRRHYSSWPVPTGDIALMAARAARAGVTLCQVEDIDTLHDIVAESVRDHLT-QDYLAEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRY SVAGVPA N P SDP A IP RLFAG  L    D   ADD A +LALGT  D
Sbjct  180  TAWSGRYFSVAGVPAHNAPVSDPDAKIPSRLFAGAALPMAPDSSAADDNAVVLALGTRHD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLA+LRAGEA S+VLLTAT+ GLA CP+TEPLE  +TR+AVR+++FG   YPQMLLRVG
Sbjct  240  DRLAQLRAGEATSVVLLTATSTGLASCPVTEPLETTETREAVRSDIFGDSNYPQMLLRVG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAPINADPLP TPRR+L   VEW
Sbjct  300  WAPINADPLPATPRRDLGDFVEW  322


>gi|118463329|ref|YP_883260.1| hypothetical protein MAV_4111 [Mycobacterium avium 104]
 gi|254776537|ref|ZP_05218053.1| hypothetical protein MaviaA2_17969 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118164616|gb|ABK65513.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=324

 Score =  410 bits (1053),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 214/323 (67%), Positives = 245/323 (76%), Gaps = 1/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNT FPD ETVRT L LA RAPS+HNTQPWRWR+ P  L L++ P  QL  TDPDGR+LI
Sbjct  1    MNTGFPDPETVRTALALASRAPSVHNTQPWRWRIDPAGLHLYADPARQLPHTDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG+AL HCV A A++GW+++V R PDP D  HLAT+   P   D  DVALAAAIPRRR
Sbjct  61   LSCGIALQHCVTAFAAVGWRSRVRRLPDPDDPDHLATLEFSPQTADYVDVALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YSCWPVP GDIALMAARAAR GV L QV  +  +  IVAQ++ DH+T ++YL EL
Sbjct  121  TDRRHYSCWPVPVGDIALMAARAARAGVTLYQVQDVGGLHDIVAQSIRDHLT-KDYLAEL  179

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSGRY SV+GVPARN P  DP+A IP RLFAG  L         DD A +LALGT  D
Sbjct  180  TTWSGRYFSVSGVPARNTPFPDPAAKIPTRLFAGAALPMAPGSSAGDDNAVVLALGTRHD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRLARLRAGEA  +VLLTAT+ GLA CP+TEPLE  +TR AVRA++FG G +PQMLLRVG
Sbjct  240  DRLARLRAGEATGVVLLTATSAGLASCPVTEPLETPQTRAAVRADIFGDGHHPQMLLRVG  299

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAPINADPLP TPRR+L+  VEW
Sbjct  300  WAPINADPLPATPRRDLADFVEW  322


>gi|118471183|ref|YP_888244.1| hypothetical protein MSMEG_3955 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118172470|gb|ABK73366.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=334

 Score =  406 bits (1044),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 202/323 (63%), Positives = 249/323 (78%), Gaps = 0/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MNTHFPD ET+   L LA+RAPSIHN+QPW+WRV   S+ L++  D  L STDPD R+L+
Sbjct  1    MNTHFPDTETIHAALALAMRAPSIHNSQPWQWRVGERSVHLYADLDRHLTSTDPDSRDLL  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCV+A A+LGW A V+R P+P +  HLA+I ++   P   D+ALAAAIPRRR
Sbjct  61   LSCGAALHHCVIAFAALGWYASVHRLPNPAEPEHLASIELRRQTPTDLDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPV   DIA+M ARAAR GVMLR+V +L R++ IVA+++  H  D+ YLREL
Sbjct  121  TDRRHYSAWPVSHSDIAMMGARAARAGVMLRRVESLSRLQDIVAESIARHAADDGYLREL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T WSG+Y S AGVPAR+ P  +P AP+  R+FAG  L QP     AD+GA +LALGT  D
Sbjct  181  TAWSGKYASTAGVPARSAPKPEPGAPLSSRMFAGAALKQPDTGAGADEGAVVLALGTADD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
             R++RLRAGEA S++LLTATAMGLA CP+TEPLEI++TRDAV+AEVFGA  +PQM+LRVG
Sbjct  241  TRMSRLRAGEATSLILLTATAMGLATCPVTEPLEISETRDAVQAEVFGASAFPQMMLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAP+NADPLPPTPRR ++  V W
Sbjct  301  WAPVNADPLPPTPRRHVADAVRW  323


>gi|254822202|ref|ZP_05227203.1| hypothetical protein MintA_19874 [Mycobacterium intracellulare 
ATCC 13950]
Length=348

 Score =  400 bits (1027),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 214/321 (67%), Positives = 244/321 (77%), Gaps = 0/321 (0%)

Query  5    FPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCG  64
            FPD + + T+LTLA RAPSI NTQPWRWRV  TSL L++ P MQL +TDPDGR+LILSCG
Sbjct  20   FPDGQDIETILTLATRAPSIDNTQPWRWRVDRTSLHLYTDPGMQLPNTDPDGRDLILSCG  79

Query  65   VALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTDRR  124
             ALHHCVVALA++GW+A V+R PDP D  HLA I V P   D+A++ LA AIPRRRTDRR
Sbjct  80   AALHHCVVALAAMGWRADVHRLPDPADPDHLAAIEVSPHSSDRAEIVLAEAIPRRRTDRR  139

Query  125  AYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLRELTIWS  184
             YS  PV   +IA MAA AAR GV LR V A + +  IV +A L H TD +YL EL  WS
Sbjct  140  TYSARPVAATEIAAMAAVAARMGVTLRVVDARESLHDIVKRAALSHATDRDYLVELATWS  199

Query  185  GRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLA  244
            GRYGS AGVPARN P  D  APIPGR+FAGPGL+QP    PA+D A IL LG+E DDRLA
Sbjct  200  GRYGSRAGVPARNIPEHDCGAPIPGRIFAGPGLAQPPGTSPAEDNAVILVLGSEADDRLA  259

Query  245  RLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPI  304
            +LRAGEA S +LLTATAMGLA CPITEPLEI  TRDAVR +V+GA GYPQMLLRVGWA  
Sbjct  260  QLRAGEATSALLLTATAMGLASCPITEPLEIPDTRDAVRDDVWGAQGYPQMLLRVGWAAD  319

Query  305  NADPLPPTPRRELSQVVEWPE  325
            +A  LPPTPRR LS VV+W +
Sbjct  320  SAAALPPTPRRALSDVVQWSD  340


>gi|108798051|ref|YP_638248.1| hypothetical protein Mmcs_1078 [Mycobacterium sp. MCS]
 gi|119867146|ref|YP_937098.1| hypothetical protein Mkms_1094 [Mycobacterium sp. KMS]
 gi|126433711|ref|YP_001069402.1| hypothetical protein Mjls_1105 [Mycobacterium sp. JLS]
 gi|108768470|gb|ABG07192.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693235|gb|ABL90308.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126233511|gb|ABN96911.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=330

 Score =  385 bits (989),  Expect = 5e-105, Method: Compositional matrix adjust.
 Identities = 185/307 (61%), Positives = 235/307 (77%), Gaps = 0/307 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M T+ PD +T+   L+LA+RAPSIHN+QPWRWRV   S+ L++     L  TDPDGREL+
Sbjct  1    MTTYGPDRDTIHAALSLAIRAPSIHNSQPWRWRVGEDSVHLYADTPPHLSHTDPDGRELL  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCG AL+HCV+AL++LGW++ V+RFP+P +  HLA + +    P + D+ALAAAIPRRR
Sbjct  61   ISCGAALNHCVIALSALGWRSVVHRFPNPAEPLHLAALEMHRQAPGEVDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR +S WPV  GD+ALM ARAAR GV +R+V      +A++A+AV DH +D +Y  EL
Sbjct  121  TDRRHFSAWPVAIGDVALMGARAARAGVTMRRVETTSAFRAVLAKAVWDHASDPDYRDEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            ++WSGR+ S  GVPARN P S P A +PGRLFAGP L QP++  PADD A +L+LGT  D
Sbjct  181  SVWSGRHASTVGVPARNAPVSVPEARVPGRLFAGPALDQPAEADPADDNAVLLSLGTAGD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            D L+RLRAGEA S+VLLTATA+GLA CP+TEPLEI +TRDAVRA+VFG   YPQ+L RVG
Sbjct  241  DDLSRLRAGEATSLVLLTATALGLATCPVTEPLEIPETRDAVRADVFGESAYPQLLFRVG  300

Query  301  WAPINAD  307
            WAP+NAD
Sbjct  301  WAPVNAD  307


>gi|315444763|ref|YP_004077642.1| nitroreductase family protein [Mycobacterium sp. Spyr1]
 gi|315263066|gb|ADT99807.1| nitroreductase family protein [Mycobacterium sp. Spyr1]
Length=329

 Score =  384 bits (985),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 203/321 (64%), Positives = 244/321 (77%), Gaps = 1/321 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN HFPDAET+R+ L+LA RAPS+HN+QPW+WRV   S+ L++ PD+ L  TDPD R+L+
Sbjct  1    MNAHFPDAETLRSALSLANRAPSVHNSQPWQWRVGHESVHLYANPDLLLPHTDPDARDLM  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVVALA+LGWQAK++RFP+P +  HLA + ++       DV LAAAIPRRR
Sbjct  61   LSCGAALHHCVVALAALGWQAKIHRFPNPAEPDHLAALELRRYPAADLDVTLAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GD+ALM ARAAR GV LR+V  L  +K +V+ A   H TD  YL EL
Sbjct  121  TDRRYYSSWPVPQGDVALMGARAARAGVALRRVDDLAGLKRLVSAAAFQHRTDAGYLTEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY + AGVPAR+  P++ +  +  R FAG  LSQ  D     D A +LALGT  D
Sbjct  181  AAWSGRYAATAGVPARSV-PAETAGAVSARAFAGGVLSQTPDTAADQDSAVVLALGTAGD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRL+ LRAGEA S+VLLTATA+GLA CPITEPLEIA+TR+AVR +VFG  GYPQMLLRVG
Sbjct  240  DRLSWLRAGEATSVVLLTATALGLASCPITEPLEIAETREAVRRDVFGTDGYPQMLLRVG  299

Query  301  WAPINADPLPPTPRRELSQVV  321
            WAP+NADPLP TPRR+LS+VV
Sbjct  300  WAPVNADPLPSTPRRDLSEVV  320


>gi|145224430|ref|YP_001135108.1| hypothetical protein Mflv_3848 [Mycobacterium gilvum PYR-GCK]
 gi|145216916|gb|ABP46320.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=329

 Score =  382 bits (982),  Expect = 4e-104, Method: Compositional matrix adjust.
 Identities = 203/321 (64%), Positives = 243/321 (76%), Gaps = 1/321 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN HFPDAET+R+ L+LA RAPS+HN+QPW+WRV   S+ L++ PD+ L  TDPD R+L+
Sbjct  1    MNAHFPDAETLRSALSLANRAPSVHNSQPWQWRVGHESVHLYANPDLLLPHTDPDARDLM  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHHCVVALA+LGWQAK++RFP+P +  HLA + ++       DV LAAAIPRRR
Sbjct  61   LSCGAALHHCVVALAALGWQAKIHRFPNPAEPDHLAALELRRYPAADLDVTLAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS WPVP GD+ALM ARAAR GV LR+V  L  +K +V+ A   H TD  YL EL
Sbjct  121  TDRRYYSSWPVPQGDVALMGARAARAGVALRRVDDLAGLKRLVSAAAFQHRTDAGYLTEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
              WSGRY + AGVPAR+  P++ +  +  R FAG  L Q  D     D A +LALGT  D
Sbjct  181  AAWSGRYAATAGVPARSV-PAETAGAVSARAFAGGVLPQTPDTAADQDNAVVLALGTAGD  239

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            DRL+ LRAGEA S+VLLTATA+GLA CPITEPLEIA+TR+AVR +VFGA GYPQMLLRVG
Sbjct  240  DRLSWLRAGEATSVVLLTATALGLASCPITEPLEIAETREAVRRDVFGADGYPQMLLRVG  299

Query  301  WAPINADPLPPTPRRELSQVV  321
            WAP+NADPLP TPRR LS+VV
Sbjct  300  WAPVNADPLPSTPRRNLSEVV  320


>gi|296170565|ref|ZP_06852149.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894797|gb|EFG74522.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=372

 Score =  379 bits (972),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 196/326 (61%), Positives = 231/326 (71%), Gaps = 0/326 (0%)

Query  4    HFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSC  63
            HFPD   +   LTLA RAPSI NTQPWRWRV  TSL L++   M L   DPDGR+L LSC
Sbjct  42   HFPDDGVIGAALTLAGRAPSIENTQPWRWRVDRTSLHLYADARMHLPHADPDGRDLTLSC  101

Query  64   GVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTDR  123
            G AL+HCV+ALA+ GW A+V+R PDP D  HLA I V P  PD+ D+ LA AIP+RRTDR
Sbjct  102  GAALNHCVIALAATGWLAEVHRLPDPADPGHLAAIEVSPRAPDRTDIKLAKAIPQRRTDR  161

Query  124  RAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLRELTIW  183
            R YS  PV   D+A +AA A   G+ L QV  + R+  IV +A   H T+ +YL EL  W
Sbjct  162  RIYSARPVAASDVASLAAVAGGMGLRLHQVDEMRRLHEIVKRAAQTHATNRDYLVELARW  221

Query  184  SGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRL  243
            SGRYGS AGVPA +    D  A +PGR+FAGP L+QP    PADD A IL LG++ DDRL
Sbjct  222  SGRYGSRAGVPAHSTTEHDCGATVPGRIFAGPALAQPPGASPADDNAVILVLGSDADDRL  281

Query  244  ARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAP  303
            A+LRAGEAAS +LLTATAMGLA CPITEPLEI +TR AVR E++GA GYPQMLLR+GWAP
Sbjct  282  AQLRAGEAASAILLTATAMGLASCPITEPLEIPETRAAVRDEIWGATGYPQMLLRLGWAP  341

Query  304  INADPLPPTPRRELSQVVEWPEELLR  329
             +A  LPPTPRR L  VV+W  +  R
Sbjct  342  NSAAALPPTPRRALDDVVQWSRQTDR  367


>gi|126433739|ref|YP_001069430.1| hypothetical protein Mjls_1136 [Mycobacterium sp. JLS]
 gi|126233539|gb|ABN96939.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=330

 Score =  377 bits (968),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 187/323 (58%), Positives = 231/323 (72%), Gaps = 0/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M    P  +T+RT L+LA RAPSIHN+QPW W+V   S+ L+    ++L  TDPD RELI
Sbjct  1    MTVRSPGTDTLRTALSLANRAPSIHNSQPWHWQVGAHSVHLYVDESLRLAHTDPDARELI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCG AL+HC VAL +LGW  K+ R P+P D  HLA++ +    P ++D+ALAAAIPRRR
Sbjct  61   VSCGAALNHCAVALTALGWPPKIRRLPNPDDPSHLASLELHSHPPSESDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR +S WPV  GDIALM +RAAR GV +R+V      +  +A AV  H  D EYL EL
Sbjct  121  TDRRHFSDWPVSMGDIALMGSRAARAGVTMRRVELTPAFRTTLALAVGQHAADPEYLAEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T W+GR+ S  GVPARN P SDP+A +P RLFAG  L QP+   P+ D   ++ALGT TD
Sbjct  181  TGWTGRHASTVGVPARNTPESDPTAAVPARLFAGTTLEQPAGAEPSQDSGVVVALGTATD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            D + RLRAGEAASIVLLTAT +GLA CP+TEPLEI+ TRDA+R +VF    YPQ+LLRVG
Sbjct  241  DVMGRLRAGEAASIVLLTATTLGLATCPVTEPLEISATRDAIRDDVFDDVMYPQILLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAP+NADPLP TPRR L ++  W
Sbjct  301  WAPVNADPLPATPRRPLGELATW  323


>gi|108798079|ref|YP_638276.1| hypothetical protein Mmcs_1107 [Mycobacterium sp. MCS]
 gi|119867175|ref|YP_937127.1| hypothetical protein Mkms_1124 [Mycobacterium sp. KMS]
 gi|108768498|gb|ABG07220.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693264|gb|ABL90337.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=330

 Score =  377 bits (968),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 187/323 (58%), Positives = 231/323 (72%), Gaps = 0/323 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M    P  +T+RT L+LA RAPSIHN+QPW W+V   S+ L+    ++L  TDPD RELI
Sbjct  1    MTVRSPGTDTLRTALSLANRAPSIHNSQPWHWQVGAHSVHLYVDESLRLAHTDPDARELI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCG AL+HC VAL +LGW  K+ R P+P D  HLA++ +    P ++D+ALAAAIPRRR
Sbjct  61   VSCGAALNHCAVALTALGWPPKIRRLPNPDDPSHLASLELHSHPPSESDIALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR +S WPV  GDIALM +RAAR GV +R+V      +  +A AV  H  D EYL EL
Sbjct  121  TDRRHFSDWPVSMGDIALMGSRAARAGVTMRRVELTPTFRTTLALAVGQHAADPEYLAEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
            T W+GR+ S  GVPARN P SDP+A +P RLFAG  L QP+   P+ D   ++ALGT TD
Sbjct  181  TGWTGRHASTVGVPARNTPESDPTAAVPARLFAGTTLEQPAGAEPSQDSGVVVALGTVTD  240

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
            D + RLRAGEAASIVLLTAT +GLA CP+TEPLEI+ TRDA+R +VF    YPQ+LLRVG
Sbjct  241  DVMGRLRAGEAASIVLLTATTLGLATCPVTEPLEISATRDAIRDDVFDDVMYPQILLRVG  300

Query  301  WAPINADPLPPTPRRELSQVVEW  323
            WAP+NADPLP TPRR L ++  W
Sbjct  301  WAPVNADPLPATPRRPLGELATW  323


>gi|108801088|ref|YP_641285.1| hypothetical protein Mmcs_4124 [Mycobacterium sp. MCS]
 gi|119870229|ref|YP_940181.1| hypothetical protein Mkms_4199 [Mycobacterium sp. KMS]
 gi|126436926|ref|YP_001072617.1| hypothetical protein Mjls_4355 [Mycobacterium sp. JLS]
 gi|108771507|gb|ABG10229.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696318|gb|ABL93391.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126236726|gb|ABO00127.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=318

 Score =  350 bits (899),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 189/315 (60%), Positives = 231/315 (74%), Gaps = 0/315 (0%)

Query  3    THFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILS  62
            T FPDA+T+R  L  AVRAPS+HN+QPWRW V    L+LF+ P + LR  DPDGR+ +LS
Sbjct  2    TSFPDADTLRAALASAVRAPSVHNSQPWRWHVGADRLDLFAVPRLHLRHIDPDGRDFLLS  61

Query  63   CGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTD  122
            CG  LHH VVALA+LGWQA+V RFPDP D  HLA + + P  P   ++ALAAAIPRRRTD
Sbjct  62   CGATLHHAVVALAALGWQARVQRFPDPSDTNHLAVLTLSPQAPTSQELALAAAIPRRRTD  121

Query  123  RRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLRELTI  182
            RR YS   V   DIA+M ARAAR GV LR+V +L  ++A V  AV +H+ D+ YLRELT 
Sbjct  122  RRRYSSREVSPADIAVMGARAARFGVSLRRVESLTALRAAVDLAVREHLHDDAYLRELTA  181

Query  183  WSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDR  242
            W+GR+GSVAGVPA N PP+D +A +P R+FAG  ++QPS      D AA+LALGT  DD 
Sbjct  182  WTGRHGSVAGVPATNIPPADTAAAVPPRVFAGTAMAQPSGSADDADNAAVLALGTRDDDA  241

Query  243  LARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWA  302
             +RLRAGEA S+VLLTAT++GLA CP+TEPLEIA TR  +R E+F A  +PQMLLR+GW 
Sbjct  242  PSRLRAGEATSVVLLTATSIGLASCPVTEPLEIAATRATLREEIFEAQAHPQMLLRIGWL  301

Query  303  PINADPLPPTPRREL  317
            P +A  LP TPRR L
Sbjct  302  PRDAVALPATPRRPL  316


>gi|289751807|ref|ZP_06511185.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T92]
 gi|289692394|gb|EFD59823.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T92]
Length=175

 Score =  338 bits (866),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%)

Query  163  VAQAVLDHVTDEEYLRELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSD  222
            VAQAVLDHVTDEEYLRELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSD
Sbjct  6    VAQAVLDHVTDEEYLRELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSD  65

Query  223  VLPADDGAAILALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAV  282
            VLPADDGAAILALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAV
Sbjct  66   VLPADDGAAILALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAV  125

Query  283  RAEVFGAGGYPQMLLRVGWAPINADPLPPTPRRELSQVVEWPEELLRQRC  332
            RAEVFGAGGYPQMLLRVGWAPINADPLPPTPRRELSQVVEWPEELLRQRC
Sbjct  126  RAEVFGAGGYPQMLLRVGWAPINADPLPPTPRRELSQVVEWPEELLRQRC  175


>gi|333919787|ref|YP_004493368.1| hypothetical protein AS9A_2119 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333482008|gb|AEF40568.1| hypothetical protein AS9A_2119 [Amycolicicoccus subflavus DQS3-9A1]
Length=327

 Score =  313 bits (803),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 159/322 (50%), Positives = 216/322 (68%), Gaps = 1/322 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M+   PDA+T+R+ ++LA+RAPS+HNTQPW WR+   S+ L++   + LR TDPD R+L+
Sbjct  1    MDRQMPDADTIRSAVSLALRAPSVHNTQPWLWRIGDESINLYADRSLHLRHTDPDQRDLV  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHH  VALA+LGW+++V+R P+P D+ HLA++ +    P++ DVALAAAIPRRR
Sbjct  61   LSCGAALHHMRVALAALGWRSEVHRLPNPVDKDHLASLVLHRHHPNEKDVALAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR Y  WPVP   ++ +A  A   GV+ R + +  R   ++  A   H TD  Y  EL
Sbjct  121  TDRRHYGAWPVPPQYLSRLAQCAEDEGVVFRVLESRGRFAELITDAAAIHTTDSAYQAEL  180

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAP-IPGRLFAGPGLSQPSDVLPADDGAAILALGTET  239
              WSGR+GS  GVPA + P ++ +   I  R FA P L+       A D A ++ L T +
Sbjct  181  ATWSGRHGSPDGVPAHSAPIAEITTEGISARQFAWPALAPAPGTDAASDEAEVVMLTTAS  240

Query  240  DDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRV  299
            DD L+RLRAGEA+S V+L +T +GLA CPITEPLE+  TRD V+++V    G PQ+ +RV
Sbjct  241  DDVLSRLRAGEASSAVMLESTVLGLASCPITEPLEVRSTRDQVQSDVLHDSGVPQIAIRV  300

Query  300  GWAPINADPLPPTPRRELSQVV  321
            GWA INADPLP TPRR +   +
Sbjct  301  GWAHINADPLPATPRRPVDDFI  322


>gi|300787328|ref|YP_003767619.1| hypothetical protein AMED_5457 [Amycolatopsis mediterranei U32]
 gi|299796842|gb|ADJ47217.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
 gi|340528835|gb|AEK44040.1| hypothetical protein RAM_27815 [Amycolatopsis mediterranei S699]
Length=336

 Score =  311 bits (798),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 171/325 (53%), Positives = 216/325 (67%), Gaps = 4/325 (1%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M   FPD  TV+T + +AVRAPS+HN+QPW WR+  +SL L++ PD QLR TDPDGR+LI
Sbjct  1    MERGFPDDYTVKTAVAMAVRAPSVHNSQPWNWRIGHSSLHLYADPDRQLRETDPDGRDLI  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHH  +A A+LGW A+V+R P+P +  HLA I +Q   P Q +VA+AAAIPRRR
Sbjct  61   LSCGAALHHLRIAFAALGWTAEVHRLPNPDEPDHLAAITLQQHEPSQDEVAMAAAIPRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLR--QVSALDRMKAIVAQAVLDHVTDEEYLR  178
            TDRR  S W +P G +  MA  AA  G +L+  + SA   +   + QA   H  +  Y  
Sbjct  121  TDRRRLSSWTMPRGHVEAMAKAAALEGTLLQVAENSARYHLATAIEQAADRHARNPAYRT  180

Query  179  ELTIWSGRYGSVAGVPARNEP-PSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGT  237
            EL  WSGR+ +  GVPARN P P D    +  R FA P L+QP D    DD   +L L T
Sbjct  181  ELAAWSGRHAAPDGVPARNTPAPDDTPGALRTRSFADPLLTQPPDAKAEDDETVLLVLST  240

Query  238  ETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLL  297
             +DDR++RLRAGEA S  LLTATA GL+ CP+TEPLE+   RD V   V G G +PQM+L
Sbjct  241  ASDDRMSRLRAGEATSAALLTATAFGLSSCPLTEPLELPDVRDTVTERVTG-GSFPQMVL  299

Query  298  RVGWAPINADPLPPTPRRELSQVVE  322
            R+GWAP NADPL  TPRR+L+ V++
Sbjct  300  RIGWAPANADPLTATPRRDLADVLQ  324


>gi|54024865|ref|YP_119107.1| hypothetical protein nfa28960 [Nocardia farcinica IFM 10152]
 gi|54016373|dbj|BAD57743.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=335

 Score =  272 bits (696),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 165/323 (52%), Positives = 202/323 (63%), Gaps = 5/323 (1%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M+   PD  TV T L LA RAPS+HN QPWRWR+   S+ L+  P   L  TDPD R+++
Sbjct  11   MHRGLPDDSTVATALALAGRAPSVHNVQPWRWRIDRHSVHLYLDPARALPRTDPDRRDVV  70

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCG ALHH  VA  ++GW + V R PDP D  HLATI + P      D+A++AAIP+RR
Sbjct  71   ISCGAALHHLTVAFTAMGWASAVTRLPDPADENHLATIRLVPHRATGHDIAMSAAIPQRR  130

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVS--ALDRMKAIVAQAVLDHVTDEEYLR  178
            TDRR Y+  P+P G   L+A RAA  G M+R V   A  R+ A    A   H  D EY  
Sbjct  131  TDRRRYAPLPLPPGYPGLLAERAAALGAMVRVVDQPARRRLVAAARAAADRHALDPEYGF  190

Query  179  ELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTE  238
            EL +WSGR+ S  GVPARN P       +P R FA P L  P+  L   D A +L L T 
Sbjct  191  ELALWSGRHSSDDGVPARNTPAPRAGDELPARRFAAPRLLDPATDL---DHADLLVLATP  247

Query  239  TDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLR  298
             DDR ARLRAGEA S VLLTAT +GLA CP+TEPLE+ + RD VR  V     +PQ +LR
Sbjct  248  CDDRRARLRAGEALSAVLLTATNIGLATCPLTEPLEVGEQRDLVRRGVLNGTAHPQAVLR  307

Query  299  VGWAPINADPLPPTPRRELSQVV  321
            VGWAP +A+PLP TPRR ++ VV
Sbjct  308  VGWAPADAEPLPRTPRRPVTDVV  330


>gi|256376051|ref|YP_003099711.1| nitroreductase [Actinosynnema mirum DSM 43827]
 gi|255920354|gb|ACU35865.1| nitroreductase [Actinosynnema mirum DSM 43827]
Length=328

 Score =  243 bits (621),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 157/325 (49%), Positives = 202/325 (63%), Gaps = 4/325 (1%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M+   PD ET+R  + LA RAPS+HNTQPWRWR+  +S+ L++ P   L +TDPDG +L+
Sbjct  1    MDRGLPDDETIRAAVALACRAPSMHNTQPWRWRLGDSSVHLYADPQRCLPATDPDGADLV  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHH  VALA+LG +A V R P+  D  HLA++ +    P+  ++ALAAAI RRR
Sbjct  61   LSCGAALHHLRVALAALGMRAVVRRLPNASDPDHLASVELSRQEPEAEEIALAAAIQRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQV---SALDRMKAIVAQAVLDHVTDEEYL  177
            TDRR YS W VP   +  +  RA   GV+ R+V    A   +   VA+A      D  Y 
Sbjct  121  TDRRRYSSWAVPRAVLEQLVDRAVEEGVVAREVLGTRARFELSLAVARAAAVQEADPAYR  180

Query  178  RELTIWSGRYGSVAGVPARNEPPSDPSAPIPG-RLFAGPGLSQPSDVLPADDGAAILALG  236
             EL  WSG +    GVPA N P         G R F    L  P +    +DGA +L LG
Sbjct  181  SELRRWSGGHVEPEGVPAANAPLGQHRYGDVGMREFPSGELLCPENGTWEEDGATLLVLG  240

Query  237  TETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQML  296
            T +DDRL+RL+AGEA S VLL ATA GL  CP+++PLE+A+ R+ VR EV     +PQ+ 
Sbjct  241  TTSDDRLSRLKAGEAMSAVLLEATAAGLVACPLSQPLEVAEARERVRDEVLDGSVFPQIA  300

Query  297  LRVGWAPINADPLPPTPRRELSQVV  321
            LRVGWA  +ADPLPPTPRR L +V+
Sbjct  301  LRVGWASFDADPLPPTPRRALDEVL  325


>gi|256376540|ref|YP_003100200.1| nitroreductase [Actinosynnema mirum DSM 43827]
 gi|255920843|gb|ACU36354.1| nitroreductase [Actinosynnema mirum DSM 43827]
Length=325

 Score =  224 bits (572),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 150/324 (47%), Positives = 189/324 (59%), Gaps = 3/324 (0%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            MN   PDA TVR  +TLA RAPS+HNTQPWRWRV   S++L +    +L   DPDG +L+
Sbjct  1    MNRGQPDAATVRAAVTLACRAPSVHNTQPWRWRVGARSVQLHADTGRRLPGVDPDGADLL  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG ALHH  VALA++GW+A V R P P D  HLAT+     VP  A++ +A A+ RRR
Sbjct  61   LSCGAALHHLRVALAAVGWRALVRRMPSPDDPQHLATVEFARHVPTAAEIRMATALRRRR  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            TDRR YS W  P   +  +   A   GV+ R       + AI   A +    D  Y  EL
Sbjct  121  TDRRDYSNWAAPEAALERLERIAEAEGVVARVAGPAHLVPAISVAAAV-QAADPVYRVEL  179

Query  181  TIWSGR-YGSVAGVPARNEPPSDPS-APIPGRLFAGPGLSQPSDVLPADDGAAILALGTE  238
              W+GR  GS  GVPA + P +      +  R F    L+QP       D AA+L LGT 
Sbjct  180  RNWTGRGGGSPDGVPAASVPAAGSGRGVVRMREFPVGELAQPPGAGAERDEAALLVLGTI  239

Query  239  TDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLR  298
             DD L RLR+GEA S VLL ATA G+A CP+T+PLE+ + R  V   VFG    PQ++LR
Sbjct  240  RDDPLGRLRSGEAMSAVLLAATAAGMATCPLTQPLEVDEARYEVGRAVFGGDVVPQVVLR  299

Query  299  VGWAPINADPLPPTPRRELSQVVE  322
            +GW    A  LP TPRR + +VV+
Sbjct  300  LGWVLPGAAVLPLTPRRGVEEVVD  323


>gi|331694589|ref|YP_004330828.1| nitroreductase [Pseudonocardia dioxanivorans CB1190]
 gi|326949278|gb|AEA22975.1| nitroreductase [Pseudonocardia dioxanivorans CB1190]
Length=325

 Score =  223 bits (569),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 148/328 (46%), Positives = 194/328 (60%), Gaps = 16/328 (4%)

Query  7    DAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVA  66
            DA TVR  + LA  APS+HN+QPWRW V P SL L +     L+ TDPDGR+L++SCG A
Sbjct  6    DAATVRAAVGLACMAPSVHNSQPWRWLVGPASLHLHADLGRWLQVTDPDGRDLVMSCGAA  65

Query  67   LHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQP-LVPD-QADVALAAAIPRRRTDRR  124
            LHH  VAL + G  A V+R P+P D  HLA + ++    PD + D+ LA+AIP RR+DRR
Sbjct  66   LHHLRVALVAAGRHAVVHRLPNPADGDHLAAVELRADGRPDTETDIGLASAIPVRRSDRR  125

Query  125  AYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEE----YLREL  180
             +S WPVP   +  + A AA  G  L  V   D   A V +A+ D    ++    Y  EL
Sbjct  126  RFSTWPVPPAFLDELVAAAAANGARLTPVEPAD--HAAVLRAIRDAGLAQQSLPGYSTEL  183

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPS--DVLPADDGAAILALGTE  238
             +WSG      GVPA N  P+DP A  P      PG+ +    DV   DDGA +L + T 
Sbjct  184  AMWSGGLVGPDGVPAANL-PADPGAAGPAVRHFTPGVLEERYPDV---DDGAQLLIIATS  239

Query  239  TDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLR  298
            +DD L+ LRAGEA S V L A   GLA CP++ P+E+ +TR A+R +V G    PQ++LR
Sbjct  240  SDDPLSWLRAGEALSAVSLRAVVQGLASCPLSTPMEVTRTRLALRDDVLGGTSVPQLVLR  299

Query  299  VGWAPINADPLPPTPRRELSQVVEWPEE  326
            VGW P  +  LP TPRR +S V+   E+
Sbjct  300  VGWPP--SGELPRTPRRPVSDVLTTVED  325


>gi|317507618|ref|ZP_07965331.1| hypothetical protein HMPREF9336_01703 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316254095|gb|EFV13452.1| hypothetical protein HMPREF9336_01703 [Segniliparus rugosus ATCC 
BAA-974]
Length=342

 Score =  222 bits (565),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 145/331 (44%), Positives = 186/331 (57%), Gaps = 12/331 (3%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M+  FPD  TV  V++LA RAPS+HN+QPW WRV   S+ L++ P  QLR  DPDGREL+
Sbjct  1    MSRTFPDDRTVAAVISLADRAPSLHNSQPWLWRVGRESVHLYADPARQLREADPDGRELL  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            +SCG ALHH  +A A+LGW+A+  R P+P +  HLA I +    P   +V L AAI  R 
Sbjct  61   ISCGAALHHARLAFAALGWRAETRRLPNPAEPAHLAAIELHRHDPSATEVMLCAAISARN  120

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDR--MKAIVAQAVLDHVTDEEYLR  178
            +DRR  S   VPG  +  M   AA  G +L    ++ R  +     +A   H    EY R
Sbjct  121  SDRRRLSPRSVPGHVVEAMERAAAAEGALLAAADSIARRTLSTAAVEAAGHHSASLEYRR  180

Query  179  ELTIWSGRYGSVAGVPARNEPP--SDPSAPIPGRLFAGPGLSQP------SDVLPADDGA  230
            E+  W+G++ S  GV A + PP  S P+  +P R F  PGL Q       SD      G 
Sbjct  181  EIERWTGKHLSSDGVLAVSTPPVASGPN-DMPDRRFTAPGLWQSAAADHCSDDEIRGSGD  239

Query  231  AILALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAG  290
             IL L T  DDR A+LRAGEA S  LL A   GL+ C +TE LEI  TR  +R EV G  
Sbjct  240  VILTLSTALDDRAAQLRAGEATSAALLAAAQRGLSTCLLTEALEIPATRSRIRREVTGQ-  298

Query  291  GYPQMLLRVGWAPINADPLPPTPRRELSQVV  321
             YPQ ++RVGW P +   L   PRR   +V+
Sbjct  299  RYPQAIIRVGWPPEDGSALASAPRRAAHEVL  329


>gi|331696254|ref|YP_004332493.1| nitroreductase [Pseudonocardia dioxanivorans CB1190]
 gi|326950943|gb|AEA24640.1| nitroreductase [Pseudonocardia dioxanivorans CB1190]
Length=324

 Score =  200 bits (508),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 138/323 (43%), Positives = 179/323 (56%), Gaps = 10/323 (3%)

Query  4    HFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSC  63
            H  D  T+   +  AVRAPSIHNTQPWRW V P  +EL + P  +L +TDPDGR++++SC
Sbjct  6    HGIDISTLEEAVRRAVRAPSIHNTQPWRWHVAPGRVELHADPGRRLIATDPDGRDMLVSC  65

Query  64   GVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTDR  123
            G ALHH  VALA +G      R PDP+ R HLAT+ V       AD +L A I RRR DR
Sbjct  66   GAALHHLRVALAGVGANTATTRLPDPERRDHLATVHVVDGHAPSADASLYAQIDRRRCDR  125

Query  124  RAYSCWPVP---GGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
            R Y     P   GG      ARA    ++  +  A +R+   +  A LD      Y+ EL
Sbjct  126  RPYDAGASPTLVGG--LTRRARALGADIVAVEGPARERILRAIDDAALDQPHRPGYVGEL  183

Query  181  TIWSGRY-GSVAGVPARNEPPSDPSAPIPGR-LFAGPGLSQPSDVLPADDGAAILALGTE  238
             +W+ RY G+  GVP  + P   P    P R  F    L Q +   P  D   +  + T 
Sbjct  184  VVWTHRYAGARDGVPRTSIPADGPGTGSPHRNRFPSGTLPQRASFGP--DAGTLFVVTTP  241

Query  239  TDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLR  298
             DDR+ RLRAGEA S VLL A A G A CP+++ LE++ TR  V+    G  G+PQ+LLR
Sbjct  242  GDDRIDRLRAGEAVSAVLLAAAAAGYASCPLSQALELSSTRSRVQYTA-GTTGHPQLLLR  300

Query  299  VGWAPINADPLPPTPRRELSQVV  321
            +G  P +  P+P TPRR LS V+
Sbjct  301  IGRPPAHGGPVPETPRRSLSAVL  323


>gi|326332436|ref|ZP_08198712.1| hypothetical protein NBCG_03882 [Nocardioidaceae bacterium Broad-1]
 gi|325949749|gb|EGD41813.1| hypothetical protein NBCG_03882 [Nocardioidaceae bacterium Broad-1]
Length=327

 Score =  188 bits (478),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 124/327 (38%), Positives = 170/327 (52%), Gaps = 15/327 (4%)

Query  3    THFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILS  62
            +  PD  T+R +L LA RAPS+HNTQPW W V    L L + P  +L   DP+ R+L++S
Sbjct  2    SRLPDEPTLRAILGLASRAPSVHNTQPWAWAVRDQMLLLRADPHRKLLHADPNERDLVMS  61

Query  63   CGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTD  122
            CG ALH  VVA A  GW   V+R P+      LA +   P  PD AD+   AAI +R TD
Sbjct  62   CGAALHELVVAAAGTGWACTVHRTPEGGRTDLLAVVTFTPREPDTADLGRLAAIEQRHTD  121

Query  123  RRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAV----LDHVTDEEYLR  178
            RR  S WPVP   +  +A       V+   V   D ++ +V  A+        TDE YL 
Sbjct  122  RRLVSSWPVPRERLDHLAELVRDHAVVATTVP--DHLRPVVLSALETARAHQSTDEAYLA  179

Query  179  ELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAI---LAL  235
            EL  W+ R G+  G+P   E     +   P      PG +   D    D G +    + L
Sbjct  180  ELYSWT-RGGTEDGIP---ESSLLAAGSDPASYSRFPGGTLADDY--GDTGGSAEEWVVL  233

Query  236  GTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQM  295
             T +DD L+ LRAGEA   + L+ T  GLA  P T+P+EI  TR  ++ ++ G    PQ+
Sbjct  234  ATASDDPLSWLRAGEALDAIWLSCTTSGLALVPYTQPIEIGSTRRTLQHDLLGDNSCPQV  293

Query  296  LLRVGWAPINADPLPPTPRRELSQVVE  322
            L+R+GW   +   LPPTPRR +  ++ 
Sbjct  294  LVRIGWPQRHQALLPPTPRRAVDDILH  320


>gi|120401196|ref|YP_951025.1| hypothetical protein Mvan_0168 [Mycobacterium vanbaalenii PYR-1]
 gi|119954014|gb|ABM11019.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=273

 Score =  184 bits (467),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 126/323 (40%), Positives = 165/323 (52%), Gaps = 53/323 (16%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            M T FPD   + +VL LA +APS+ NTQPWRW V    ++LF+    +L  TD D R+++
Sbjct  1    MTTAFPDTAVLESVLDLAAQAPSVRNTQPWRWHVDQRGVQLFADWTRRLGDTDSDRRDVV  60

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRR  120
            LSCG  LHHC VALA  GW +++ R PD      LA + ++   P      LAAAI  RR
Sbjct  61   LSCGAVLHHCAVALADAGWSSRIRRLPDDG---VLAALELEERPPGAGSHELAAAIAHRR  117

Query  121  TDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLREL  180
             DRR Y+   +P G I L+  RA R GV L          A+V       + D E+    
Sbjct  118  ADRRPYTG-SLPAGMIELLMLRAERFGVRL----------AVVPTVRWARIGDAEF----  162

Query  181  TIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETD  240
               + RYG             D S   PG                  D AA+L L T+TD
Sbjct  163  ---ALRYG-------------DSSPGHPG------------------DDAAMLVLATDTD  188

Query  241  DRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVG  300
                RLRAGEA S + L ATA+GLA CP+TEPL+  + R A+  EVF    +PQ L+R+G
Sbjct  189  TEAMRLRAGEALSDLTLAATALGLASCPLTEPLKDERNRLALACEVFDGEAHPQALIRLG  248

Query  301  WAPINADPLPPTPRRELSQVVEW  323
              P   DPLPP  RR +++   +
Sbjct  249  -RPGAGDPLPPVRRRPVAETTTF  270


>gi|134099020|ref|YP_001104681.1| hypothetical protein SACE_2458 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291006883|ref|ZP_06564856.1| hypothetical protein SeryN2_20378 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133911643|emb|CAM01756.1| hypothetical protein SACE_2458 [Saccharopolyspora erythraea NRRL 
2338]
Length=322

 Score =  181 bits (460),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 128/319 (41%), Positives = 170/319 (54%), Gaps = 10/319 (3%)

Query  11   VRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHC  70
            +R+ L LA RAPS+HN+QPWRW++   S++L++     L   DP GRE+++SCG  LHH 
Sbjct  1    MRSALALACRAPSVHNSQPWRWKLAEHSVQLYADRSRLLPVLDPLGREMVISCGAGLHHA  60

Query  71   VVALASLGWQAKVNRFPDPKDRCHLATIGVQPL--VPDQADVALAAAIPRRRTDRRAYSC  128
             VA A+ GW+  V+R P+P    HLA+I    L  V D+A V LAA    R TDRR +  
Sbjct  61   RVAFAAEGWRPIVHRVPNPAQPDHLASIEFSRLSEVDDEA-VRLAAVAVDRHTDRRPFLP  119

Query  129  WPVPGGDIALMAARAARGG---VMLRQVSALDRMKAIVAQAVLDHVTDEEYLRELTIWSG  185
             PVP   +  +   A   G   V++   S    ++  +  A        EY REL  WSG
Sbjct  120  DPVPPDLLESLRVFAHSAGARLVLVSDESTRREVELAIQHAGSVERARPEYRRELAEWSG  179

Query  186  RYGSVAGVPARNEPPSDPS-APIPGRLFAGPGLSQ-PSDVLPADDGAAILALGTETDDRL  243
             +    GVPAR+ P   P    +  R F      + P  VL  DDGA +  L T  D   
Sbjct  180  THVLAEGVPARSLPERSPYPRGMAERDFGEVAEGELPVPVL--DDGAVLAVLATGGDTVS  237

Query  244  ARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAP  303
              L AGEA S VLL AT  GLA CP+++  E+A+ RD V  +V G  G PQ+++RVGW  
Sbjct  238  DWLGAGEALSAVLLAATREGLATCPLSQVSEVAEARDQVCRQVLGGAGVPQLVVRVGWPV  297

Query  304  INADPLPPTPRRELSQVVE  322
                P   T RR LS+ VE
Sbjct  298  TGEFPAVHTHRRPLSESVE  316


>gi|302867182|ref|YP_003835819.1| nitroreductase [Micromonospora aurantiaca ATCC 27029]
 gi|302570041|gb|ADL46243.1| nitroreductase [Micromonospora aurantiaca ATCC 27029]
Length=331

 Score =  180 bits (457),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 133/311 (43%), Positives = 171/311 (55%), Gaps = 12/311 (3%)

Query  18   AVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHCVVALASL  77
            ++ APS+ NTQPWRWRV   +LEL +  D QL  TDPDGR L+LSCG ALHH  V+L ++
Sbjct  24   SLHAPSVFNTQPWRWRVTGDALELRADADRQLAHTDPDGRLLMLSCGAALHHARVSLTAV  83

Query  78   GWQAKVNRFPDPKDRCHLATIGVQPLVPDQADV---ALAAAIPRRRTDRRAYSCWPVPGG  134
            GW   V R PDP D   LA   V+   P   DV    L  AIPRRRTDRRAY   PVP  
Sbjct  84   GWAVTVERLPDPGDPSLLAR--VRTTGPADLDVPAGRLVDAIPRRRTDRRAYGDRPVPEA  141

Query  135  DIALMAARAARGGVMLRQV--SALDRMKAIVAQAVLDHVTDEEYLRELTIWSGR-YGSVA  191
             +A +       G  L  V    +  +     +A    + D  Y  EL  W+ R  GS  
Sbjct  142  VLARLGDAVEAEGAHLHVVRPDQMPMLAVSTGRAADAELADPAYREELHRWTHRPEGSGD  201

Query  192  GVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLARLRAGEA  251
            GVPA       P   +P R +A  G +  S     D GAA L L  E+D+  A LR GEA
Sbjct  202  GVPAATAVRPSPRR-VPLRDYAPGGAAGLSAGADFDRGAAYLILFGESDEPAAWLRGGEA  260

Query  252  ASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPINADPLPP  311
             S +LLTATA GLA  P+++ +E+A  R  +R ++    G P +++RVGW P +A+ LPP
Sbjct  261  LSALLLTATAEGLASAPLSDAVELAWPRRMMR-DLLAGIGDPYLVVRVGWGP-DAE-LPP  317

Query  312  TPRRELSQVVE  322
             PRR  + V+E
Sbjct  318  APRRAPADVIE  328


>gi|315506409|ref|YP_004085296.1| nitroreductase [Micromonospora sp. L5]
 gi|315413028|gb|ADU11145.1| nitroreductase [Micromonospora sp. L5]
Length=334

 Score =  180 bits (456),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 133/311 (43%), Positives = 171/311 (55%), Gaps = 12/311 (3%)

Query  18   AVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHCVVALASL  77
            ++ APS+ NTQPWRWRV   +LEL +  D QL  TDPDGR L+LSCG ALHH  V+L ++
Sbjct  24   SLHAPSVFNTQPWRWRVTGDALELRADADRQLAHTDPDGRLLMLSCGAALHHARVSLTAV  83

Query  78   GWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVA---LAAAIPRRRTDRRAYSCWPVPGG  134
            GW   V R PDP D   LA   V+   P   DV    L  AIPRRRTDRRAY   PVP  
Sbjct  84   GWAVTVERLPDPGDPSLLAR--VRTTGPADLDVPAGRLVDAIPRRRTDRRAYGDRPVPEA  141

Query  135  DIALMAARAARGGVMLRQV--SALDRMKAIVAQAVLDHVTDEEYLRELTIWSGR-YGSVA  191
             +A +       G  L  V    +  +     +A    + D  Y  EL  W+ R  GS  
Sbjct  142  VLARLGDAVEAEGAHLHVVRPDQMPMLAVSTGRAADAELADPAYREELHRWTHRPEGSGD  201

Query  192  GVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLARLRAGEA  251
            GVPA       P   +P R +A  G +  S     D GAA L L  E+D+  A LR GEA
Sbjct  202  GVPAATAVRPSPRR-VPLRDYAPGGAAGLSAGADFDRGAAYLILFGESDEPAAWLRGGEA  260

Query  252  ASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPINADPLPP  311
             S +LLTATA GLA  P+++ +E+A  R  +R ++    G P +++RVGW P +A+ LPP
Sbjct  261  LSALLLTATAEGLASAPLSDAVELAWPRRMMR-DLLAGIGDPYLVVRVGWGP-DAE-LPP  317

Query  312  TPRRELSQVVE  322
             PRR  + V+E
Sbjct  318  APRRAPADVIE  328


>gi|119868659|ref|YP_938611.1| hypothetical protein Mkms_2624 [Mycobacterium sp. KMS]
 gi|119694748|gb|ABL91821.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=297

 Score =  178 bits (452),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 123/319 (39%), Positives = 156/319 (49%), Gaps = 49/319 (15%)

Query  5    FPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCG  64
             PD  T+  VL  A  APS  N QPW WRV P  ++LF+    +L     D R+++LSCG
Sbjct  26   LPDVATLERVLDAAAHAPSAQNAQPWSWRVTPGGVDLFADWSRRLGDGGQDRRDVLLSCG  85

Query  65   VALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTDRR  124
              LHHC VAL + GW  ++ RFP   D  HLA I +    P   D+ LA AIPRRR DRR
Sbjct  86   AVLHHCAVALGADGWAPRIRRFPARDDTDHLALIELIEAPPSAGDIELAEAIPRRRADRR  145

Query  125  AYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLRELTIWS  184
             Y   P+P G + L+  RA R GV    V      ++     VL                
Sbjct  146  PYRAQPLPEGSLELLHVRAERDGVRFGVVPRTGWGRSSDGDVVL----------------  189

Query  185  GRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLA  244
             +YGS    PA                                D AA+L L T+TD  LA
Sbjct  190  -QYGSPTAAPA--------------------------------DEAALLVLATDTDGDLA  216

Query  245  RLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPI  304
             LRAGE  S VLL AT+MGLA CP+T PL   ++R ++  EVF    YPQ+L+R+GWAP 
Sbjct  217  HLRAGEVMSDVLLVATSMGLASCPLTTPLTDTRSRLSLACEVFDGEAYPQVLIRLGWAPA  276

Query  305  NADPLPPTPRRELSQVVEW  323
            +   LP   RR +S+   W
Sbjct  277  DGTALPVLERRSVSETTTW  295


>gi|108799546|ref|YP_639743.1| hypothetical protein Mmcs_2579 [Mycobacterium sp. MCS]
 gi|108769965|gb|ABG08687.1| conserved hypothetical protein [Mycobacterium sp. MCS]
Length=279

 Score =  178 bits (451),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 123/319 (39%), Positives = 156/319 (49%), Gaps = 49/319 (15%)

Query  5    FPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCG  64
             PD  T+  VL  A  APS  N QPW WRV P  ++LF+    +L     D R+++LSCG
Sbjct  8    LPDVATLERVLDAAAHAPSAQNAQPWSWRVTPGGVDLFADWSRRLGDGGQDRRDVLLSCG  67

Query  65   VALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTDRR  124
              LHHC VAL + GW  ++ RFP   D  HLA I +    P   D+ LA AIPRRR DRR
Sbjct  68   AVLHHCAVALGADGWAPRIRRFPARDDTDHLALIELIEAPPSAGDIELAEAIPRRRADRR  127

Query  125  AYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEEYLRELTIWS  184
             Y   P+P G + L+  RA R GV    V      ++     VL                
Sbjct  128  PYRAQPLPEGSLELLHVRAERDGVRFGVVPRTGWGRSSDGDVVL----------------  171

Query  185  GRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLA  244
             +YGS    PA                                D AA+L L T+TD  LA
Sbjct  172  -QYGSPTAAPA--------------------------------DEAALLVLATDTDGDLA  198

Query  245  RLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPI  304
             LRAGE  S VLL AT+MGLA CP+T PL   ++R ++  EVF    YPQ+L+R+GWAP 
Sbjct  199  HLRAGEVMSDVLLVATSMGLASCPLTTPLTDTRSRLSLACEVFDGEAYPQVLIRLGWAPA  258

Query  305  NADPLPPTPRRELSQVVEW  323
            +   LP   RR +S+   W
Sbjct  259  DGTALPVLERRSVSETTTW  277


>gi|325001930|ref|ZP_08123042.1| hypothetical protein PseP1_24351 [Pseudonocardia sp. P1]
Length=482

 Score =  177 bits (450),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 133/318 (42%), Positives = 174/318 (55%), Gaps = 10/318 (3%)

Query  11   VRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHC  70
            VR  +  A+ APS+HN+QPWRWR+    +EL+  PD +L  TDPDGR+L++SCG AL H 
Sbjct  163  VRQAVATALMAPSVHNSQPWRWRIGADRIELYGDPDRRLPFTDPDGRDLLVSCGSALSHL  222

Query  71   VVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPD---QADVALAAAIPRRRTDRRAYS  127
             VALA+     +  RFP   DR HLAT+ +    PD   +AD  LA AI  RR+DRR ++
Sbjct  223  HVALAAADVGHETLRFPT-DDRHHLATVRLTGEPPDRAARADRVLAPAIAVRRSDRRPFT  281

Query  128  CWPVPGGDIALMAARAARGGVMLRQVS---ALDRMKAIVAQAVLDHVTDEEYLRELTIWS  184
               +     A +  RAAR GV L  V+   A +++  +  +A  D         EL +W+
Sbjct  282  DGELAPHTRAALGLRAARYGVALHAVTGTAAREQLAELEREAARDARRRPGQAAELLVWT  341

Query  185  GRY-GSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRL  243
             RY GS  GV A + P               P  S P D L A D A IL L T  DD  
Sbjct  342  HRYAGSRDGVRASSVPAGTLRTAGDDLAVRFPPGSLPVDPL-AHDRATILVLSTPADDDE  400

Query  244  ARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAP  303
            ARL AGEA   +LL AT  GLA CP+T  LE   TR A+ + V     + Q+L+R+G AP
Sbjct  401  ARLAAGEAGGALLLAATRAGLATCPLTRILETRATRAALASRVLRTPDHAQLLIRIGRAP  460

Query  304  INADPLPPTPRRELSQVV  321
             + + LP TPRR LS V+
Sbjct  461  DDRE-LPATPRRRLSDVL  477


>gi|145594126|ref|YP_001158423.1| hypothetical protein Strop_1579 [Salinispora tropica CNB-440]
 gi|145303463|gb|ABP54045.1| hypothetical protein Strop_1579 [Salinispora tropica CNB-440]
Length=382

 Score =  177 bits (448),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 133/307 (44%), Positives = 171/307 (56%), Gaps = 13/307 (4%)

Query  22   PSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHCVVALASLGWQA  81
            PS+HNTQPWRWRV P +LEL    D QL +TDP+GR LILSCG ALHH  VALA+ GWQA
Sbjct  76   PSVHNTQPWRWRVLPDTLELRVVRDRQLTATDPEGRLLILSCGAALHHARVALAAEGWQA  135

Query  82   KVNRFPDPKDRCHLATI-GVQPLVPDQADVALAAAIPRRRTDRRAYSCWPVPGGDIALMA  140
             V R PDP D   LA + G+  +  D   + L   +  R TDRR     PV    +  + 
Sbjct  136  VVERIPDPGDEDLLARLTGLTRVGADPEAMHLVQCMRIRHTDRRPVGDEPVTDSALTEIT  195

Query  141  ARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEE-YLR-ELTIWSGRYGSVAGVPARNE  198
              A   GV L+Q+     ++   A +  D V  E+  LR EL  W+ R   V G+PA   
Sbjct  196  EAATAEGVRLQQLDRDQVLQLATAASQADTVESEDPQLRTELAYWTSRADDV-GLPAAVL  254

Query  199  PPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILAL--GTETDDRLARLRAGEAASIVL  256
            P S P   +PGR F   G + P  V P  D AA  AL  G E D+ +  LRAGEA S   
Sbjct  255  PESPPQTTVPGRDFGRAG-TLP--VGPGHDQAAGYALLYGDE-DEPITWLRAGEALSAGW  310

Query  257  LTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWA-PINADPLPPTPRR  315
            LTAT +G++  P++  +E+  TR  +R  V    GYP ++LR+G A P +A P P TPR 
Sbjct  311  LTATRLGVSMVPLSGVIEVPSTRAELRG-VLAGMGYPYLVLRLGRADPTHAGP-PHTPRL  368

Query  316  ELSQVVE  322
             + QVV+
Sbjct  369  AMEQVVD  375


>gi|119715233|ref|YP_922198.1| hypothetical protein Noca_0990 [Nocardioides sp. JS614]
 gi|119535894|gb|ABL80511.1| conserved hypothetical protein [Nocardioides sp. JS614]
Length=342

 Score =  173 bits (439),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 122/325 (38%), Positives = 169/325 (52%), Gaps = 17/325 (5%)

Query  6    PDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGV  65
            PD      V   A+RAPSIHNTQPWRWR     ++L++    QL   DPDGR L +SCG 
Sbjct  19   PDTTAGLRVAEAALRAPSIHNTQPWRWRASAARVDLYADRARQLAVADPDGRNLTISCGA  78

Query  66   ALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLVPDQADVALAAAIPRRRTDRRA  125
            ALH   VA  + GW A++ R PDP D   LAT+ ++P       V    A+  RRTDRR 
Sbjct  79   ALHQATVAARAHGWSAEITRLPDPGDPDLLATLHLRPGRQLYEAVQDLQALQERRTDRRR  138

Query  126  YSCWPVPGGDIALMAARAARGGVMLRQVSAL-DRMKA--IVAQAVLDHVTDEEYLRELTI  182
            ++ WPVP   +A +AA      V +  V+A  DR++   +V++A      D     E   
Sbjct  139  FTSWPVPPERLARLAASVGVDQVRVVPVTAAPDRVRVELLVSRATTLVKADRRLADEQRS  198

Query  183  WSGRYGSVAGVPAR------NEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAILALG  236
            W  R   V G+P+        +PPS  S     R    P        +   DG  +L + 
Sbjct  199  WLDR-SEVDGIPSDLLPGPGAQPPSRSS-----RFVEEPAEGDVRGAIETSDG--LLMIA  250

Query  237  TETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQML  296
            T+TDD  A LR GEA   + L A   GL+  P+++ +E+ +TR A+  E+ G   +PQ+L
Sbjct  251  TDTDDAEAWLRTGEALGQLWLHAMNDGLSVVPLSQVIEVDETRTALHHELLGGLLHPQLL  310

Query  297  LRVGWAPINADPLPPTPRRELSQVV  321
            +R+GW  I   PLP TPRR L+ V+
Sbjct  311  VRIGWQEIARSPLPRTPRRPLADVL  335


>gi|333921514|ref|YP_004495095.1| hypothetical protein AS9A_3857 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333483735|gb|AEF42295.1| hypothetical protein AS9A_3857 [Amycolicicoccus subflavus DQS3-9A1]
Length=331

 Score =  173 bits (438),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 116/310 (38%), Positives = 162/310 (53%), Gaps = 19/310 (6%)

Query  22   PSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHCVVALASLGWQA  81
            PS+HNTQPW W +   SLELF+ P+  +   DP GR++++SCG ALHH  VAL  +G++A
Sbjct  23   PSVHNTQPWLWELRDGSLELFADPERMVNVADPSGRQMVISCGAALHHAKVALTGMGYEA  82

Query  82   KVNRFPDPKDRCHLATIGVQPL-VPDQADVALAAAIPRRRTDRRAYSCWPVPGGDIALMA  140
             + R PDP D  H+ATI ++P+  PD+ D  L  A+  RR+DRR     P+   ++ ++ 
Sbjct  83   AIVRMPDPSDAFHVATITIKPVTFPDERDRVLGEAVQIRRSDRRPLG--PLADNEVHILK  140

Query  141  ARAARGGVMLRQVSALDR-----MKAIVAQAVLDHVTDEEYLRELTIWSGRYGSVAGVPA  195
                     L  ++ LD      +K     AV +   DE Y REL  WSG Y    GVP 
Sbjct  141  TAFHDD---LVSITVLDSDGAHLVKEASELAVRERAADEPYHRELNWWSGHYRLFDGVPR  197

Query  196  RNEPPSDPSAPIP-GRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLARLRAGEAASI  254
             + P  +    +P GR F   G  +P   +P  D A++L + T  D     LR GEA S 
Sbjct  198  SSLPSLEKRGAVPSGREFPA-GTLKPQRDMP--DRASLLIMSTSGDSAEDWLRCGEAMSA  254

Query  255  VLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGG---YPQMLLRVGWAPINADPLPP  311
            VLL A A  L  CP+T   EI  +R  VR     AG    YPQ+++R G       P P 
Sbjct  255  VLLRAAASRLGACPVTHVTEIEDSRALVRDAAQRAGEVRRYPQVVIRAGERLATGLP-PE  313

Query  312  TPRRELSQVV  321
            T RR + +++
Sbjct  314  TGRRPVEEIL  323


>gi|159037164|ref|YP_001536417.1| hypothetical protein Sare_1530 [Salinispora arenicola CNS-205]
 gi|157915999|gb|ABV97426.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=380

 Score =  172 bits (435),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 127/309 (42%), Positives = 167/309 (55%), Gaps = 17/309 (5%)

Query  22   PSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELILSCGVALHHCVVALASLGWQA  81
            PS+HNTQPWRWRV P  LEL    D QL +TDP+GR L+LSCG ALHH  VALA+ GW+A
Sbjct  74   PSVHNTQPWRWRVLPDGLELRVVRDRQLTATDPEGRLLVLSCGAALHHARVALAAEGWRA  133

Query  82   KVNRFPDPKDRCHLATI-GVQPLVPDQADVALAAAIPRRRTDRRAYSCWPVPGGDIALMA  140
             V R P   D   LA   G+  +  D   + L   +  R TDRR  S  P+    +  + 
Sbjct  134  VVERIPHADDPDLLARFTGLTQVGADPEAMHLVQCMRIRHTDRRPVSDEPIADAALDEIT  193

Query  141  ARAARGGVMLRQVSALDRMKAIVAQAVLDHVTDEE-YLR-ELTIWSGRYGSVAGVPARNE  198
              A   GV L+ +     ++   A +  D V  E+  LR EL  W+GR G V G+PA   
Sbjct  194  EAATADGVRLQLLDRGQVLQLATAASQADTVESEDPQLRAELAYWTGRAGDV-GLPAAVL  252

Query  199  PPSDPSAPIPGRLFAGPGLSQPSDVLPA----DDGAAILALGTETDDRLARLRAGEAASI  254
            P S P   +PGR F  PG       LP     D  A    L  + D+ +  LRAGEA S 
Sbjct  253  PESPPQTTVPGRDFGRPG------TLPVGSGHDQAAGYALLYGDEDEPVDWLRAGEALSA  306

Query  255  VLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWA-PINADPLPPTP  313
              LTAT +G++  P++  +E+  TR A+R  + G  GYP ++LR+G A P +A P P TP
Sbjct  307  GWLTATRLGVSVVPLSGVVEVPGTRAALRGMLAGV-GYPYLVLRMGLADPTHAGP-PHTP  364

Query  314  RRELSQVVE  322
            R  + QVV+
Sbjct  365  RLGVDQVVD  373


>gi|111017049|ref|YP_700021.1| hypothetical protein RHA1_ro00027 [Rhodococcus jostii RHA1]
 gi|110816579|gb|ABG91863.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=338

 Score =  167 bits (422),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 127/329 (39%), Positives = 163/329 (50%), Gaps = 12/329 (3%)

Query  1    MNTH----FPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDG  56
            MNT      PD  TV + + LA RAPS+HN+QPWRW V  T+L L+S PD  L +TD  G
Sbjct  1    MNTRAVPTVPDRRTVESAVALACRAPSLHNSQPWRW-VMGTALRLYSDPDRLLPATDGFG  59

Query  57   RELILSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPL-VPDQADVALAAA  115
            R++++SCG AL+H   A  +  W+  + R P   DR  L+TI   P   P      +A A
Sbjct  60   RQMVISCGAALNHLEYAFTANHWRLVIERLPHSSDRQLLSTINFIPAPAPTDFVARMAVA  119

Query  116  IPRRRTDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDR---MKAIVAQAVLDHVT  172
            I RRRT+R      P     +  +    A  GV L  +    R    +A      L H  
Sbjct  120  IGRRRTERLPMDPPPAWADTLEQLVRITAGTGVELEDLGQRSRPALEEASRRMTGLRH-D  178

Query  173  DEEYLRELTIWSGRYGSVAGVPARNEPPSDPSAPIPGRLFAGPGLSQPSDVLPADDGAAI  232
            D  Y  EL  WSGR     GVP +  P       +       PG +   D  P++D AAI
Sbjct  179  DPTYQAELRWWSGRGLFPDGVPEQARPSDRQQHSVHLSREFPPGRASTPDGGPSEDRAAI  238

Query  233  LALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGY  292
            L L T  D RL  LR+GE  S VLL  T  GL  CP+T   E A TR  +R E+    G 
Sbjct  239  LLLSTSADSRLDWLRSGEVLSAVLLACTDRGLGTCPVTHLTERAVTRTLLR-ELSSGEGM  297

Query  293  PQMLLRVGWAPINADPLPPTPRRELSQVV  321
            PQ+L+RVG      +P   TPRR LS+V+
Sbjct  298  PQVLIRVGAGTGVGEP-STTPRRPLSEVL  325


>gi|111017053|ref|YP_700025.1| hypothetical protein RHA1_ro00031 [Rhodococcus jostii RHA1]
 gi|110816583|gb|ABG91867.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=337

 Score =  163 bits (412),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 118/332 (36%), Positives = 165/332 (50%), Gaps = 23/332 (6%)

Query  1    MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTSLELFSRPDMQLRSTDPDGRELI  60
            +++  PD   VR  + LA RAPS+HN+QPW+W      L+L++     L STDP GR+L+
Sbjct  9    VDSTIPDENVVRIAVDLACRAPSVHNSQPWQWTYADGQLDLYTERGRLLASTDPSGRQLV  68

Query  61   LSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQPLV-PDQADVALAAAIPRR  119
            +SCG AL+H   AL  L W   + R P+     HLATI  +    P   D  L AAI  R
Sbjct  69   VSCGAALNHLETALTGLKWSVDIRRVPEGPHSGHLATIRFRHDARPQSHDFDLLAAIRHR  128

Query  120  RTDRRAYSCWPVPGGDIALMAARAARGGVMLRQVSALDRMKAIVAQAVLDHVT-------  172
             +DRR       P G +++          + R+V     + A  A+  L   T       
Sbjct  129  YSDRR-------PFGPVSMKTPLPPALTDVTRRVDVHLTLLAQDARPTLAKATELTAAAR  181

Query  173  --DEEYLRELTIWSGRYGSVAGVPARNEPPSDPSAPIP-GRLFAGPGLSQPSDVLPADDG  229
              D  Y  EL  W+G      G+PA +   ++    +  GR F      + +D  P  D 
Sbjct  182  KYDSAYQAELHWWAGHSIPQGGIPADSLATAENRDRVDIGRRFPA---GRDNDASPGIDR  238

Query  230  AAILALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGA  289
            + +L L T+TD R A LRAGEA S VLL AT  GLA CP+T   E+ ++R+ +R E+   
Sbjct  239  STVLVLSTDTDGREAWLRAGEALSAVLLEATVGGLATCPLTHMTELRQSREMIR-ELVPD  297

Query  290  GGYPQMLLRVGWAPINADPLPPTPRRELSQVV  321
             G+PQ L+RVG     + P   TPRR +  V 
Sbjct  298  RGFPQALIRVGTTEKKSPPR-QTPRRPVESVF  328



Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 592843174656


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40