BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3133c Length=217 Score E Sequences producing significant alignments: (Bits) Value gi|185177925|pdb|3C3W|A Chain A, Crystal Structure Of The Mycoba... 424 4e-117 gi|15610269|ref|NP_217649.1| two component transcriptional regul... 423 9e-117 gi|240168620|ref|ZP_04747279.1| two-component transcriptional re... 387 9e-106 gi|333991618|ref|YP_004524232.1| two-component transcriptional r... 382 1e-104 gi|118617914|ref|YP_906246.1| two component transcriptional regu... 382 2e-104 gi|183983463|ref|YP_001851754.1| two-component transcriptional r... 365 2e-99 gi|145224429|ref|YP_001135107.1| two component LuxR family trans... 364 4e-99 gi|315444762|ref|YP_004077641.1| response regulator containing a... 364 6e-99 gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Myco... 363 1e-98 gi|118466851|ref|YP_883258.1| DevR family transcriptional regula... 362 3e-98 gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response... 361 5e-98 gi|240171514|ref|ZP_04750173.1| two-component transcriptional re... 359 1e-97 gi|118472166|ref|YP_889490.1| DevR family transcriptional regula... 358 3e-97 gi|342861118|ref|ZP_08717767.1| hypothetical protein MCOL_19642 ... 355 2e-96 gi|108801090|ref|YP_641287.1| two component LuxR family transcri... 352 2e-95 gi|119870231|ref|YP_940183.1| two component LuxR family transcri... 352 2e-95 gi|120402438|ref|YP_952267.1| two component LuxR family transcri... 348 3e-94 gi|108798049|ref|YP_638246.1| two component LuxR family transcri... 332 2e-89 gi|120403536|ref|YP_953365.1| two component LuxR family transcri... 329 2e-88 gi|118468506|ref|YP_888233.1| two component transcriptional regu... 323 1e-86 gi|145226775|gb|ABP48141.1| putative two-component system respon... 321 5e-86 gi|111017070|ref|YP_700042.1| response regulator, two-component ... 318 3e-85 gi|226359606|ref|YP_002777384.1| two-component response regulato... 309 2e-82 gi|54023878|ref|YP_118120.1| putative two-component system respo... 308 4e-82 gi|169630970|ref|YP_001704619.1| LuxR family transcriptional reg... 308 5e-82 gi|326385152|ref|ZP_08206820.1| two-component transcriptional re... 306 1e-81 gi|258652221|ref|YP_003201377.1| LuxR family two component trans... 306 2e-81 gi|343925108|ref|ZP_08764640.1| two-component response regulator... 305 3e-81 gi|333921516|ref|YP_004495097.1| Response regulator, two-compone... 303 1e-80 gi|226306908|ref|YP_002766868.1| two-component response regulato... 299 2e-79 gi|317507621|ref|ZP_07965334.1| response regulator receiver doma... 299 2e-79 gi|317507118|ref|ZP_07964879.1| response regulator receiver doma... 296 2e-78 gi|302526808|ref|ZP_07279150.1| LuxR family transcriptional regu... 294 5e-78 gi|296394121|ref|YP_003659005.1| LuxR family two component trans... 293 8e-78 gi|296394763|ref|YP_003659647.1| LuxR family two component trans... 288 3e-76 gi|226361383|ref|YP_002779161.1| NarL family two-component respo... 287 6e-76 gi|312138551|ref|YP_004005887.1| luxr family two component syste... 287 9e-76 gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response... 286 1e-75 gi|111019249|ref|YP_702221.1| response regulator, two-component ... 286 2e-75 gi|54024864|ref|YP_119106.1| putative two-component system respo... 283 1e-74 gi|257056288|ref|YP_003134120.1| response regulator containing a... 282 3e-74 gi|300787440|ref|YP_003767731.1| two-component system response r... 280 1e-73 gi|256376044|ref|YP_003099704.1| LuxR family transcriptional reg... 279 2e-73 gi|229495080|ref|ZP_04388826.1| transcriptional regulator, LuxR ... 266 1e-69 gi|226307953|ref|YP_002767913.1| NarL family two-component respo... 265 3e-69 gi|290955012|ref|YP_003486194.1| LuxR family transcriptional reg... 263 1e-68 gi|345008024|ref|YP_004810378.1| LuxR family two component trans... 263 2e-68 gi|296271454|ref|YP_003654086.1| LuxR family two component trans... 260 1e-67 gi|291435532|ref|ZP_06574922.1| luxR family two-component respon... 260 1e-67 gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response... 259 2e-67 >gi|185177925|pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr gi|185177926|pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Response Regulator Dosr Length=225 Score = 424 bits (1091), Expect = 4e-117, Method: Compositional matrix adjust. Identities = 216/217 (99%), Positives = 217/217 (100%), Gaps = 0/217 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA Sbjct 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT Sbjct 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP 217 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP 217 >gi|15610269|ref|NP_217649.1| two component transcriptional regulatory protein DevR [Mycobacterium tuberculosis H37Rv] gi|15842706|ref|NP_337743.1| LuxR family DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|31794309|ref|NP_856802.1| two component transcriptional regulatory protein DevR [Mycobacterium bovis AF2122/97] 83 more sequence titles Length=217 Score = 423 bits (1087), Expect = 9e-117, Method: Compositional matrix adjust. Identities = 216/217 (99%), Positives = 217/217 (100%), Gaps = 0/217 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA Sbjct 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT Sbjct 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP 217 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDGP 217 >gi|240168620|ref|ZP_04747279.1| two-component transcriptional regulatory protein DevR [Mycobacterium kansasii ATCC 12478] Length=215 Score = 387 bits (993), Expect = 9e-106, Method: Compositional matrix adjust. Identities = 195/212 (92%), Positives = 205/212 (97%), Gaps = 0/212 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V VFLVDDHEVVRRGL+DLL ADP+L+VVGEAGSV EAMAR+PAA PDVAVLDVRLPDG Sbjct 1 MVTVFLVDDHEVVRRGLIDLLDADPQLEVVGEAGSVGEAMARIPAANPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSRMP+LRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVK+VGA Sbjct 61 NGIELCRDLLSRMPELRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKEVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALM+KLRG EK DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT Sbjct 121 GRSLLDNRAAAALMSKLRGGVEKPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRP 212 VKNYVSRLLAKLGMERRTQAAVFAT+L+RSRP Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFATQLQRSRP 212 >gi|333991618|ref|YP_004524232.1| two-component transcriptional regulatory protein DevR [Mycobacterium sp. JDM601] gi|333487586|gb|AEF36978.1| two-component transcriptional regulatory protein DevR [Mycobacterium sp. JDM601] Length=213 Score = 382 bits (982), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 193/211 (92%), Positives = 205/211 (98%), Gaps = 0/211 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V VFLVDDHEVVRRGL+DLLGADPELDVVGEAGSVAEA+AR+PA RPDVAVLDVRLPDG Sbjct 1 MVTVFLVDDHEVVRRGLIDLLGADPELDVVGEAGSVAEALARIPALRPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSRMP+LRCLILTS+TSDEAMLDAILAGASGY+VKDIKGMELARAVKDVGA Sbjct 61 NGIELCRDLLSRMPELRCLILTSFTSDEAMLDAILAGASGYIVKDIKGMELARAVKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALMAKLRGA K DPLSGL++QERTLL LL+EGLTNKQIADRMFLAEKT Sbjct 121 GRSLLDNRAAAALMAKLRGATAKPDPLSGLSEQERTLLSLLAEGLTNKQIADRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 VKNYVSRLLAKLGMERRTQAAVFAT+L+RSR Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFATKLERSR 211 >gi|118617914|ref|YP_906246.1| two component transcriptional regulatory protein DevR [Mycobacterium ulcerans Agy99] gi|183981531|ref|YP_001849822.1| two-component transcriptional regulatory protein DevR [Mycobacterium marinum M] gi|118570024|gb|ABL04775.1| two component transcriptional regulatory protein DevR [Mycobacterium ulcerans Agy99] gi|183174857|gb|ACC39967.1| two-component transcriptional regulatory protein DevR [Mycobacterium marinum M] Length=216 Score = 382 bits (980), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 192/214 (90%), Positives = 205/214 (96%), Gaps = 0/214 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V VFLVDDHEVVRRGL+DLL ADP+LDVVGEAGSV+EAMAR+PAA PDVAVLDVRLPDG Sbjct 1 MVTVFLVDDHEVVRRGLIDLLDADPQLDVVGEAGSVSEAMARIPAANPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 +GIELCRDLLSRMP+LRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARA+K+VGA Sbjct 61 DGIELCRDLLSRMPNLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAIKEVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALM++LRG E+ DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT Sbjct 121 GRSLLDNRAAAALMSRLRGVVERPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 VKNYVSRLLAKLGMERRTQAAVFA ELKR+R G Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFAAELKRARSAG 214 >gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length=217 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 182/216 (85%), Positives = 204/216 (95%), Gaps = 0/216 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGLVDLLG+DP+L+++GEAGSV+EAMAR+PA +PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLVDLLGSDPDLEIIGEAGSVSEAMARIPALQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLS +P+LRCL+LTS+TSDEAML+AILAGASGYVVKDIKGMELARA+KDVGA Sbjct 61 NGIELCRDLLSDLPELRCLMLTSFTSDEAMLEAILAGASGYVVKDIKGMELARAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALMAKLRG AE++DPLSGLT+QERTLLG LSEGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMAKLRGGAEQKDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDG 216 VKNYVSRLLAKLGMERRTQAAVFA+ L + P G Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASRLGQGTRPVQG 216 >gi|145224429|ref|YP_001135107.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145216915|gb|ABP46319.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] Length=216 Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 183/215 (86%), Positives = 199/215 (93%), Gaps = 0/215 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL+DLLG+DPELDVVGEAGSV+EA+ RVP A+PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLIDLLGSDPELDVVGEAGSVSEALTRVPTAQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+LLS MPDLRCL+LTS+TSDEAMLDAILAGASGYVVKDIKGMELARA+K+VG+ Sbjct 61 NGIELCRELLSLMPDLRCLMLTSFTSDEAMLDAILAGASGYVVKDIKGMELARAIKEVGS 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALMAKLRG E+ DPLSGLTDQER LL LL EGLTNKQIA RMFLAEKT Sbjct 121 GRSLLDNRAAAALMAKLRGEGERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGD 215 VKNYVSRLLAKLGMERRTQAAVF ++L R G+ Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFISKLDRGHGAGN 215 >gi|315444762|ref|YP_004077641.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|315263065|gb|ADT99806.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length=216 Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 183/214 (86%), Positives = 198/214 (93%), Gaps = 0/214 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL+DLLG+DPELDVVGEAGSV+EA+ RVP A+PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLIDLLGSDPELDVVGEAGSVSEALTRVPTAQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+LLS MPDLRCL+LTS+TSDEAMLDAILAGASGYVVKDIKGMELARA+K+VG+ Sbjct 61 NGIELCRELLSLMPDLRCLMLTSFTSDEAMLDAILAGASGYVVKDIKGMELARAIKEVGS 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALMAKLRG E+ DPLSGLTDQER LL LL EGLTNKQIA RMFLAEKT Sbjct 121 GRSLLDNRAAAALMAKLRGEGERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 VKNYVSRLLAKLGMERRTQAAVF ++L R G Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFISKLDRGHGAG 214 >gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459462|gb|EGO38402.1| response regulator with a CheY-like receiver domain and an HTH DNA-binding domain protein [Mycobacterium avium subsp. paratuberculosis S397] Length=222 Score = 363 bits (931), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 182/215 (85%), Positives = 202/215 (94%), Gaps = 2/215 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL DLL +DP+L +VGEAG+VAEA AR+PAARPDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLCDLLSSDPDLQIVGEAGTVAEAKARIPAARPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLS PDLRCL+LTS+TSDEAML+AILAGASG+V+KDIKGMELARA+KDVGA Sbjct 61 NGIELCRDLLSEHPDLRCLMLTSFTSDEAMLEAILAGASGFVIKDIKGMELARAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALMAKLRG+A + DPLSGLT+QERTLLGLLSEGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMAKLRGSAAQADPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRS--RPP 213 VKNYVSRLLAKLGMERRTQAAVFA++L + RPP Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASKLNQQAGRPP 215 >gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104] gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr [Mycobacterium avium subsp. avium ATCC 25291] gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr [Mycobacterium avium 104] Length=222 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 182/215 (85%), Positives = 202/215 (94%), Gaps = 2/215 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL DLL +DP+L +VGEAG+VAEA AR+PAARPDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLCDLLSSDPDLRIVGEAGTVAEAKARIPAARPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLS PDLRCL+LTS+TSDEAML+AILAGASG+V+KDIKGMELARA+KDVGA Sbjct 61 NGIELCRDLLSEHPDLRCLMLTSFTSDEAMLEAILAGASGFVIKDIKGMELARAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALMAKLRG+A + DPLSGLT+QERTLLGLLSEGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMAKLRGSAAQADPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRS--RPP 213 VKNYVSRLLAKLGMERRTQAAVFA++L + RPP Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASKLNQQAGRPP 215 >gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=223 Score = 361 bits (926), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 181/212 (86%), Positives = 202/212 (96%), Gaps = 1/212 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL DLL +DPEL++VGEAGSV+EA AR+PA +PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLADLLASDPELEIVGEAGSVSEAKARIPALQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDL+S PDLRCL+LTS+TSDEAML+AILAGASGYVVKDIKGMELA A+K+VGA Sbjct 61 NGIELCRDLVSDHPDLRCLMLTSFTSDEAMLEAILAGASGYVVKDIKGMELAHAIKEVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALMAKLRGAAE++DPLSGLT+QERTLLGLLSEGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMAKLRGAAEREDPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRP 212 VKNYVSRLLAKLGMERRTQAAVFA++L + RP Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASKLDQ-RP 211 >gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=218 Score = 359 bits (922), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 181/217 (84%), Positives = 201/217 (93%), Gaps = 1/217 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL DLL +DP+L++VGEAGSV+EAMA++PA +PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLTDLLASDPDLEIVGEAGSVSEAMAKIPALQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLS P+LRCL+LTS+TSDEAML+AILAGASG+VVKDIKGMELARA+KDVGA Sbjct 61 NGIELCRDLLSDQPELRCLMLTSFTSDEAMLEAILAGASGFVVKDIKGMELARAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALMAKLRG AE DPLSGLT+QERTLLG LSEGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMAKLRGGAEHHDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKR-SRPPGDG 216 VKNYVSRLLAKLGMERRTQAAVFA+ L + S PP G Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASRLGQGSAPPTPG 217 >gi|118472166|ref|YP_889490.1| DevR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173453|gb|ABK74349.1| two component transcriptional regulatory protein devr [Mycobacterium smegmatis str. MC2 155] Length=211 Score = 358 bits (920), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 177/209 (85%), Positives = 197/209 (95%), Gaps = 0/209 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +++VFLVDDHEVVRRGL+DLL ADPELDV+GEA SV++A+AR+PAA+PDVAVLDVRLPDG Sbjct 1 MIRVFLVDDHEVVRRGLIDLLSADPELDVIGEADSVSQALARIPAAQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLS MP+LRCL+LTS+TSDEAMLDAILAGASGYVVKDIKGMELA+A+KDVGA Sbjct 61 NGIELCRDLLSHMPNLRCLMLTSFTSDEAMLDAILAGASGYVVKDIKGMELAQAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAA ALM+KLRG AE+ DPLSGLT QER LL LL EGLTNKQIA RMFLAEKT Sbjct 121 GKSLLDNRAATALMSKLRGDAERSDPLSGLTQQERVLLDLLGEGLTNKQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKR 209 VKNYVSRLLAKLGMERRTQAAVFA++L R Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASKLDR 209 >gi|342861118|ref|ZP_08717767.1| hypothetical protein MCOL_19642 [Mycobacterium colombiense CECT 3035] gi|342131562|gb|EGT84832.1| hypothetical protein MCOL_19642 [Mycobacterium colombiense CECT 3035] Length=222 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 180/218 (83%), Positives = 200/218 (92%), Gaps = 1/218 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL DLL +DP+L +VGEAG+VAEA AR+PA +PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLADLLASDPDLQIVGEAGTVAEAKARIPALQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDL+S PDLRCL+LTS+TSDEAML+AILAGASG+VVKDIKGMELA A+K+VGA Sbjct 61 NGIELCRDLVSDHPDLRCLMLTSFTSDEAMLEAILAGASGFVVKDIKGMELAHAIKEVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALMAKLRGA DPLSGLT+QERTLLGLLSEGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMAKLRGATAHDDPLSGLTEQERTLLGLLSEGLTNRQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATEL-KRSRPPGDGP 217 VKNYVSRLLAKLGMERRTQAAVFA++L +RS PP P Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFASKLTQRSGPPSMPP 218 >gi|108801090|ref|YP_641287.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|108771509|gb|ABG10231.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] Length=220 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/214 (84%), Positives = 196/214 (92%), Gaps = 3/214 (1%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V+VFLVDDHEVVRRGL+DLL ADPELDVVGEA SVA A+AR+P +PDVAVLDVRLPDG Sbjct 6 MVRVFLVDDHEVVRRGLIDLLSADPELDVVGEADSVASALARIPTLQPDVAVLDVRLPDG 65 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSR+PDLRCL+LTS+TSDEAMLDAILAGASG+VVKDIKGMELA+A+KDVGA Sbjct 66 NGIELCRDLLSRLPDLRCLMLTSFTSDEAMLDAILAGASGFVVKDIKGMELAQAIKDVGA 125 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALM+KLRG E+ DPLSGL+ QER LL LL EGLTNKQIA RMFLAEKT Sbjct 126 GRSLLDNRAAAALMSKLRGDVERSDPLSGLSAQERVLLDLLGEGLTNKQIAARMFLAEKT 185 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 VKNYVSRLLAKLGMERRTQAAVF ++L R PG Sbjct 186 VKNYVSRLLAKLGMERRTQAAVFVSKLDR---PG 216 >gi|119870231|ref|YP_940183.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126436928|ref|YP_001072619.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|119696320|gb|ABL93393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126236728|gb|ABO00129.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length=215 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/214 (84%), Positives = 196/214 (92%), Gaps = 3/214 (1%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V+VFLVDDHEVVRRGL+DLL ADPELDVVGEA SVA A+AR+P +PDVAVLDVRLPDG Sbjct 1 MVRVFLVDDHEVVRRGLIDLLSADPELDVVGEADSVASALARIPTLQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSR+PDLRCL+LTS+TSDEAMLDAILAGASG+VVKDIKGMELA+A+KDVGA Sbjct 61 NGIELCRDLLSRLPDLRCLMLTSFTSDEAMLDAILAGASGFVVKDIKGMELAQAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALM+KLRG E+ DPLSGL+ QER LL LL EGLTNKQIA RMFLAEKT Sbjct 121 GRSLLDNRAAAALMSKLRGDVERSDPLSGLSAQERVLLDLLGEGLTNKQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 VKNYVSRLLAKLGMERRTQAAVF ++L R PG Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFVSKLDR---PG 211 >gi|120402438|ref|YP_952267.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955256|gb|ABM12261.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length=212 Score = 348 bits (893), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 174/210 (83%), Positives = 192/210 (92%), Gaps = 0/210 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V+VFLVDDHEVVRRGL+DLL DPELDVVGEAGSV+EA+ R+PA P+VAVLDVRLPDG Sbjct 1 MVRVFLVDDHEVVRRGLIDLLSTDPELDVVGEAGSVSEALTRIPAVAPEVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSR+P LRCL+LTS+TSDEAMLDAILAGASGYV+KDIKGMELA A+KDVGA Sbjct 61 NGIELCRDLLSRVPGLRCLMLTSFTSDEAMLDAILAGASGYVIKDIKGMELAEAIKDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALM++LR AE+ DPL GL+ QER LL LL EGLTNKQIADRMFLAEKT Sbjct 121 GRSLLDNRAAAALMSRLRDTAERADPLLGLSSQERVLLDLLGEGLTNKQIADRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRS 210 VKNYVSRLLAKLGMERRTQAAVF + L R+ Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFVSRLDRA 210 >gi|108798049|ref|YP_638246.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867144|ref|YP_937096.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433709|ref|YP_001069400.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108768468|gb|ABG07190.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693233|gb|ABL90306.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126233509|gb|ABN96909.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length=228 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 172/215 (80%), Positives = 197/215 (92%), Gaps = 0/215 (0%) Query 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGN 61 V VFLVDDHEVVRRGL+D+L A+P+L+V+GEAGSV+EA+AR+PA +P VAVLDVRLPDGN Sbjct 14 VTVFLVDDHEVVRRGLIDVLSAEPDLEVIGEAGSVSEALARIPALQPQVAVLDVRLPDGN 73 Query 62 GIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 GIELCRDLLSR+PDLRCL+LTS+TSDEAM+DAILAGASGYV+KDIKGMELA+A++++GAG Sbjct 74 GIELCRDLLSRLPDLRCLMLTSFTSDEAMIDAILAGASGYVIKDIKGMELAKAIREIGAG 133 Query 122 RSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181 RSLLDNRAAAALMAKLR A E DPLSGL+DQER LLGLL EGLTNKQIA RMFL+EKTV Sbjct 134 RSLLDNRAAAALMAKLRRATEHSDPLSGLSDQERVLLGLLGEGLTNKQIAARMFLSEKTV 193 Query 182 KNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDG 216 KNYVSRLLAKLG+ERRTQAAVF + L RS +G Sbjct 194 KNYVSRLLAKLGVERRTQAAVFVSRLDRSDGAAEG 228 >gi|120403536|ref|YP_953365.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956354|gb|ABM13359.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length=216 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 185/216 (86%), Positives = 204/216 (95%), Gaps = 1/216 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VKVFLVDDHEVVRRGL+DLL +DPELDVVGEAGSVAEA+AR+PA +PDVAVLDVRLPDG Sbjct 1 MVKVFLVDDHEVVRRGLIDLLSSDPELDVVGEAGSVAEALARIPALQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSR+PDLRCL+LTS+TSDEAMLDAILAGASGYVVKDIKGMELA+A+KDVG+ Sbjct 61 NGIELCRDLLSRLPDLRCLMLTSFTSDEAMLDAILAGASGYVVKDIKGMELAQAIKDVGS 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALMA+LRG E+ DPLSGLT+QER LLGLL EGLTNKQIA RMFLAEKT Sbjct 121 GRSLLDNRAAAALMARLRGEGERTDPLSGLTEQERVLLGLLGEGLTNKQIAARMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKR-SRPPGD 215 VKNYVSRLLAKLGMERRTQAAVF ++L+R RP G+ Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFVSKLERHHRPDGE 216 >gi|118468506|ref|YP_888233.1| two component transcriptional regulatory protein devr [Mycobacterium smegmatis str. MC2 155] gi|118169793|gb|ABK70689.1| two component transcriptional regulatory protein devr [Mycobacterium smegmatis str. MC2 155] Length=217 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 165/211 (79%), Positives = 190/211 (91%), Gaps = 0/211 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V VFLVDDHE+VRRGL+DL+ +DP+LDV+GEAGSV+EAMAR+PA RP+VAVLDVRLPDG Sbjct 1 MVTVFLVDDHELVRRGLIDLVRSDPDLDVIGEAGSVSEAMARIPALRPEVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSR+PDLRCL+LTS+TSDEA LDAILAGASG+V+KDIKGM+L A+K+V A Sbjct 61 NGIELCRDLLSRLPDLRCLMLTSFTSDEATLDAILAGASGFVIKDIKGMDLTHAIKEVAA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G SLLDNRAAAALM +LR A DPL+GL+DQER LL LL EGLTNKQIA+RMFLAE+T Sbjct 121 GHSLLDNRAAAALMKRLRETASHSDPLTGLSDQERMLLELLGEGLTNKQIAERMFLAERT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 VKNYVSRLLAKLGMERRTQAAVF ++L R Sbjct 181 VKNYVSRLLAKLGMERRTQAAVFISKLDHGR 211 >gi|145226775|gb|ABP48141.1| putative two-component system response regulator [Rhodococcus sp. DK17] Length=215 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 160/213 (76%), Positives = 185/213 (87%), Gaps = 1/213 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHEVVRRG+ DLL DPEL V+GEA S ++A+AR+PA PDVAVLDVRLPDG Sbjct 1 MINVFLVDDHEVVRRGVADLLTVDPELAVIGEAASYSQALARIPALIPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+LLSRMP L CL+LTSYT D+AMLDAILAGASGYVVKDI+GMEL AV +VGA Sbjct 61 NGIELCRELLSRMPGLHCLMLTSYTDDQAMLDAILAGASGYVVKDIRGMELTEAVHEVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQD-PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 G+SLLD+RAAAALMAKL A +D P +GLTDQ+RTLL LL EGLTN+QIA+RMFLAEK Sbjct 121 GKSLLDSRAAAALMAKLHSDAHAEDGPFAGLTDQQRTLLALLGEGLTNRQIAERMFLAEK 180 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELKRSRP 212 TVKNYVSRLL KLG+ERRTQAAV AT++ ++P Sbjct 181 TVKNYVSRLLTKLGVERRTQAAVLATKMPLNQP 213 >gi|111017070|ref|YP_700042.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816600|gb|ABG91884.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length=215 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 163/215 (76%), Positives = 187/215 (87%), Gaps = 2/215 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHEVVRRG+ DLL ADP+L VVGEA S ++AMARVPA +PDVAVLDVRLPDG Sbjct 1 MINVFLVDDHEVVRRGIADLLTADPDLTVVGEAASYSQAMARVPALKPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+L S MP+L CLILTS++ D+AMLDAILAGASGYVVKDI+GMEL RAV DVGA Sbjct 61 NGIELCRELHSLMPELHCLILTSFSDDQAMLDAILAGASGYVVKDIRGMELTRAVHDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSG-LTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 GRSLLD+RAAAALM K+R A ++D + G LT+QERTLL LL EGLTN+QIA RMFLAEK Sbjct 121 GRSLLDSRAAAALMVKVRANAGEKDGIFGHLTNQERTLLALLGEGLTNRQIAARMFLAEK 180 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 TVKNYVSRLL KLG+ERRTQAAV AT+++ SR G Sbjct 181 TVKNYVSRLLTKLGVERRTQAAVLATKMQ-SRQSG 214 >gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4] gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4] Length=215 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 158/214 (74%), Positives = 184/214 (86%), Gaps = 5/214 (2%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +++VFLVDDHEVVRRG+ DLL +DP L V+GEA S A+AMARVPA +PDVAVLDVRLPDG Sbjct 1 MIRVFLVDDHEVVRRGIADLLASDPALTVIGEAASYAQAMARVPALKPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+L S MPDL CLILTS+T ++AMLDAILAGASGYVVKDI+GMELA+AV DVGA Sbjct 61 NGIELCRELHSLMPDLHCLILTSFTDEQAMLDAILAGASGYVVKDIRGMELAQAVHDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPL-SGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 G+SLLD+RAA LM K+R A+ +D + + LT+QERTLL LL EGLTN+QIA RMFLAEK Sbjct 121 GKSLLDSRAAGVLMDKVRADADGKDGIFAHLTNQERTLLALLGEGLTNRQIAARMFLAEK 180 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELKRSRPP 213 TVKNYVSRLL KLG+ERRTQAAV AT++ PP Sbjct 181 TVKNYVSRLLTKLGVERRTQAAVLATKM----PP 210 >gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length=207 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 160/208 (77%), Positives = 178/208 (86%), Gaps = 3/208 (1%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHE+VRRGL+DLL +DP+L V+GEAG VA AMA + A RPDVAVLDVRLPDG Sbjct 1 MLSVFLVDDHEIVRRGLIDLLDSDPDLRVIGEAGDVANAMAGIRATRPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLL+ + L CLILTSYT + AMLDAILAGASGYVVKDIKGMELA A+K VGA Sbjct 61 NGIELCRDLLAELDGLHCLILTSYTDEHAMLDAILAGASGYVVKDIKGMELAEAIKAVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAA L A+LRGA + PL+ LT+QER LL LL EGLTN+QIA RMFLAEKT Sbjct 121 GRSLLDNRAAETLEARLRGA---EGPLADLTEQERKLLALLGEGLTNRQIAARMFLAEKT 177 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELK 208 VKNYVSRLLAKLGMERRTQAAV AT L+ Sbjct 178 VKNYVSRLLAKLGMERRTQAAVLATRLR 205 >gi|169630970|ref|YP_001704619.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242937|emb|CAM63965.1| Probable transcriptional regulator, LuxR family [Mycobacterium abscessus] Length=216 Score = 308 bits (788), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 150/209 (72%), Positives = 179/209 (86%), Gaps = 0/209 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHEVVRRGL DLL + + V+G+A SVAEAMAR+PA +PD+AVLD+RLPDG Sbjct 1 MITVFLVDDHEVVRRGLADLLEEEADFSVIGQASSVAEAMARIPALQPDIAVLDIRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCR+L S++P+L CL+LTS+T + AMLDAI+AGA GYV+KDIKGMEL AV+ VGA Sbjct 61 NGVELCRELRSKLPNLNCLMLTSFTDEHAMLDAIMAGAGGYVIKDIKGMELISAVRTVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLDNRAAAALM +LR AA+ PL+GLT QERTLL L+ EGLTN+QIA+RMFLAEKT Sbjct 121 GRSLLDNRAAAALMNRLRAAADNPSPLAGLTAQERTLLELIGEGLTNRQIAERMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKR 209 VKNYVSRLL KL +ERRTQ AV AT+L R Sbjct 181 VKNYVSRLLTKLDLERRTQVAVLATKLAR 209 >gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia neofelifaecis NRRL B-59395] gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia neofelifaecis NRRL B-59395] Length=217 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 152/208 (74%), Positives = 180/208 (87%), Gaps = 1/208 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 + VFLVDDHEVVRRGLV+LL DP+L V+GEAG+ + A+ARVPA RPDVAV+DVRLPDG Sbjct 2 MTTVFLVDDHEVVRRGLVELLEVDPDLSVIGEAGNCSHALARVPALRPDVAVIDVRLPDG 61 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 +GI+LCR+LL+++P LRCLILTS+T D+AMLDAI+AGASG+V+KDI GMELA+AV++VG Sbjct 62 SGIDLCRELLAKVPGLRCLILTSFTEDQAMLDAIMAGASGFVIKDITGMELAKAVREVGE 121 Query 121 GRSLLDNRAAAALMAKLRGAAEKQ-DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 G+SLLDNRAAA LM +LR E+ PL+ T QERTLL LL EGLTN+QIADRM LAEK Sbjct 122 GKSLLDNRAAAVLMERLRKQQEQDAGPLADFTQQERTLLALLGEGLTNRQIADRMHLAEK 181 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATEL 207 TVKNYVSRLL KLGMERRTQAAVFAT + Sbjct 182 TVKNYVSRLLTKLGMERRTQAAVFATRI 209 >gi|258652221|ref|YP_003201377.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555446|gb|ACV78388.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length=219 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/214 (71%), Positives = 182/214 (86%), Gaps = 0/214 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHEVVRRG+ D+L + +L VVG+AGSVAEA+AR+PA RPD+AVLD+RLPDG Sbjct 1 MLTVFLVDDHEVVRRGVGDMLDEEEDLTVVGQAGSVAEALARIPALRPDIAVLDMRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCR+L SRMP L CLILTSYT ++AMLDAILAGA GYV+KDIKGMEL AV+ VG+ Sbjct 61 NGVELCRELRSRMPTLNCLILTSYTDEQAMLDAILAGAGGYVIKDIKGMELVSAVRTVGS 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLD RAAAALM+K+R A+ PL+GLT+QER +L L+ +G+TN+QI +RMFLAEKT Sbjct 121 GRSLLDTRAAAALMSKIRAEAQDPGPLAGLTEQERVVLDLIGQGMTNRQIGERMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 VKNYVS +LAKLGM+RRTQ AV ATEL+ R G Sbjct 181 VKNYVSSVLAKLGMQRRTQVAVLATELRDQRQRG 214 >gi|343925108|ref|ZP_08764640.1| two-component response regulator DevR [Gordonia alkanivorans NBRC 16433] gi|343765039|dbj|GAA11566.1| two-component response regulator DevR [Gordonia alkanivorans NBRC 16433] Length=215 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 157/210 (75%), Positives = 178/210 (85%), Gaps = 1/210 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 + VFLVDDHE+VRRGLV+LL D + VVGEA + A+A+AR+P +PDVAVLDVRLPDG Sbjct 1 MFSVFLVDDHEIVRRGLVELLDHDDNVRVVGEAATCAQALARIPTVQPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCRDLLSR+ LRCLILTS T DEAM+DAILAGASGYV+KDI GMELARA+ DVGA Sbjct 61 NGIELCRDLLSRVDGLRCLILTSMTDDEAMMDAILAGASGYVIKDITGMELARAITDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQD-PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 GRSLLDNRAAAALM +LR EK++ P GL++QE TLL LL EGLTN+QIA RM LAEK Sbjct 121 GRSLLDNRAAAALMDRLRTQREKEEKPGDGLSEQESTLLALLGEGLTNRQIAARMHLAEK 180 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELKR 209 TVKNYVSRLL KLGMERRTQAAV+AT+ R Sbjct 181 TVKNYVSRLLGKLGMERRTQAAVYATKAAR 210 >gi|333921516|ref|YP_004495097.1| Response regulator, two-component system [Amycolicicoccus subflavus DQS3-9A1] gi|333483737|gb|AEF42297.1| Response regulator, two-component system [Amycolicicoccus subflavus DQS3-9A1] Length=215 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 153/209 (74%), Positives = 177/209 (85%), Gaps = 1/209 (0%) Query 4 VFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGI 63 VFLVDDHEVVRRGL DL+ ADP+L VVGEAGS +A+ARVPAA PDV VLDVRLPDGNGI Sbjct 4 VFLVDDHEVVRRGLADLISADPQLSVVGEAGSREQALARVPAAAPDVVVLDVRLPDGNGI 63 Query 64 ELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 ELCR+L S P CLILTS+T ++AM+DAILAGA+GYV+KDI+GM+L RA+ DV G+S Sbjct 64 ELCRELRSANPAQACLILTSFTDEQAMVDAILAGAAGYVIKDIRGMDLTRAIIDVATGKS 123 Query 124 LLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKN 183 LLDNRAAAALM KLR +++DP LT+QE TLL L+ EGLTN+QIA+RMFLAEKTVKN Sbjct 124 LLDNRAAAALMTKLRSGPDEKDPFPTLTEQEHTLLSLIGEGLTNRQIAERMFLAEKTVKN 183 Query 184 YVSRLLAKLGMERRTQAAVFATEL-KRSR 211 YVSRLLAKLG+ERRTQAA+ AT L KR R Sbjct 184 YVSRLLAKLGVERRTQAAILATRLDKRGR 212 >gi|226306908|ref|YP_002766868.1| two-component response regulator DevR [Rhodococcus erythropolis PR4] gi|226186025|dbj|BAH34129.1| two-component response regulator DevR [Rhodococcus erythropolis PR4] Length=215 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 162/210 (78%), Positives = 183/210 (88%), Gaps = 1/210 (0%) Query 4 VFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGI 63 VFLVDDHEVVRRGLV+LL DP L VVGEA + A AMAR+PA +PDVAVLDVRLPDGNGI Sbjct 4 VFLVDDHEVVRRGLVELLEGDPGLRVVGEASNYAHAMARIPALKPDVAVLDVRLPDGNGI 63 Query 64 ELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 ELCR+LLS++P LRCLILTS+ D+AMLDAILAGASGYVVKDIKG++LARAV+DVGAG+S Sbjct 64 ELCRELLSKLPALRCLILTSFEDDQAMLDAILAGASGYVVKDIKGLDLARAVRDVGAGKS 123 Query 124 LLDNRAAAALMAKLRG-AAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVK 182 LLDNRAAAALMAKLR AA+K P L+ QER LLGLL EGLTN+QIA RMFLAEKTVK Sbjct 124 LLDNRAAAALMAKLRTDAADKNGPFEELSQQERVLLGLLGEGLTNRQIAARMFLAEKTVK 183 Query 183 NYVSRLLAKLGMERRTQAAVFATELKRSRP 212 NYVSRLL+KLG+ERRTQAA+ AT++ P Sbjct 184 NYVSRLLSKLGVERRTQAAILATKMHEHLP 213 >gi|317507621|ref|ZP_07965334.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254098|gb|EFV13455.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length=218 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 152/218 (70%), Positives = 178/218 (82%), Gaps = 2/218 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHEVVRRG+ ++L D L VVG+A +VAEA+AR+PAARPDVAVLD+RLPDG Sbjct 1 MITVFLVDDHEVVRRGVAEMLEEDDGLTVVGQAATVAEALARIPAARPDVAVLDMRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+L S++P L CL+LTSYT + AMLDAILAGA GYV+KDIKGMEL AV+ VG+ Sbjct 61 NGIELCRELRSKLPGLHCLMLTSYTDEHAMLDAILAGAGGYVIKDIKGMELVAAVRAVGS 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLDNRAAAALM +LR A+ PL L+ QERTLL L+ EGLTN+QIA RMFLAEKT Sbjct 121 GKSLLDNRAAAALMHRLRTKAQGHSPLDALSAQERTLLDLIGEGLTNRQIAGRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATEL--KRSRPPGDG 216 VKNYVSRLLAKL +ERRTQAAV T L + R P G Sbjct 181 VKNYVSRLLAKLDVERRTQAAVLVTSLHAREGRSPSAG 218 >gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length=214 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 146/208 (71%), Positives = 176/208 (85%), Gaps = 0/208 (0%) Query 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGN 61 + VFLVDDHEVVRRG+ DLL +P+L VVGEAGS +A+AR+PAA PDVAVLDVRLPDGN Sbjct 7 ISVFLVDDHEVVRRGVADLLEQEPDLAVVGEAGSAEQALARIPAAAPDVAVLDVRLPDGN 66 Query 62 GIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 G+ELCR+L S++P+LRCL+LTS+T ++AM DAILAGA+GYV+KDIKGMEL AV+ VG+G Sbjct 67 GVELCRELRSKLPELRCLMLTSFTDEQAMTDAILAGAAGYVIKDIKGMELVSAVRAVGSG 126 Query 122 RSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTV 181 RSLLDNRAA AL+ +LR PL+ LT+QER LL L+ EGLTN+QIA+RMFLAEKTV Sbjct 127 RSLLDNRAAEALIRQLRAGTPDPGPLASLTEQERVLLDLIGEGLTNRQIAERMFLAEKTV 186 Query 182 KNYVSRLLAKLGMERRTQAAVFATELKR 209 +NYVS+LLAKLG+ERRTQAAV A R Sbjct 187 RNYVSKLLAKLGVERRTQAAVLAVRTVR 214 >gi|302526808|ref|ZP_07279150.1| LuxR family transcriptional regulator [Streptomyces sp. AA4] gi|302435703|gb|EFL07519.1| LuxR family transcriptional regulator [Streptomyces sp. AA4] Length=217 Score = 294 bits (753), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 158/216 (74%), Positives = 190/216 (88%), Gaps = 2/216 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +++VFLVDDHEVVRRG+ DLL DP++ VVG+AG VA+A+AR+PA RPDVAVLDVRLPDG Sbjct 1 MLRVFLVDDHEVVRRGVADLLEEDPDIAVVGQAGDVAQALARIPALRPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIEL R+L S PDL+CL+LTSYT ++AMLDA+LAGA+GYV+KDIKG++L AV+DVGA Sbjct 61 NGIELARELRSLSPDLKCLMLTSYTDEQAMLDAVLAGAAGYVIKDIKGLDLISAVRDVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQ-DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 G+SLLD AAAALM KLR +AEKQ PL+ L+DQERTLL L+ EGLTN+QI++RMFLAEK Sbjct 121 GKSLLDAHAAAALMTKLRDSAEKQRGPLAHLSDQERTLLALIGEGLTNRQISERMFLAEK 180 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELK-RSRPPG 214 TVKNYVSRLL KLG+ERRTQAAV ATEL+ R+R PG Sbjct 181 TVKNYVSRLLTKLGLERRTQAAVLATELRGRARRPG 216 >gi|296394121|ref|YP_003659005.1| LuxR family two component transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181268|gb|ADG98174.1| two component transcriptional regulator, LuxR family [Segniliparus rotundus DSM 44985] Length=213 Score = 293 bits (751), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 145/202 (72%), Positives = 174/202 (87%), Gaps = 0/202 (0%) Query 4 VFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGI 63 +FLVDDHEVVRRG+ DLL +P+L VVGEAGSVA+A+ARVPAA PDVAVLDVRLPDGNG+ Sbjct 1 MFLVDDHEVVRRGIADLLEQEPDLSVVGEAGSVAQALARVPAAAPDVAVLDVRLPDGNGV 60 Query 64 ELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 ELCR+L S++P + CL+LTS+T ++AM DAILAGA+GYV+KD+KGM+L AV+ VGAGRS Sbjct 61 ELCRELRSKLPQISCLMLTSFTDEQAMTDAILAGAAGYVIKDVKGMDLVAAVRAVGAGRS 120 Query 124 LLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKN 183 LLDNRAA AL+ +LR + PL+GLT+QER LL L+ EGLTN+QIA RMFLAEKTV+N Sbjct 121 LLDNRAAEALIRQLRAGKPEPGPLAGLTEQERVLLDLIGEGLTNRQIAQRMFLAEKTVRN 180 Query 184 YVSRLLAKLGMERRTQAAVFAT 205 YVSRLL KLG+ERRTQAAV A Sbjct 181 YVSRLLGKLGVERRTQAAVIAV 202 >gi|296394763|ref|YP_003659647.1| LuxR family two component transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181910|gb|ADG98816.1| two component transcriptional regulator, LuxR family [Segniliparus rotundus DSM 44985] Length=217 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 139/214 (65%), Positives = 170/214 (80%), Gaps = 0/214 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 ++ VFLVDDHE++RRG+ DLL L V+G+A +VAEA+ R+PA RPDVAVLDVRLPDG Sbjct 1 MITVFLVDDHEMIRRGVADLLEETEGLTVIGQASTVAEALTRIPALRPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCR L S +P+L CL+ TS+T + AMLDA++AGASGY +KDIKGMEL AV+ VGA Sbjct 61 NGVELCRGLRSTLPELHCLMFTSFTDEHAMLDAVMAGASGYAIKDIKGMELVSAVRSVGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 GRSLLD+R AL+ +LR AA+K PL LT+QER LL L+ EGLTN+QIA RMFLAEKT Sbjct 121 GRSLLDSRVTTALVNRLRAAADKHSPLVRLTEQERVLLDLIGEGLTNRQIAQRMFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 +KNYVSRLL KLG++RRTQAAV T+L P Sbjct 181 IKNYVSRLLTKLGLDRRTQAAVLVTKLHDESQPS 214 >gi|226361383|ref|YP_002779161.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226239868|dbj|BAH50216.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length=211 Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 141/211 (67%), Positives = 178/211 (85%), Gaps = 1/211 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VFLVDDHE+VRRGLVDLLG+ P+LDVVGEA SV EAMAR+P + DVAVLDVRLPDG Sbjct 2 TTRVFLVDDHEIVRRGLVDLLGSVPDLDVVGEAASVGEAMARIPGSGADVAVLDVRLPDG 61 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCRDL + +P+LRCL+LTSY+ DEA+ DAI+AGASG+V+K I G +L AV+ VG Sbjct 62 NGVELCRDLRAALPELRCLMLTSYSDDEALFDAIMAGASGFVLKQILGTDLVAAVRTVGE 121 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G SLLD+RA +ALM ++R +A + DPL+ L++QER + L+ EGLTN++IA+R+FLAEKT Sbjct 122 GGSLLDSRATSALMNRIR-SARRDDPLAQLSEQERAVFDLIGEGLTNREIAERLFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 +KNYVSRLL+KLGM+RRTQAAV ATEL+R Sbjct 181 IKNYVSRLLSKLGMQRRTQAAVLATELRRQH 211 >gi|312138551|ref|YP_004005887.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311887890|emb|CBH47202.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length=245 Score = 287 bits (734), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 141/211 (67%), Positives = 177/211 (84%), Gaps = 1/211 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 + +VFLVDDHE+VRRGLVDLLG+ P+L VVGEA SV EAMAR+P++ DVAVLDVRLPDG Sbjct 36 MTRVFLVDDHEIVRRGLVDLLGSAPDLTVVGEAASVGEAMARIPSSGADVAVLDVRLPDG 95 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCRDL + +PDLRCL+LTS+ DEA+ DA++AGASG+V+K I G +L AV+ VGA Sbjct 96 NGVELCRDLRTVLPDLRCLMLTSFADDEALFDAVMAGASGFVLKQILGTDLISAVRTVGA 155 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G SLLD+RA AALM ++R + DPL+ L+DQER + L+ +GLTN++IA+R+FLAEKT Sbjct 156 GGSLLDSRATAALMQRMR-SERTADPLAELSDQERAVFDLIGQGLTNREIAERLFLAEKT 214 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 +KNYVSRLLAKLGM+RRTQAAV ATEL+ R Sbjct 215 IKNYVSRLLAKLGMQRRTQAAVLATELRNKR 245 >gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552946|gb|EGD22629.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length=236 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 141/211 (67%), Positives = 177/211 (84%), Gaps = 1/211 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 + +VFLVDDHE+VRRGLVDLLG+ P+L VVGEA SV EAMAR+P++ DVAVLDVRLPDG Sbjct 27 MTRVFLVDDHEIVRRGLVDLLGSAPDLTVVGEAASVGEAMARIPSSGADVAVLDVRLPDG 86 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCRDL + +PDLRCL+LTS+ DEA+ DA++AGASG+V+K I G +L AV+ VGA Sbjct 87 NGVELCRDLRTVLPDLRCLMLTSFADDEALFDAVMAGASGFVLKQILGTDLISAVRTVGA 146 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G SLLD+RA AALM ++R + DPL+ L+DQER + L+ +GLTN++IA+R+FLAEKT Sbjct 147 GGSLLDSRATAALMQRMR-SERTADPLAELSDQERAVFDLIGQGLTNREIAERLFLAEKT 205 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 +KNYVSRLLAKLGM+RRTQAAV ATEL+ R Sbjct 206 IKNYVSRLLAKLGMQRRTQAAVLATELRNKR 236 >gi|111019249|ref|YP_702221.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110818779|gb|ABG94063.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length=211 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/211 (66%), Positives = 179/211 (85%), Gaps = 1/211 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +VFLVDDHE+VRRGLVDLLG+ P+L+VVGEA SV EAMAR+P + DVAVLDVRLPDG Sbjct 2 TTRVFLVDDHEIVRRGLVDLLGSVPDLEVVGEAASVGEAMARIPGSGADVAVLDVRLPDG 61 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCRDL + +P+L+CL+LTSY+ DEA+ DAI+AGASG+V+K I G +L AV+ VG Sbjct 62 NGVELCRDLRTALPELQCLMLTSYSDDEALFDAIMAGASGFVLKQILGTDLVAAVRTVGE 121 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G SLLD+RA +ALM ++R +A ++DPL+ L++QER + L+ EGLTN++IA+R+FLAEKT Sbjct 122 GGSLLDSRATSALMNRIR-SARREDPLAELSEQERAVFELIGEGLTNREIAERLFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 +KNYVSRLL+KLGM+RRTQAAV ATEL+ R Sbjct 181 IKNYVSRLLSKLGMQRRTQAAVLATELRNQR 211 >gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length=215 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 152/212 (72%), Positives = 179/212 (85%), Gaps = 1/212 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +V+VFLVDDH +VRRG+ DL+ A+ +++VVGEA A+A+AR+PA PDVAVLDVRLPDG Sbjct 1 MVRVFLVDDHAIVRRGVADLIDAEADMEVVGEAADAAQALARIPALDPDVAVLDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NGIELCR+LLSR LRCLILTS+T ++AMLDAILAGASGYVVKDI +L AV+ +GA Sbjct 61 NGIELCRELLSRDGKLRCLILTSFTDEQAMLDAILAGASGYVVKDIGTTDLVDAVRAIGA 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQD-PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 G+SLLDNRAAAALMAKLR AE PL+ LT+QERTLL LL EGLTN+QIA RMFLAEK Sbjct 121 GKSLLDNRAAAALMAKLRAEAEADTGPLAALTEQERTLLALLGEGLTNRQIAARMFLAEK 180 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 TVKNYVSRLL KLG+ERRTQAAV A +L++ R Sbjct 181 TVKNYVSRLLTKLGVERRTQAAVLAAKLEQPR 212 >gi|257056288|ref|YP_003134120.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586160|gb|ACU97293.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length=239 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/221 (62%), Positives = 177/221 (81%), Gaps = 4/221 (1%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 + VFLVDDHE+VRRGL DLL A+P++ +VGEA S EA+AR+P DVAVLDVRLPDG Sbjct 2 TISVFLVDDHEIVRRGLTDLLEAEPDMRIVGEAASAGEALARIPGTGADVAVLDVRLPDG 61 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCR+LLS +P LRCL+LTSY DEA+ +AI+AGASG+V+K + G +L AV+ VG+ Sbjct 62 NGVELCRELLSTVPGLRCLMLTSYADDEALFNAIMAGASGFVLKQVLGSDLVSAVRTVGS 121 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G SLLD++ +ALM ++R E+ DP+SGL++QER +L L+ EGLTN++IA R++LAEKT Sbjct 122 GGSLLDSKTTSALMNRIRREREESDPVSGLSEQERAVLDLIGEGLTNREIAARLYLAEKT 181 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRSR----PPGDGP 217 VKNYVSRLL KLGM+RRTQAAV ATEL++ + PP D P Sbjct 182 VKNYVSRLLGKLGMQRRTQAAVLATELRKQKHFRPPPPDSP 222 >gi|300787440|ref|YP_003767731.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796954|gb|ADJ47329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|340528956|gb|AEK44161.1| two-component system response regulator [Amycolatopsis mediterranei S699] Length=222 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 139/215 (65%), Positives = 179/215 (84%), Gaps = 1/215 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 V+ VFLVDDHE+VRRG+ +L+ +P+L VVG+A SVAEAMAR+PA RPDVAVLDVRLPDG Sbjct 7 VITVFLVDDHELVRRGVAELVDDEPDLTVVGQASSVAEAMARIPALRPDVAVLDVRLPDG 66 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 NG+ELCRDL + +P LRCL+LTS+T +++M++A+LAGA GYV+KD+KG++L A++ VG+ Sbjct 67 NGVELCRDLRTALPGLRCLMLTSFTDEDSMVEAVLAGAEGYVIKDVKGLQLVDAIRRVGS 126 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G +LLD RA AAL+++LR K PL+GL++QE LL LL E LTN+QIA+RMFLAEKT Sbjct 127 GETLLDARAVAALVSELRAKTGKPGPLAGLSEQELVLLDLLGESLTNRQIAERMFLAEKT 186 Query 181 VKNYVSRLLAKLGMERRTQAAVFATELKRS-RPPG 214 VKNYVSRLLAKLG+ERR+QAAV T + + R PG Sbjct 187 VKNYVSRLLAKLGLERRSQAAVLVTGIHDAERRPG 221 >gi|256376044|ref|YP_003099704.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920347|gb|ACU35858.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length=218 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/212 (67%), Positives = 178/212 (84%), Gaps = 1/212 (0%) Query 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNG 62 +VFLVDDHEVVR G+ +LL +D EL+VVGEAGSVAEA+ARVPA+ +VAVLDVRLPDGNG Sbjct 4 RVFLVDDHEVVRVGVRELLNSDDELEVVGEAGSVAEALARVPASGANVAVLDVRLPDGNG 63 Query 63 IELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 IELCR+L S MPDL+CL+LTS+T DEA+ DAI+AGASG+V+K I G +L AV+ V +G+ Sbjct 64 IELCRELKSLMPDLQCLMLTSFTDDEALFDAIMAGASGFVLKRILGTDLCTAVRTVASGQ 123 Query 123 SLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVK 182 SLLD R+ +AL+ ++R E+ DP+ LT+QERT+L L+ +G+TN+QIA+ MFLAEKTVK Sbjct 124 SLLDARSTSALLNRIRREREQGDPIRMLTEQERTVLDLIGQGMTNRQIAESMFLAEKTVK 183 Query 183 NYVSRLLAKLGMERRTQAAVFATELKRSRPPG 214 NYVS LLAKLG+ERRTQAAV A++L R RP G Sbjct 184 NYVSHLLAKLGLERRTQAAVLASKL-RKRPGG 214 >gi|229495080|ref|ZP_04388826.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|3319301|gb|AAC26219.1| CprR [Rhodococcus sp. NO1-1] gi|229318011|gb|EEN83886.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length=212 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/206 (66%), Positives = 166/206 (81%), Gaps = 1/206 (0%) Query 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNG 62 ++FLVDDHE+VRRGL DLLG + VVGEA SV EA+A VP + DVAVLDVRLPDGNG Sbjct 4 RIFLVDDHEIVRRGLFDLLGGVEDFVVVGEAASVGEALAAVPQSNADVAVLDVRLPDGNG 63 Query 63 IELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 +ELCR+L S +PDLRCL+LTSY DEA+LDAI+AGASG+V+K I G +L AV+ VG G Sbjct 64 VELCRELRSMLPDLRCLMLTSYADDEALLDAIMAGASGFVLKQILGTDLVAAVRTVGRGG 123 Query 123 SLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVK 182 SLLD+RA ALM ++R + DPL+ L+DQER + L+ EGLTN++I R+FLAEKTVK Sbjct 124 SLLDSRATEALMQRIR-SDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVK 182 Query 183 NYVSRLLAKLGMERRTQAAVFATELK 208 NYV+RLL+KLGM+RRTQAAV ATE++ Sbjct 183 NYVTRLLSKLGMQRRTQAAVLATEIR 208 >gi|226307953|ref|YP_002767913.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226187070|dbj|BAH35174.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length=212 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 133/206 (65%), Positives = 166/206 (81%), Gaps = 1/206 (0%) Query 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNG 62 ++FLVDDHE+VRRGL DLLG + VVGEA SV EA+A VP + DVAVLDVRLPDGNG Sbjct 4 RIFLVDDHEIVRRGLFDLLGGVEDFVVVGEAASVGEALAAVPQSNADVAVLDVRLPDGNG 63 Query 63 IELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 +ELCR+L S +P+LRCL+LTSY DEA+LDAI+AGASG+V+K I G +L AV+ VG G Sbjct 64 VELCRELRSMLPNLRCLMLTSYADDEALLDAIMAGASGFVLKQILGTDLVAAVRTVGRGG 123 Query 123 SLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVK 182 SLLD+RA ALM ++R + DPL+ L+DQER + L+ EGLTN++I R+FLAEKTVK Sbjct 124 SLLDSRATEALMQRIR-SDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVK 182 Query 183 NYVSRLLAKLGMERRTQAAVFATELK 208 NYV+RLL+KLGM+RRTQAAV ATE++ Sbjct 183 NYVTRLLSKLGMQRRTQAAVLATEIR 208 >gi|290955012|ref|YP_003486194.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces scabiei 87.22] Length=230 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/218 (62%), Positives = 175/218 (81%), Gaps = 7/218 (3%) Query 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGN 61 ++VFL+DDHEVVRRG+ DLL +P++ V GEAG+V +A+ RVPA RP VAVLDVRLPDG+ Sbjct 13 IRVFLLDDHEVVRRGVRDLLNDEPDISVTGEAGTVEQALVRVPALRPQVAVLDVRLPDGD 72 Query 62 GIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 GI +CR+L SRMP+L CL+LTS+ +EA+LD+I+AGASGYV+K I+G +L AV+ V AG Sbjct 73 GITVCRELRSRMPELACLMLTSFDDEEALLDSIMAGASGYVLKQIRGSDLVSAVRTVAAG 132 Query 122 RSLLDNRAAAALMAKLR-GAAEKQDP--LSGLTDQERTLLGLLSEGLTNKQIADRMFLAE 178 +SLLD A A LMA+LR G E+++P L GLT +ER +L L+ EGLTN+QI R+FLAE Sbjct 133 QSLLDPSATARLMARLRQGPQEEREPEALPGLTGREREILALIGEGLTNRQIGQRLFLAE 192 Query 179 KTVKNYVSRLLAKLGMERRTQAAVFATE----LKRSRP 212 KTVKN++SRLLAKLG+ERR QAAV AT+ L++ RP Sbjct 193 KTVKNHISRLLAKLGVERRVQAAVIATQAQDRLRQDRP 230 >gi|345008024|ref|YP_004810378.1| LuxR family two component transcriptional regulator [Streptomyces violaceusniger Tu 4113] gi|344034373|gb|AEM80098.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length=222 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/213 (61%), Positives = 175/213 (83%), Gaps = 2/213 (0%) Query 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGN 61 + +FLVDDHEVVRRG+ DLL ++P+++VVGEAG+ A+A+AR+PAARPDVAVLD+RLPD + Sbjct 7 IGIFLVDDHEVVRRGVRDLLASEPDMEVVGEAGTAADALARIPAARPDVAVLDIRLPDRS 66 Query 62 GIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 G+E+CR++ +R ++RC++LTS+ DEA+ DAI+AGASGYV+KDI+G EL AV+DV AG Sbjct 67 GVEVCREIRARDENIRCMMLTSFADDEALFDAIIAGASGYVLKDIRGAELLSAVRDVAAG 126 Query 122 RSLLDNRAAAALMAKLRG--AAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 RSLLD A A ++ +LRG AA+ D L+ LT+QER +L L+ EGLTN+ I +R+ LAEK Sbjct 127 RSLLDPVATARVLERLRGQTAAKPDDRLAALTEQERRILLLIGEGLTNRAIGERLHLAEK 186 Query 180 TVKNYVSRLLAKLGMERRTQAAVFATELKRSRP 212 T+KNYVS LLAKLGMERR+QAA + ++ ++P Sbjct 187 TIKNYVSSLLAKLGMERRSQAAAYVARMQATQP 219 >gi|296271454|ref|YP_003654086.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094241|gb|ADG90193.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length=213 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/199 (62%), Positives = 166/199 (84%), Gaps = 0/199 (0%) Query 1 VVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60 +++VFLVDDHEVVRRG+ LL A+P++++VGEAG+V A+ARVPA +PDVA+LDVRLPDG Sbjct 1 MIRVFLVDDHEVVRRGVAALLEAEPDIEIVGEAGTVESALARVPALKPDVAILDVRLPDG 60 Query 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 +G++LCRDL S++P+L CL+LTSY DEA+ +A++AGA+GYV+K I G +L AV+ V + Sbjct 61 SGVDLCRDLRSKLPNLACLMLTSYADDEALFNAVMAGAAGYVLKQIHGSDLVGAVRTVAS 120 Query 121 GRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKT 180 G+SLLD A+++ +LR A K+DPL+ L+DQER +L L+ EGLTN+QI +R+FLAEKT Sbjct 121 GQSLLDPATTASMLRRLREQAAKKDPLAALSDQERQILELIGEGLTNRQIGERLFLAEKT 180 Query 181 VKNYVSRLLAKLGMERRTQ 199 VKNYVS LL+KL M+RRTQ Sbjct 181 VKNYVSTLLSKLNMQRRTQ 199 >gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] Length=230 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 130/210 (62%), Positives = 169/210 (81%), Gaps = 3/210 (1%) Query 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGN 61 ++VFL+DDHEVVRRG+ DLL +P++ VVGEA +V +A+ARVPA RP VAVLDVRLPDG+ Sbjct 13 IRVFLLDDHEVVRRGVHDLLNDEPDISVVGEAATVEQALARVPALRPQVAVLDVRLPDGD 72 Query 62 GIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 G+ +CR+L S MP+L CL+LTS+ +EA+LD+I+AGASGYV+K I+G +L AV+ V G Sbjct 73 GVSVCRELRSGMPELACLMLTSFDDEEALLDSIMAGASGYVLKQIRGSDLVAAVRTVARG 132 Query 122 RSLLDNRAAAALMAKLRGAAEKQ---DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAE 178 +SLLD A LMA+LRG +K+ D L GLTD+ER +L L+ EGLTN+QI R++LAE Sbjct 133 QSLLDPSATTKLMARLRGGQQKEEEPDALPGLTDREREILALIGEGLTNRQIGQRLYLAE 192 Query 179 KTVKNYVSRLLAKLGMERRTQAAVFATELK 208 KTVKN++SRLLAKLG+ERR QAAV ATE + Sbjct 193 KTVKNHISRLLAKLGVERRIQAAVIATEAR 222 >gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length=230 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 131/218 (61%), Positives = 174/218 (80%), Gaps = 4/218 (1%) Query 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGN 61 ++VFL+DDHEVVRRG+ DLL + +++VVGEAG+V +A+ RVPA RPDVAVLDVRLPDG+ Sbjct 13 IRVFLLDDHEVVRRGVHDLLNDEADIEVVGEAGTVEQALVRVPALRPDVAVLDVRLPDGD 72 Query 62 GIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 G+ +CR+L SR+P+L CL+LTS+ +EA+LD+I+AGASGYV+K I+G +L AV+ V G Sbjct 73 GVTVCRELRSRLPELACLMLTSFDDEEALLDSIMAGASGYVLKQIQGSDLVSAVRTVARG 132 Query 122 RSLLDNRAAAALMAKLRGAAEKQ---DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAE 178 +SLLD A LMA+LRG +++ D L GLT++ER +L L+ EGLTN+QI R++LAE Sbjct 133 QSLLDPSATTKLMARLRGGQQQEEQPDALPGLTEREREILALIGEGLTNRQIGQRLYLAE 192 Query 179 KTVKNYVSRLLAKLGMERRTQAAVFATELKRSRPPGDG 216 KTVKN++SRLLAKLG+ERR QAAV AT+ R R GD Sbjct 193 KTVKNHISRLLAKLGVERRIQAAVIATQ-ARDRLRGDN 229 Lambda K H 0.318 0.136 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 263865364408 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40