BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3134c
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycob... 530 8e-149
gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513... 483 1e-134
gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 ... 336 2e-90
gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Myc... 335 4e-90
gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_0486... 319 2e-85
gi|339295968|gb|AEJ48079.1| hypothetical protein CCDC5079_2889 [... 259 3e-67
gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycoba... 258 8e-67
gi|336459367|gb|EGO38310.1| universal stress family protein [Myc... 228 5e-58
gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Myco... 226 2e-57
gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_174... 225 5e-57
gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 ... 206 4e-51
gi|120403537|ref|YP_953366.1| UspA domain-containing protein [My... 147 2e-33
gi|145224428|ref|YP_001135106.1| UspA domain-containing protein ... 145 5e-33
gi|120402393|ref|YP_952222.1| UspA domain-containing protein [My... 145 7e-33
gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycoba... 139 5e-31
gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycob... 138 7e-31
gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511... 137 2e-30
gi|118469548|ref|YP_889491.1| universal stress protein family pr... 137 2e-30
gi|315444761|ref|YP_004077640.1| universal stress protein UspA-l... 136 4e-30
gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [... 135 5e-30
gi|126436929|ref|YP_001072620.1| UspA domain-containing protein ... 130 2e-28
gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [My... 130 2e-28
gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycob... 125 5e-27
gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 ... 125 5e-27
gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [... 125 6e-27
gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691... 125 8e-27
gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycoba... 124 2e-26
gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [... 121 1e-25
gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [... 121 1e-25
gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycoba... 120 2e-25
gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycoba... 120 2e-25
gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_1951... 119 5e-25
gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 ... 118 1e-24
gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_1953... 115 6e-24
gi|120402398|ref|YP_952227.1| UspA domain-containing protein [My... 114 2e-23
gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [My... 112 7e-23
gi|126433737|ref|YP_001069428.1| UspA domain-containing protein ... 112 8e-23
gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 ... 109 5e-22
gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_1510... 109 5e-22
gi|315445924|ref|YP_004078803.1| universal stress family protein... 106 3e-21
gi|145225571|ref|YP_001136249.1| UspA domain-containing protein ... 106 4e-21
gi|126433721|ref|YP_001069412.1| UspA domain-containing protein ... 103 2e-20
gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [My... 103 3e-20
gi|315445920|ref|YP_004078799.1| universal stress protein UspA-l... 100 2e-19
gi|15609142|ref|NP_216521.1| hypothetical protein Rv2005c [Mycob... 100 2e-19
gi|145225567|ref|YP_001136245.1| UspA domain-containing protein ... 99.0 6e-19
gi|340627015|ref|YP_004745467.1| hypothetical protein MCAN_20251... 98.6 9e-19
gi|183983460|ref|YP_001851751.1| hypothetical protein MMAR_3477 ... 91.7 1e-16
gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [... 90.9 2e-16
gi|342859710|ref|ZP_08716363.1| hypothetical protein MCOL_12553 ... 90.5 2e-16
>gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycobacterium tuberculosis H37Rv]
gi|15842707|ref|NP_337744.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31794310|ref|NP_856803.1| hypothetical protein Mb3158c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=268
Score = 530 bits (1365), Expect = 8e-149, Method: Compositional matrix adjust.
Identities = 268/268 (100%), Positives = 268/268 (100%), Gaps = 0/268 (0%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA
Sbjct 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
Query 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGS 120
ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGS
Sbjct 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGS 120
Query 121 VAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVA 180
VAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVA
Sbjct 121 VAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVA 180
Query 181 VHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLF 240
VHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLF
Sbjct 181 VHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLF 240
Query 241 VADSHSAHELCGAYQPGCAVLTVRSANL 268
VADSHSAHELCGAYQPGCAVLTVRSANL
Sbjct 241 VADSHSAHELCGAYQPGCAVLTVRSANL 268
>gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=333
Score = 483 bits (1243), Expect = 1e-134, Method: Compositional matrix adjust.
Identities = 241/243 (99%), Positives = 242/243 (99%), Gaps = 0/243 (0%)
Query 26 WAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDASRKVEATGQPVKIETEV 85
W +DEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDASRKVEATGQPVKIETEV
Sbjct 91 WNLDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDASRKVEATGQPVKIETEV 150
Query 86 LCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAATLAGSALCPVAVIHPSPAEPAT 145
LCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAATLAGSALCPVAVIHPSPAEPAT
Sbjct 151 LCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAATLAGSALCPVAVIHPSPAEPAT 210
Query 146 TSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRL 205
TSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRL
Sbjct 211 TSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRL 270
Query 206 AHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPGCAVLTVRS 265
AHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPGCAVLTVRS
Sbjct 271 AHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPGCAVLTVRS 330
Query 266 ANL 268
ANL
Sbjct 331 ANL 333
>gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 [Mycobacterium marinum M]
gi|183174856|gb|ACC39966.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=264
Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/260 (68%), Positives = 206/260 (80%), Gaps = 3/260 (1%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDA 68
A+VVGIDGSRA+THAA+WAVDEAV+RDIP+RLVY+IDP+Q A+ G QSAARAAL D
Sbjct 8 AIVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYIIDPAQAPASDRDGRQSAARAALFDV 67
Query 69 SRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAATLAGS 128
R VEATGQPVKIETE+L GRPLTKL++ESR+A M+CVGS+GL+H R GSVA TLAGS
Sbjct 68 QRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGLNHARRGEGSVAGTLAGS 127
Query 129 ALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAETPD 188
ALCPVAVI SPA A +V VVAEVDNG VLRHAFEEARLR VPLRA++ A T
Sbjct 128 ALCPVAVIQ-SPAGAAGAPKVGEVVAEVDNGSVLRHAFEEARLRNVPLRAISSRVA-TGH 185
Query 189 DVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAH 248
E G+RLA L+RRL WTRLYP+VRV+ AI G ACR++AANAKP +L+V DSH+A
Sbjct 186 GSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAKPDELYVTDSHAA- 244
Query 249 ELCGAYQPGCAVLTVRSANL 268
++C Y GC+VLTVRS NL
Sbjct 245 QVCSVYGAGCSVLTVRSGNL 264
>gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Mycobacterium ulcerans Agy99]
gi|118570025|gb|ABL04776.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=264
Score = 335 bits (859), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/260 (68%), Positives = 205/260 (79%), Gaps = 3/260 (1%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDA 68
A+VVGIDGSRA+THAA+WAVDEAV+RDIP+RLVY+IDP+Q A G QS+ARAAL D
Sbjct 8 AIVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYIIDPAQAPAGDRDGRQSSARAALFDV 67
Query 69 SRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAATLAGS 128
R VEATGQPVKIETE+L GRPLTKL++ESR+A M+CVGS+GL+H R GSVA TLAGS
Sbjct 68 QRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGLNHARRGEGSVAGTLAGS 127
Query 129 ALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAETPD 188
ALCPVAVI SPA A +V VVAEVDNG VLRHAFEEARLR VPLRA++ A T
Sbjct 128 ALCPVAVIQ-SPAGAAGAPKVGEVVAEVDNGSVLRHAFEEARLRNVPLRAISSRVA-TDH 185
Query 189 DVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAH 248
E G+RLA L+RRL WTRLYP+VRV+ AI G ACR++AANAKP +L+V DSH+A
Sbjct 186 GSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAKPDELYVTDSHAA- 244
Query 249 ELCGAYQPGCAVLTVRSANL 268
++C Y GC+VLTVRS NL
Sbjct 245 QVCSVYGAGCSVLTVRSGNL 264
>gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_04860 [Mycobacterium kansasii ATCC
12478]
Length=266
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 177/269 (66%), Positives = 203/269 (76%), Gaps = 4/269 (1%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
MS+P A AVVVGIDGS+AAT AALWA+DEAV+RDIPLRLVYVIDP + S G G+
Sbjct 1 MSNPS-APAVVVGIDGSKAATQAALWAIDEAVSRDIPLRLVYVIDPLEPSGGGGRDGRQG 59
Query 61 -ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRG 119
A AAL D R VEATG PVK+ETEVL GRPLTKLM+ESRSA M+CVGS+GL+H R G
Sbjct 60 MAHAALFDVCRAVEATGHPVKVETEVLRGRPLTKLMEESRSAVMVCVGSIGLNHARRGEG 119
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAV 179
SVAATLAGSALCPVAVI P +VS VVAEV+NG VLRHAFEEARLRGV LRA+
Sbjct 120 SVAATLAGSALCPVAVIQVPPGG-VPVPKVSTVVAEVNNGSVLRHAFEEARLRGVALRAL 178
Query 180 AVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
+ +T D G+RLA LSRRLA WTRLYP+V+V+ I G ACR++AANAKP QL
Sbjct 179 SARMPDTAGDTGDGNRLAQAQLSRRLARWTRLYPDVKVESTIIRGHACRYIAANAKPDQL 238
Query 240 FVADSHSAHELCGAYQPGCAVLTVRSANL 268
+V DSH+A + C Y GC+VLTVRS NL
Sbjct 239 YVTDSHAA-QACNVYSAGCSVLTVRSGNL 266
>gi|339295968|gb|AEJ48079.1| hypothetical protein CCDC5079_2889 [Mycobacterium tuberculosis
CCDC5079]
Length=184
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA
Sbjct 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
Query 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGS 120
ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGS
Sbjct 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGS 120
Query 121 VAATLAGSALCP 132
VAATLAGSALCP
Sbjct 121 VAATLAGSALCP 132
>gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896111|gb|EFG75778.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=278
Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 150/269 (56%), Positives = 189/269 (71%), Gaps = 5/269 (1%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSA-AGEGGGQS 59
MS+ PA VVVG+DGS+AA AALWA+DEAV+RDIP+RLVYV+DP + + +
Sbjct 14 MSNSHPAPGVVVGVDGSKAAEQAALWAIDEAVSRDIPMRLVYVVDPRDAATPSACEARLA 73
Query 60 AARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRG 119
AAR AL DA R V+A G PVK+ET+++CGRPLTKL++ESRSAAM+C+GS+GL H R
Sbjct 74 AARTALADAHRAVDAAGAPVKVETDIVCGRPLTKLLEESRSAAMMCIGSIGLKHARHGAT 133
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAV 179
SVA LA SA CPVAVIH PA + +V +V+AEVDNGVVLRHAFEEARLRG LRA+
Sbjct 134 SVATALARSAGCPVAVIH-QPARRSAAPKVDSVLAEVDNGVVLRHAFEEARLRGAGLRAL 192
Query 180 AVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
V E D ++G+ A LSRRLA WTRLYP+VR + I GS ++L A+ + G L
Sbjct 193 WVCRGEDQRDADEGTSSARAQLSRRLARWTRLYPDVRAEPVIVRGSVQQYLRAHPEAGLL 252
Query 240 FVADSHSAHELCGAYQPGCAVLTVRSANL 268
V D H+ +LC G +VL +RS+NL
Sbjct 253 LVTDPHANDDLCNG---GHSVLAIRSSNL 278
>gi|336459367|gb|EGO38310.1| universal stress family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=252
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 145/269 (54%), Positives = 178/269 (67%), Gaps = 18/269 (6%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAA-GEGGGQS 59
MS PA A+VVG+DGSRAA HAA+WA+DEAV RDIPLRLVYVIDP G +
Sbjct 1 MSTAYPAPAIVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDPHGAPGGHGPDTRLA 60
Query 60 AARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRG 119
AARAAL DA R V+A QPVK+ETE+L G KL+++SRSA MLCVG +GL+H
Sbjct 61 AARAALDDAHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGLNHACHGGP 120
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAV 179
++A +L SALCPVAV+ +P+ PA ++VS VVAEVDNG VLRHAFEEARLRGV L AV
Sbjct 121 AIATSLVRSALCPVAVVQQAPSLPA-AARVSGVVAEVDNGTVLRHAFEEARLRGVGLCAV 179
Query 180 AVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
G+ A V L RRLA W RLYP+V+ + A+ G +HL A+ + G+L
Sbjct 180 -------------GNPSARVELERRLARWMRLYPDVQAESAVLTGGVEQHLRADHRAGRL 226
Query 240 FVADSHSAHELCGAYQPGCAVLTVRSANL 268
V D++ A LC A G +VL VR NL
Sbjct 227 LVTDAYRAEALCHA---GHSVLAVRCGNL 252
>gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464029|ref|YP_883163.1| hypothetical protein MAV_4010 [Mycobacterium avium 104]
gi|41398097|gb|AAS05727.1| hypothetical protein MAP_3179c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165316|gb|ABK66213.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=252
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/269 (54%), Positives = 178/269 (67%), Gaps = 18/269 (6%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAA-GEGGGQS 59
MS PA A+VVG+DGSRAA HAA+WA+DEAV RDIPLRLVYVIDP G +
Sbjct 1 MSTAYPAPAIVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDPHGAPGGHGPDTRLA 60
Query 60 AARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRG 119
AARAAL DA R V+A QPVK+ETE+L G KL+++SRSA MLCVG +GL+H
Sbjct 61 AARAALADAHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGLNHACHGGP 120
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAV 179
++A +L SALCPVAV+ +P+ PA ++VS VVAEVDNG VLRHAFEEARLRGV L AV
Sbjct 121 AIATSLVRSALCPVAVVQQAPSLPA-AARVSGVVAEVDNGTVLRHAFEEARLRGVGLCAV 179
Query 180 AVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
G+ A V L RRLA W RLYP+V+ + A+ G +HL A+ + G+L
Sbjct 180 -------------GNPSARVELERRLARWMRLYPDVQAESAVLTGGVEQHLRADHRAGRL 226
Query 240 FVADSHSAHELCGAYQPGCAVLTVRSANL 268
V D++ A LC A G +VL VR NL
Sbjct 227 LVTDAYRAEALCHA---GHSVLAVRCGNL 252
>gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_17439 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=257
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/274 (54%), Positives = 179/274 (66%), Gaps = 28/274 (10%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQS- 59
MS PA A+VVG+DGSRAA HAA+WA+DEAV RDIPLRLVYVIDP G GG
Sbjct 6 MSTAYPAPAIVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDPH-----GAPGGHEP 60
Query 60 -----AARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV 114
AARAAL DA R V+A QPVK+ETE+L G +L+++SRSA MLCVG +GL+H
Sbjct 61 DTRLAAARAALADAHRAVDAFAQPVKVETEILWGNTAFQLLEQSRSAVMLCVGQIGLNHA 120
Query 115 RGRRGSVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGV 174
++A +L SALCPVAV+ +P+ PA ++VS VVAEVDNG VLRHAFEEARLRGV
Sbjct 121 CHGGPAIATSLVRSALCPVAVVQQAPSLPA-AARVSGVVAEVDNGTVLRHAFEEARLRGV 179
Query 175 PLRAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANA 234
L AV G+ A V L RRLA W RLYP+V+ + A+ G +HL A+
Sbjct 180 GLCAV-------------GNPSARVELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH 226
Query 235 KPGQLFVADSHSAHELCGAYQPGCAVLTVRSANL 268
+ G+L V D++ A LC A G +VL VR NL
Sbjct 227 RAGRLLVTDAYRAEALCHA---GHSVLAVRCGNL 257
>gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT
3035]
gi|342131473|gb|EGT84743.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT
3035]
Length=241
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/245 (50%), Positives = 152/245 (63%), Gaps = 5/245 (2%)
Query 25 LWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDAS-RKVEATGQPVKIET 83
+WA+DEAV+RDIPLRLVYVID S G + A A + R V+A G+PVKIET
Sbjct 1 MWAIDEAVSRDIPLRLVYVIDSHDASGVRAGDTRLAVARAALADAHRAVDAAGEPVKIET 60
Query 84 EVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAATLAGSALCPVAVIHPSPAEP 143
E+L GR ++KL++ SRSA M+C+G +GL+H +VAA+L SALCPVAVI S P
Sbjct 61 EILWGRTVSKLLEASRSAVMVCIGQIGLNHACHGGPAVAASLVRSALCPVAVIQQSAGRP 120
Query 144 ATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSR 203
T ++S VV EVDNG VLRHAF+EARLR LRAV+V D G A L R
Sbjct 121 -TAPRISGVVTEVDNGTVLRHAFDEARLRRATLRAVSVSKVANVRDETPGKASAQGQLDR 179
Query 204 RLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPGCAVLTV 263
RLA W RLYP+V+ + I G R+L A+ GQL V DS+ A LC G +VL +
Sbjct 180 RLARWMRLYPDVQAEPVIVTGGVDRYLRAHHDAGQLLVTDSYRAEALC---HDGHSVLAI 236
Query 264 RSANL 268
R NL
Sbjct 237 RCGNL 241
>gi|120403537|ref|YP_953366.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119956355|gb|ABM13360.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=271
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/241 (42%), Positives = 135/241 (57%), Gaps = 13/241 (5%)
Query 6 PARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQ---LSAAGEGGGQSAAR 62
P+ +VVGIDGS A AALWA+++AV+ D+PLRLVYV+D + + + + A
Sbjct 4 PSACIVVGIDGSPAGVDAALWAIEQAVDHDMPLRLVYVVDAGEHGTVDPHDQARSIATAE 63
Query 63 AALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDH-VRGRRGSV 121
AL A VE+ +PVKIE E+L GRP+ L++ +RSAAMLC+G+ GL H +GR GS
Sbjct 64 VALRYALAAVESVERPVKIEVEILQGRPVQTLLEAARSAAMLCIGARGLKHSTQGRIGST 123
Query 122 AATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAV 181
A LA SALCPVA++ P + AVV E +G V++ EA+ R VP R V +
Sbjct 124 AVALATSALCPVAIVRSH--RPHRRDR--AVVIEFTDGAVMQRGLAEAKRRRVPAR-VLI 178
Query 182 HAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFV 241
A PD S RRLA W R YP+V + +LAA+ QL V
Sbjct 179 PARTHPDARSHAS----AAWERRLAEWQRSYPDVEIVPVSERIDTLDYLAAHGDDVQLVV 234
Query 242 A 242
A
Sbjct 235 A 235
>gi|145224428|ref|YP_001135106.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145216914|gb|ABP46318.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=274
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/240 (43%), Positives = 133/240 (56%), Gaps = 18/240 (7%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAA---GEGGGQSAARAALH 66
+VVGIDGS AA AALWAVD+AV+ DIPLRLVYVID A + + A A+
Sbjct 10 IVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADNEDAVDPHDQARQLATAEMAVR 69
Query 67 DASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDH-VRGRRGSVAATL 125
A +E+T QPVKIE E+L GRP+ L++ +RSA +LC+G+ GL H +GR GS A +
Sbjct 70 YALTALESTDQPVKIEVEILRGRPVQTLLEAARSAVLLCLGARGLKHSTQGRIGSTAGAV 129
Query 126 AGSALCPVAVIHPSPAEPATTSQVSAVVAEVDN---GVVLRHAFEEARLRGVPLRAVAVH 182
+ SA CPVAV+ P + V+ DN G VL +EAR RG P+R +
Sbjct 130 STSAHCPVAVVRAH--RPHRRPDRAVVIEITDNAGGGAVLERGLDEARRRGAPVRVLT-- 185
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA 242
+A + DV RRLA W R YP++ + A +LAA+ QL VA
Sbjct 186 SARSQLDVTG-------RWERRLAEWRRRYPDLDISAVRARDGLFDYLAAHGDGLQLLVA 238
>gi|120402393|ref|YP_952222.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955211|gb|ABM12216.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=280
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 105/245 (43%), Positives = 136/245 (56%), Gaps = 19/245 (7%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDA 68
AVVVGIDGSR AT AA+WA+DEA +RDIPLRLV+ + P+ A + + A + A
Sbjct 6 AVVVGIDGSRFATAAAIWAIDEAASRDIPLRLVHAVTPTD-GAHLDADDLARAGRVVQSA 64
Query 69 SRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSV---AATL 125
VEA G+PVK+ET++ GR L +SR AA+LCVGS GL H G G V AA +
Sbjct 65 VAAVEANGKPVKVETQITPGRAAHVLRSQSRDAALLCVGSSGLTH--GGSGPVDRTAAAV 122
Query 126 AGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNG----VVLRHAFEEARLRGVPLRAVAV 181
A +A CPVA+IH + T S+ VV EV++ +VLR EEA LRG LR VA
Sbjct 123 ALTASCPVAIIHSA----GTNSKPGWVVVEVNDSPAGELVLRTGVEEALLRGAALRVVAT 178
Query 182 HAAETPDDVEQG-----SRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKP 236
+ PD + G +R RRLA W +PE+ V GS +LA + P
Sbjct 179 WPSRYPDIHDDGAVANKNRSVKAQWERRLAPWRLRHPELEVHAVATPGSILNYLARHRDP 238
Query 237 GQLFV 241
L +
Sbjct 239 IGLAI 243
>gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896213|gb|EFG75875.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=272
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/250 (39%), Positives = 139/250 (56%), Gaps = 15/250 (6%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
M+D +++V G+DGS+AA AALWAVDEAV+R +PLRL++ DP GG++A
Sbjct 1 MADSVITQSIVAGVDGSKAAIRAALWAVDEAVSRGVPLRLLHATDPE--------GGEAA 52
Query 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVR-GRRG 119
A A+ A + ATG+PV++ETE+ G + L++ S SAAM+CVG+VGL H + GR G
Sbjct 53 AELAVRHAVTAIRATGKPVRVETEIAPGPAVGSLIRSSASAAMVCVGAVGLRHFQPGRVG 112
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVD---NGVVLRHAFEEARLRGVPL 176
S AA LA SA CPVA++ + E+D + V+L + EEA LR L
Sbjct 113 STAAALAISAHCPVAIVRGGDGR--RDHPEGKTIVEIDGSPDSVLLAASVEEALLRDAAL 170
Query 177 RAVAVHAAETPDDVE-QGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAK 235
+A+ A + + + R A L RRLA W R +P +RV+ + A +
Sbjct 171 QAIVSRRAGPAERGDTEADRRALADLDRRLARWKRRHPRLRVESVAVHAGLLDYPAGHRG 230
Query 236 PGQLFVADSH 245
P L + +H
Sbjct 231 PVGLVIVGAH 240
>gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycobacterium tuberculosis H37Rv]
gi|15841515|ref|NP_336552.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793210|ref|NP_855703.1| hypothetical protein Mb2053c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=279
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 110/265 (42%), Positives = 144/265 (55%), Gaps = 21/265 (7%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEG---GGQSAARAAL 65
++VVGIDGS+ A AALWAVDEA +RDIPLRL+Y I+P A G +AA A+
Sbjct 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
Query 66 HDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRR-GSVAAT 124
A VEA +PVK+E E+ RP+T L++ S +AA++CVG++G+ H R R GS AA
Sbjct 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
Query 125 LAGSALCPVAVIHPSPAEPATTSQVSAVVAE--VDNGVVLRHAFEEARLRGVPLRAVAVH 182
LA SA CPVA++ P + V A+ D GV+L EARLR P+R V
Sbjct 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
Query 183 AA---ETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
+ +T DDV L R LA W YP+VRV A G +LA + +
Sbjct 189 QSGVGDTGDDVRAS-------LDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHM 241
Query 240 FV---ADSHSAHELCGAYQPGCAVL 261
V +D +L GA PG AVL
Sbjct 242 VVLSASDQEHVEQLVGA--PGNAVL 264
>gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511 [Mycobacterium canettii CIPT
140010059]
gi|340005229|emb|CCC44383.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=279
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/265 (42%), Positives = 142/265 (54%), Gaps = 21/265 (7%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEG---GGQSAARAAL 65
++VVGIDGS+ A AALWAVDEA +RDIPLRL+Y I+P A G +AA A+
Sbjct 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
Query 66 HDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRR-GSVAAT 124
A VEA +PVK+E E+ RP+T L++ S +AA++CVG++G+ H R R GS AA
Sbjct 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERAGSTAAA 128
Query 125 LAGSALCPVAVI--HPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVH 182
LA SA CPVA++ H P V D GV+L EARLR P+R V
Sbjct 129 LALSAQCPVAIVRSHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
Query 183 AA---ETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
+ +T DDV L R LA W YP+VRV A G +LA + +
Sbjct 189 QSGVGDTGDDVRAS-------LDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHM 241
Query 240 FV---ADSHSAHELCGAYQPGCAVL 261
V +D +L GA PG AVL
Sbjct 242 VVVSASDQEHVEQLVGA--PGNAVL 264
>gi|118469548|ref|YP_889491.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170835|gb|ABK71731.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=280
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/277 (36%), Positives = 145/277 (53%), Gaps = 28/277 (10%)
Query 7 ARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARA--A 64
AR V+VGIDGS+ A AA+WAV EA++R +PLRL+Y + P A E ++ A A A
Sbjct 4 ARPVIVGIDGSQPAVDAAIWAVKEALSRGVPLRLIYAVHPDDNGADHENSARALATAEVA 63
Query 65 LHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV-RGRRGSVAA 123
+ A VE+T QPV+IE EV+ +P+ L+ S++ +LCVG+ GL RG GSVA+
Sbjct 64 IRQACVAVESTEQPVQIELEVVQDKPIEALIAASQNTPLLCVGASGLTQAGRGGIGSVAS 123
Query 124 TLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDN----GVVLRHAFEEARLRGVPLRAV 179
+ SA CPVAV+ AT + ++ E D L+ +EARLR PL +
Sbjct 124 AVLRSAQCPVAVV-------ATPGKGRRILVEFDGRPSASTALQTGVDEARLRDAPLSVM 176
Query 180 AV----HAAETPDDV-EQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANA 234
H + V E+ +RLA L RR+ + + YPE+ ++ G+ ++AAN
Sbjct 177 TTWQHRHRELYEEKVAEERNRLAQSQLDRRMTRYRKRYPELDLELITDHGNTADYVAANP 236
Query 235 KPGQLFVADSHSAHELCGAYQP---------GCAVLT 262
+ QL V + + P GC++LT
Sbjct 237 QTVQLIVVGAERFNRAGDVTDPAALGALVDAGCSLLT 273
>gi|315444761|ref|YP_004077640.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315263064|gb|ADT99805.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=274
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/237 (42%), Positives = 132/237 (56%), Gaps = 14/237 (5%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAA---GEGGGQSAARAALH 66
+VVGIDGS AA AALWAVD+AV+ DIPLRLVYVID + A + + A A+
Sbjct 10 IVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADEEGAVDPHDQARQLATAEMAVR 69
Query 67 DASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDH-VRGRRGSVAATL 125
A +E+T QPVKIE E+L GRP+ L++ +RSA ++C+G+ GL H +GR GS AA +
Sbjct 70 YALTALESTEQPVKIEVEILRGRPVQTLLEAARSAVLICLGARGLKHSTQGRIGSTAAAV 129
Query 126 AGSALCPVAVIHP-SPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAA 184
+ +A CPVAV+ P + V + VD G VL +EAR RG P+R + +A
Sbjct 130 SATAHCPVAVVRAHRPHRRPDRAVVIEITDNVDGGAVLERGLDEARRRGAPVRVLT--SA 187
Query 185 ETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFV 241
DV RRLA W YP++ + A +LAA+ QL V
Sbjct 188 RPQLDVT-------ARWERRLAEWRHRYPDLDISAVRARDGLFDYLAAHGDGLQLLV 237
>gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [Mycobacterium abscessus ATCC 19977]
gi|169242950|emb|CAM63978.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=285
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/270 (39%), Positives = 141/270 (53%), Gaps = 21/270 (7%)
Query 6 PARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAAL 65
P AV+VGIDGSR+A AALWAVDEA++R++PLRLV+V ++ + +S A A+
Sbjct 7 PGPAVLVGIDGSRSAVRAALWAVDEALHRELPLRLVHVTPQTEFPEFSD--ERSPAGTAV 64
Query 66 HDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRR-GSVAAT 124
A R++ AT +PVK+E E+ GR L+ SRSA MLCVG++G+ R+ GS AA
Sbjct 65 RHAFRQIGATHKPVKVEAEIRHGRVADVLLDASRSAVMLCVGAIGISGADTRKVGSTAAE 124
Query 125 LAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNG----VVLRHAFEEARLRGVPLRAVA 180
+ S CPVAVI +P++ SAVV E+D L A EARLR PLR +
Sbjct 125 VLRSVRCPVAVIRD---DPSSLRGTSAVVVEIDESHESVTPLELAAHEARLRAAPLRVLL 181
Query 181 VH------AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANA 234
H R+A VH+ RRLA YP++ + G +L +
Sbjct 182 RHRPISLSGQRVATLTRVDRRVAAVHVERRLAPLRVRYPDLDIRALDPVGGTLDYLERHG 241
Query 235 KPGQLFV---ADSHSAHELCGAYQPGCAVL 261
QL V D+ EL G GC VL
Sbjct 242 HTVQLVVVGAGDAAHVQELVGPN--GCGVL 269
>gi|126436929|ref|YP_001072620.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126236729|gb|ABO00130.1| UspA domain protein [Mycobacterium sp. JLS]
Length=261
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/264 (42%), Positives = 140/264 (54%), Gaps = 27/264 (10%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDAS 69
VVVGIDGSRAA AALWAVD AV RD PLRL+Y I+P+ A + A A+ D
Sbjct 7 VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAAAARELAIADLAVRDVF 66
Query 70 RKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGL-DHVRGRRGSVAATLAGS 128
++AT +PV+IE E++ + L SRSAA++CVG+VGL D + GR GS AATLA S
Sbjct 67 TAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPGRIGSTAATLARS 126
Query 129 ALCPVAVIHPSPAEPATTSQVSAVVAEV-DNGVVLRHAFEEARLRGVPLRAVAVHAAETP 187
A CPVA++ + T V A V + D+G VLRHA +EA LR VPLR + TP
Sbjct 127 AHCPVALVRHN-----TDGYVLAEVEDWSDSGAVLRHAVDEALLRRVPLRVL------TP 175
Query 188 DDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSA 247
GS A +R L W R +P++ +D + LA QL V + A
Sbjct 176 -----GSESARAPAARTLDGWRRRHPDLEIDLFTSDDGVVDFLAGEPGRVQLVVVGAERA 230
Query 248 HELCGAYQP---------GCAVLT 262
P GC +LT
Sbjct 231 RGPGEFTDPRGRSVLREAGCTLLT 254
>gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [Mycobacterium sp. MCS]
gi|119870232|ref|YP_940184.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108771510|gb|ABG10232.1| UspA [Mycobacterium sp. MCS]
gi|119696321|gb|ABL93394.1| UspA domain protein [Mycobacterium sp. KMS]
Length=261
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/264 (42%), Positives = 140/264 (54%), Gaps = 27/264 (10%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDAS 69
VVVGIDGSRAA AALWAVD AV RD PLRL+Y I+P+ A + A A+ D
Sbjct 7 VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAAAARELAIADLAVRDVF 66
Query 70 RKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGL-DHVRGRRGSVAATLAGS 128
++AT +PV+IE E++ + L SRSAA++CVG+VGL D + GR GS AATLA S
Sbjct 67 TAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPGRIGSTAATLARS 126
Query 129 ALCPVAVIHPSPAEPATTSQVSAVVAEV-DNGVVLRHAFEEARLRGVPLRAVAVHAAETP 187
A CPVA++ + T V A V + D+G VLRHA +EA LR VPLR + TP
Sbjct 127 AHCPVALVRHN-----TDGYVLAEVEDWSDSGAVLRHAVDEALLRRVPLRVL------TP 175
Query 188 DDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSA 247
GS A +R L W R +P++ +D + LA QL V + A
Sbjct 176 -----GSESARAPAARTLDGWRRRHPDLEIDLLTSDDGVVDFLAGEPGRVQLVVVGAERA 230
Query 248 HELCGAYQP---------GCAVLT 262
P GC +LT
Sbjct 231 RGPGEFTDPRGRSVLREAGCTLLT 254
>gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycobacterium tuberculosis H37Rv]
gi|15842164|ref|NP_337201.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793810|ref|NP_856303.1| hypothetical protein Mb2657c [Mycobacterium bovis AF2122/97]
44 more sequence titles
Length=272
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/271 (37%), Positives = 138/271 (51%), Gaps = 23/271 (8%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ ++VGIDGS AA AALW VDEA++R +PLRLV VI P+ S + A +L +
Sbjct 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 69
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
A VEA G+ VKIET++ G L++ SR A M+CVGSVG+ + GS A LA
Sbjct 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH 182
A CPVAV+ +PA S ++ +V + DN VL +A EA+LR P+ A+
Sbjct 130 EKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL--- 184
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA 242
P+++ + + RR+ W +P+VRV R LA + + QL V
Sbjct 185 -GGRPEELRE---IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
Query 243 DSHSAHELCGAYQPG---------CAVLTVR 264
A +L P C+VL VR
Sbjct 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVR 271
>gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 [Mycobacterium marinum M]
gi|183176790|gb|ACC41900.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=254
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/257 (38%), Positives = 129/257 (51%), Gaps = 29/257 (11%)
Query 7 ARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARA--A 64
A++VV GI+GS+AA +AA WAVDEA++R +PLRLVYVI PSQ + + RA A
Sbjct 6 AKSVVAGINGSQAAINAAKWAVDEAISRQLPLRLVYVI-PSQQTGSVHAPDWELERAERA 64
Query 65 LHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAA 123
L +A V++ G P+++ET V G P L+ ES+ A++CVG+ G G AA
Sbjct 65 LAEAEGAVQSDGHPIEVETVVRAGEPAQVLIDESQETALICVGTARRGPATDGLLGPTAA 124
Query 124 TLAGSALCPVAVIHPSPAEPATTSQVSAVVA--EVDNGVVLRHAFEEARLRGVPLRAVAV 181
L A CPVAVI +P T V AVV + DN V+ A EE R R +R
Sbjct 125 ALVRGAHCPVAVIRTNPDGSPTELGVIAVVLNDDADNDEVVHAAMEEGRRRHAVVR---- 180
Query 182 HAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFV 241
+ RRL W R YP+V V + +A G+ R + ++ L V
Sbjct 181 ------------------QIDRRLDSWVRRYPDVPV-QVVASGTGARSVENHSSAIDLAV 221
Query 242 ADSHSAHELCGAYQPGC 258
A EL G P C
Sbjct 222 VGEADADELPGLATPNC 238
>gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|308232192|ref|ZP_07415239.2| hypothetical protein TMAG_02433 [Mycobacterium tuberculosis SUMu001]
gi|308369803|ref|ZP_07419140.2| hypothetical protein TMBG_02762 [Mycobacterium tuberculosis SUMu002]
26 more sequence titles
Length=264
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/271 (37%), Positives = 138/271 (51%), Gaps = 23/271 (8%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ ++VGIDGS AA AALW VDEA++R +PLRLV VI P+ S + A +L +
Sbjct 2 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 61
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
A VEA G+ VKIET++ G L++ SR A M+CVGSVG+ + GS A LA
Sbjct 62 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 121
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH 182
A CPVAV+ +PA S ++ +V + DN VL +A EA+LR P+ A+
Sbjct 122 EKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL--- 176
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA 242
P+++ + + RR+ W +P+VRV R LA + + QL V
Sbjct 177 -GGRPEELRE---IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 232
Query 243 DSHSAHELCGAYQPG---------CAVLTVR 264
A +L P C+VL VR
Sbjct 233 GGGEAGQLARLVGPSGHPVFRHAECSVLVVR 263
>gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691 [Mycobacterium canettii CIPT
140010059]
gi|340005834|emb|CCC45000.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=272
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/271 (37%), Positives = 138/271 (51%), Gaps = 23/271 (8%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ ++VGIDGS AA AALW VDEA++R +PLRLV VI P+ S + A +L +
Sbjct 10 KPIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 69
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
A VEA G+ VKIET++ G L++ SR A M+CVGSVG+ + GS A LA
Sbjct 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRGAEMICVGSVGIGRYASSILGSTATELA 129
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH 182
A CPVAV+ +PA S ++ +V + DN VL +A EA+LR P+ A+
Sbjct 130 EKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL--- 184
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA 242
P+++ + + RR+ W +P+VRV R LA + + QL V
Sbjct 185 -GGRPEELRE---IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
Query 243 DSHSAHELCGAYQPG---------CAVLTVR 264
A +L P C+VL VR
Sbjct 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVR 271
>gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896219|gb|EFG75881.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=280
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/284 (40%), Positives = 145/284 (52%), Gaps = 32/284 (11%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQS- 59
M++P+ ++ +VVGIDGS AA +AA WA EAV+R++PLRL++ I + AGE G S
Sbjct 1 MNNPQSSQRIVVGIDGSDAAINAAKWAATEAVSRNVPLRLIHAIPERR---AGEAGDDSL 57
Query 60 ---AARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRG 116
A+++L A ++ATG PVK+E +V+ G L+ ESR AAM+CVGSVG V
Sbjct 58 DVEYAQSSLRAADAALQATGMPVKVECDVVRGSSEGALIDESRHAAMVCVGSVGTGWVAR 117
Query 117 R-RGSVAATLAGSALCPVAVIHPS-PAEPATTSQVSAVVAE-VDNGVVLRHAFEEARLRG 173
R GS A T+A A CPVAVI S A V+ V E N VL H F EARLR
Sbjct 118 RVLGSTADTVARRAHCPVAVIRSSRDAAEQDGGYVAVTVGESATNDAVLEHGFREARLRE 177
Query 174 VPLRAVAVH---AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHL 230
P+ A+ + E P + L RL W + EV V A A A L
Sbjct 178 APILALGIWRWGLGEIP----------YRQLEHRLGPWVSRHREVHVQPAAARRGAAEFL 227
Query 231 AANAKPGQLFVADSHSAHELCGAYQP---------GCAVLTVRS 265
+P QL V S A ++ P GC+VL VR
Sbjct 228 THTQEPVQLAVVGSEDADKVARMVGPITTHPGGHKGCSVLVVRD 271
>gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421234|gb|EFD18435.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=277
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/284 (35%), Positives = 138/284 (49%), Gaps = 36/284 (12%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ ++VGIDGS AA AALW VDEA++R +PLRLV VI P+ S + A +L +
Sbjct 2 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 61
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV------------- 114
A VEA G+ VKIET++ G L++ SR A M+CVGSVG+
Sbjct 62 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 121
Query 115 -RGRRGSVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEA 169
+ GS A LA A CPVAV+ +PA S ++ +V + DN VL +A EA
Sbjct 122 EKALLGSTATELAEKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREA 179
Query 170 RLRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRH 229
+LR P+ A+ P+++ + + RR+ W +P+VRV R
Sbjct 180 KLRQAPILAL----GGRPEELRE---IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARF 232
Query 230 LAANAKPGQLFVADSHSAHELCGAYQPG---------CAVLTVR 264
LA + + QL V A +L P C+VL VR
Sbjct 233 LADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR 276
>gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714319|gb|EFD78331.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=240
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/215 (40%), Positives = 117/215 (55%), Gaps = 14/215 (6%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ ++VGIDGS AA AALW VDEA++R +PLRLV VI P+ S + A +L +
Sbjct 2 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 61
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
A VEA G+ VKIET++ G L++ SR A M+CVGSVG+ + GS A LA
Sbjct 62 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 121
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH 182
A CPVAV+ +PA S ++ +V + DN VL +A EA+LR P+ A+
Sbjct 122 EKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 179
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRV 217
E+ + RR+ W +P+VRV
Sbjct 180 P-------EELREIPDGEFERRVQDWHHRHPDVRV 207
>gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896212|gb|EFG75874.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=256
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/261 (37%), Positives = 123/261 (48%), Gaps = 35/261 (13%)
Query 7 ARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVI---DPSQLSAAGEGGGQSAARA 63
A+AVVVG++GSRAA +AA WA+DEA+ R +PLRLVYVI + + A
Sbjct 6 AKAVVVGVNGSRAAVNAAKWAIDEAIARQLPLRLVYVIPRREKHREPATSSEWEVERGEI 65
Query 64 ALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVR-GRRGSVA 122
AL +A V++ +PV+IET + G P L+ +S AA++CVG+ G G A
Sbjct 66 ALAEAESAVQSERKPVEIETAIRSGAPGQALIDQSEDAALVCVGTARRGWASDGLLGPTA 125
Query 123 ATLAGSALCPVAVIHPSPAEPATTSQVSAVVA--EVDNGVVLRHAFEEARLRGVPLRAVA 180
L A CPVA+I P T V AVV E DN V+ A EE R R +R
Sbjct 126 TDLVARAHCPVAIIRTDPDGSPTGLGVIAVVLNDEPDNDEVVHQAMEEGRRRHATVR--- 182
Query 181 VHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPG--- 237
+ RRL W R YP+V V AG A + KPG
Sbjct 183 -------------------QIDRRLNSWVRRYPDVHVQTVAAGTGA----KPSGKPGGRI 219
Query 238 QLFVADSHSAHELCGAYQPGC 258
+L V S A E+ G P C
Sbjct 220 ELAVVGSADADEMAGLATPNC 240
>gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896267|gb|EFG75928.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=263
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/276 (36%), Positives = 136/276 (50%), Gaps = 33/276 (11%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ ++VGIDGS AA AALW VDEA++R +PLRL+ V+ P+ S + A +L +
Sbjct 2 KPILVGIDGSSAAVAAALWGVDEAISRGVPLRLISVVKPAHESPEDYERDVAHAEKSLLE 61
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
A VEATG+ V +ET V G L++ S A M+CVG VG+ + R GS A L
Sbjct 62 ARSAVEATGKAVTVETTVPRGPAGAVLLEASPDAEMICVGCVGIGRYARSIVGSTATELV 121
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEVD----NGVVLRHAFEEARLRGVPLRAVAVH 182
A CPVAV+ P ++ +V + N V++ A EA+LR P+ +
Sbjct 122 EKARCPVAVVRTGSDRP--PPDINWIVVRMTDAPGNDAVVKCAAAEAKLRNAPMLVLGGR 179
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRV-----DRAIAGGSACRHLAANAKPG 237
E+ + A RR+A W YPEVRV +AIAG +L+AN +
Sbjct 180 P-------EELTEHADGAFERRVAQWRERYPEVRVYPITTKQAIAG-----YLSANDERV 227
Query 238 QLFVADSHSAHELCGAY---------QPGCAVLTVR 264
QL V A++L P C+VL VR
Sbjct 228 QLAVIGGDEANQLAQLVGPQGHPLFRHPDCSVLVVR 263
>gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_19516 [Mycobacterium kansasii ATCC
12478]
Length=269
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/255 (39%), Positives = 128/255 (51%), Gaps = 11/255 (4%)
Query 6 PARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVI-DPSQLSAAGEGGGQSAARAA 64
P +VVGIDGS AA +AA WA+ EA++RDIPLRL++ I + + A E A A
Sbjct 4 PQSRIVVGIDGSDAAINAAKWAITEAISRDIPLRLIHAIPRGADVPAGDESLDVEYAEMA 63
Query 65 LHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV-RGRRGSVAA 123
LH A+ + A + VK+ETE++ G P L+ ESRSAAM+CVGSVG+ V R GS A
Sbjct 64 LHGAAAALHAMDEAVKVETEIVHGSPGGTLIDESRSAAMVCVGSVGIGRVARKLLGSTAE 123
Query 124 TLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVD--NGVVLRHAFEEARLRGVPLRAVAV 181
+A A CP AVI + S AVV E N VL F EA LRG P+ A+ V
Sbjct 124 AVARKARCPTAVIRTGHNDVVPDSAWIAVVVEDSPANDAVLEQGFREAHLRGAPILAMGV 183
Query 182 HAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFV 241
+ + L+RRL W Y ++ V A A L + QL V
Sbjct 184 WRWGL-------GEIRYEQLNRRLDRWVGQYRDLHVQPAAARHGVAEFLGRTEEAIQLAV 236
Query 242 ADSHSAHELCGAYQP 256
S A ++ P
Sbjct 237 VGSDDAGDVARMVGP 251
>gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 [Mycobacterium marinum M]
gi|183176787|gb|ACC41897.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=271
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/254 (38%), Positives = 128/254 (51%), Gaps = 11/254 (4%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
MS P+ R VV G+DGS+AA +AA WAV EA +R IPLRLV+ + S E
Sbjct 1 MSHPQAPRCVVAGVDGSQAAINAARWAVPEAASRGIPLRLVHAVPERAASTNDEAALDVE 60
Query 61 ARAALHDASRKVEATGQ-PVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV-RGRR 118
A A+ + PV++E +++ G L+ ES +AAM+CVGSVG+ V R
Sbjct 61 YAQAALHAASAALHAIEVPVEVEVDIVRGPAEAALVSESLTAAMVCVGSVGIGRVARKLL 120
Query 119 GSVAATLAGSALCPVAVIHPSP-AEPATTSQVSAVVAEV-DNGVVLRHAFEEARLRGVPL 176
GS A + A CP A+I P E + TS ++ VV + N VL H F EA+LRG P+
Sbjct 121 GSTAEAVTQRAHCPAAIIRTDPDTELSDTSWIAVVVDDSPGNDAVLEHGFREAQLRGAPI 180
Query 177 RAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKP 236
A+ V +A+ L RRL W Y +V V A A A LA +P
Sbjct 181 LAMGVWRWGL-------GEIAYEQLHRRLDRWVSRYRDVHVQPAAARHGAADFLAKTEEP 233
Query 237 GQLFVADSHSAHEL 250
QL V S A ++
Sbjct 234 IQLAVVGSDDAGDV 247
>gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_19531 [Mycobacterium kansasii ATCC
12478]
Length=256
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/284 (35%), Positives = 135/284 (48%), Gaps = 49/284 (17%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQL---SAAGEGGG 57
MS P P ++VVV ++GS+AA +AA WA++EA R +PLRLVYVI + + SA
Sbjct 1 MSQPDP-KSVVVAVNGSQAAVNAAKWAIEEARGRQLPLRLVYVIPAADVPGGSAQNSEWE 59
Query 58 QSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGR 117
A AL+ A ++ G+PV+ ET + G P L+ ES+ AA++CVG+ RGR
Sbjct 60 LERAERALYQADGAIQGEGRPVETETAIRSGDPAQVLIGESQDAALICVGTAR----RGR 115
Query 118 -----RGSVAATLAGSALCPVAVIHPSPAEPATTSQVSAVV--AEVDNGVVLRHAFEEAR 170
G AA L A CPVA++ +P T V AVV E DN V+ A EE R
Sbjct 116 AADGLLGPTAAALVTGAHCPVAIVRTNPDGSPTKLGVIAVVLNDEADNDEVVHQAMEEGR 175
Query 171 LRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAG---GSAC 227
R +R + RRL W R YP+V V AG +A
Sbjct 176 RRHATVR----------------------QIDRRLNSWVRRYPDVPVQIVAAGTGAKAAE 213
Query 228 RHLAA-------NAKPGQLFVADSHSAHELCGAYQPGCAVLTVR 264
RH +A QL + + H + G P C++L VR
Sbjct 214 RHGSAIDLAVVGETDAEQLPELATPNCHPILG--YPDCSILVVR 255
>gi|120402398|ref|YP_952227.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955216|gb|ABM12221.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=266
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/256 (40%), Positives = 124/256 (49%), Gaps = 15/256 (5%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDAS 69
V+ GIDGS A AALWAVDEA R P+ LVY P+ AA LH+A
Sbjct 10 VIAGIDGSATALAAALWAVDEAAGRGAPVHLVYTTKPTDRHAAEYAEDVRRGHECLHEAR 69
Query 70 RKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLAGS 128
VEATG+PV +ET V+ G L+ S A M+CVGSVG+ + R GS AA +A
Sbjct 70 SAVEATGKPVTVETTVVDGPAAQALISLSEQAQMVCVGSVGIGRYARSILGSTAAEVAER 129
Query 129 ALCPVAVIHPSP--AEPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAET 186
A CPVAVI P P E V AV + N V+ HA EA LR VP+ A+ E
Sbjct 130 AHCPVAVIRPHPHAGEHGFHWIVVAVTEQPQNAEVVEHALREAALRHVPVLALGDGRTED 189
Query 187 PDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRH-LAANAKPGQLFVADSH 245
D L R L W YP+V + IAG + H L + +P L V S
Sbjct 190 SADA----------LERHLRSWRERYPDVHI-YPIAGSADVTHFLKKHDEPVMLTVIGSD 238
Query 246 SAHELCGAYQPGCAVL 261
A E+ G ++L
Sbjct 239 EAGEVAKIIGHGHSLL 254
>gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [Mycobacterium sp. MCS]
gi|119867173|ref|YP_937125.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768496|gb|ABG07218.1| UspA [Mycobacterium sp. MCS]
gi|119693262|gb|ABL90335.1| UspA domain protein [Mycobacterium sp. KMS]
Length=299
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/240 (39%), Positives = 124/240 (52%), Gaps = 23/240 (9%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYV------IDPSQLSAAGE 54
M AR VVVG+DGS+AA A WAVDEAV R +PLRLV+ +D S E
Sbjct 29 MDTTELARPVVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLE 88
Query 55 GGGQSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV 114
+ A AL AS ++ G+ VK+ETE+L G P ++L+ ES A+M+C+GSVG+ +
Sbjct 89 ---REYAETALRAASAAAQSAGREVKVETEILWGSPDSELVTESHGASMVCIGSVGIGAI 145
Query 115 RG-RRGSVAATLAGSALCPVAVIHPSPAEPATTSQVS-AVVAEVDNGVVLRHAFEEARLR 172
GS A T++ A C VAV+ A PA V+ A D+ V+ A +EARLR
Sbjct 146 ANVLLGSTAVTVSMQAQCCVAVLRRG-ARPAPNGSVAVATDGTPDSDGVVIGALDEARLR 204
Query 173 GVPLRAVAVHAAET--PDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHL 230
G P+ V V E+ P ++ L RR A YP+VR G R+L
Sbjct 205 GCPVVVVGVRRWESHAP---------SYDELDRRTAQLADRYPDVRTKVVATDGGIVRYL 255
>gi|126433737|ref|YP_001069428.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233537|gb|ABN96937.1| UspA domain protein [Mycobacterium sp. JLS]
Length=299
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/238 (39%), Positives = 123/238 (52%), Gaps = 19/238 (7%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYV------IDPSQLSAAGE 54
M AR VVVG+DGS+AA A WAVDEAV R +PLRLV+ +D S E
Sbjct 29 MDTTELARPVVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLE 88
Query 55 GGGQSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV 114
+ A AL AS ++ G+ VK+ETE+L G P ++L+ ES A+M+CVGSVG+ +
Sbjct 89 ---REYAETALRAASAAAQSAGREVKLETEILWGSPDSELVTESHGASMVCVGSVGIGAI 145
Query 115 RG-RRGSVAATLAGSALCPVAVIHPSPAEPATTSQVS-AVVAEVDNGVVLRHAFEEARLR 172
GS A T++ A C VAV+ A PA V+ A D+ V+ A +EARLR
Sbjct 146 ANVLLGSTAVTVSMQAQCCVAVLRRG-ARPAPNGSVAVATDGTPDSDGVVIGALDEARLR 204
Query 173 GVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHL 230
G P+ V V E+ ++ L RR A YP+VR G R+L
Sbjct 205 GCPVVVVGVRRWES-------HAPSYDELDRRTAQLADRYPDVRTKVVATDGGIVRYL 255
>gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 [Mycobacterium marinum M]
gi|183175416|gb|ACC40526.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=264
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/271 (34%), Positives = 128/271 (48%), Gaps = 23/271 (8%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ V+VGIDGS A A LWA EAV+ +PLRL+ V+ + S + A +L
Sbjct 2 KPVIVGIDGSPAGITAVLWATAEAVSAGVPLRLISVLKTAHSSPEEYEHDLAHAETSLRA 61
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
A +EAT PVK+ET+ G L++ SR A ++CVGSVG+ + R GS A LA
Sbjct 62 AQSAIEATAAPVKVETDTPRGPAGAVLVEASRDAELVCVGSVGIGRYARAILGSTATELA 121
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH 182
A CPVAVI + +P ++ +V V DN V+ +A EARLR P+ A+
Sbjct 122 EKAHCPVAVIRSNSDQP--PPDINWIVVRVTDAPDNDAVIEYAAHEARLRQAPILALGGR 179
Query 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA 242
E D A RR+ W + + +V V R LA + + QL V
Sbjct 180 PEELTD-------AADGEFERRVQQWGQHHTDVHVYPITTQAGIARFLADHDERVQLAVI 232
Query 243 DSHSAHELCGAYQPG---------CAVLTVR 264
+ A ++ P C+VL VR
Sbjct 233 GADEADQVARLVGPSGHPIFRHAECSVLVVR 263
>gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_15100 [Mycobacterium kansasii ATCC
12478]
Length=264
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/275 (35%), Positives = 126/275 (46%), Gaps = 29/275 (10%)
Query 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
+ VVVG+DGS AA AALW DEA R +PLRL+ VI + S A +L
Sbjct 2 KPVVVGVDGSPAAITAALWGADEAHGRAVPLRLISVIKTTHPSPEDYERDLRHAETSLRA 61
Query 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGL-DHVRGRRGSVAATLA 126
A V ATG+ VK+ET+ G L++ SR A ++CVGS G+ + R GS A LA
Sbjct 62 AQVAVAATGKQVKVETDTPRGPAGAVLVEASRDAELVCVGSTGMRRYARSILGSTATELA 121
Query 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVA-- 180
A CPVAVI +P ++ +V + DN V+ HA EA LR P+ A+
Sbjct 122 EKAHCPVAVIRSDADQPPL--DINWIVVRMTDAPDNDAVVEHAAREAMLRQAPILALGGR 179
Query 181 -VHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
ETPD RR+ W + +P VRV R LA + + L
Sbjct 180 PEELTETPDG----------DFERRVHEWHQRHPGVRVYPVTTKAGIARFLAEHRERVLL 229
Query 240 FVADSHSAHELCGAY---------QPGCAVLTVRS 265
V + A +L P C+VL VR
Sbjct 230 AVIGAAEADQLVRLVGPSGHPVFRHPECSVLVVRD 264
>gi|315445924|ref|YP_004078803.1| universal stress family protein [Mycobacterium sp. Spyr1]
gi|315264227|gb|ADU00969.1| universal stress family protein [Mycobacterium sp. Spyr1]
Length=288
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/261 (39%), Positives = 132/261 (51%), Gaps = 20/261 (7%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEG--GGQSAARAA-- 64
AV+VG+DGS AA WAV EA +RD+PLRLV+ + +A G+G Q ARA
Sbjct 6 AVLVGVDGSATGAAAAAWAVKEAASRDLPLRLVHAV-----TATGDGRVDAQDLARAGRI 60
Query 65 LHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGR---RGSV 121
+H+A VEA G PV+IE++++CG L S AAMLC+G D GR R S
Sbjct 61 VHNAVTAVEALGAPVRIESQIICGATAPALSAASHDAAMLCLGFT--DGASGRHRARRST 118
Query 122 AATLAGSALCPVAVIHPSPA-EPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVA 180
AA +A SA CPVA+IHP+ P V+ A + A +EA LRG PLR VA
Sbjct 119 AAEIASSARCPVAIIHPAGNHSPGARWVVAESGASPSDDATSTRAVDEALLRGAPLRIVA 178
Query 181 VHAAETPD-----DVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAK 235
+ PD V + +RL R LA R +PE+ A GS +LA + K
Sbjct 179 AWPSRYPDMYDDHAVARKNRLVKARWERWLAPRRRQHPELDAHVTAAPGSILNYLARHRK 238
Query 236 PGQLFVADSHSAHELCGAYQP 256
+L V A ++ P
Sbjct 239 GIRLAVLSHERADDVAELLAP 259
>gi|145225571|ref|YP_001136249.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218057|gb|ABP47461.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=288
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 98/259 (38%), Positives = 131/259 (51%), Gaps = 16/259 (6%)
Query 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEG--GGQSAARAA-- 64
AV+VG+DGS AA WAV EA +RD+PLRLV+ + +A G+G Q ARA
Sbjct 6 AVLVGVDGSATGAAAAAWAVKEAASRDLPLRLVHAV-----TATGDGRVDAQDLARAGRI 60
Query 65 LHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGR-RGSVAA 123
+H+A VEA G PV+IE++++CG L S AAMLC+G R R R S AA
Sbjct 61 VHNAVTAVEALGAPVRIESQIICGATAPALSAASHDAAMLCLGFTNGASGRHRARRSTAA 120
Query 124 TLAGSALCPVAVIHPSPA-EPATTSQVSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVH 182
+A SA CPVA+IHP+ P V+ A + A +EA LRG PLR VA
Sbjct 121 EIASSARCPVAIIHPAANHSPGARWVVAEAGASPSDDATSTRAVDEALLRGAPLRIVAAW 180
Query 183 AAETPD-----DVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPG 237
+ PD V + +RL R LA R +P++ A GS +LA + K
Sbjct 181 PSRYPDMYDDHAVARKNRLVKARWERWLAPRRRQHPDLDAHVTAAPGSILNYLARHRKGI 240
Query 238 QLFVADSHSAHELCGAYQP 256
+L V A ++ P
Sbjct 241 RLAVLSHERADDVAELLAP 259
>gi|126433721|ref|YP_001069412.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233521|gb|ABN96921.1| UspA domain protein [Mycobacterium sp. JLS]
Length=279
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/257 (36%), Positives = 127/257 (50%), Gaps = 16/257 (6%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
MSD +V+VGIDGS AA AA WAV+EAV+R +PL L+ V+ SA
Sbjct 1 MSDAAQFSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEYQRELHH 60
Query 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRG 119
A +L A VEATG+PVK++T++ G+P L+ SR A ++CVGSVG+ + R G
Sbjct 61 ADVSLRAARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERSILG 120
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVP 175
S A LA A CPVAVI PS S + +VA D+ V+ A EARL
Sbjct 121 STATDLAEQAHCPVAVIRPS--HSGGPSDIHWIVAATNGTPDDEAVIEGAMREARL---- 174
Query 176 LRAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAK 235
R + P + G L R +A W + + +V + G + + +
Sbjct 175 RRLPVLLLGRQPRHGDGGDE-----LDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDE 229
Query 236 PGQLFVADSHSAHELCG 252
P ++ V + A EL G
Sbjct 230 PIEMAVVGAADAGELAG 246
>gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [Mycobacterium sp. MCS]
gi|119867156|ref|YP_937108.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768479|gb|ABG07201.1| UspA [Mycobacterium sp. MCS]
gi|119693245|gb|ABL90318.1| UspA domain protein [Mycobacterium sp. KMS]
Length=279
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/254 (36%), Positives = 123/254 (49%), Gaps = 10/254 (3%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSA 60
MSD +V+VGIDGS AA AA WAV+EAV+R +PL L+ V+ SA
Sbjct 1 MSDAAQFSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEYQRELHH 60
Query 61 ARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRG 119
A +L A VEATG+PVK++T++ G+P L+ SR A ++CVGSVG+ + R G
Sbjct 61 ADVSLRAARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERSILG 120
Query 120 SVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVAEVDNGVVLRHAFEEARLR-GVPLRA 178
S A LA A CPVAVI PS S + +VA NG A E +R R
Sbjct 121 STATDLAEQAHCPVAVIRPS--HSGGPSDIHWIVAAT-NGTPEDEAVIEGAMREARLRRL 177
Query 179 VAVHAAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQ 238
+ P G L R +A W + + +V + G + + +P +
Sbjct 178 PVLLLGRQPRHGNGGDE-----LDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIE 232
Query 239 LFVADSHSAHELCG 252
+ V + A EL G
Sbjct 233 MAVVGAADAGELAG 246
>gi|315445920|ref|YP_004078799.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315264223|gb|ADU00965.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=266
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/211 (42%), Positives = 111/211 (53%), Gaps = 13/211 (6%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDAS 69
VV GIDGS AA AALWAVDEA R LRLVYV PS SAA G R +L +A
Sbjct 10 VVAGIDGSAAALGAALWAVDEAAARGTTLRLVYVTKPSDRSAAEYAGDVRHGRQSLREAQ 69
Query 70 RKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLAGS 128
V++TG+ V +ETE++ G P L+ S +A MLCVGSVG+ + R GS AA +A +
Sbjct 70 VLVQSTGESVNVETEIVDGPPAQALVALSENAQMLCVGSVGIGRYARSILGSTAADVAAA 129
Query 129 ALCPVAVIHPSPAEPATTSQ--VSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAET 186
A CPVAVI P T + AV N V+ HA +EA LR P+ +
Sbjct 130 AHCPVAVIRPESRVGVDTPNWIIVAVNDRPHNDAVVEHALQEAALRHAPVLVLGDGRTAA 189
Query 187 PDDVEQGSRLAHVHLSRRLAHWTRLYPEVRV 217
+V L +R+ W YP+V V
Sbjct 190 SAEV----------LEQRIRPWHERYPQVHV 210
>gi|15609142|ref|NP_216521.1| hypothetical protein Rv2005c [Mycobacterium tuberculosis H37Rv]
gi|15841487|ref|NP_336524.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793185|ref|NP_855678.1| hypothetical protein Mb2028c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=295
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/276 (33%), Positives = 127/276 (47%), Gaps = 29/276 (10%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVID-----------PSQL 49
MS PR VVVG+DGS + AA W +A R+IPL +V+V++ P
Sbjct 1 MSKPRKQHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETW 60
Query 50 SAAGEGGGQSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSV 109
E G+ A+ A V A + + +++E++ P+ +++ S A M+ +GS
Sbjct 61 GVWQEDEGRQIVANAVKLAKEAVGAD-RKLSVKSELVFSTPVPTMVEISNEAEMVVLGSS 119
Query 110 GLDHV-RGRRGSVAATLAGSALCPVAVIH------PSPAE-PATTSQVSAVVAEVDNGVV 161
G + RG GSV+++L A CPVAVIH P P P + V+E+ V
Sbjct 120 GRGALARGLLGSVSSSLVRRAGCPVAVIHSDDAVIPDPQHAPVLVGIDGSPVSELATAV- 178
Query 162 LRHAFEEARLRGVPLRAV----AVHAAETPD-DVEQGSRLAHVHLSRRLAHWTRLYPEVR 216
AF+EA RGV L AV V E P D + A + L+ RLA W YP+V
Sbjct 179 ---AFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQQEAELSLAERLAGWQERYPDVP 235
Query 217 VDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCG 252
V R + R L + QL V SH L G
Sbjct 236 VSRVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTG 271
>gi|145225567|ref|YP_001136245.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218053|gb|ABP47457.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=266
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/211 (44%), Positives = 113/211 (54%), Gaps = 13/211 (6%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDAS 69
VV GIDGS AA AALWAVDEA R LRLVYV PS SAA G R +L +A
Sbjct 10 VVAGIDGSAAALGAALWAVDEAAARGATLRLVYVTKPSDRSAAEYAGDVRHGRQSLREAQ 69
Query 70 RKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLAGS 128
V++TG+ V +ETE++ G P L+ S A M+CVGSVG+ + R GS AA +A +
Sbjct 70 VLVQSTGESVNVETEIVDGPPAQALVALSEHAQMVCVGSVGIGRYARSILGSTAADVAAA 129
Query 129 ALCPVAVIHPSPAEPATTSQ--VSAVVAEVDNGVVLRHAFEEARLRGVPLRAVAVHAAET 186
A CPVAVI P T + AV NG V+ HA +EA LR HAA
Sbjct 130 ARCPVAVIRPESRVGVDTPNWIIVAVNDRPHNGAVVEHALQEAALR---------HAAVL 180
Query 187 PDDVEQGSRLAHVHLSRRLAHWTRLYPEVRV 217
+ + A V L +R+ W YP+V V
Sbjct 181 VLGDSRTAASAEV-LEQRIRPWHERYPQVHV 210
>gi|340627015|ref|YP_004745467.1| hypothetical protein MCAN_20251 [Mycobacterium canettii CIPT
140010059]
gi|340005205|emb|CCC44357.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=295
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 88/276 (32%), Positives = 126/276 (46%), Gaps = 29/276 (10%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVID-----------PSQL 49
MS PR +VVG+DGS + A W +A R+IPL +V+V++ P
Sbjct 1 MSKPRKQHGLVVGVDGSLESDAAVCWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETW 60
Query 50 SAAGEGGGQSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSV 109
E G+ A+ A V A + + +++E++ P+ +++ S A M+ +GS
Sbjct 61 GVWQEDEGRQIVANAVKLAKEAVGAD-RKLSVKSELVFSTPVPTMVEISNEAEMVVLGSS 119
Query 110 GLDHV-RGRRGSVAATLAGSALCPVAVIH------PSPAE-PATTSQVSAVVAEVDNGVV 161
G + RG GSV+++L A CPVAVIH P P P + V+E+ V
Sbjct 120 GRGALARGLLGSVSSSLVRRAGCPVAVIHSDGAVIPDPQHAPVLVGIDGSPVSELATAV- 178
Query 162 LRHAFEEARLRGVPLRAV----AVHAAETPD-DVEQGSRLAHVHLSRRLAHWTRLYPEVR 216
AF+EA RGV L AV V E P D + A + L+ RLA W YP+V
Sbjct 179 ---AFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQQEAELSLAERLAGWQERYPDVP 235
Query 217 VDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCG 252
V R + R L + QL V SH L G
Sbjct 236 VSRVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTG 271
>gi|183983460|ref|YP_001851751.1| hypothetical protein MMAR_3477 [Mycobacterium marinum M]
gi|183176786|gb|ACC41896.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=298
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/269 (33%), Positives = 126/269 (47%), Gaps = 26/269 (9%)
Query 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDP-----------SQL 49
MS P +VVG+DGS A+ A WA +A R +PL LV++++ + +
Sbjct 1 MSAPMKHLGIVVGVDGSAASYAAVSWAARDATLRHVPLTLVHMVNQAVPMWPEMPMMTSM 60
Query 50 SAAGEGGGQSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSV 109
SA E G+ A +++V G+ +I++E+ P+ ++ S+ A ++ VGS
Sbjct 61 SAWQEEDGRQVLEQA-GKIAQEVTQQGRDTQIKSELRWSAPVPTFVELSQEADLVVVGSH 119
Query 110 GLDHV-RGRRGSVAATLAGSALCPVAVIH---PSPAEPATTSQVSAVVAEVDNG----VV 161
G V RG GSV++ + A CPVAVI P +P + VV +D +
Sbjct 120 GRGAVARGLLGSVSSGVVHRAHCPVAVIRDEDPEAPQPEDRDRAPVVVG-IDGSSASELA 178
Query 162 LRHAFEEARLRGVPLRAV-AVHAAETPD----DVEQGSRLAHVHLSRRLAHWTRLYPEVR 216
AF+EA RGV L+AV A E D D A L+ RLA W YP+V
Sbjct 179 TAIAFDEASRRGVELKAVHAWSDLEVVDLPGLDWSTVKGEAEETLAERLAGWQERYPDVT 238
Query 217 VDRAIAGGSACRHLAANAKPGQLFVADSH 245
VDR + R L A+ QL V SH
Sbjct 239 VDRVVVCDRPARQLIDQAQTAQLVVLGSH 267
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/125 (31%), Positives = 59/125 (48%), Gaps = 16/125 (12%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVY------VIDPSQLSAAGEGGGQSAARA 63
VVVGIDGS A+ A A DEA R + L+ V+ V+D L + G A
Sbjct 165 VVVGIDGSSASELATAIAFDEASRRGVELKAVHAWSDLEVVDLPGLDWSTVKG---EAEE 221
Query 64 ALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRRGSVAA 123
L + + V ++ V+C RP +L+ ++++A ++ +GS G RG +
Sbjct 222 TLAERLAGWQERYPDVTVDRVVVCDRPARQLIDQAQTAQLVVLGSHG-------RGGFTS 274
Query 124 TLAGS 128
L GS
Sbjct 275 MLVGS 279
>gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544549|gb|EFD48197.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=235
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/243 (34%), Positives = 114/243 (47%), Gaps = 23/243 (9%)
Query 36 IPLRLVYVIDPSQLSAAGEGGGQSAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLM 95
+PLRLV VI P+ S + A +L +A VEA G+ VKIET++ G L+
Sbjct 1 MPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV 60
Query 96 QESRSAAMLCVGSVGLD-HVRGRRGSVAATLAGSALCPVAVIHPSPAEPATTSQVSAVVA 154
+ SR A M+CVGSVG+ + GS A LA A CPVAV+ +PA S ++ +V
Sbjct 61 EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPA--SDINWIVV 118
Query 155 EV----DNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVHLSRRLAHWTR 210
+ DN VL +A EA+LR P+ A+ E ++ G RR+ W
Sbjct 119 RMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL-REIPDGE------FERRVQDWHH 171
Query 211 LYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPG---------CAVL 261
+P+VRV R LA + + QL V A +L P C+VL
Sbjct 172 RHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVL 231
Query 262 TVR 264
VR
Sbjct 232 VVR 234
>gi|342859710|ref|ZP_08716363.1| hypothetical protein MCOL_12553 [Mycobacterium colombiense CECT
3035]
gi|342132842|gb|EGT86062.1| hypothetical protein MCOL_12553 [Mycobacterium colombiense CECT
3035]
Length=294
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/266 (35%), Positives = 123/266 (47%), Gaps = 26/266 (9%)
Query 10 VVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPS----QLSAAGE--GGGQSAARA 63
VVVG+DGS A+ A WA +A R++PL LV++++ + Q+ A E + R
Sbjct 10 VVVGVDGSPASNFAVCWAARDAALRNVPLTLVHMVNATTVWPQVPMAAEALAWQEDDGRR 69
Query 64 ALHDASRKVEA---TGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHV-RGRRG 119
L +A + E T + V I +E+ P L + S A M+ VGS G + R G
Sbjct 70 LLQEAVKIAEDATRTSRNVDIASELWHAPPAPTLARMSEEAVMVVVGSYGRGAIGRALLG 129
Query 120 SVAATLAGSALCPVAVIH-PSPAEPATTSQVSAVVAEVDNG----VVLRHAFEEARLRGV 174
SV++ + A CPVAVIH P P Q + V+ +D + AF+EA RGV
Sbjct 130 SVSSGIVRRASCPVAVIHDEDPLMP--YPQQAPVLVGIDGSPASELATTIAFDEASRRGV 187
Query 175 PLRAVAVHA------AETPD-DVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSAC 227
L AVHA E P D A LS RLA W YP+V V R +
Sbjct 188 ELN--AVHAWSDTGIFELPGVDRAAVKSEAERSLSERLAGWQERYPDVTVHRIVVSDRPA 245
Query 228 RHLAANAKPGQLFVADSHSAHELCGA 253
R L ++ QL V SH L GA
Sbjct 246 RQLVEQSETAQLTVVGSHGRGCLTGA 271
Lambda K H
0.318 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 410477079682
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40