BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3143 Length=133 Score E Sequences producing significant alignments: (Bits) Value gi|15610279|ref|NP_217659.1| response regulator [Mycobacterium t... 263 5e-69 gi|240169671|ref|ZP_04748330.1| putative response regulator [Myc... 234 4e-60 gi|183981501|ref|YP_001849792.1| two-component system response r... 234 5e-60 gi|342861051|ref|ZP_08717700.1| hypothetical protein MCOL_19307 ... 233 9e-60 gi|118617942|ref|YP_906274.1| two-component system response regu... 232 1e-59 gi|254821133|ref|ZP_05226134.1| hypothetical protein MintA_14447... 230 5e-59 gi|118464776|ref|YP_883184.1| two-component system response regu... 228 2e-58 gi|41409298|ref|NP_962134.1| hypothetical protein MAP3200 [Mycob... 228 2e-58 gi|296169193|ref|ZP_06850846.1| response regulator receiver prot... 227 4e-58 gi|254776454|ref|ZP_05217970.1| hypothetical protein MaviaA2_175... 226 7e-58 gi|145225059|ref|YP_001135737.1| response regulator receiver pro... 201 3e-50 gi|108798551|ref|YP_638748.1| response regulator receiver protei... 197 6e-49 gi|118469271|ref|YP_886425.1| two-component system response regu... 196 1e-48 gi|226365379|ref|YP_002783162.1| hypothetical protein ROP_59700 ... 195 1e-48 gi|120402884|ref|YP_952713.1| response regulator receiver protei... 194 3e-48 gi|333991498|ref|YP_004524112.1| two-component system response r... 194 3e-48 gi|111022871|ref|YP_705843.1| hypothetical protein RHA1_ro05908 ... 194 5e-48 gi|119717356|ref|YP_924321.1| hypothetical protein Noca_3132 [No... 193 9e-48 gi|54024637|ref|YP_118879.1| hypothetical protein nfa26680 [Noca... 189 2e-46 gi|229490889|ref|ZP_04384724.1| two-component system response re... 188 3e-46 gi|333922071|ref|YP_004495652.1| hypothetical protein AS9A_4419 ... 186 1e-45 gi|226306215|ref|YP_002766175.1| two-component response regulato... 183 6e-45 gi|325673386|ref|ZP_08153077.1| two component system response re... 180 7e-44 gi|312139308|ref|YP_004006644.1| two component system response r... 179 2e-43 gi|319950450|ref|ZP_08024364.1| two component system response re... 174 6e-42 gi|284030724|ref|YP_003380655.1| response regulator receiver pro... 172 1e-41 gi|326382768|ref|ZP_08204458.1| hypothetical protein SCNU_07513 ... 158 3e-37 gi|326333557|ref|ZP_08199797.1| two-component system response re... 158 3e-37 gi|311895598|dbj|BAJ28006.1| putative response regulator [Kitasa... 157 7e-37 gi|256390872|ref|YP_003112436.1| response regulator receiver pro... 153 8e-36 gi|262200421|ref|YP_003271629.1| hypothetical protein Gbro_0402 ... 153 1e-35 gi|291440114|ref|ZP_06579504.1| response regulator [Streptomyces... 152 1e-35 gi|169629219|ref|YP_001702868.1| response regulator [Mycobacteri... 150 6e-35 gi|297199130|ref|ZP_06916527.1| two-component system response re... 148 3e-34 gi|290961090|ref|YP_003492272.1| response regulator [Streptomyce... 147 5e-34 gi|333027725|ref|ZP_08455789.1| putative two-component system re... 147 6e-34 gi|254390608|ref|ZP_05005822.1| two-component system response re... 147 7e-34 gi|344999180|ref|YP_004802034.1| response regulator receiver pro... 146 9e-34 gi|302550861|ref|ZP_07303203.1| response regulator [Streptomyces... 146 1e-33 gi|297194818|ref|ZP_06912216.1| two-component system response re... 146 1e-33 gi|302518593|ref|ZP_07270935.1| two-component system response re... 146 1e-33 gi|318060650|ref|ZP_07979373.1| putative two-component system re... 145 1e-33 gi|302561059|ref|ZP_07313401.1| two-component system response re... 145 1e-33 gi|271964191|ref|YP_003338387.1| response regulator receiver pro... 145 3e-33 gi|302534027|ref|ZP_07286369.1| two-component system response re... 145 3e-33 gi|29832593|ref|NP_827227.1| two-component system response regul... 145 3e-33 gi|302546078|ref|ZP_07298420.1| two-component system response re... 144 4e-33 gi|320011222|gb|ADW06072.1| response regulator receiver [Strepto... 144 4e-33 gi|21220629|ref|NP_626408.1| response regulator [Streptomyces co... 144 4e-33 gi|254382660|ref|ZP_04998018.1| two-component system response re... 143 8e-33 >gi|15610279|ref|NP_217659.1| response regulator [Mycobacterium tuberculosis H37Rv] gi|15842719|ref|NP_337756.1| hypothetical protein MT3230 [Mycobacterium tuberculosis CDC1551] gi|31794319|ref|NP_856812.1| response regulator [Mycobacterium bovis AF2122/97] 81 more sequence titles Length=133 Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%) Query 1 VPDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDL 60 +PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDL Sbjct 1 MPDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDL 60 Query 61 AILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVL 120 AILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVL Sbjct 61 AILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVL 120 Query 121 GRTVLSLLRAPAH 133 GRTVLSLLRAPAH Sbjct 121 GRTVLSLLRAPAH 133 >gi|240169671|ref|ZP_04748330.1| putative response regulator [Mycobacterium kansasii ATCC 12478] Length=133 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/132 (86%), Positives = 125/132 (95%), Gaps = 0/132 (0%) Query 1 VPDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDL 60 +PDSS ALRILVYS+NVQTR++VMRALGKRLHPDLP+LTYVE+AT PMVI++MD GGIDL Sbjct 1 MPDSSDALRILVYSNNVQTRQQVMRALGKRLHPDLPELTYVEIATAPMVIQRMDEGGIDL 60 Query 61 AILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVL 120 AILDGEATP GGMGIAKQLKDEL++CPPILVLTGRPDD+WLASWSRAEAAV HP+DPIVL Sbjct 61 AILDGEATPAGGMGIAKQLKDELSTCPPILVLTGRPDDSWLASWSRAEAAVSHPIDPIVL 120 Query 121 GRTVLSLLRAPA 132 GRT L LLRAPA Sbjct 121 GRTALGLLRAPA 132 >gi|183981501|ref|YP_001849792.1| two-component system response regulator [Mycobacterium marinum M] gi|183174827|gb|ACC39937.1| two-component system response regulator [Mycobacterium marinum M] Length=149 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 116/132 (88%), Positives = 124/132 (94%), Gaps = 0/132 (0%) Query 1 VPDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDL 60 V DSS LRILVYSDNVQTRE+V+RALGKRLHPDLP LTYVEVATGPMV+R+MD GGIDL Sbjct 17 VADSSEDLRILVYSDNVQTREQVVRALGKRLHPDLPALTYVEVATGPMVLRRMDEGGIDL 76 Query 61 AILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVL 120 AILDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAEAAVPHP+DPIVL Sbjct 77 AILDGEATPTGGMGIAKQLKDELDNCPPLVVLTGRPDDAWLASWSRAEAAVPHPIDPIVL 136 Query 121 GRTVLSLLRAPA 132 GRTVL LLRAPA Sbjct 137 GRTVLGLLRAPA 148 >gi|342861051|ref|ZP_08717700.1| hypothetical protein MCOL_19307 [Mycobacterium colombiense CECT 3035] gi|342131495|gb|EGT84765.1| hypothetical protein MCOL_19307 [Mycobacterium colombiense CECT 3035] Length=137 Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 112/130 (87%), Positives = 122/130 (94%), Gaps = 0/130 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P SS ALRILVYS NVQTRERVMRALGK+LHPDLP+L+YVEVATGPMV+ MD+GGIDLA Sbjct 6 PQSSVALRILVYSSNVQTRERVMRALGKQLHPDLPELSYVEVATGPMVVATMDKGGIDLA 65 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAE AVPHP+DPI+LG Sbjct 66 ILDGEATPTGGMGIAKQLKDELENCPPLVVLTGRPDDAWLASWSRAEGAVPHPIDPILLG 125 Query 122 RTVLSLLRAP 131 RTVLSLLRAP Sbjct 126 RTVLSLLRAP 135 >gi|118617942|ref|YP_906274.1| two-component system response regulator [Mycobacterium ulcerans Agy99] gi|118570052|gb|ABL04803.1| two-component system response regulator [Mycobacterium ulcerans Agy99] Length=133 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/130 (89%), Positives = 123/130 (95%), Gaps = 0/130 (0%) Query 3 DSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAI 62 DSS LRILVYSDNVQTRE+V+RALGKRLHPDLP LTYVEVATGPMV+R+MD GGIDLAI Sbjct 3 DSSEDLRILVYSDNVQTREQVVRALGKRLHPDLPALTYVEVATGPMVLRRMDEGGIDLAI 62 Query 63 LDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGR 122 LDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAEAAVPHP+DPIVLGR Sbjct 63 LDGEATPTGGMGIAKQLKDELDNCPPLVVLTGRPDDAWLASWSRAEAAVPHPIDPIVLGR 122 Query 123 TVLSLLRAPA 132 TVL LLRAPA Sbjct 123 TVLGLLRAPA 132 >gi|254821133|ref|ZP_05226134.1| hypothetical protein MintA_14447 [Mycobacterium intracellulare ATCC 13950] Length=137 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 110/131 (84%), Positives = 121/131 (93%), Gaps = 0/131 (0%) Query 1 VPDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDL 60 +P SS ALRILVYS N QTRERVMRALGK+LHPDLP+L+YVEVATGPMV+R MD GGIDL Sbjct 5 LPQSSVALRILVYSSNAQTRERVMRALGKQLHPDLPELSYVEVATGPMVVRTMDEGGIDL 64 Query 61 AILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVL 120 AILDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAE AVPHP+DPI+L Sbjct 65 AILDGEATPTGGMGIAKQLKDELETCPPLVVLTGRPDDAWLASWSRAEGAVPHPIDPILL 124 Query 121 GRTVLSLLRAP 131 GRTVL+LLR P Sbjct 125 GRTVLNLLRTP 135 >gi|118464776|ref|YP_883184.1| two-component system response regulator [Mycobacterium avium 104] gi|118166063|gb|ABK66960.1| two-component system response regulator [Mycobacterium avium 104] Length=137 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/130 (84%), Positives = 121/130 (94%), Gaps = 0/130 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P SS ALRILVYS N QTRERVMRALG+ LHPDLP+L+YVEVATGPMV++ MD+GGIDLA Sbjct 6 PQSSVALRILVYSSNAQTRERVMRALGRHLHPDLPELSYVEVATGPMVVKTMDQGGIDLA 65 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAEAAVPHP+DPI+LG Sbjct 66 ILDGEATPTGGMGIAKQLKDELDACPPLVVLTGRPDDAWLASWSRAEAAVPHPIDPILLG 125 Query 122 RTVLSLLRAP 131 RTVL+LLR P Sbjct 126 RTVLNLLRTP 135 >gi|41409298|ref|NP_962134.1| hypothetical protein MAP3200 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398118|gb|AAS05748.1| hypothetical protein MAP_3200 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459347|gb|EGO38290.1| hypothetical protein MAPs_04460 [Mycobacterium avium subsp. paratuberculosis S397] Length=137 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/130 (84%), Positives = 121/130 (94%), Gaps = 0/130 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P SS ALRILVYS N QTRERVMRALG+ LHPDLP+L+YVEVATGPMV++ MD+GGIDLA Sbjct 6 PQSSVALRILVYSSNAQTRERVMRALGRHLHPDLPELSYVEVATGPMVVKTMDQGGIDLA 65 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAEAAVPHP+DPI+LG Sbjct 66 ILDGEATPTGGMGIAKQLKDELDTCPPLVVLTGRPDDAWLASWSRAEAAVPHPIDPILLG 125 Query 122 RTVLSLLRAP 131 RTVL+LLR P Sbjct 126 RTVLNLLRTP 135 >gi|296169193|ref|ZP_06850846.1| response regulator receiver protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896091|gb|EFG75758.1| response regulator receiver protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=137 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 109/130 (84%), Positives = 121/130 (94%), Gaps = 0/130 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P+SS ALRILVYSDN +TRE+V+RALG+ LHPDLP+LTYVEVAT PMV+++MD GGIDLA Sbjct 6 PESSVALRILVYSDNARTREQVIRALGRHLHPDLPELTYVEVATAPMVVQKMDEGGIDLA 65 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEATPTGGMGIAKQLKDEL +CPPILVLTGRPDD WLASWSRAEAAVPHP+DPI+LG Sbjct 66 ILDGEATPTGGMGIAKQLKDELTTCPPILVLTGRPDDAWLASWSRAEAAVPHPIDPILLG 125 Query 122 RTVLSLLRAP 131 RTVL LLR P Sbjct 126 RTVLGLLRTP 135 >gi|254776454|ref|ZP_05217970.1| hypothetical protein MaviaA2_17544 [Mycobacterium avium subsp. avium ATCC 25291] Length=137 Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 108/130 (84%), Positives = 120/130 (93%), Gaps = 0/130 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P SS ALRILVYS N QTRERVMRALG+ LHPDLP+L+YVEVAT PMV++ MD+GGIDLA Sbjct 6 PQSSVALRILVYSSNAQTRERVMRALGRHLHPDLPELSYVEVATAPMVVKTMDQGGIDLA 65 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEATPTGGMGIAKQLKDEL +CPP++VLTGRPDD WLASWSRAEAAVPHP+DPI+LG Sbjct 66 ILDGEATPTGGMGIAKQLKDELDTCPPLVVLTGRPDDAWLASWSRAEAAVPHPIDPILLG 125 Query 122 RTVLSLLRAP 131 RTVL+LLR P Sbjct 126 RTVLNLLRTP 135 >gi|145225059|ref|YP_001135737.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK] gi|315445428|ref|YP_004078307.1| hypothetical protein Mspyr1_38790 [Mycobacterium sp. Spyr1] gi|145217545|gb|ABP46949.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK] gi|315263731|gb|ADU00473.1| hypothetical protein Mspyr1_38790 [Mycobacterium sp. Spyr1] Length=136 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/134 (77%), Positives = 113/134 (85%), Gaps = 2/134 (1%) Query 1 VPDSST--ALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGI 58 VP + T LR+LVYSDN +TRE+V ALG+R+HP+LP+L YVEVATGPMV+RQMD GG Sbjct 3 VPSAETRGVLRVLVYSDNPRTREQVRLALGRRIHPELPELDYVEVATGPMVVRQMDAGGF 62 Query 59 DLAILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPI 118 DLAILDGEATP GGMGIAKQLKDEL CPPILVLTGRPDD WLA WSRAEAAVPHP+DPI Sbjct 63 DLAILDGEATPVGGMGIAKQLKDELDVCPPILVLTGRPDDAWLARWSRAEAAVPHPIDPI 122 Query 119 VLGRTVLSLLRAPA 132 LG V+SLLR A Sbjct 123 RLGDAVVSLLRPAA 136 >gi|108798551|ref|YP_638748.1| response regulator receiver protein [Mycobacterium sp. MCS] gi|119867650|ref|YP_937602.1| response regulator receiver protein [Mycobacterium sp. KMS] gi|126434149|ref|YP_001069840.1| response regulator receiver protein [Mycobacterium sp. JLS] gi|108768970|gb|ABG07692.1| response regulator receiver protein [Mycobacterium sp. MCS] gi|119693739|gb|ABL90812.1| response regulator receiver protein [Mycobacterium sp. KMS] gi|126233949|gb|ABN97349.1| response regulator receiver protein [Mycobacterium sp. JLS] Length=134 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 96/126 (77%), Positives = 108/126 (86%), Gaps = 0/126 (0%) Query 8 LRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEA 67 LRILVYSDN QTRE V ALGKR+HPDLP+L Y++VAT PMVI+Q+D GG DLAILDGEA Sbjct 8 LRILVYSDNPQTREAVRLALGKRIHPDLPELGYLDVATAPMVIKQLDAGGFDLAILDGEA 67 Query 68 TPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSL 127 TP GGMG+AKQ+KDE+A PPILVLTGRPDD WLA+WSRAEAAVPHP+DPI LG V+SL Sbjct 68 TPAGGMGVAKQIKDEIADAPPILVLTGRPDDAWLATWSRAEAAVPHPIDPIRLGDAVVSL 127 Query 128 LRAPAH 133 LR A Sbjct 128 LRLSAQ 133 >gi|118469271|ref|YP_886425.1| two-component system response regulator [Mycobacterium smegmatis str. MC2 155] gi|118170558|gb|ABK71454.1| two-component system response regulator [Mycobacterium smegmatis str. MC2 155] Length=132 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/129 (74%), Positives = 107/129 (83%), Gaps = 0/129 (0%) Query 5 STALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILD 64 S LRILVYSDN +TRE+V ALGKR+HP+LP++ YV+VAT PM I QMD GG DLAILD Sbjct 4 SAPLRILVYSDNPRTREQVRLALGKRIHPELPEIEYVDVATAPMAISQMDAGGFDLAILD 63 Query 65 GEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTV 124 GEATP GGMG+AKQ+KDE+ CPPILVLTGR DD WLA WSRAEAAVPHP+DPI L V Sbjct 64 GEATPAGGMGVAKQVKDEIDDCPPILVLTGRADDAWLAKWSRAEAAVPHPIDPIRLSDAV 123 Query 125 LSLLRAPAH 133 +SLLRAPA Sbjct 124 VSLLRAPAQ 132 >gi|226365379|ref|YP_002783162.1| hypothetical protein ROP_59700 [Rhodococcus opacus B4] gi|226243869|dbj|BAH54217.1| hypothetical protein [Rhodococcus opacus B4] Length=140 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 94/122 (78%), Positives = 107/122 (88%), Gaps = 0/122 (0%) Query 8 LRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEA 67 LR+LVYSD+ TR++V+ ALGKR HPDLP+L YVEVAT P+VIR+MD GGIDLAILDGEA Sbjct 14 LRVLVYSDDANTRQKVVLALGKRPHPDLPELEYVEVATAPVVIREMDAGGIDLAILDGEA 73 Query 68 TPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSL 127 P GGMGIAKQLKDE+ +CPPILVLTGRPDD WLASWSRAEAAVPHP+DPI L V++L Sbjct 74 VPAGGMGIAKQLKDEIDACPPILVLTGRPDDAWLASWSRAEAAVPHPLDPIRLSEAVIAL 133 Query 128 LR 129 LR Sbjct 134 LR 135 >gi|120402884|ref|YP_952713.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119955702|gb|ABM12707.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length=139 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/125 (76%), Positives = 107/125 (86%), Gaps = 0/125 (0%) Query 8 LRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEA 67 LRILVYSDN +TRE+V ALG+R+HP+LP+L+Y+EVATGPMVIRQMD GG DLAILDGEA Sbjct 15 LRILVYSDNPRTREQVRLALGRRIHPELPELSYLEVATGPMVIRQMDEGGFDLAILDGEA 74 Query 68 TPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSL 127 P GGMGIAKQLKDE+ CPP+LVLT R DD WLA WSRAEAAVPHP+DPI LG V+SL Sbjct 75 APVGGMGIAKQLKDEIDDCPPVLVLTRRADDAWLARWSRAEAAVPHPIDPIRLGDAVVSL 134 Query 128 LRAPA 132 LR A Sbjct 135 LRPSA 139 >gi|333991498|ref|YP_004524112.1| two-component system response regulator [Mycobacterium sp. JDM601] gi|333487466|gb|AEF36858.1| two-component system response regulator [Mycobacterium sp. JDM601] Length=137 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/128 (76%), Positives = 104/128 (82%), Gaps = 0/128 (0%) Query 4 SSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAIL 63 SS ALRILVYSD+ TR RVM ALGK LHP LP+L YVEVAT P+VIRQMD GGIDLAIL Sbjct 7 SSQALRILVYSDDAATRARVMTALGKHLHPGLPELNYVEVATEPVVIRQMDAGGIDLAIL 66 Query 64 DGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRT 123 DGEATP GGMGI KQLKDEL CPPI+VLTGR DD WLA WS A+ A+PHPVDP+ L R Sbjct 67 DGEATPAGGMGICKQLKDELTPCPPIVVLTGRADDVWLARWSHADGALPHPVDPMALSRA 126 Query 124 VLSLLRAP 131 VL LLR P Sbjct 127 VLGLLRTP 134 >gi|111022871|ref|YP_705843.1| hypothetical protein RHA1_ro05908 [Rhodococcus jostii RHA1] gi|110822401|gb|ABG97685.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=164 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 93/122 (77%), Positives = 105/122 (87%), Gaps = 0/122 (0%) Query 8 LRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEA 67 LR+LVYSD+ TR++V+ ALG R HPDLP+L YVEVAT P+VIRQMD GGIDLA+LDGEA Sbjct 38 LRVLVYSDDANTRQKVVLALGTRPHPDLPELEYVEVATAPVVIRQMDAGGIDLAVLDGEA 97 Query 68 TPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSL 127 P GGMGIAKQLKDE+ CPPILVLTGRPDD WLASWSRAEAAVPHP+DPI L V++L Sbjct 98 VPAGGMGIAKQLKDEIDDCPPILVLTGRPDDAWLASWSRAEAAVPHPLDPIRLSEAVIAL 157 Query 128 LR 129 LR Sbjct 158 LR 159 >gi|119717356|ref|YP_924321.1| hypothetical protein Noca_3132 [Nocardioides sp. JS614] gi|119538017|gb|ABL82634.1| conserved hypothetical protein [Nocardioides sp. JS614] Length=139 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/125 (74%), Positives = 108/125 (87%), Gaps = 0/125 (0%) Query 6 TALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDG 65 TALR+LVYSD+V TR++V+ ALG+R HPDLP++ YVEVAT P+VI +D GGIDLAILDG Sbjct 9 TALRVLVYSDDVNTRQQVIVALGRRPHPDLPEVEYVEVATEPVVISNLDAGGIDLAILDG 68 Query 66 EATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVL 125 EA P GGMGIAKQLKDE+ CPPI+VLTGRP D WLA+WSRAEAAVPHP+DPI L TV+ Sbjct 69 EAVPAGGMGIAKQLKDEIYQCPPIVVLTGRPQDAWLATWSRAEAAVPHPLDPIQLAETVV 128 Query 126 SLLRA 130 SLLR+ Sbjct 129 SLLRS 133 >gi|54024637|ref|YP_118879.1| hypothetical protein nfa26680 [Nocardia farcinica IFM 10152] gi|54016145|dbj|BAD57515.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=136 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/125 (73%), Positives = 105/125 (84%), Gaps = 0/125 (0%) Query 5 STALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILD 64 STALR+LVYS++ TR +V+ ALG R HPDL + Y+EVAT PMVI +MD GGIDLAILD Sbjct 7 STALRVLVYSNDADTRRQVVLALGPRPHPDLAEFDYLEVATAPMVIERMDAGGIDLAILD 66 Query 65 GEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTV 124 GEATP GG+GIAKQLKDELA CPP+LVLTGRPDD WLA WSRAEAAVPHP+DP+ L +V Sbjct 67 GEATPAGGLGIAKQLKDELAQCPPVLVLTGRPDDAWLAKWSRAEAAVPHPIDPLRLTESV 126 Query 125 LSLLR 129 + LLR Sbjct 127 VELLR 131 >gi|229490889|ref|ZP_04384724.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229322279|gb|EEN88065.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length=140 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 88/128 (69%), Positives = 107/128 (84%), Gaps = 0/128 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P+S +RILVYSD+ TRE+V ALG+R HP +P + Y+EVAT P+V+ ++D GGIDLA Sbjct 8 PNSMAPVRILVYSDDAHTREQVRLALGERPHPSMPTIDYIEVATAPIVVAKLDAGGIDLA 67 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEA+P GGMG+AKQLKDE+A CPPILVLTGRPDD WLASWSRAEA+VP P+DPI L Sbjct 68 ILDGEASPAGGMGVAKQLKDEIADCPPILVLTGRPDDAWLASWSRAEASVPQPIDPIELA 127 Query 122 RTVLSLLR 129 TV++LLR Sbjct 128 STVIALLR 135 >gi|333922071|ref|YP_004495652.1| hypothetical protein AS9A_4419 [Amycolicicoccus subflavus DQS3-9A1] gi|333484292|gb|AEF42852.1| hypothetical protein AS9A_4419 [Amycolicicoccus subflavus DQS3-9A1] Length=157 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/126 (71%), Positives = 104/126 (83%), Gaps = 0/126 (0%) Query 4 SSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAIL 63 S+ ALR+LVYSD+ TRE+V +ALGKR HPDLP L Y++VAT +VI+ +D GG+DLAIL Sbjct 24 STLALRVLVYSDDASTREQVRQALGKRPHPDLPQLEYIDVATAAVVIKHLDAGGVDLAIL 83 Query 64 DGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRT 123 DGEA P GGMGIAKQLKDE+ CPPIL+LTGR DD WLA WSRAEAAVPHP+DPI LG+ Sbjct 84 DGEAVPVGGMGIAKQLKDEIDPCPPILILTGRADDAWLAKWSRAEAAVPHPLDPIRLGKA 143 Query 124 VLSLLR 129 V LLR Sbjct 144 VTDLLR 149 >gi|226306215|ref|YP_002766175.1| two-component response regulator [Rhodococcus erythropolis PR4] gi|226185332|dbj|BAH33436.1| putative two-component response regulator [Rhodococcus erythropolis PR4] Length=140 Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 86/128 (68%), Positives = 105/128 (83%), Gaps = 0/128 (0%) Query 2 PDSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLA 61 P+S +RILVYSD+ TRE+V ALG+R HP +P + YVEVAT P+V+ ++D GGIDLA Sbjct 8 PNSMAPVRILVYSDDAHTREQVRLALGERPHPSMPTIDYVEVATAPIVVDKLDAGGIDLA 67 Query 62 ILDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLG 121 ILDGEA+P GGMG+AKQLKDE+ CPPILVLTGRPDD WLASWSRAEA+ P P+DP+ L Sbjct 68 ILDGEASPAGGMGVAKQLKDEIVDCPPILVLTGRPDDAWLASWSRAEASAPQPIDPMELS 127 Query 122 RTVLSLLR 129 TV++LLR Sbjct 128 STVIALLR 135 >gi|325673386|ref|ZP_08153077.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325555407|gb|EGD25078.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length=137 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 84/127 (67%), Positives = 101/127 (80%), Gaps = 0/127 (0%) Query 3 DSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAI 62 + S LR+LVYS + TRERV+RALG R HPDLP+ Y+EVAT P+V+R++D GGIDLA+ Sbjct 9 EDSVTLRVLVYSSDASTRERVIRALGTRPHPDLPEFAYLEVATAPVVVRELDAGGIDLAV 68 Query 63 LDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGR 122 LDGEA P GGMGIAKQL+DEL +CPPI+VLTGR DD WLA WSRA+ V HP+DP L Sbjct 69 LDGEAQPAGGMGIAKQLRDELDACPPIVVLTGRADDRWLADWSRADGVVGHPIDPFALAE 128 Query 123 TVLSLLR 129 TV+ LLR Sbjct 129 TVVGLLR 135 >gi|312139308|ref|YP_004006644.1| two component system response regulator [Rhodococcus equi 103S] gi|311888647|emb|CBH47959.1| putative two component system response regulator [Rhodococcus equi 103S] Length=137 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/127 (67%), Positives = 100/127 (79%), Gaps = 0/127 (0%) Query 3 DSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAI 62 + S LR+LVYS + TRERV+RALG R HPDLP+ Y+EVAT P+V+R++D GGIDLA+ Sbjct 9 EDSVTLRVLVYSSDASTRERVIRALGTRPHPDLPEFAYLEVATAPVVVRELDAGGIDLAV 68 Query 63 LDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGR 122 LDGEA P GGMGIAKQL+DEL CPPI+VLTGR DD WLA WSRA+ V HP+DP L Sbjct 69 LDGEAQPAGGMGIAKQLRDELDVCPPIVVLTGRADDRWLADWSRADGVVGHPIDPFALAE 128 Query 123 TVLSLLR 129 TV+ LLR Sbjct 129 TVVGLLR 135 >gi|319950450|ref|ZP_08024364.1| two component system response regulator [Dietzia cinnamea P4] gi|319435873|gb|EFV91079.1| two component system response regulator [Dietzia cinnamea P4] Length=134 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 88/126 (70%), Positives = 103/126 (82%), Gaps = 1/126 (0%) Query 7 ALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGE 66 ALR+LVYS++ TR RVM ALG R HPDLP L YVEVAT P+V+ MD GGIDLAILDGE Sbjct 10 ALRVLVYSNDAATRGRVMSALGTRPHPDLPRLDYVEVATAPVVVEHMDAGGIDLAILDGE 69 Query 67 ATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLS 126 A+PTGG+G+AKQL+DEL CPP+LVL GR DD WLA WSRA+A+VPHP+DP+ L TV + Sbjct 70 ASPTGGLGLAKQLRDELDRCPPLLVLIGRADDRWLADWSRADASVPHPIDPLRLRDTVNT 129 Query 127 LLRAPA 132 LL APA Sbjct 130 LL-APA 134 >gi|284030724|ref|YP_003380655.1| response regulator receiver protein [Kribbella flavida DSM 17836] gi|283810017|gb|ADB31856.1| response regulator receiver protein [Kribbella flavida DSM 17836] Length=138 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/126 (68%), Positives = 96/126 (77%), Gaps = 0/126 (0%) Query 4 SSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAIL 63 S L++LVYSD+ TRE V ALGKR DLP+L YVE AT P VI+ MD GG+DLAIL Sbjct 3 SQRPLKVLVYSDDRTTRESVRLALGKRPAADLPELEYVECATEPAVIKTMDAGGVDLAIL 62 Query 64 DGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRT 123 DGEA P GGMGIA+QLKDE+ CPP+LVLTGRP D WLA+WSRAEAAVPHP+DPI L Sbjct 63 DGEAVPAGGMGIARQLKDEIFRCPPVLVLTGRPQDAWLATWSRAEAAVPHPIDPIRLAEA 122 Query 124 VLSLLR 129 LLR Sbjct 123 TAGLLR 128 >gi|326382768|ref|ZP_08204458.1| hypothetical protein SCNU_07513 [Gordonia neofelifaecis NRRL B-59395] gi|326198358|gb|EGD55542.1| hypothetical protein SCNU_07513 [Gordonia neofelifaecis NRRL B-59395] Length=136 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/127 (61%), Positives = 95/127 (75%), Gaps = 0/127 (0%) Query 3 DSSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAI 62 D LR+LVYSD+ TR +V+ ALG+RLHPDLPDL ++EVAT PMV+ +D +DLA+ Sbjct 10 DDRVTLRVLVYSDDSGTRRQVLGALGERLHPDLPDLEFIEVATAPMVLAHLDDRSVDLAV 69 Query 63 LDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGR 122 LDGEA PTGGMG+AKQ++DE CPP+LVL R D WLA WSRA+A PVDP+ L R Sbjct 70 LDGEAAPTGGMGLAKQIRDEYEPCPPLLVLIAREADRWLADWSRADATAMLPVDPLELPR 129 Query 123 TVLSLLR 129 TV+ LLR Sbjct 130 TVVGLLR 136 >gi|326333557|ref|ZP_08199797.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325948666|gb|EGD40766.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length=136 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/126 (60%), Positives = 96/126 (77%), Gaps = 0/126 (0%) Query 4 SSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAIL 63 + +L+ILVYSD++ R++V+ ALG+R HP LP++ YVEVAT P V Q+D GG+ LA+L Sbjct 5 TPNSLKILVYSDDIDVRKQVILALGRRPHPSLPEVEYVEVATEPAVRAQLDAGGLALAVL 64 Query 64 DGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRT 123 DGEA P GG+GIAK +KDE+ PPI+VL GRP D WL +WSRAEA V HP+DP L RT Sbjct 65 DGEAAPAGGLGIAKAVKDEVPGAPPIVVLIGRPQDAWLGTWSRAEATVAHPLDPFELART 124 Query 124 VLSLLR 129 V+ LLR Sbjct 125 VVGLLR 130 >gi|311895598|dbj|BAJ28006.1| putative response regulator [Kitasatospora setae KM-6054] Length=141 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 70/127 (56%), Positives = 96/127 (76%), Gaps = 0/127 (0%) Query 4 SSTALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAIL 63 S L +LVYSD+ TRE+V ALG+R D+P + Y+E AT P V+R +++GG+DL +L Sbjct 5 SDETLTVLVYSDDRNTREQVTLALGRRPAADVPAVEYLECATAPAVLRALEKGGVDLCVL 64 Query 64 DGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRT 123 DGEA P GG+G+ +QLKDE+ CPP+LV+ GRP D+WLA+WSRA+AA+ HPVDP+ L + Sbjct 65 DGEAAPVGGLGLTRQLKDEIYGCPPVLVVIGRPQDSWLAAWSRADAAISHPVDPVALAQA 124 Query 124 VLSLLRA 130 +LLRA Sbjct 125 ATTLLRA 131 >gi|256390872|ref|YP_003112436.1| response regulator receiver protein [Catenulispora acidiphila DSM 44928] gi|256357098|gb|ACU70595.1| response regulator receiver protein [Catenulispora acidiphila DSM 44928] Length=140 Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 71/124 (58%), Positives = 93/124 (75%), Gaps = 0/124 (0%) Query 7 ALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGE 66 A+++L+YSD+ TRE+V+ ALG+R+ DLP + E AT V+ +D GG D+ ILDGE Sbjct 9 AVKVLIYSDDSTTREKVVLALGRRVAADLPPIKTHEFATPLAVVNAVDAGGFDILILDGE 68 Query 67 ATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLS 126 ATP GGMG+ +QLKDE+ CPP+LVLTGRP D WLA+WSRAEA PHP+DP+ L +V Sbjct 69 ATPAGGMGVCRQLKDEIYQCPPVLVLTGRPQDGWLATWSRAEAWTPHPIDPVALADSVAE 128 Query 127 LLRA 130 L+RA Sbjct 129 LVRA 132 >gi|262200421|ref|YP_003271629.1| hypothetical protein Gbro_0402 [Gordonia bronchialis DSM 43247] gi|262083768|gb|ACY19736.1| hypothetical protein Gbro_0402 [Gordonia bronchialis DSM 43247] Length=135 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/125 (59%), Positives = 93/125 (75%), Gaps = 0/125 (0%) Query 5 STALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILD 64 S ALR+LVYSD+ TR +V+ ALG R P +P+L+++EVAT PMV Q+D G +D I D Sbjct 7 SRALRVLVYSDDADTRAQVIGALGTRPDPAIPELSFIEVATAPMVFAQLDAGVVDAVIAD 66 Query 65 GEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTV 124 GEATP+GGMG+AKQ+KDEL CPP LVL GR DD WLA WSRA+A PVDPI L T Sbjct 67 GEATPSGGMGVAKQMKDELDPCPPTLVLLGRADDRWLADWSRADATATLPVDPIALPATF 126 Query 125 LSLLR 129 +++++ Sbjct 127 VAMVK 131 >gi|291440114|ref|ZP_06579504.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343009|gb|EFE69965.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length=133 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 69/120 (58%), Positives = 91/120 (76%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSDN TRE+V A G+R PD+P + +VE AT P V++++DRGGID+ +LDGEA P Sbjct 7 VLVYSDNAGTREQVRLATGRRPAPDVPVVEFVECATVPAVLKELDRGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRAEAAV PV+P+ + SLLR Sbjct 67 MGGMGVCRQIKDEIFDCPPVLLLIGRPQDAWLATWSRAEAAVTLPVEPVEFASALASLLR 126 >gi|169629219|ref|YP_001702868.1| response regulator [Mycobacterium abscessus ATCC 19977] gi|169241186|emb|CAM62214.1| Probable response regulator [Mycobacterium abscessus] Length=135 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/130 (60%), Positives = 98/130 (76%), Gaps = 4/130 (3%) Query 7 ALRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQM----DRGGIDLAI 62 AL++LVYSD++ R +V++ +G R LP L +VEVATGPMVI ++ GIDLAI Sbjct 2 ALQVLVYSDDITVRRKVIQGIGARPDSALPPLEFVEVATGPMVIERLAAPGSLPGIDLAI 61 Query 63 LDGEATPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGR 122 LDGEATP GGMG+AKQ+KDE+ + PPI++LTGRP D WLASWSRAEA VP P+DP+ L Sbjct 62 LDGEATPFGGMGVAKQVKDEVDAPPPIVILTGRPQDNWLASWSRAEAVVPRPIDPMRLTA 121 Query 123 TVLSLLRAPA 132 TV+ LL + A Sbjct 122 TVIDLLGSAA 131 >gi|297199130|ref|ZP_06916527.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715150|gb|EDY59184.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length=133 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 66/120 (55%), Positives = 91/120 (76%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + ++E AT V++++D+GGID+ +LDGEA P Sbjct 7 VLVYSDDSNTREQVRIASGRRPAPDVPLVEFLECATPAAVLKELDKGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ +CPP+L+L GRP D WLA+WSRAE AV HPVDP+ + SLLR Sbjct 67 MGGMGLCRQIKDEVFNCPPVLLLIGRPQDAWLATWSRAEGAVTHPVDPVEFAAALASLLR 126 >gi|290961090|ref|YP_003492272.1| response regulator [Streptomyces scabiei 87.22] gi|260650616|emb|CBG73732.1| putative response regulator [Streptomyces scabiei 87.22] Length=133 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 67/120 (56%), Positives = 89/120 (75%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + ++E AT VI+++DRGGID+ +LDGEA P Sbjct 7 VLVYSDDSNTREQVRLATGRRPAPDVPAVEFIECATPAAVIKELDRGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP LVL GRP D WLA+WSRA+AAV PV+P+ + SLLR Sbjct 67 MGGMGVCRQIKDEIFECPPSLVLIGRPQDAWLATWSRADAAVTLPVEPVEFASALASLLR 126 >gi|333027725|ref|ZP_08455789.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332747577|gb|EGJ78018.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length=133 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 65/119 (55%), Positives = 88/119 (74%), Gaps = 0/119 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +L+YSDN +TR +V A G+R PD P++ +VE AT P V+++++RGGID+ +LDGE P Sbjct 7 VLIYSDNAETRTQVRLATGRRPAPDAPEVQFVECATLPAVLKELERGGIDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLL 128 GGMG+ +Q+KDE+ CPP+LVL GRP D WLA+WSRAEAAV PVDP+ + LL Sbjct 67 AGGMGVCRQIKDEIFRCPPVLVLMGRPQDAWLATWSRAEAAVTLPVDPVEFAGALAGLL 125 >gi|254390608|ref|ZP_05005822.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812205|ref|ZP_06770848.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440640|ref|ZP_08215374.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704309|gb|EDY50121.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324804|gb|EFG06447.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length=133 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 66/120 (55%), Positives = 90/120 (75%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + ++E AT P V+ +++RGG+D+ +LDGE P Sbjct 7 VLVYSDDATTREQVRLAAGRRPAPDVPAVEFIECATLPAVLAELERGGVDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRAEAAV PVDP+ L + SLLR Sbjct 67 AGGMGVCRQIKDEVFQCPPVLLLIGRPQDAWLATWSRAEAAVTLPVDPVELAGALASLLR 126 >gi|344999180|ref|YP_004802034.1| response regulator receiver protein [Streptomyces sp. SirexAA-E] gi|344314806|gb|AEN09494.1| response regulator receiver protein [Streptomyces sp. SirexAA-E] Length=133 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 64/120 (54%), Positives = 90/120 (75%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R D+P++ ++E AT P V+ +DRGG+D+ +LDGE P Sbjct 7 VLVYSDDANTREQVRLAAGRRPAADVPEVEFLECATLPAVLSALDRGGVDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L GRP D+WLA+WSRA+AAV HPVDP+ + +LLR Sbjct 67 VGGMGVCRQIKDEIFGCPPVLLLIGRPQDSWLATWSRADAAVTHPVDPVDFADALAALLR 126 >gi|302550861|ref|ZP_07303203.1| response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468479|gb|EFL31572.1| response regulator [Streptomyces viridochromogenes DSM 40736] Length=133 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/123 (56%), Positives = 90/123 (74%), Gaps = 0/123 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + +VE AT V+ ++DRGGID+ +LDGEA P Sbjct 7 VLVYSDDSNTREQVRLATGRRPAPDVPVVEFVECATPAAVLTELDRGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRAEAAV PV+P+ + SLLR Sbjct 67 MGGMGVCRQIKDEVFRCPPVLLLIGRPQDAWLATWSRAEAAVTLPVEPVEFAAALASLLR 126 Query 130 APA 132 A Sbjct 127 EKA 129 >gi|297194818|ref|ZP_06912216.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720721|gb|EDY64629.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length=133 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 65/121 (54%), Positives = 90/121 (75%), Gaps = 0/121 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + ++E AT P V++ +D GGID+ +LDGE P Sbjct 7 VLVYSDDSNTREQVRLAAGRRPAPDVPPVRFLECATLPAVLKALDEGGIDVCVLDGETVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRAEAAV PVDP+ ++ +LLR Sbjct 67 AGGMGVCRQIKDEIFECPPVLLLIGRPQDAWLATWSRAEAAVTLPVDPVEFAASLAALLR 126 Query 130 A 130 + Sbjct 127 S 127 >gi|302518593|ref|ZP_07270935.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302427488|gb|EFK99303.1| two-component system response regulator [Streptomyces sp. SPB78] Length=133 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/125 (54%), Positives = 92/125 (74%), Gaps = 8/125 (6%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +L+YSDN +TR +V A G+R PD P++ +VE AT P V+++++RGGID+ +LDGE P Sbjct 7 VLIYSDNAETRTQVRLATGRRPAPDAPEVQFVECATLPAVLKELERGGIDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPI--------VLG 121 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRAEAAV PVDP+ +LG Sbjct 67 AGGMGVCRQIKDEIFRCPPVLLLMGRPQDAWLATWSRAEAAVTLPVDPVEFAGALAGLLG 126 Query 122 RTVLS 126 R+ LS Sbjct 127 RSSLS 131 >gi|318060650|ref|ZP_07979373.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076661|ref|ZP_07983993.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length=133 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 64/119 (54%), Positives = 88/119 (74%), Gaps = 0/119 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +L+YSDN +TR +V A G+R PD P++ +VE AT P V+++++RGGID+ +LDGE P Sbjct 7 VLIYSDNAETRTQVRLATGRRPAPDAPEVQFVECATLPAVLKELERGGIDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLL 128 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRAEAAV PVDP+ + LL Sbjct 67 AGGMGVCRQIKDEIFRCPPVLLLMGRPQDAWLATWSRAEAAVTLPVDPVEFAGALAGLL 125 >gi|302561059|ref|ZP_07313401.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478677|gb|EFL41770.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length=134 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/123 (55%), Positives = 91/123 (74%), Gaps = 0/123 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + +VE AT V+ ++DRGGID+ +LDGEA P Sbjct 7 VLVYSDDANTREQVRLATGRRPAPDVPVVEFVECATPAAVLTELDRGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ +CPP+L+L GRP D WLA+WSRAE+AV PV+P+ + SLLR Sbjct 67 MGGMGLCRQIKDEVFNCPPVLLLIGRPQDAWLATWSRAESAVTLPVEPVEFAAALASLLR 126 Query 130 APA 132 A Sbjct 127 RKA 129 >gi|271964191|ref|YP_003338387.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507366|gb|ACZ85644.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length=138 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/122 (55%), Positives = 87/122 (72%), Gaps = 0/122 (0%) Query 8 LRILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEA 67 +R+LVYSD+ TRE+V +A+G+R D+P + VE AT V++ D GID+A+LD EA Sbjct 7 MRVLVYSDDASTREKVRQAIGRRPAADVPLVEIVECATHAKVVQHFDSDGIDVAVLDAEA 66 Query 68 TPTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSL 127 P GGMG+A+Q KDE+ CPPI +L R DD WLA WSRAEA VP P+DP+VL TV L Sbjct 67 QPAGGMGVARQAKDEVYDCPPICLLIARRDDRWLAEWSRAEAVVPQPIDPVVLADTVADL 126 Query 128 LR 129 +R Sbjct 127 MR 128 >gi|302534027|ref|ZP_07286369.1| two-component system response regulator [Streptomyces sp. C] gi|302442922|gb|EFL14738.1| two-component system response regulator [Streptomyces sp. C] Length=133 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/122 (56%), Positives = 91/122 (75%), Gaps = 0/122 (0%) Query 9 RILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEAT 68 R+LVYSD+ TRE+V A G+R DLP + ++E AT P V++++D GGIDL +LDGEA Sbjct 6 RVLVYSDDAGTREQVRLASGRRPAADLPPVEFLECATLPAVLKELDAGGIDLCVLDGEAV 65 Query 69 PTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLL 128 P GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRA+AAV PVDP+ T+ LL Sbjct 66 PAGGMGVCRQIKDEIFRCPPVLLLMGRPQDAWLATWSRADAAVTLPVDPVDFPDTLAGLL 125 Query 129 RA 130 R+ Sbjct 126 RS 127 >gi|29832593|ref|NP_827227.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609713|dbj|BAC73762.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length=132 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/123 (55%), Positives = 91/123 (74%), Gaps = 0/123 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + ++E AT VI ++D+GGID+ +LDGEA P Sbjct 7 VLVYSDDSNTREQVRLATGRRPAPDVPVVEFLECATPAAVIAELDKGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ +CPP+L+L GRP D WLA+WSRA+AAV PVDP+ + SLLR Sbjct 67 MGGMGLCRQIKDEVFNCPPVLLLIGRPQDAWLATWSRADAAVTLPVDPVEFAAALASLLR 126 Query 130 APA 132 A Sbjct 127 QKA 129 >gi|302546078|ref|ZP_07298420.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463696|gb|EFL26789.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length=133 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 66/120 (55%), Positives = 87/120 (73%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R DLP + +VE AT P V+ ++ GGID+ +LDGE P Sbjct 7 VLVYSDDANTREQVRLATGRRPAADLPPVEFVECATLPAVLEALEDGGIDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+++L GRP D WLA+WSRAEAAV HPVDP+ L + LLR Sbjct 67 AGGMGVCRQIKDEIFQCPPVVLLIGRPQDAWLATWSRAEAAVTHPVDPVALTDALAGLLR 126 >gi|320011222|gb|ADW06072.1| response regulator receiver [Streptomyces flavogriseus ATCC 33331] Length=133 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 65/120 (55%), Positives = 87/120 (73%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G R D+P + ++E AT P V+ +DRGG+D+ +LDGE P Sbjct 7 VLVYSDDANTREQVRLAAGPRPAADVPAVEFLECATLPAVLSALDRGGVDVCVLDGETAP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRA+AAV HPVDP+ + SLLR Sbjct 67 AGGMGVCRQIKDEIFDCPPVLLLIGRPQDAWLATWSRADAAVTHPVDPVDFADALASLLR 126 >gi|21220629|ref|NP_626408.1| response regulator [Streptomyces coelicolor A3(2)] gi|289772123|ref|ZP_06531501.1| response regulator [Streptomyces lividans TK24] gi|4539221|emb|CAB39879.1| putative response regulator [Streptomyces coelicolor A3(2)] gi|289702322|gb|EFD69751.1| response regulator [Streptomyces lividans TK24] Length=133 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 65/120 (55%), Positives = 89/120 (75%), Gaps = 0/120 (0%) Query 10 ILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEATP 69 +LVYSD+ TRE+V A G+R PD+P + +VE AT V++++DRGGID+ +LDGEA P Sbjct 7 VLVYSDDSNTREQVRLATGRRPAPDVPVVEFVECATPAAVLKELDRGGIDVCVLDGEAVP 66 Query 70 TGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLLR 129 GGMG+ +Q+KDE+ CPP+L+L RP D WLA+WSRAEAAV PV+P+ + +LLR Sbjct 67 MGGMGMCRQIKDEVFQCPPVLLLIARPQDAWLATWSRAEAAVTLPVEPVEFASALAALLR 126 >gi|254382660|ref|ZP_04998018.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341563|gb|EDX22529.1| two-component system response regulator [Streptomyces sp. Mg1] Length=134 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 66/122 (55%), Positives = 89/122 (73%), Gaps = 0/122 (0%) Query 9 RILVYSDNVQTRERVMRALGKRLHPDLPDLTYVEVATGPMVIRQMDRGGIDLAILDGEAT 68 R+LVYSD+ TRE+V A G+R +LP + +VE AT P V+ ++D GG+D+ +LDGEA Sbjct 6 RVLVYSDDAGTREQVRLATGRRPAANLPPVEFVECATLPAVLSELDAGGVDVCVLDGEAA 65 Query 69 PTGGMGIAKQLKDELASCPPILVLTGRPDDTWLASWSRAEAAVPHPVDPIVLGRTVLSLL 128 P GGMG+ +Q+KDE+ CPP+L+L GRP D WLA+WSRA+AAV PVDP+ + LL Sbjct 66 PAGGMGVCRQIKDEIFRCPPVLLLMGRPQDAWLATWSRADAAVTLPVDPVDFAGALAGLL 125 Query 129 RA 130 RA Sbjct 126 RA 127 Lambda K H 0.319 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130457467840 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40