BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3145
Length=128
Score E
Sequences producing significant alignments: (Bits) Value
gi|148824339|ref|YP_001289093.1| NADH dehydrogenase subunit A [M... 254 2e-66
gi|254365770|ref|ZP_04981815.1| NADH dehydrogenase I (chain A) n... 254 3e-66
gi|15610281|ref|NP_217661.1| NADH dehydrogenase subunit A [Mycob... 254 3e-66
gi|118617946|ref|YP_906278.1| NADH dehydrogenase subunit A [Myco... 215 2e-54
gi|254821134|ref|ZP_05226135.1| NADH dehydrogenase subunit A [My... 214 2e-54
gi|183981498|ref|YP_001849789.1| NADH dehydrogenase I (chain a) ... 214 3e-54
gi|254776455|ref|ZP_05217971.1| NADH dehydrogenase subunit A [My... 213 1e-53
gi|118466422|ref|YP_883185.1| NADH dehydrogenase subunit A [Myco... 212 1e-53
gi|41409299|ref|NP_962135.1| NADH dehydrogenase subunit A [Mycob... 211 2e-53
gi|342861053|ref|ZP_08717702.1| NADH dehydrogenase subunit A [My... 211 3e-53
gi|296169192|ref|ZP_06850845.1| NADH-quinone oxidoreductase subu... 210 5e-53
gi|240169670|ref|ZP_04748329.1| NADH dehydrogenase subunit A [My... 193 9e-48
gi|291452007|ref|ZP_06591397.1| NADH dehydrogenase subunit A [St... 184 6e-45
gi|182436777|ref|YP_001824496.1| NADH dehydrogenase subunit A [S... 182 2e-44
gi|254391137|ref|ZP_05006344.1| NADH dehydrogenase subunit A [St... 182 2e-44
gi|290958260|ref|YP_003489442.1| NADH dehydrogenase subunit NuoA... 182 2e-44
gi|302536168|ref|ZP_07288510.1| NuoA [Streptomyces sp. C] >gi|30... 181 3e-44
gi|29831380|ref|NP_826014.1| NADH dehydrogenase subunit A [Strep... 181 3e-44
gi|302553427|ref|ZP_07305769.1| NADH dehydrogenase subunit A [St... 181 3e-44
gi|254382443|ref|ZP_04997802.1| NADH dehydrogenase subunit A [St... 181 3e-44
gi|337767469|emb|CCB76180.1| NADH-quinone oxidoreductase subunit... 181 3e-44
gi|21222945|ref|NP_628724.1| NADH dehydrogenase subunit A [Strep... 181 4e-44
gi|328884312|emb|CCA57551.1| NADH ubiquinone oxidoreductase chai... 181 4e-44
gi|311897890|dbj|BAJ30298.1| putative NADH-quinone oxidoreductas... 179 9e-44
gi|302559107|ref|ZP_07311449.1| NADH dehydrogenase I, A subunit ... 179 1e-43
gi|54024636|ref|YP_118878.1| NADH dehydrogenase subunit A [Nocar... 179 1e-43
gi|302543444|ref|ZP_07295786.1| NADH dehydrogenase I, A subunit ... 179 2e-43
gi|297159508|gb|ADI09220.1| NADH dehydrogenase subunit A [Strept... 178 2e-43
gi|345008468|ref|YP_004810822.1| NAD(P)H-quinone oxidoreductase ... 178 3e-43
gi|118470227|ref|YP_886424.1| NADH dehydrogenase subunit A [Myco... 174 3e-42
gi|120402883|ref|YP_952712.1| NADH-ubiquinone/plastoquinone oxid... 173 7e-42
gi|256396792|ref|YP_003118356.1| NADH dehydrogenase subunit A [C... 173 8e-42
gi|333991499|ref|YP_004524113.1| NADH dehydrogenase I (chain a) ... 172 2e-41
gi|336179828|ref|YP_004585203.1| NAD(P)H-quinone oxidoreductase ... 169 1e-40
gi|269128613|ref|YP_003301983.1| NADH-ubiquinone/plastoquinone o... 168 2e-40
gi|312139309|ref|YP_004006645.1| NADH dehydrogenase (quinone) ch... 167 4e-40
gi|312200067|ref|YP_004020128.1| NADH-ubiquinone/plastoquinone o... 166 7e-40
gi|169629220|ref|YP_001702869.1| NADH dehydrogenase subunit A [M... 166 7e-40
gi|108798550|ref|YP_638747.1| NADH dehydrogenase subunit A [Myco... 165 3e-39
gi|226365380|ref|YP_002783163.1| NADH dehydrogenase subunit A [R... 164 4e-39
gi|271962155|ref|YP_003336351.1| NADH-ubiquinone/plastoquinone o... 162 1e-38
gi|284034169|ref|YP_003384100.1| NADH-ubiquinone/plastoquinone o... 162 1e-38
gi|111220499|ref|YP_711293.1| NADH dehydrogenase subunit A [Fran... 162 1e-38
gi|145225060|ref|YP_001135738.1| NADH-ubiquinone/plastoquinone o... 162 2e-38
gi|262200420|ref|YP_003271628.1| NADH-ubiquinone/plastoquinone o... 162 2e-38
gi|158317836|ref|YP_001510344.1| NADH dehydrogenase subunit A [F... 162 2e-38
gi|111022872|ref|YP_705844.1| NADH dehydrogenase subunit A [Rhod... 162 2e-38
gi|86739251|ref|YP_479651.1| NADH dehydrogenase subunit A [Frank... 161 3e-38
gi|288917183|ref|ZP_06411552.1| NADH-ubiquinone/plastoquinone ox... 161 3e-38
gi|117927476|ref|YP_872027.1| NADH dehydrogenase subunit A [Acid... 159 9e-38
>gi|148824339|ref|YP_001289093.1| NADH dehydrogenase subunit A [Mycobacterium tuberculosis F11]
gi|167970183|ref|ZP_02552460.1| NADH dehydrogenase subunit A [Mycobacterium tuberculosis H37Ra]
gi|253800179|ref|YP_003033180.1| NADH dehydrogenase subunit I A nuoA [Mycobacterium tuberculosis
KZN 1435]
gi|254552236|ref|ZP_05142683.1| NADH dehydrogenase subunit A [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|148722866|gb|ABR07491.1| NADH dehydrogenase I chain A nuoA (NADH-ubiquinone oxidoreductase
chain A) [Mycobacterium tuberculosis F11]
gi|253321682|gb|ACT26285.1| NADH dehydrogenase subunit I A nuoA [Mycobacterium tuberculosis
KZN 1435]
Length=163
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA
Sbjct 36 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 95
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW
Sbjct 96 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 155
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 156 RRGGLTWD 163
>gi|254365770|ref|ZP_04981815.1| NADH dehydrogenase I (chain A) nuoA (NADH-ubiquinone oxidoreductase
chain A) [Mycobacterium tuberculosis str. Haarlem]
gi|289555418|ref|ZP_06444628.1| NADH dehydrogenase subunit I A nuoA [Mycobacterium tuberculosis
KZN 605]
gi|289746954|ref|ZP_06506332.1| NADH dehydrogenase subunit I chain A nuoA [Mycobacterium tuberculosis
02_1987]
11 more sequence titles
Length=158
Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA
Sbjct 31 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 90
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW
Sbjct 91 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 150
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 151 RRGGLTWD 158
>gi|15610281|ref|NP_217661.1| NADH dehydrogenase subunit A [Mycobacterium tuberculosis H37Rv]
gi|15842721|ref|NP_337758.1| NADH dehydrogenase subunit A [Mycobacterium tuberculosis CDC1551]
gi|31794321|ref|NP_856814.1| NADH dehydrogenase subunit A [Mycobacterium bovis AF2122/97]
62 more sequence titles
Length=128
Score = 254 bits (648), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/128 (99%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA
Sbjct 1 MNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW
Sbjct 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 121 RRGGLTWD 128
>gi|118617946|ref|YP_906278.1| NADH dehydrogenase subunit A [Mycobacterium ulcerans Agy99]
gi|118570056|gb|ABL04807.1| NADH dehydrogenase I (chain a) NuoA (NADH- ubiquinone oxidoreductase
chain a) [Mycobacterium ulcerans Agy99]
Length=127
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/128 (86%), Positives = 114/128 (90%), Gaps = 1/128 (0%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N YIPILVLA LAA FAVVSVVIASLVGP+RFNRSK AAYECGIEP A S G
Sbjct 1 MNAYIPILVLATLAAGFAVVSVVIASLVGPTRFNRSKLAAYECGIEPTEAQAGAS-GRET 59
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
ASGQRFP+KYYLTAMLFIVFDIEIVFLYPWAVS+D+LGTFALVEMAIFMLTVFVAYAYVW
Sbjct 60 ASGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGTFALVEMAIFMLTVFVAYAYVW 119
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 120 RRGGLTWD 127
>gi|254821134|ref|ZP_05226135.1| NADH dehydrogenase subunit A [Mycobacterium intracellulare ATCC
13950]
Length=159
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/128 (84%), Positives = 113/128 (89%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
LNVYIPILVL A+AAAFAV SVVIASL GPSRFN+SK AAYECGIEP T GP A
Sbjct 35 LNVYIPILVLGAIAAAFAVGSVVIASLAGPSRFNKSKMAAYECGIEPTETSVS---GPHA 91
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQRFP+KYYLTAMLFIVFDIEIVFLYPWAVSYD+LGTFALVEM +FMLTVFVAYAYVW
Sbjct 92 TAGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSYDALGTFALVEMVVFMLTVFVAYAYVW 151
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 152 RRGGLTWD 159
>gi|183981498|ref|YP_001849789.1| NADH dehydrogenase I (chain a) NuoA (NADH- ubiquinone oxidoreductase
chain a) [Mycobacterium marinum M]
gi|183174824|gb|ACC39934.1| NADH dehydrogenase I (chain a) NuoA (NADH- ubiquinone oxidoreductase
chain a) [Mycobacterium marinum M]
Length=162
Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/128 (86%), Positives = 114/128 (90%), Gaps = 1/128 (0%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
LN YIPILVLA LAA FAVVSVVIASLVGP+RFNRSK AAYECGIEP A S G
Sbjct 36 LNAYIPILVLATLAAGFAVVSVVIASLVGPTRFNRSKLAAYECGIEPTEAQAGAS-GRET 94
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
ASGQRFP+KYYLTAMLFIVFDIEIVFLYPWAVS+D+LGTFALVEMAIFMLTVFVAYAYVW
Sbjct 95 ASGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGTFALVEMAIFMLTVFVAYAYVW 154
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 155 RRGGLTWD 162
>gi|254776455|ref|ZP_05217971.1| NADH dehydrogenase subunit A [Mycobacterium avium subsp. avium
ATCC 25291]
gi|336459346|gb|EGO38289.1| NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Mycobacterium
avium subsp. paratuberculosis S397]
Length=159
Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/128 (83%), Positives = 112/128 (88%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
LNVYIPILVL A+A AFAV SVVIASL GPSRFN+SK AAYECGIEP T GP A
Sbjct 35 LNVYIPILVLGAIATAFAVGSVVIASLAGPSRFNKSKMAAYECGIEPTETSVS---GPRA 91
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQRFP+KYYLTAMLFIVFDIEIVFLYPWAVSYD+LGTFAL+EM +FMLTVFVAYAYVW
Sbjct 92 TAGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSYDALGTFALIEMVVFMLTVFVAYAYVW 151
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 152 RRGGLTWD 159
>gi|118466422|ref|YP_883185.1| NADH dehydrogenase subunit A [Mycobacterium avium 104]
gi|118167709|gb|ABK68606.1| NADH-quinone oxidoreductase, a subunit [Mycobacterium avium 104]
Length=154
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/128 (83%), Positives = 112/128 (88%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
LNVYIPILVL A+A AFAV SVVIASL GPSRFN+SK AAYECGIEP T GP A
Sbjct 30 LNVYIPILVLGAIATAFAVGSVVIASLAGPSRFNKSKMAAYECGIEPTETSVS---GPRA 86
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQRFP+KYYLTAMLFIVFDIEIVFLYPWAVSYD+LGTFAL+EM +FMLTVFVAYAYVW
Sbjct 87 TAGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSYDALGTFALIEMVVFMLTVFVAYAYVW 146
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 147 RRGGLTWD 154
>gi|41409299|ref|NP_962135.1| NADH dehydrogenase subunit A [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398119|gb|AAS05749.1| NuoA [Mycobacterium avium subsp. paratuberculosis K-10]
Length=125
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/128 (82%), Positives = 112/128 (88%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVYIPILVL A+A AFAV SVVIASL GPSRFN+SK AAYECGIEP T GP A
Sbjct 1 MNVYIPILVLGAIATAFAVGSVVIASLAGPSRFNKSKMAAYECGIEPTETSVS---GPRA 57
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQRFP+KYYLTAMLFIVFDIEIVFLYPWAVSYD+LGTFAL+EM +FMLTVFVAYAYVW
Sbjct 58 TAGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSYDALGTFALIEMVVFMLTVFVAYAYVW 117
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 118 RRGGLTWD 125
>gi|342861053|ref|ZP_08717702.1| NADH dehydrogenase subunit A [Mycobacterium colombiense CECT
3035]
gi|342131497|gb|EGT84767.1| NADH dehydrogenase subunit A [Mycobacterium colombiense CECT
3035]
Length=125
Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/128 (82%), Positives = 111/128 (87%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVYIPILVL A+A AFAV SV IASL GPSRFN+SK +AYECGIEP T GP A
Sbjct 1 MNVYIPILVLGAIATAFAVGSVAIASLAGPSRFNKSKMSAYECGIEPTETSVS---GPHA 57
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQRFP+KYYLTAMLFIVFDIEIVFLYPWAVSYD+LGTFALVEM IFMLTVFVAYAYVW
Sbjct 58 TAGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSYDALGTFALVEMVIFMLTVFVAYAYVW 117
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 118 RRGGLTWD 125
>gi|296169192|ref|ZP_06850845.1| NADH-quinone oxidoreductase subunit A [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896090|gb|EFG75757.1| NADH-quinone oxidoreductase subunit A [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=125
Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/128 (82%), Positives = 111/128 (87%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVYIPILVL A+AAAFAV SVVIASL GPSR+N+SK A YECGIEP T GP A
Sbjct 1 MNVYIPILVLGAIAAAFAVGSVVIASLAGPSRYNKSKMAPYECGIEPTETSVS---GPHA 57
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
GQRFP+KYYLTAMLFIVFDIEIVFLYPWAVSYD+LGTFALVEM +FMLTVFVAYAYVW
Sbjct 58 TPGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVSYDALGTFALVEMVVFMLTVFVAYAYVW 117
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 118 RRGGLTWD 125
>gi|240169670|ref|ZP_04748329.1| NADH dehydrogenase subunit A [Mycobacterium kansasii ATCC 12478]
Length=125
Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 108/128 (85%), Positives = 114/128 (90%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVYIPILVLAALAAAFAV SVVIASL GPSRFNRSK AAYECGIEP + + P A
Sbjct 1 MNVYIPILVLAALAAAFAVFSVVIASLAGPSRFNRSKLAAYECGIEPTDSSVSS---PHA 57
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQRFPIKYYLTAMLFIVFDIEIVFLYPWAVS+D+LGTFALVEM IFMLTVFVAYAYVW
Sbjct 58 TAGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSFDALGTFALVEMLIFMLTVFVAYAYVW 117
Query 121 RRGGLTWD 128
RRGGLTWD
Sbjct 118 RRGGLTWD 125
>gi|291452007|ref|ZP_06591397.1| NADH dehydrogenase subunit A [Streptomyces albus J1074]
gi|291354956|gb|EFE81858.1| NADH dehydrogenase subunit A [Streptomyces albus J1074]
Length=119
Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/128 (72%), Positives = 102/128 (80%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL AAFAV SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAAFAVFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAVS+D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVSFDALGLFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|182436777|ref|YP_001824496.1| NADH dehydrogenase subunit A [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239989930|ref|ZP_04710594.1| NADH dehydrogenase subunit A [Streptomyces roseosporus NRRL 11379]
gi|291446947|ref|ZP_06586337.1| NuoA [Streptomyces roseosporus NRRL 15998]
gi|326777372|ref|ZP_08236637.1| NAD(P)H-quinone oxidoreductase subunit 3 [Streptomyces cf. griseus
XylebKG-1]
gi|178465293|dbj|BAG19813.1| putative NADH dehydrogenase chain A [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|291349894|gb|EFE76798.1| NuoA [Streptomyces roseosporus NRRL 15998]
gi|326657705|gb|EGE42551.1| NAD(P)H-quinone oxidoreductase subunit 3 [Streptomyces griseus
XylebKG-1]
Length=119
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/128 (71%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAVS+D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVSFDALGIFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|254391137|ref|ZP_05006344.1| NADH dehydrogenase subunit A [Streptomyces clavuligerus ATCC
27064]
gi|294814394|ref|ZP_06773037.1| NADH-quinone oxidoreductase subunit A [Streptomyces clavuligerus
ATCC 27064]
gi|326442784|ref|ZP_08217518.1| NADH dehydrogenase subunit A [Streptomyces clavuligerus ATCC
27064]
gi|197704831|gb|EDY50643.1| NADH dehydrogenase subunit A [Streptomyces clavuligerus ATCC
27064]
gi|294326993|gb|EFG08636.1| NADH-quinone oxidoreductase subunit A [Streptomyces clavuligerus
ATCC 27064]
Length=119
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/128 (71%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAVS+D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVSFDALGLFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|290958260|ref|YP_003489442.1| NADH dehydrogenase subunit NuoA [Streptomyces scabiei 87.22]
gi|260647786|emb|CBG70891.1| NuoA, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
Length=119
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/128 (70%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SV++ASL+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVIMASLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDALGVFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|302536168|ref|ZP_07288510.1| NuoA [Streptomyces sp. C]
gi|302445063|gb|EFL16879.1| NuoA [Streptomyces sp. C]
Length=119
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/128 (70%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL A+ A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGAIGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++DSLG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDSLGIFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|29831380|ref|NP_826014.1| NADH dehydrogenase subunit A [Streptomyces avermitilis MA-4680]
gi|294630796|ref|ZP_06709356.1| NADH dehydrogenase I, A subunit [Streptomyces sp. e14]
gi|295837125|ref|ZP_06824058.1| NADH dehydrogenase I, A subunit [Streptomyces sp. SPB74]
9 more sequence titles
Length=119
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/128 (70%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDALGVFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|302553427|ref|ZP_07305769.1| NADH dehydrogenase subunit A [Streptomyces viridochromogenes
DSM 40736]
gi|329935997|ref|ZP_08285797.1| NADH dehydrogenase subunit A [Streptomyces griseoaurantiacus
M045]
gi|345001407|ref|YP_004804261.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Streptomyces
sp. SirexAA-E]
gi|302471045|gb|EFL34138.1| NADH dehydrogenase subunit A [Streptomyces viridochromogenes
DSM 40736]
gi|320009204|gb|ADW04054.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Streptomyces
flavogriseus ATCC 33331]
gi|329304475|gb|EGG48353.1| NADH dehydrogenase subunit A [Streptomyces griseoaurantiacus
M045]
gi|344317033|gb|AEN11721.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Streptomyces
sp. SirexAA-E]
Length=119
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/128 (70%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDALGIFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|254382443|ref|ZP_04997802.1| NADH dehydrogenase subunit A [Streptomyces sp. Mg1]
gi|194341347|gb|EDX22313.1| NADH dehydrogenase subunit A [Streptomyces sp. Mg1]
Length=119
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/128 (70%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PVP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIE+VFLYPWAV++DSLG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEVVFLYPWAVTFDSLGIFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|337767469|emb|CCB76180.1| NADH-quinone oxidoreductase subunit A [Streptomyces cattleya
NRRL 8057]
Length=119
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/128 (71%), Positives = 99/128 (78%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL LAA FA+ SV++ASL GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGGLAAGFAIFSVIMASLTGPKRYNRAKLDAYECGIEPT---------PQP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAVS+DSLG F LVEM +F+LT FVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVSFDSLGLFGLVEMLLFVLTAFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|21222945|ref|NP_628724.1| NADH dehydrogenase subunit A [Streptomyces coelicolor A3(2)]
gi|289769833|ref|ZP_06529211.1| NuoA [Streptomyces lividans TK24]
gi|291437938|ref|ZP_06577328.1| NuoA [Streptomyces ghanaensis ATCC 14672]
gi|297192788|ref|ZP_06910186.1| NADH-quinone oxidoreductase subunit A [Streptomyces pristinaespiralis
ATCC 25486]
gi|5042277|emb|CAB44531.1| NuoA, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
gi|197721025|gb|EDY64933.1| NADH-quinone oxidoreductase subunit A [Streptomyces pristinaespiralis
ATCC 25486]
gi|289700032|gb|EFD67461.1| NuoA [Streptomyces lividans TK24]
gi|291340833|gb|EFE67789.1| NuoA [Streptomyces ghanaensis ATCC 14672]
Length=119
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/128 (69%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFI+FDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIIFDIEIVFLYPWAVTFDALGIFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|328884312|emb|CCA57551.1| NADH ubiquinone oxidoreductase chain A [Streptomyces venezuelae
ATCC 10712]
Length=153
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/128 (69%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y P+LVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 35 VNAYAPVLVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 85
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 86 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDALGLFGLVEMLLFVLTVFVAYAYVW 145
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 146 RRGGLEWD 153
>gi|311897890|dbj|BAJ30298.1| putative NADH-quinone oxidoreductase subunit A [Kitasatospora
setae KM-6054]
Length=119
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 91/128 (72%), Positives = 100/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL A+AAAFAV SVV+ASL GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGAIAAAFAVGSVVMASLTGPKRYNRAKLEAYECGIEPT---------PQP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
G RFPIKYYLTAMLFIVFDIEIVFLYPWAVS+D+LG F LVEM +F+ TVFVAYAYVW
Sbjct 52 VGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVSFDALGIFGLVEMLLFIATVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|302559107|ref|ZP_07311449.1| NADH dehydrogenase I, A subunit [Streptomyces griseoflavus Tu4000]
gi|302476725|gb|EFL39818.1| NADH dehydrogenase I, A subunit [Streptomyces griseoflavus Tu4000]
Length=119
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/128 (68%), Positives = 100/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+L+GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMATLIGPKRYNRAKLEAYECGIEPT---------PTP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFI+FDIEIVF YPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIIFDIEIVFFYPWAVTFDALGLFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|54024636|ref|YP_118878.1| NADH dehydrogenase subunit A [Nocardia farcinica IFM 10152]
gi|54016144|dbj|BAD57514.1| putative NADH dehydrogenase I chain A [Nocardia farcinica IFM
10152]
Length=126
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/128 (67%), Positives = 104/128 (82%), Gaps = 2/128 (1%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N+ P LVL ALA AFAV S+V+++LVGP R+NR+K AYECGIEP T + GPG
Sbjct 1 MNLETPTLVLGALAGAFAVFSIVLSALVGPKRYNRAKLEAYECGIEP--TPHAVAGGPGN 58
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A+GQRFP+KYYLTAMLFI+FDIEIVFLYPWAV +D+LG F LV MA+F++ V +AYAY W
Sbjct 59 ATGQRFPVKYYLTAMLFIIFDIEIVFLYPWAVHFDALGLFGLVAMALFIVNVSIAYAYEW 118
Query 121 RRGGLTWD 128
RRGGL+WD
Sbjct 119 RRGGLSWD 126
>gi|302543444|ref|ZP_07295786.1| NADH dehydrogenase I, A subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302461062|gb|EFL24155.1| NADH dehydrogenase I, A subunit [Streptomyces himastatinicus
ATCC 53653]
Length=119
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/128 (68%), Positives = 100/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SVV+A+++GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVVMAAIIGPKRYNRAKLEAYECGIEPT---------PHP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAY YVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDALGLFGLVEMLLFVLTVFVAYGYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|297159508|gb|ADI09220.1| NADH dehydrogenase subunit A [Streptomyces bingchenggensis BCW-1]
Length=119
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/128 (68%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SV++A+++GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVLMAAIIGPKRYNRAKLEAYECGIEPT---------PHP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D++G F LVEM +F+LTVFVAYAYVW
Sbjct 52 AGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDAMGLFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|345008468|ref|YP_004810822.1| NAD(P)H-quinone oxidoreductase subunit 3 [Streptomyces violaceusniger
Tu 4113]
gi|344034817|gb|AEM80542.1| NAD(P)H-quinone oxidoreductase subunit 3 [Streptomyces violaceusniger
Tu 4113]
Length=119
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/128 (68%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL AL A FA+ SV++A+++GP R+NR+K AYECGIEP P
Sbjct 1 MNAYAPILVLGALGAGFAIFSVLMAAIIGPKRYNRAKLEAYECGIEPT---------PHP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+ G RFPIKYYLTAMLFIVFDIEIVFLYPWAV++D+LG F LVEM +F+LTVFVAYAYVW
Sbjct 52 SGGGRFPIKYYLTAMLFIVFDIEIVFLYPWAVTFDALGLFGLVEMLLFVLTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|118470227|ref|YP_886424.1| NADH dehydrogenase subunit A [Mycobacterium smegmatis str. MC2
155]
gi|118171514|gb|ABK72410.1| NADH-quinone oxidoreductase, a subunit [Mycobacterium smegmatis
str. MC2 155]
Length=122
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/128 (68%), Positives = 101/128 (79%), Gaps = 6/128 (4%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+ +Y PIL+L A+AA FAVVSV IA ++GP RFNRSK AYECGI+P A
Sbjct 1 MALYTPILILGAIAAVFAVVSVGIALVIGPRRFNRSKLEAYECGIDPLPPVA------AG 54
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
+GQR PI+YYL AMLFIVFDIEIVFLYPWAV++DSLG FA++EM +FMLTVFVAYAYVW
Sbjct 55 LTGQRIPIRYYLIAMLFIVFDIEIVFLYPWAVAFDSLGLFAVIEMLLFMLTVFVAYAYVW 114
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 115 RRGGLNWD 122
>gi|120402883|ref|YP_952712.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Mycobacterium
vanbaalenii PYR-1]
gi|119955701|gb|ABM12706.1| NADH dehydrogenase subunit A [Mycobacterium vanbaalenii PYR-1]
Length=138
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/128 (69%), Positives = 103/128 (81%), Gaps = 4/128 (3%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N+Y PILVL A+AA FAV SV IA L+GP R+NR+K AYECGIEP + + A
Sbjct 15 MNLYTPILVLGAIAAVFAVGSVGIALLIGPRRYNRAKLEAYECGIEPMAATDPAA----A 70
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A GQRFPI+YY+TAMLFIVFDIEIVFLYPWAV++D+LG FALVEM +FM+ VFVAY YVW
Sbjct 71 AVGQRFPIRYYVTAMLFIVFDIEIVFLYPWAVAFDNLGLFALVEMLLFMVIVFVAYGYVW 130
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 131 RRGGLQWD 138
>gi|256396792|ref|YP_003118356.1| NADH dehydrogenase subunit A [Catenulispora acidiphila DSM 44928]
gi|256363018|gb|ACU76515.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Catenulispora
acidiphila DSM 44928]
Length=119
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/128 (68%), Positives = 94/128 (74%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y PILVL LAA FAV SVV L GP R+NR+K AYECGIEP P
Sbjct 1 MNSYAPILVLGGLAAGFAVFSVVSGMLTGPKRYNRAKLEAYECGIEPT---------PQP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
G RFP+KYYLTAMLFI+FDIEIVFLYPWAV +DSLG F LVEM F+LTVFVAYAYVW
Sbjct 52 VGGGRFPVKYYLTAMLFIIFDIEIVFLYPWAVRFDSLGWFGLVEMVFFILTVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|333991499|ref|YP_004524113.1| NADH dehydrogenase I (chain a) NuoA (NADH- ubiquinone oxidoreductase
chain a) [Mycobacterium sp. JDM601]
gi|333487467|gb|AEF36859.1| NADH dehydrogenase I (chain a) NuoA (NADH- ubiquinone oxidoreductase
chain a) [Mycobacterium sp. JDM601]
Length=125
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/128 (72%), Positives = 101/128 (79%), Gaps = 3/128 (2%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y+PIL LAALAA FAV SVV +L GPSR+NRSK AYECGIEP + GP A
Sbjct 1 MNQYLPILALAALAAGFAVFSVVAGALAGPSRYNRSKLEAYECGIEPTD---QPVSGPHA 57
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
GQRFP+KYYLTAMLFIVFDIEIVFLYPWAV++D LG FAL+EM +F VFVAYAYVW
Sbjct 58 PPGQRFPVKYYLTAMLFIVFDIEIVFLYPWAVAFDGLGVFALIEMLLFAAVVFVAYAYVW 117
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 118 RRGGLNWD 125
>gi|336179828|ref|YP_004585203.1| NAD(P)H-quinone oxidoreductase subunit 3 [Frankia symbiont of
Datisca glomerata]
gi|334860808|gb|AEH11282.1| NAD(P)H-quinone oxidoreductase subunit 3 [Frankia symbiont of
Datisca glomerata]
Length=120
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/128 (65%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
L+ Y+PILVL +A+AFA+ SV+ +LVGP R+NR+K AYECGIEP R +GP
Sbjct 2 LSNYVPILVLLVIASAFAIGSVITGALVGPKRYNRAKLDAYECGIEPP----REPVGP-- 55
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
RFP+K+YLTAMLFIVFDIEI+FLYPWAV++ +LGTF LVEM +F+ TVFVAYAYVW
Sbjct 56 ---HRFPVKFYLTAMLFIVFDIEIIFLYPWAVAFGALGTFGLVEMVLFIATVFVAYAYVW 112
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 113 RRGGLEWD 120
>gi|269128613|ref|YP_003301983.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 [Thermomonospora
curvata DSM 43183]
gi|268313571|gb|ACY99945.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Thermomonospora
curvata DSM 43183]
Length=119
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 101/128 (79%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+++Y+PI+VL AL AFA SV+++++VGP R+NR+K AYECGIEP P
Sbjct 1 MDLYVPIVVLGALGFAFAAFSVLMSAVVGPKRWNRAKLEAYECGIEPT---------PQP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
G RFPIKYYLTAMLFIVFDIEI+FLYPWAV+++S+G FALVEM +F++TV VAYAYVW
Sbjct 52 VGGGRFPIKYYLTAMLFIVFDIEIIFLYPWAVAFESMGIFALVEMVLFIVTVLVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|312139309|ref|YP_004006645.1| NADH dehydrogenase (quinone) chain a nuoa [Rhodococcus equi 103S]
gi|325673385|ref|ZP_08153076.1| NADH-quinone oxidoreductase subunit A [Rhodococcus equi ATCC
33707]
gi|311888648|emb|CBH47960.1| NADH dehydrogenase (quinone) chain A NuoA [Rhodococcus equi 103S]
gi|325555406|gb|EGD25077.1| NADH-quinone oxidoreductase subunit A [Rhodococcus equi ATCC
33707]
Length=122
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/128 (65%), Positives = 95/128 (75%), Gaps = 6/128 (4%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N Y+PILVL A+A AFAV SV +AS VGP+R NR+K AYECGIEP G
Sbjct 1 MNAYVPILVLGAIAVAFAVFSVFVASAVGPARRNRAKLEAYECGIEPMQQPG------GR 54
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A GQR P+KYYLTAMLFI+FDIEIVFLYPWAV +D+LG F L MA+F+ V VAY Y W
Sbjct 55 AGGQRIPVKYYLTAMLFIIFDIEIVFLYPWAVHFDALGVFGLAAMAVFVFNVSVAYVYEW 114
Query 121 RRGGLTWD 128
RRGGL+WD
Sbjct 115 RRGGLSWD 122
>gi|312200067|ref|YP_004020128.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Frankia
sp. EuI1c]
gi|311231403|gb|ADP84258.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Frankia
sp. EuI1c]
Length=120
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/128 (66%), Positives = 98/128 (77%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
L+ Y+PILVL A+A AFA S+VI+ LVGP RFNR+K AYECGIEP P A
Sbjct 2 LSNYVPILVLIAIATAFAGGSIVISMLVGPKRFNRAKLDAYECGIEPE---------PQA 52
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A +RFP+K+YL AMLFIVFDIEI+FLYPWAV++ LG F LVEM +F+ TVFVAYAYVW
Sbjct 53 AGPRRFPVKFYLIAMLFIVFDIEIIFLYPWAVAFGGLGVFGLVEMVLFVATVFVAYAYVW 112
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 113 RRGGLEWD 120
>gi|169629220|ref|YP_001702869.1| NADH dehydrogenase subunit A [Mycobacterium abscessus ATCC 19977]
gi|169241187|emb|CAM62215.1| NADH-quinone oxidoreductase, A subunit NuoA [Mycobacterium abscessus]
Length=128
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/128 (61%), Positives = 95/128 (75%), Gaps = 0/128 (0%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
++ Y+PILVL A+A FAV SV ++S VGP R+NR+K AYECGIE A
Sbjct 1 MDAYVPILVLGAIAVVFAVFSVGVSSFVGPRRYNRAKLEAYECGIEATQHSMGRDHHGAA 60
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A G R P+KYYLTAMLFI+FDIEIVFLYPWAV +D+LG F L+ MA+F++ V VAYAY W
Sbjct 61 AGGHRVPVKYYLTAMLFIIFDIEIVFLYPWAVHFDALGVFGLLAMALFIVNVSVAYAYEW 120
Query 121 RRGGLTWD 128
RRGGL+WD
Sbjct 121 RRGGLSWD 128
>gi|108798550|ref|YP_638747.1| NADH dehydrogenase subunit A [Mycobacterium sp. MCS]
gi|119867649|ref|YP_937601.1| NADH dehydrogenase subunit A [Mycobacterium sp. KMS]
gi|126434148|ref|YP_001069839.1| NADH dehydrogenase subunit A [Mycobacterium sp. JLS]
gi|108768969|gb|ABG07691.1| NADH dehydrogenase subunit A [Mycobacterium sp. MCS]
gi|119693738|gb|ABL90811.1| NADH dehydrogenase subunit A [Mycobacterium sp. KMS]
gi|126233948|gb|ABN97348.1| NADH dehydrogenase subunit A [Mycobacterium sp. JLS]
Length=127
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/130 (77%), Positives = 112/130 (87%), Gaps = 5/130 (3%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPAS-TGARTSIGPG 59
+++Y PILVL A+AA FAVVSVVIA +VGP+R+NR+K AYECGIEP S TGA G G
Sbjct 1 MDLYTPILVLGAIAAVFAVVSVVIAGVVGPTRYNRAKMQAYECGIEPLSGTGAG---GQG 57
Query 60 AASG-QRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAY 118
+A+ QRFPIKYYLTAMLFIVFDIEIVFLYPWAV++DSLG FALVEM +FMLTVFVAYAY
Sbjct 58 SATNVQRFPIKYYLTAMLFIVFDIEIVFLYPWAVAFDSLGVFALVEMLLFMLTVFVAYAY 117
Query 119 VWRRGGLTWD 128
VWRRGGL WD
Sbjct 118 VWRRGGLNWD 127
>gi|226365380|ref|YP_002783163.1| NADH dehydrogenase subunit A [Rhodococcus opacus B4]
gi|226243870|dbj|BAH54218.1| NADH-quinone oxidoreductase chain A [Rhodococcus opacus B4]
Length=119
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/128 (65%), Positives = 99/128 (78%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVY+PILVL A+A AFAV SV++A +VGP R+NR+K AYECGIEP S+ +G G
Sbjct 1 MNVYVPILVLGAIAVAFAVFSVIVARIVGPRRYNRAKLDAYECGIEPTSS----PLGAG- 55
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
R P+KYYLTAMLFI+FDIEIVFLYPWAV +D+LG F L MA+F+ V VAYAY W
Sbjct 56 ----RIPVKYYLTAMLFIIFDIEIVFLYPWAVHFDALGFFGLGAMALFIFNVSVAYAYEW 111
Query 121 RRGGLTWD 128
RRGGL+WD
Sbjct 112 RRGGLSWD 119
>gi|271962155|ref|YP_003336351.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Streptosporangium
roseum DSM 43021]
gi|270505330|gb|ACZ83608.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Streptosporangium
roseum DSM 43021]
Length=119
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 93/128 (73%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+ +Y PILVLA LAA FAV SV IA GP R+NR+K AYECGIEP P
Sbjct 1 MELYAPILVLAVLAAGFAVFSVTIAPFTGPRRWNRAKLDAYECGIEPT---------PQP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
G RFP+KY +TAMLFIVFDIEI+FLYPWAV++D LG F LVEM +F++TV VAYAYVW
Sbjct 52 VGGGRFPLKYMITAMLFIVFDIEIIFLYPWAVAFDQLGMFGLVEMVLFIVTVLVAYAYVW 111
Query 121 RRGGLTWD 128
RR GL WD
Sbjct 112 RRKGLDWD 119
>gi|284034169|ref|YP_003384100.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 [Kribbella
flavida DSM 17836]
gi|283813462|gb|ADB35301.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Kribbella
flavida DSM 17836]
Length=119
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/128 (61%), Positives = 95/128 (75%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
++ Y+PILVL LAA F ++V ++LVGP R+NR+K +YECGIEP P
Sbjct 1 MHPYVPILVLGVLAAIFVAGTLVTSALVGPKRYNRAKLDSYECGIEPT---------PQP 51
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
G RFP+KYY+TAMLFIVFDIEI+FLYPWAV++D + F L+EM IF+ TVFVAYAYVW
Sbjct 52 VGGGRFPVKYYITAMLFIVFDIEIIFLYPWAVAFDQMALFGLIEMVIFIATVFVAYAYVW 111
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 112 RRGGLEWD 119
>gi|111220499|ref|YP_711293.1| NADH dehydrogenase subunit A [Frankia alni ACN14a]
gi|111148031|emb|CAJ59697.1| NADH-quinone oxidoreductase chain A (NADH dehydrogenase I, chain
A) (NDH-1, chain A) [Frankia alni ACN14a]
Length=144
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 95/128 (75%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
L+ Y+PILVL A+A FAV SV +L+GP RFNR+K AYECGIEP+ P
Sbjct 26 LSNYVPILVLLAIATLFAVGSVAAGALIGPRRFNRAKIDAYECGIEPS---------PAP 76
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A QRFP+KYY TAMLFIVFDIEI+FL+PWAV++DSL F L MA+FM T+FVAYAY W
Sbjct 77 AGPQRFPVKYYNTAMLFIVFDIEIIFLFPWAVAFDSLKVFGLGAMALFMATIFVAYAYEW 136
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 137 RRGGLEWD 144
>gi|145225060|ref|YP_001135738.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Mycobacterium
gilvum PYR-GCK]
gi|315445429|ref|YP_004078308.1| NADH dehydrogenase subunit A [Mycobacterium sp. Spyr1]
gi|145217546|gb|ABP46950.1| NADH dehydrogenase subunit A [Mycobacterium gilvum PYR-GCK]
gi|315263732|gb|ADU00474.1| NADH dehydrogenase subunit A [Mycobacterium sp. Spyr1]
Length=124
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/128 (71%), Positives = 103/128 (81%), Gaps = 4/128 (3%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+N+Y PILVL A+AA FAV SV IA L+GP RFNR+K AYECGIEP S A
Sbjct 1 MNLYTPILVLGAIAAVFAVGSVGIALLIGPRRFNRAKLEAYECGIEPMDA----SDPAVA 56
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A+ QRFP++YYLTAMLFIVFDIEIVFLYPWAV++DSLG FAL+EM +FM+ VFVAYAYVW
Sbjct 57 ATAQRFPMRYYLTAMLFIVFDIEIVFLYPWAVAFDSLGMFALIEMLLFMVVVFVAYAYVW 116
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 117 RRGGLQWD 124
>gi|262200420|ref|YP_003271628.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Gordonia
bronchialis DSM 43247]
gi|262083767|gb|ACY19735.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Gordonia
bronchialis DSM 43247]
Length=140
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 100/140 (72%), Gaps = 12/140 (8%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEP----------AST 50
+N Y+PI+VL A+ AAFAV SV IA +GP R+NR+K YECGIEP AS+
Sbjct 1 MNAYVPIMVLGAIGAAFAVFSVFIAVAIGPKRYNRAKLEPYECGIEPVEQSLVSTSVASS 60
Query 51 GARTSIGPGAASG--QRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIF 108
GAR +G R P+KYYLTAMLFI+FDIEIVFLYPWAV++D+LG F L+ M +F
Sbjct 61 GARQRSAGAVVTGPVHRVPVKYYLTAMLFIIFDIEIVFLYPWAVAFDALGWFGLLAMTLF 120
Query 109 MLTVFVAYAYVWRRGGLTWD 128
++ V VAYAY WRRGGL+WD
Sbjct 121 IVNVSVAYAYEWRRGGLSWD 140
>gi|158317836|ref|YP_001510344.1| NADH dehydrogenase subunit A [Frankia sp. EAN1pec]
gi|158113241|gb|ABW15438.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Frankia
sp. EAN1pec]
Length=120
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 96/128 (75%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
L+ Y+PILVL A+A FAV SV +++LVGP RFNR+K YECGIEP T A GP
Sbjct 2 LDSYVPILVLLAIAMLFAVGSVAVSALVGPKRFNRAKVDIYECGIEPEPTPA----GP-- 55
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
RFP+KYY+TAMLFIVFDIEI+FL+PWAV++DSL F L M FM T+FVAYAY+W
Sbjct 56 ---HRFPVKYYITAMLFIVFDIEIIFLFPWAVTFDSLAVFGLGAMVSFMATIFVAYAYIW 112
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 113 RRGGLEWD 120
>gi|111022872|ref|YP_705844.1| NADH dehydrogenase subunit A [Rhodococcus jostii RHA1]
gi|110822402|gb|ABG97686.1| probable NADH dehydrogenase subunit A [Rhodococcus jostii RHA1]
Length=119
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 98/128 (77%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
+NVY+PILVL A+A AFAV SV++A +VGP R+NR+K AYECGIEP + +G G
Sbjct 1 MNVYVPILVLGAIAVAFAVFSVIVARIVGPRRYNRAKLDAYECGIEPT----LSPLGAG- 55
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
R P+KYYLTAMLFI+FDIEIVFLYPWAV +D+LG F L MA+F+ V VAYAY W
Sbjct 56 ----RIPVKYYLTAMLFIIFDIEIVFLYPWAVHFDALGFFGLGAMALFIFNVSVAYAYEW 111
Query 121 RRGGLTWD 128
RRGGL+WD
Sbjct 112 RRGGLSWD 119
>gi|86739251|ref|YP_479651.1| NADH dehydrogenase subunit A [Frankia sp. CcI3]
gi|86566113|gb|ABD09922.1| NADH dehydrogenase subunit A [Frankia sp. CcI3]
Length=120
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 95/128 (75%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
L+ Y+PILVL +AA FAV SV +L+GP RFNR+K AYECGIEP+ P
Sbjct 2 LSNYVPILVLLVIAALFAVGSVAAGALIGPRRFNRAKIDAYECGIEPS---------PAP 52
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A QRFP+KYY TAMLFIVFDIEI+FL+PWAV++DSL F L MA+FM T+FVAYAY W
Sbjct 53 AGPQRFPVKYYNTAMLFIVFDIEIIFLFPWAVAFDSLAVFGLGAMALFMATIFVAYAYEW 112
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 113 RRGGLEWD 120
>gi|288917183|ref|ZP_06411552.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Frankia
sp. EUN1f]
gi|288351374|gb|EFC85582.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 3 [Frankia
sp. EUN1f]
Length=120
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/128 (63%), Positives = 95/128 (75%), Gaps = 9/128 (7%)
Query 1 LNVYIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGA 60
L+ Y+PILVL A+A FAV SVV+++LVGP RFNR+K YECGIEP P
Sbjct 2 LDSYVPILVLLAIAMLFAVGSVVVSTLVGPKRFNRAKVDIYECGIEPE---------PVP 52
Query 61 ASGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVW 120
A RFP+KYY+TAMLFIVFDIEI+FL+PWAV++DSL F L M FM T+FVAYAY+W
Sbjct 53 AGPHRFPVKYYITAMLFIVFDIEIIFLFPWAVAFDSLAVFGLGAMVSFMATIFVAYAYMW 112
Query 121 RRGGLTWD 128
RRGGL WD
Sbjct 113 RRGGLEWD 120
>gi|117927476|ref|YP_872027.1| NADH dehydrogenase subunit A [Acidothermus cellulolyticus 11B]
gi|117647939|gb|ABK52041.1| NADH dehydrogenase subunit A [Acidothermus cellulolyticus 11B]
Length=119
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/125 (62%), Positives = 89/125 (72%), Gaps = 9/125 (7%)
Query 4 YIPILVLAALAAAFAVVSVVIASLVGPSRFNRSKQAAYECGIEPASTGARTSIGPGAASG 63
Y+PI L LA FAV SV+ SL GP R+NR+K AYECGIEP P G
Sbjct 4 YVPIFALFLLAGGFAVFSVIAGSLTGPKRYNRAKYDAYECGIEPT---------PQPIGG 54
Query 64 QRFPIKYYLTAMLFIVFDIEIVFLYPWAVSYDSLGTFALVEMAIFMLTVFVAYAYVWRRG 123
RFP+KYYLTAMLFIVFDIEI+FLYPWAV+Y +G F LVEM +F++TV +AY YVWRRG
Sbjct 55 GRFPVKYYLTAMLFIVFDIEIIFLYPWAVAYGDMGVFGLVEMLLFIVTVLIAYVYVWRRG 114
Query 124 GLTWD 128
GL WD
Sbjct 115 GLEWD 119
Lambda K H
0.328 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128801298864
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40