BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3147
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610283|ref|NP_217663.1| NADH dehydrogenase subunit C [Mycob... 477 5e-133
gi|289751825|ref|ZP_06511203.1| NADH dehydrogenase subunit I C n... 474 3e-132
gi|339299590|gb|AEJ51700.1| NADH dehydrogenase subunit C [Mycoba... 437 6e-121
gi|15842723|ref|NP_337760.1| NADH dehydrogenase subunit C [Mycob... 426 1e-117
gi|183981496|ref|YP_001849787.1| NADH dehydrogenase I (chain C) ... 417 8e-115
gi|118617948|ref|YP_906280.1| NADH dehydrogenase subunit C [Myco... 416 2e-114
gi|254821136|ref|ZP_05226137.1| NADH dehydrogenase subunit C [My... 407 7e-112
gi|240169668|ref|ZP_04748327.1| NADH dehydrogenase subunit C [My... 406 1e-111
gi|296169190|ref|ZP_06850843.1| NADH-quinone oxidoreductase subu... 401 5e-110
gi|342861055|ref|ZP_08717704.1| NADH dehydrogenase subunit C [My... 397 1e-108
gi|254776457|ref|ZP_05217973.1| NADH dehydrogenase subunit C [My... 387 6e-106
gi|118462470|ref|YP_883187.1| NADH dehydrogenase subunit C [Myco... 387 7e-106
gi|41409301|ref|NP_962137.1| NADH dehydrogenase subunit C [Mycob... 387 8e-106
gi|333991501|ref|YP_004524115.1| NADH dehydrogenase I (chain C) ... 364 6e-99
gi|226365382|ref|YP_002783165.1| NADH dehydrogenase subunit C [R... 357 7e-97
gi|120402881|ref|YP_952710.1| NADH dehydrogenase subunit C [Myco... 357 9e-97
gi|325673383|ref|ZP_08153074.1| NADH-quinone oxidoreductase subu... 357 1e-96
gi|312139311|ref|YP_004006647.1| NADH dehydrogenase (quinone) ch... 356 2e-96
gi|111022874|ref|YP_705846.1| NADH dehydrogenase subunit C [Rhod... 355 3e-96
gi|118468371|ref|YP_886422.1| NADH dehydrogenase subunit C [Myco... 353 2e-95
gi|315445431|ref|YP_004078310.1| NADH dehydrogenase subunit C [M... 352 3e-95
gi|145225062|ref|YP_001135740.1| NADH dehydrogenase subunit C [M... 351 4e-95
gi|108798548|ref|YP_638745.1| NADH dehydrogenase subunit C [Myco... 348 3e-94
gi|54024634|ref|YP_118876.1| NADH dehydrogenase subunit C [Nocar... 346 1e-93
gi|333922080|ref|YP_004495661.1| NADH-quinone oxidoreductase sub... 343 2e-92
gi|229490832|ref|ZP_04384667.1| NADH-quinone oxidoreductase subu... 342 3e-92
gi|226306212|ref|YP_002766172.1| NADH-quinone oxidoreductase cha... 341 5e-92
gi|332669451|ref|YP_004452459.1| NADH (or F420H2) dehydrogenase,... 331 6e-89
gi|169629222|ref|YP_001702871.1| NADH dehydrogenase subunit C [M... 328 5e-88
gi|291437936|ref|ZP_06577326.1| NuoC [Streptomyces ghanaensis AT... 328 5e-88
gi|302559105|ref|ZP_07311447.1| NADH dehydrogenase I, C subunit ... 327 8e-88
gi|296130549|ref|YP_003637799.1| NADH (or F420H2) dehydrogenase,... 326 2e-87
gi|302543442|ref|ZP_07295784.1| NADH dehydrogenase I, C subunit ... 325 3e-87
gi|297201625|ref|ZP_06919022.1| NADH dehydrogenase subunit C [St... 325 4e-87
gi|302553428|ref|ZP_07305770.1| NADH dehydrogenase subunit C [St... 323 9e-87
gi|326382761|ref|ZP_08204451.1| NADH dehydrogenase subunit C [Go... 323 1e-86
gi|21222947|ref|NP_628726.1| NADH dehydrogenase subunit C [Strep... 323 1e-86
gi|289769832|ref|ZP_06529210.1| trifunctional NADH dehydrogenase... 323 1e-86
gi|294630798|ref|ZP_06709358.1| NADH dehydrogenase I, C subunit ... 323 2e-86
gi|262200418|ref|YP_003271626.1| NADH (or F420H2) dehydrogenase ... 323 2e-86
gi|229821707|ref|YP_002883233.1| NADH dehydrogenase subunit C [B... 323 2e-86
gi|254382441|ref|ZP_04997800.1| NADH dehydrogenase subunit C [St... 322 3e-86
gi|345001409|ref|YP_004804263.1| NADH (or F420H2) dehydrogenase ... 321 5e-86
gi|239989932|ref|ZP_04710596.1| NADH dehydrogenase subunit C [St... 321 6e-86
gi|297159510|gb|ADI09222.1| NADH dehydrogenase subunit C [Strept... 321 6e-86
gi|29831382|ref|NP_826016.1| NADH dehydrogenase subunit C [Strep... 321 7e-86
gi|290958258|ref|YP_003489440.1| NADH dehydrogenase subunit NuoC... 320 1e-85
gi|345008470|ref|YP_004810824.1| NAD(P)H-quinone oxidoreductase ... 320 1e-85
gi|343926373|ref|ZP_08765878.1| NADH-quinone oxidoreductase subu... 318 3e-85
gi|328884314|emb|CCA57553.1| NADH-ubiquinone oxidoreductase chai... 318 3e-85
>gi|15610283|ref|NP_217663.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis H37Rv]
gi|31794323|ref|NP_856816.1| NADH dehydrogenase subunit C [Mycobacterium bovis AF2122/97]
gi|121639030|ref|YP_979254.1| NADH dehydrogenase subunit C [Mycobacterium bovis BCG str. Pasteur
1173P2]
77 more sequence titles
Length=236
Score = 477 bits (1228), Expect = 5e-133, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF
Sbjct 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL
Sbjct 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET
Sbjct 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN
Sbjct 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
>gi|289751825|ref|ZP_06511203.1| NADH dehydrogenase subunit I C nuoC [Mycobacterium tuberculosis
T92]
gi|289692412|gb|EFD59841.1| NADH dehydrogenase subunit I C nuoC [Mycobacterium tuberculosis
T92]
Length=238
Score = 474 bits (1221), Expect = 3e-132, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%), Gaps = 0/235 (0%)
Query 2 SPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFD 61
SPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFD
Sbjct 4 SPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFD 63
Query 62 DIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLG 121
DIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLG
Sbjct 64 DIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLG 123
Query 122 VSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETY 181
VSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETY
Sbjct 124 VSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETY 183
Query 182 DFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
DFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN
Sbjct 184 DFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 238
>gi|339299590|gb|AEJ51700.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis CCDC5180]
Length=217
Score = 437 bits (1124), Expect = 6e-121, Method: Compositional matrix adjust.
Identities = 216/217 (99%), Positives = 217/217 (100%), Gaps = 0/217 (0%)
Query 20 VVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFE 79
+VDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFE
Sbjct 1 MVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFE 60
Query 80 DAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVY 139
DAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVY
Sbjct 61 DAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVY 120
Query 140 PLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEM 199
PLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEM
Sbjct 121 PLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEM 180
Query 200 PDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
PDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN
Sbjct 181 PDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 217
>gi|15842723|ref|NP_337760.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis CDC1551]
gi|167970181|ref|ZP_02552458.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis H37Ra]
gi|13883045|gb|AAK47574.1| NADH dehydrogenase I, C subunit [Mycobacterium tuberculosis CDC1551]
Length=210
Score = 426 bits (1095), Expect = 1e-117, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 27 MFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFEDAVEKVV 86
MFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFEDAVEKVV
Sbjct 1 MFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFEDAVEKVV 60
Query 87 VYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVYPLQSITH 146
VYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVYPLQSITH
Sbjct 61 VYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVYPLQSITH 120
Query 147 NRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEMPDDWQGH 206
NRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEMPDDWQGH
Sbjct 121 NRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEMPDDWQGH 180
Query 207 PQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
PQRKDYPLGGIPVEYKGAQIPPPDERRGYN
Sbjct 181 PQRKDYPLGGIPVEYKGAQIPPPDERRGYN 210
>gi|183981496|ref|YP_001849787.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone oxidoreductase
chain C) [Mycobacterium marinum M]
gi|218534290|sp|B2HGE6.1|NUOC_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|183174822|gb|ACC39932.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone oxidoreductase
chain C) [Mycobacterium marinum M]
Length=238
Score = 417 bits (1071), Expect = 8e-115, Method: Compositional matrix adjust.
Identities = 204/238 (86%), Positives = 219/238 (93%), Gaps = 2/238 (0%)
Query 1 MSPPNQDAQE--GRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGG 58
MS P+Q+ + G+ S EVVDVRRGMFGV GTGDTSGYGRLVR++VLPGSSPRPYG
Sbjct 1 MSSPDQNPSDAAGQTGSSNEEVVDVRRGMFGVKGTGDTSGYGRLVREIVLPGSSPRPYGF 60
Query 59 YFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFEL 118
YFD+I DRLAEAL + VEFEDA+EKVVVYR+ELTLHVRR+ L RVAQ LRDEPELRFEL
Sbjct 61 YFDEIADRLAEALNRDGVEFEDAIEKVVVYRNELTLHVRREALLRVAQSLRDEPELRFEL 120
Query 119 CLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHER 178
CLGV+GVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSL+A+YPTNDWHER
Sbjct 121 CLGVNGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLYAVYPTNDWHER 180
Query 179 ETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ETYDFFGIIFDGHP+LTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN
Sbjct 181 ETYDFFGIIFDGHPSLTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 238
>gi|118617948|ref|YP_906280.1| NADH dehydrogenase subunit C [Mycobacterium ulcerans Agy99]
gi|218534310|sp|A0PR40.1|NUOC_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|118570058|gb|ABL04809.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone oxidoreductase
chain C) [Mycobacterium ulcerans Agy99]
Length=238
Score = 416 bits (1068), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 203/238 (86%), Positives = 219/238 (93%), Gaps = 2/238 (0%)
Query 1 MSPPNQDAQE--GRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGG 58
MS P+Q+ + G+ S EVVDVRRGMFGV G+GDTSGYGRLVR++VLPGSSPRPYG
Sbjct 1 MSSPDQNPSDAAGQTGSSNEEVVDVRRGMFGVKGSGDTSGYGRLVREIVLPGSSPRPYGF 60
Query 59 YFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFEL 118
YFD+I DRLAEAL + VEFEDA+EKVVVYR+ELTLHVRR+ L RVAQ LRDEPELRFEL
Sbjct 61 YFDEIADRLAEALNRDGVEFEDAIEKVVVYRNELTLHVRREALLRVAQSLRDEPELRFEL 120
Query 119 CLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHER 178
CLGV+GVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSL+A+YPTNDWHER
Sbjct 121 CLGVNGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLYAVYPTNDWHER 180
Query 179 ETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ETYDFFGIIFDGHP+LTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN
Sbjct 181 ETYDFFGIIFDGHPSLTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 238
>gi|254821136|ref|ZP_05226137.1| NADH dehydrogenase subunit C [Mycobacterium intracellulare ATCC
13950]
Length=235
Score = 407 bits (1046), Expect = 7e-112, Method: Compositional matrix adjust.
Identities = 200/238 (85%), Positives = 215/238 (91%), Gaps = 5/238 (2%)
Query 1 MSPPNQDAQE--GRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGG 58
MS PNQD E GR D EV+DVRRGMFGV G+GDTSGYGRLVR+V+LPGSSPRPYGG
Sbjct 1 MSSPNQDPHEAIGRADE---EVIDVRRGMFGVQGSGDTSGYGRLVREVLLPGSSPRPYGG 57
Query 59 YFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFEL 118
YFD++VD LAEAL+ VEF DA+EKVVVYR+ELTLHVRR+ LP+VAQRLRDEP+LRFE+
Sbjct 58 YFDELVDGLAEALKKGGVEFTDAIEKVVVYRNELTLHVRREALPQVAQRLRDEPQLRFEM 117
Query 119 CLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHER 178
CLGVSGVHYPHE GRELHAVYPLQSITHNRR+RLEVSAPD DPHIPSLF IYPT DWHER
Sbjct 118 CLGVSGVHYPHEAGRELHAVYPLQSITHNRRVRLEVSAPDDDPHIPSLFGIYPTTDWHER 177
Query 179 ETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ETYDFFGIIFDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERR YN
Sbjct 178 ETYDFFGIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRAYN 235
>gi|240169668|ref|ZP_04748327.1| NADH dehydrogenase subunit C [Mycobacterium kansasii ATCC 12478]
Length=239
Score = 406 bits (1043), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 204/242 (85%), Positives = 218/242 (91%), Gaps = 9/242 (3%)
Query 1 MSPPNQDAQEG--RPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGG 58
MS P+QD +E R D EV+DVRRGMFGVSGTGDTSGYGRLVRQV LPGSSPRPYGG
Sbjct 1 MSSPDQDPREAIARADE---EVIDVRRGMFGVSGTGDTSGYGRLVRQVTLPGSSPRPYGG 57
Query 59 YFDDIVDRLAEALRHERVEFEDAVEKVVVYRD----ELTLHVRRDLLPRVAQRLRDEPEL 114
YFDDI DRLAEAL E VEF+DA+EKVVVY ELTLHVRR+ LP+VAQRLRDEPEL
Sbjct 58 YFDDIADRLAEALHGEGVEFDDAIEKVVVYPQGEGAELTLHVRRERLPQVAQRLRDEPEL 117
Query 115 RFELCLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTND 174
RFE+CLGV+GVHYPHETGRELHAVYPLQSITHNRRLRLEVS PDSDPHIPSL+++YPTND
Sbjct 118 RFEMCLGVNGVHYPHETGRELHAVYPLQSITHNRRLRLEVSVPDSDPHIPSLYSVYPTND 177
Query 175 WHERETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRG 234
WHERETYDFFGI+FDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERRG
Sbjct 178 WHERETYDFFGIVFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRG 237
Query 235 YN 236
YN
Sbjct 238 YN 239
>gi|296169190|ref|ZP_06850843.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896088|gb|EFG75755.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=235
Score = 401 bits (1030), Expect = 5e-110, Method: Compositional matrix adjust.
Identities = 196/238 (83%), Positives = 213/238 (90%), Gaps = 5/238 (2%)
Query 1 MSPPNQDAQEG--RPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGG 58
MS P+QD QE R D EV+DVRRGMFG GTGDTSGYGRLVR+V+LPGSSPRPYG
Sbjct 1 MSSPDQDPQEAISRADE---EVIDVRRGMFGAKGTGDTSGYGRLVREVMLPGSSPRPYGR 57
Query 59 YFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFEL 118
YFDD+VD+LAEAL+ VEF DA+EKVVVYRDELTLHVRR+ LP VAQ LRD+P+LRFE+
Sbjct 58 YFDDVVDKLAEALKGAGVEFSDAIEKVVVYRDELTLHVRREALPGVAQHLRDDPDLRFEM 117
Query 119 CLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHER 178
CLGVSGVHYPHETGRELHAVYPLQSITHNRR+RLEV+APD DPHIPSL+ +YPT DWHER
Sbjct 118 CLGVSGVHYPHETGRELHAVYPLQSITHNRRVRLEVAAPDGDPHIPSLYKVYPTTDWHER 177
Query 179 ETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ETYDFFGIIFDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERR YN
Sbjct 178 ETYDFFGIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRAYN 235
>gi|342861055|ref|ZP_08717704.1| NADH dehydrogenase subunit C [Mycobacterium colombiense CECT
3035]
gi|342131499|gb|EGT84769.1| NADH dehydrogenase subunit C [Mycobacterium colombiense CECT
3035]
Length=235
Score = 397 bits (1019), Expect = 1e-108, Method: Compositional matrix adjust.
Identities = 195/238 (82%), Positives = 210/238 (89%), Gaps = 5/238 (2%)
Query 1 MSPPNQDAQEG--RPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGG 58
MS P+QD +E R D EV+DVRRGMFG G+GDTSGYGRLVR+V+LPGSSPRPYGG
Sbjct 1 MSSPDQDPKEAISRADE---EVIDVRRGMFGAKGSGDTSGYGRLVREVLLPGSSPRPYGG 57
Query 59 YFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFEL 118
YFD++VD LA AL VEF DA+EKVVVYRDELTLHVRRD L +VA RLRD+P LRFE+
Sbjct 58 YFDEVVDALAAALSEADVEFTDAIEKVVVYRDELTLHVRRDALEQVAHRLRDDPRLRFEM 117
Query 119 CLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHER 178
CLGVSGVHYPHETGRELHAVYPLQSITHNRR+RLEVSAP+ DPHIPSLF IYPT DWHER
Sbjct 118 CLGVSGVHYPHETGRELHAVYPLQSITHNRRVRLEVSAPEGDPHIPSLFRIYPTTDWHER 177
Query 179 ETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ETYDFFGIIFDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERR YN
Sbjct 178 ETYDFFGIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRAYN 235
>gi|254776457|ref|ZP_05217973.1| NADH dehydrogenase subunit C [Mycobacterium avium subsp. avium
ATCC 25291]
Length=235
Score = 387 bits (995), Expect = 6e-106, Method: Compositional matrix adjust.
Identities = 188/236 (80%), Positives = 203/236 (87%), Gaps = 1/236 (0%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
MS P+QD +E EV+DVRRGMFG +GTGDTSGYGRLVR V LPGSSPRPYG YF
Sbjct 1 MSSPDQDPREAIAQG-DDEVIDVRRGMFGAAGTGDTSGYGRLVRTVTLPGSSPRPYGSYF 59
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
DD+VD L E+L+ +EF A+EKVVVYRDELTLHV R LP VAQ LRD+P LRFE+CL
Sbjct 60 DDVVDTLTESLQSNGIEFHQAIEKVVVYRDELTLHVDRAALPHVAQHLRDDPRLRFEMCL 119
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYPHETGRELHAVYPLQSITHNRR+RLEV+ PD DPHIPSL+ IYPT DWHERET
Sbjct 120 GVSGVHYPHETGRELHAVYPLQSITHNRRVRLEVAVPDEDPHIPSLYRIYPTTDWHERET 179
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGIIFDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERR YN
Sbjct 180 YDFFGIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRAYN 235
>gi|118462470|ref|YP_883187.1| NADH dehydrogenase subunit C [Mycobacterium avium 104]
gi|218534287|sp|A0QJU9.1|NUOC_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|118163757|gb|ABK64654.1| NADH-quinone oxidoreductase chain c [Mycobacterium avium 104]
Length=235
Score = 387 bits (994), Expect = 7e-106, Method: Compositional matrix adjust.
Identities = 188/236 (80%), Positives = 203/236 (87%), Gaps = 1/236 (0%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
MS P+QD +E EV+DVRRGMFG +GTGDTSGYGRLVR V LPGSSPRPYG YF
Sbjct 1 MSSPDQDPREAIAQG-DDEVIDVRRGMFGAAGTGDTSGYGRLVRTVTLPGSSPRPYGSYF 59
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
DD+VD L E+L+ +EF A+EKVVVYRDELTLHV R LP VAQ LRD+P LRFE+CL
Sbjct 60 DDVVDTLTESLQSNGIEFHQAIEKVVVYRDELTLHVDRAALPHVAQHLRDDPRLRFEMCL 119
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYPHETGRELHAVYPLQSITHNRR+RLEV+ PD DPHIPSL+ IYPT DWHERET
Sbjct 120 GVSGVHYPHETGRELHAVYPLQSITHNRRVRLEVAVPDGDPHIPSLYRIYPTTDWHERET 179
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGIIFDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERR YN
Sbjct 180 YDFFGIIFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRAYN 235
>gi|41409301|ref|NP_962137.1| NADH dehydrogenase subunit C [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|81700409|sp|Q73V13.1|NUOC_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|41398121|gb|AAS05751.1| NuoC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459344|gb|EGO38287.1| NADH dehydrogenase, subunit C [Mycobacterium avium subsp. paratuberculosis
S397]
Length=235
Score = 387 bits (993), Expect = 8e-106, Method: Compositional matrix adjust.
Identities = 187/236 (80%), Positives = 203/236 (87%), Gaps = 1/236 (0%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
MS P+QD +E EV+DVRRGMFG +GTGDTSGYGRLVR V LPGSSPRPYG YF
Sbjct 1 MSSPDQDPREAIAQG-DDEVIDVRRGMFGAAGTGDTSGYGRLVRTVTLPGSSPRPYGSYF 59
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
DD+VD L E+L+ +EF A+EKVVVYRDELTLHV R LP VAQ LRD+P LRFE+CL
Sbjct 60 DDVVDTLTESLQSNGIEFHQAIEKVVVYRDELTLHVDRAALPHVAQHLRDDPRLRFEMCL 119
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYPHETGRELHAVYPLQSITHNRR+RLEV+ PD DPHIPSL+ IYPT DWHERET
Sbjct 120 GVSGVHYPHETGRELHAVYPLQSITHNRRVRLEVAVPDEDPHIPSLYRIYPTTDWHERET 179
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGI+FDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPDERR YN
Sbjct 180 YDFFGIVFDGHPSLTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDERRAYN 235
>gi|333991501|ref|YP_004524115.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone oxidoreductase
chain C) [Mycobacterium sp. JDM601]
gi|333487469|gb|AEF36861.1| NADH dehydrogenase I (chain C) NuoC (NADH- ubiquinone oxidoreductase
chain C) [Mycobacterium sp. JDM601]
Length=233
Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 174/232 (75%), Positives = 197/232 (85%), Gaps = 0/232 (0%)
Query 5 NQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIV 64
+Q +G + + +V+ VRRG+FG +GTGDTSGYGRLV + LPG +PRPYGGYFD++V
Sbjct 2 SQGTADGEGPADSEDVIKVRRGLFGAAGTGDTSGYGRLVNKAALPGETPRPYGGYFDEVV 61
Query 65 DRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSG 124
D L L+ E +EF DAVEKVVVYR ELTL+V R LP VAQ LRDEP+LRFEL LGVSG
Sbjct 62 DTLTAVLQREGIEFADAVEKVVVYRGELTLYVHRAQLPAVAQLLRDEPDLRFELSLGVSG 121
Query 125 VHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFF 184
VHYP +T RELHAVYPL+SITH RR+RLEV+APD+DPHIPSL+ IYPT DWHERETYDFF
Sbjct 122 VHYPADTDRELHAVYPLRSITHGRRIRLEVAAPDADPHIPSLYGIYPTTDWHERETYDFF 181
Query 185 GIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
GIIFDGHPALTRIEMPDDW GHPQRKDYPLGGIPVEYKGAQIPPPD+RR YN
Sbjct 182 GIIFDGHPALTRIEMPDDWHGHPQRKDYPLGGIPVEYKGAQIPPPDQRRAYN 233
>gi|226365382|ref|YP_002783165.1| NADH dehydrogenase subunit C [Rhodococcus opacus B4]
gi|226243872|dbj|BAH54220.1| NADH-quinone oxidoreductase chain C [Rhodococcus opacus B4]
Length=239
Score = 357 bits (917), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 170/228 (75%), Positives = 194/228 (86%), Gaps = 0/228 (0%)
Query 9 QEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLA 68
Q P S + VV VR+G+FGV G+GDTSGYGRLVR V+LPG++PRPYGGYFD++ D L
Sbjct 12 QAPAPASEASHVVAVRKGLFGVRGSGDTSGYGRLVRPVLLPGNTPRPYGGYFDEVADGLG 71
Query 69 EALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYP 128
AL V FEDAVE VVV+R E+T VRR+ LP VA+ LRDEP+LRFE+CLGV+GVH+P
Sbjct 72 AALAESGVGFEDAVESVVVFRGEVTFGVRREFLPVVARALRDEPDLRFEMCLGVNGVHFP 131
Query 129 HETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIF 188
E GRELHAVYPL SITHNRR+RLEV+ PD DPHIPSL+ +YPTNDWHERETYDFFGI+F
Sbjct 132 QEAGRELHAVYPLLSITHNRRIRLEVAVPDVDPHIPSLYDVYPTNDWHERETYDFFGIVF 191
Query 189 DGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
DGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGA+I PPDERRGYN
Sbjct 192 DGHPSLTRIEMPDDWPGHPQRKDYPLGGIPVEYKGAEIAPPDERRGYN 239
>gi|120402881|ref|YP_952710.1| NADH dehydrogenase subunit C [Mycobacterium vanbaalenii PYR-1]
gi|218534320|sp|A1T6A4.1|NUOC_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|119955699|gb|ABM12704.1| NADH dehydrogenase subunit C [Mycobacterium vanbaalenii PYR-1]
Length=225
Score = 357 bits (916), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 174/223 (79%), Positives = 192/223 (87%), Gaps = 2/223 (0%)
Query 14 DSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRH 73
D P EV+ VRRGMFG G+GDTSGYGRL+R V LPGSSPRPYGGYFDD+VD L AL H
Sbjct 5 DEPDPEVIGVRRGMFGAKGSGDTSGYGRLIRSVALPGSSPRPYGGYFDDVVDALESALGH 64
Query 74 ERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGR 133
+ F ++VE+VVVYRDELTL V RD L VAQ LRD+P+LRFELCLGVSGVHYP + R
Sbjct 65 D--VFAESVERVVVYRDELTLEVHRDRLVDVAQTLRDDPDLRFELCLGVSGVHYPDDADR 122
Query 134 ELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPA 193
ELHAVYPL SITHNRR+R+EV+APDSDPHIPSLF +YPT DWHERETYDFFG+IFDGHPA
Sbjct 123 ELHAVYPLMSITHNRRIRIEVAAPDSDPHIPSLFRVYPTTDWHERETYDFFGLIFDGHPA 182
Query 194 LTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
LTRIEMPDDW GHPQRKDYPLGGIPVEY GA+IPPPDERR Y+
Sbjct 183 LTRIEMPDDWVGHPQRKDYPLGGIPVEYHGAEIPPPDERRAYS 225
>gi|325673383|ref|ZP_08153074.1| NADH-quinone oxidoreductase subunit C [Rhodococcus equi ATCC
33707]
gi|325555404|gb|EGD25075.1| NADH-quinone oxidoreductase subunit C [Rhodococcus equi ATCC
33707]
Length=250
Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/219 (77%), Positives = 192/219 (88%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E++ +R+GMFGV GTGDTSGYGRLVR V LPGS+PRPYGG+FD+ VD LA+AL V
Sbjct 32 GEMIGLRQGMFGVGGTGDTSGYGRLVRPVTLPGSTPRPYGGWFDEFVDALADALDTVGVH 91
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
F+DA+EKVVV+R ELTLHVRR+ LP A+RLRD+P LRFELCLGVSGVHYP + GRELH
Sbjct 92 FDDAIEKVVVFRGELTLHVRREYLPTAARRLRDDPALRFELCLGVSGVHYPQDPGRELHG 151
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VYPL S+TH RR+RLEV+ PD+DPHIPSL+ +YPT+DWHERETYDFFGI+FDGHPALTRI
Sbjct 152 VYPLMSVTHGRRVRLEVAVPDADPHIPSLYGVYPTSDWHERETYDFFGIVFDGHPALTRI 211
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
EMPDDW GHPQRKDYPLGG+PVEYKGA+IPPPDERR Y
Sbjct 212 EMPDDWTGHPQRKDYPLGGVPVEYKGAKIPPPDERRAYQ 250
>gi|312139311|ref|YP_004006647.1| NADH dehydrogenase (quinone) chain c nuoc [Rhodococcus equi 103S]
gi|311888650|emb|CBH47962.1| NADH dehydrogenase (quinone) chain C NuoC [Rhodococcus equi 103S]
Length=251
Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 168/219 (77%), Positives = 191/219 (88%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E++ +R+GMFGV GTGDTSGYGRLVR V LPGS+PRPYGG+FD+ VD LA+AL V
Sbjct 33 GEMIGLRQGMFGVGGTGDTSGYGRLVRPVTLPGSTPRPYGGWFDEFVDALADALDTVGVL 92
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
F+DA+EKVVV+R ELTLHVRR+ LP A+RLRD+P LRFELCLGVSGVHYP + GRELH
Sbjct 93 FDDAIEKVVVFRRELTLHVRREYLPTAARRLRDDPALRFELCLGVSGVHYPQDPGRELHG 152
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VYPL S+TH RR+RLEV+ PD+DPHIPSL+ +YPT DWHERETYDFFGI+FDGHPALTRI
Sbjct 153 VYPLMSVTHGRRVRLEVAVPDADPHIPSLYGVYPTTDWHERETYDFFGIVFDGHPALTRI 212
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
EMPDDW GHPQRKDYPLGGIPVEYKGA+IPPPDERR Y
Sbjct 213 EMPDDWTGHPQRKDYPLGGIPVEYKGAKIPPPDERRAYQ 251
>gi|111022874|ref|YP_705846.1| NADH dehydrogenase subunit C [Rhodococcus jostii RHA1]
gi|123480828|sp|Q0S448.1|NUOC_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|110822404|gb|ABG97688.1| probable NADH dehydrogenase subunit C [Rhodococcus jostii RHA1]
Length=240
Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 168/234 (72%), Positives = 196/234 (84%), Gaps = 0/234 (0%)
Query 3 PPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDD 62
P +Q + S E + VR+G+FGV G+GDTSGYGRLVR V+LPGS+PRP+GGYFDD
Sbjct 7 PHDQAPAQASKASRVTEQIGVRKGLFGVRGSGDTSGYGRLVRPVLLPGSTPRPFGGYFDD 66
Query 63 IVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGV 122
+ D L AL V FE A+E VVV+R E+T VRR+ LP VA+ LRDEP+LRFE+CLGV
Sbjct 67 VADGLGAALAESGVGFEVAIESVVVFRGEVTFGVRREFLPLVARVLRDEPDLRFEMCLGV 126
Query 123 SGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYD 182
+GVH+P + GRELHAVYPL SITHNRR+RLEV+APD+DPHIPSL+ +YPTNDWHERETYD
Sbjct 127 NGVHFPQDAGRELHAVYPLLSITHNRRIRLEVAAPDADPHIPSLYEVYPTNDWHERETYD 186
Query 183 FFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
FFGI+FDGHP+LTRIEMPDDW GHPQRKDYPLGGIPVEYKGA+I PPDERRGYN
Sbjct 187 FFGIVFDGHPSLTRIEMPDDWPGHPQRKDYPLGGIPVEYKGAEIAPPDERRGYN 240
>gi|118468371|ref|YP_886422.1| NADH dehydrogenase subunit C [Mycobacterium smegmatis str. MC2
155]
gi|218534326|sp|A0QU34.1|NUOC_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|118169658|gb|ABK70554.1| NADH-quinone oxidoreductase chain c [Mycobacterium smegmatis
str. MC2 155]
Length=238
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/240 (73%), Positives = 198/240 (83%), Gaps = 6/240 (2%)
Query 1 MSPPNQDAQE----GRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPY 56
MS N A G P E++ VRRGMFG TGDTSGYGRLVR V LPGS+PRPY
Sbjct 1 MSTSNGSANGTNGVGLPRGDEPEIIAVRRGMFGNRDTGDTSGYGRLVRPVALPGSTPRPY 60
Query 57 GGYFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRF 116
GGYFD ++DRLAE L ER + ++E+VVVYRD+LT+ V R LP VA LRD+P+LRF
Sbjct 61 GGYFDAVMDRLAEVLGEER--YAMSIERVVVYRDQLTIEVSRVQLPAVASVLRDDPDLRF 118
Query 117 ELCLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWH 176
ELCLGVSGVHYP +TGRELHAVYPL SITHNRR++LEV+APD+DPHIPSL+A+YPT DWH
Sbjct 119 ELCLGVSGVHYPEDTGRELHAVYPLMSITHNRRIQLEVAAPDADPHIPSLYAVYPTTDWH 178
Query 177 ERETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ERETYDFFGIIFDGHP+LTRIEMPDDW+GHPQRKDYPLGGIPVEY GAQIPPPD+RR Y+
Sbjct 179 ERETYDFFGIIFDGHPSLTRIEMPDDWEGHPQRKDYPLGGIPVEYHGAQIPPPDQRRSYS 238
>gi|315445431|ref|YP_004078310.1| NADH dehydrogenase subunit C [Mycobacterium sp. Spyr1]
gi|315263734|gb|ADU00476.1| NADH dehydrogenase subunit C [Mycobacterium sp. Spyr1]
Length=226
Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/220 (77%), Positives = 191/220 (87%), Gaps = 2/220 (0%)
Query 17 TAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERV 76
T E++ VRRGMFG G+GDTSGYGRL+R V LPGSSPRPYGGYFD++VDRLAEA+ +
Sbjct 9 TPEIIGVRRGMFGAKGSGDTSGYGRLIRPVALPGSSPRPYGGYFDEVVDRLAEAVGDD-- 66
Query 77 EFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELH 136
F +++E+VV++RDELTL V RD L VAQ LRD+P LRFELCLGVSGVHYP +TGRELH
Sbjct 67 AFTESIERVVIHRDELTLEVHRDRLVEVAQALRDDPALRFELCLGVSGVHYPDDTGRELH 126
Query 137 AVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTR 196
A YPL SITHNRR+R+EV+ PD DPHIPSLF +YPT DWHERETYDFFGIIFDGHP+LTR
Sbjct 127 AAYPLMSITHNRRIRVEVAVPDDDPHIPSLFGVYPTVDWHERETYDFFGIIFDGHPSLTR 186
Query 197 IEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
IEMPDDW GHPQRKDYPLGGIPVEY GA+IPPPD+RR YN
Sbjct 187 IEMPDDWVGHPQRKDYPLGGIPVEYHGAEIPPPDQRRAYN 226
>gi|145225062|ref|YP_001135740.1| NADH dehydrogenase subunit C [Mycobacterium gilvum PYR-GCK]
gi|218534313|sp|A4TDC0.1|NUOC_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|145217548|gb|ABP46952.1| NADH dehydrogenase subunit C [Mycobacterium gilvum PYR-GCK]
Length=226
Score = 351 bits (901), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 169/220 (77%), Positives = 190/220 (87%), Gaps = 2/220 (0%)
Query 17 TAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERV 76
T E++ VRRGMFG G+GDTSGYGRLVR V LPG SPRPYGGYFD++VDRLAEA+ +
Sbjct 9 TPEIIGVRRGMFGAKGSGDTSGYGRLVRPVALPGGSPRPYGGYFDEVVDRLAEAVGDD-- 66
Query 77 EFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELH 136
F +++E+VV++RDELTL V RD L VAQ LRD+P LRFELCLGVSGVHYP +TGRELH
Sbjct 67 AFTESIERVVIHRDELTLEVHRDRLVEVAQALRDDPALRFELCLGVSGVHYPDDTGRELH 126
Query 137 AVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTR 196
A YPL SITHNRR+RLEV+ PD DPHIPSLF +YPT DWHERETYDFFGIIFDGHP+LTR
Sbjct 127 AAYPLMSITHNRRIRLEVAVPDDDPHIPSLFGVYPTVDWHERETYDFFGIIFDGHPSLTR 186
Query 197 IEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
IEMPDDW GHPQRKDYPLGGIPVEY GA+IPPPD+RR YN
Sbjct 187 IEMPDDWVGHPQRKDYPLGGIPVEYHGAEIPPPDQRRAYN 226
>gi|108798548|ref|YP_638745.1| NADH dehydrogenase subunit C [Mycobacterium sp. MCS]
gi|119867648|ref|YP_937600.1| NADH dehydrogenase subunit C [Mycobacterium sp. KMS]
gi|126434146|ref|YP_001069837.1| NADH dehydrogenase subunit C [Mycobacterium sp. JLS]
6 more sequence titles
Length=231
Score = 348 bits (894), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 166/218 (77%), Positives = 188/218 (87%), Gaps = 2/218 (0%)
Query 19 EVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEF 78
EV+DVRRGMFG G+GDTSGYGRL+R V LPG SPRPYGG+FD++VD LA AL + +
Sbjct 16 EVIDVRRGMFGAKGSGDTSGYGRLIRSVALPGGSPRPYGGHFDEVVDALAAALGQDL--Y 73
Query 79 EDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAV 138
+ +VE++VVYRDELTL + R LP VA+ LRD+ LRFELCLGVSGVHYP + GRELHA
Sbjct 74 DASVERIVVYRDELTLEIARARLPVVAKTLRDDAALRFELCLGVSGVHYPGDAGRELHAA 133
Query 139 YPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIE 198
YPL SITHNRR+RLEV+APD DPHIPSLF++YPT DWHERETYDFFGIIFDGHP+LTRIE
Sbjct 134 YPLMSITHNRRIRLEVAAPDDDPHIPSLFSVYPTTDWHERETYDFFGIIFDGHPSLTRIE 193
Query 199 MPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDW GHPQRKDYPLGGIPVEY GA+IPPPDERR YN
Sbjct 194 MPDDWVGHPQRKDYPLGGIPVEYHGARIPPPDERRAYN 231
>gi|54024634|ref|YP_118876.1| NADH dehydrogenase subunit C [Nocardia farcinica IFM 10152]
gi|81823071|sp|Q5YWC9.1|NUOC_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|54016142|dbj|BAD57512.1| putative NADH dehydrogenase I chain C [Nocardia farcinica IFM
10152]
Length=253
Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/243 (71%), Positives = 196/243 (81%), Gaps = 7/243 (2%)
Query 1 MSPPNQDAQ-----EGRP--DSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSP 53
+ PP DA EG P P AEV+ VR GMFG+ GTGDTSGYGRLVR V LPG +
Sbjct 11 LHPPEPDAAATAGPEGTPPDTEPAAEVIGVRHGMFGIRGTGDTSGYGRLVRPVTLPGGTA 70
Query 54 RPYGGYFDDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPE 113
PYGG+FD++VDRL AL + F A+EK+VV+R ELTLHVRR+ L VA+ LRD+P
Sbjct 71 PPYGGWFDEVVDRLRTALENSGTPFGSALEKIVVFRGELTLHVRREHLVTVARLLRDDPA 130
Query 114 LRFELCLGVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTN 173
LRFELCLGV+GVHYP + GRELHAVYPL+SITHNR LR+E APD+DPHIPSLF +YPT
Sbjct 131 LRFELCLGVNGVHYPDDAGRELHAVYPLRSITHNRLLRVETCAPDTDPHIPSLFEVYPTT 190
Query 174 DWHERETYDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERR 233
DWHERETYDFFGI+FDGHP+LTRI MPDDW+GHPQRKDYPLGGIPVEYKGA+IPPPDERR
Sbjct 191 DWHERETYDFFGILFDGHPSLTRITMPDDWRGHPQRKDYPLGGIPVEYKGARIPPPDERR 250
Query 234 GYN 236
Y+
Sbjct 251 AYS 253
>gi|333922080|ref|YP_004495661.1| NADH-quinone oxidoreductase subunit C [Amycolicicoccus subflavus
DQS3-9A1]
gi|333484301|gb|AEF42861.1| NADH-quinone oxidoreductase subunit C [Amycolicicoccus subflavus
DQS3-9A1]
Length=246
Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/222 (78%), Positives = 193/222 (87%), Gaps = 0/222 (0%)
Query 15 SPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHE 74
S +EV+DVRRGMFGV G+GDTSGYGRLVR V LPGSSPRPYGGYFDD+ D LA AL E
Sbjct 25 SARSEVIDVRRGMFGVRGSGDTSGYGRLVRPVKLPGSSPRPYGGYFDDVADALAAALDAE 84
Query 75 RVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRE 134
V F++AVEKVVV+ E+T HV RD L VA+ LRD LRFE+CLGVSGVHYP + GRE
Sbjct 85 GVAFDEAVEKVVVFCGEMTFHVFRDHLVLVAKLLRDATLLRFEMCLGVSGVHYPEDEGRE 144
Query 135 LHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPAL 194
LHAVYPL SITHNRR+RLEV+APD+DPHIPSL+++YP NDWHERETYDFFGIIFDGHP+L
Sbjct 145 LHAVYPLMSITHNRRIRLEVAAPDADPHIPSLYSVYPANDWHERETYDFFGIIFDGHPSL 204
Query 195 TRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
TRIEMPDDW+GHPQRKDYPLGG+PVEYKGA IPPPDERR YN
Sbjct 205 TRIEMPDDWEGHPQRKDYPLGGVPVEYKGAVIPPPDERRAYN 246
>gi|229490832|ref|ZP_04384667.1| NADH-quinone oxidoreductase subunit c [Rhodococcus erythropolis
SK121]
gi|229322222|gb|EEN88008.1| NADH-quinone oxidoreductase subunit c [Rhodococcus erythropolis
SK121]
Length=220
Score = 342 bits (877), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 160/212 (76%), Positives = 179/212 (85%), Gaps = 0/212 (0%)
Query 25 RGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFEDAVEK 84
RGMFGV G+GDTSGY RL + + + RP+GGYFD++ D L ALR F DA+E+
Sbjct 9 RGMFGVRGSGDTSGYSRLAPPISVEDKASRPFGGYFDEVADSLDAALRSAGSTFTDAIER 68
Query 85 VVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVYPLQSI 144
VV++RDE+TLHV R LP+VA+RLRDE ELRFELCLGV GVHYP +TGRELHAVYP SI
Sbjct 69 VVIFRDEMTLHVERSHLPQVARRLRDESELRFELCLGVDGVHYPQDTGRELHAVYPFASI 128
Query 145 THNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEMPDDWQ 204
THNRR+RLEVS PDSDPHIPS+ IYPTNDWHERETYDFFGI+FDGHPALTRIEMPDDW+
Sbjct 129 THNRRIRLEVSVPDSDPHIPSIVGIYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWK 188
Query 205 GHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
GHPQRKDYPLGGIPVEYKGAQ PPPDERR YN
Sbjct 189 GHPQRKDYPLGGIPVEYKGAQTPPPDERRSYN 220
>gi|226306212|ref|YP_002766172.1| NADH-quinone oxidoreductase chain C [Rhodococcus erythropolis
PR4]
gi|226185329|dbj|BAH33433.1| NADH-quinone oxidoreductase chain C [Rhodococcus erythropolis
PR4]
Length=220
Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 162/212 (77%), Positives = 178/212 (84%), Gaps = 0/212 (0%)
Query 25 RGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEFEDAVEK 84
RGMFGV GTGDTSGY RL + L + RP+GGYFD + D L AL F AVE+
Sbjct 9 RGMFGVRGTGDTSGYSRLAPPISLEDKASRPFGGYFDAVADSLDAALSSAGGTFAAAVER 68
Query 85 VVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVYPLQSI 144
VV++RDE+TLHV R LP+VA+RLRDEP+LRFELCLGV GVHYP +TGRELHAVYPL SI
Sbjct 69 VVIFRDEMTLHVERSHLPQVARRLRDEPDLRFELCLGVDGVHYPQDTGRELHAVYPLASI 128
Query 145 THNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEMPDDWQ 204
THNRR+RLEVS PDSDPHIPS+ IYPTNDWHERETYDFFGI+FDGHPALTRIEMPDDW+
Sbjct 129 THNRRIRLEVSVPDSDPHIPSIVGIYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWK 188
Query 205 GHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
GHPQRKDYPLGGIPVEYKGAQ PPPDERR YN
Sbjct 189 GHPQRKDYPLGGIPVEYKGAQTPPPDERRSYN 220
>gi|332669451|ref|YP_004452459.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas fimi
ATCC 484]
gi|332338489|gb|AEE45072.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas fimi
ATCC 484]
Length=265
Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 157/218 (73%), Positives = 179/218 (83%), Gaps = 0/218 (0%)
Query 19 EVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEF 78
EV+DVR+GMFG GTGDTSGYG LV VVLPG S RPYGG+FD++VD LAE L F
Sbjct 48 EVIDVRQGMFGAHGTGDTSGYGGLVVPVVLPGPSERPYGGWFDEVVDVLAEVLDENGTGF 107
Query 79 EDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAV 138
+AVE VVV R+ELTLHV R+ + VA LRD+P+LRFEL LGVSGVHYPHE GRELHAV
Sbjct 108 ANAVESVVVDREELTLHVAREHVVAVASALRDDPDLRFELSLGVSGVHYPHEQGRELHAV 167
Query 139 YPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIE 198
Y + S+TH RRLR EV+ PD+DPH+PS ++YP NDWHERETYDFFGI+FDGHP L RIE
Sbjct 168 YHVVSVTHGRRLRFEVAIPDADPHVPSTVSVYPANDWHERETYDFFGIVFDGHPGLARIE 227
Query 199 MPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDW GHPQRKDYPLGGIPVEYKGA +PPPD+RR Y+
Sbjct 228 MPDDWPGHPQRKDYPLGGIPVEYKGATVPPPDQRRSYS 265
>gi|169629222|ref|YP_001702871.1| NADH dehydrogenase subunit C [Mycobacterium abscessus ATCC 19977]
gi|218534288|sp|B1MPG6.1|NUOC_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|169241189|emb|CAM62217.1| NADH-quinone oxidoreductase, C subunit NuoC [Mycobacterium abscessus]
Length=228
Score = 328 bits (840), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 158/219 (73%), Positives = 182/219 (84%), Gaps = 1/219 (0%)
Query 19 EVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEAL-RHERVE 77
E++ VRRG+FGV G+GDTSGYG LV+ + LP SS RPYGGYFD +VDRL L E V
Sbjct 10 EIIGVRRGLFGVRGSGDTSGYGGLVQPISLPVSSNRPYGGYFDQVVDRLESVLAEQENVT 69
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
+ DAVE VVVYRD+LT+HV+ + L +VAQ LRD+P+LRFEL LGVSGVHYP ++ RELHA
Sbjct 70 YADAVEGVVVYRDQLTIHVKAEHLVQVAQSLRDDPQLRFELSLGVSGVHYPDDSARELHA 129
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VYPL SIT NRR+ LEV+ P+SDPHIPSL A+YPT DWHERETYDFFGIIFD HPALTRI
Sbjct 130 VYPLMSITWNRRIMLEVAVPESDPHIPSLNAVYPTTDWHERETYDFFGIIFDDHPALTRI 189
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
+MPDDW GHPQRKDYPLGG+PVEY GA I PPD+RR YN
Sbjct 190 QMPDDWDGHPQRKDYPLGGVPVEYHGATIAPPDQRRSYN 228
>gi|291437936|ref|ZP_06577326.1| NuoC [Streptomyces ghanaensis ATCC 14672]
gi|291340831|gb|EFE67787.1| NuoC [Streptomyces ghanaensis ATCC 14672]
Length=246
Score = 328 bits (840), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/236 (70%), Positives = 186/236 (79%), Gaps = 4/236 (1%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
+S N Q G+ E V V+RGMFG GDTSGYG LVR V LPG + RPYGG+F
Sbjct 15 LSAQNLPGQRGQ----GGEEVRVQRGMFGADNGGDTSGYGGLVRSVRLPGPASRPYGGWF 70
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
D++ D L AL + + +A+EK VV R ELT H+ R+ L RVA+ LRD+P LRFELC
Sbjct 71 DEVADELEGALEEQGLLPGNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCT 130
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYP++ GRELHAVY L+SITHNR +RLEVSAPDSDPHIPSLF +YPTNDWHERET
Sbjct 131 GVSGVHYPNDKGRELHAVYHLRSITHNRLIRLEVSAPDSDPHIPSLFPVYPTNDWHERET 190
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGI+FDGHPALTRI MPDDWQGHPQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 191 YDFFGIVFDGHPALTRIMMPDDWQGHPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 246
>gi|302559105|ref|ZP_07311447.1| NADH dehydrogenase I, C subunit [Streptomyces griseoflavus Tu4000]
gi|302476723|gb|EFL39816.1| NADH dehydrogenase I, C subunit [Streptomyces griseoflavus Tu4000]
Length=249
Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 161/236 (69%), Positives = 188/236 (80%), Gaps = 4/236 (1%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
+S N Q G+ E + V+RGMFG + GDTSGYG LVR V LPG + RPYGG+F
Sbjct 18 LSAENLPGQRGQ----GGEEIRVQRGMFGANNGGDTSGYGGLVRSVRLPGPAARPYGGWF 73
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
D++ D L AL + + E+A+E+ VV R ELT H+ R+ L RVA+ LRD+P LRFELC
Sbjct 74 DEVADELEGALEEQDLLPENAIERTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCT 133
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYP++ GRELHAVY L+SITHNR +RLEVSAPDSDPHIPSLF++YPTNDWHERET
Sbjct 134 GVSGVHYPNDKGRELHAVYHLRSITHNRLIRLEVSAPDSDPHIPSLFSVYPTNDWHERET 193
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGI+FDGHPALTRI MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 194 YDFFGIVFDGHPALTRIMMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 249
>gi|296130549|ref|YP_003637799.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas flavigena
DSM 20109]
gi|296022364|gb|ADG75600.1| NADH (or F420H2) dehydrogenase, subunit C [Cellulomonas flavigena
DSM 20109]
Length=309
Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/218 (70%), Positives = 179/218 (83%), Gaps = 0/218 (0%)
Query 19 EVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEF 78
+VVDVR G+FGVSGTGDTSG+G LVR + +PG S RPYGG+FD++VD L E L F
Sbjct 92 DVVDVRTGLFGVSGTGDTSGFGGLVRTIAMPGPSERPYGGWFDEVVDILTEVLDESGTGF 151
Query 79 EDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAV 138
+AVE VVV R ELTL+V R+ L V Q+LRD+P+LRFEL LGVSGVH+PH+ GRELHAV
Sbjct 152 ANAVESVVVDRGELTLNVAREHLVEVVQQLRDDPDLRFELSLGVSGVHFPHDAGRELHAV 211
Query 139 YPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIE 198
Y + S+TH RRLRLEV+ P+ DPH+PS A+YP NDWHERET+DFFGI+FDGHP L RI+
Sbjct 212 YQIVSVTHGRRLRLEVAVPEGDPHVPSTTAVYPANDWHERETWDFFGIVFDGHPGLARIQ 271
Query 199 MPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDW GHPQRKDYPLGGIPVEYKGA IPPPD+RR Y+
Sbjct 272 MPDDWPGHPQRKDYPLGGIPVEYKGATIPPPDQRRSYS 309
>gi|302543442|ref|ZP_07295784.1| NADH dehydrogenase I, C subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302461060|gb|EFL24153.1| NADH dehydrogenase I, C subunit [Streptomyces himastatinicus
ATCC 53653]
Length=245
Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 155/219 (71%), Positives = 181/219 (83%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + V+RGMFG + GDT+GYG LVR V LPG + RPYGG+FD++ D L AL + +
Sbjct 27 GEAIRVQRGMFGANNGGDTTGYGGLVRPVRLPGQANRPYGGWFDEVADELEGALEEQSLL 86
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
++A+EK VV RDELT H+ R+ LPRVA+ LRD+P LRFELC GVSGVH+P + GRELHA
Sbjct 87 PDNAIEKTVVDRDELTFHIAREHLPRVARTLRDDPALRFELCTGVSGVHFPGDKGRELHA 146
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVSAPDSDPHIPS+ +YPTNDWHERETYDFFGI+FDGHPALTRI
Sbjct 147 VYHLRSITHNRVIRLEVSAPDSDPHIPSIVDVYPTNDWHERETYDFFGIVFDGHPALTRI 206
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 207 MMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 245
>gi|297201625|ref|ZP_06919022.1| NADH dehydrogenase subunit C [Streptomyces sviceus ATCC 29083]
gi|197711004|gb|EDY55038.1| NADH dehydrogenase subunit C [Streptomyces sviceus ATCC 29083]
Length=247
Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 155/219 (71%), Positives = 179/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + V+RGMFG GDTSGYG LVR + LPG + RPYGG+FD++ D L AL + +
Sbjct 29 GEEIRVQRGMFGADNGGDTSGYGGLVRSIRLPGPAARPYGGWFDEVADELEGALEEQGLL 88
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
+A+EK VV R E+T H+ R+ L RVAQ LRD+P LRFELC GVSGVHY H+ GRELHA
Sbjct 89 PGNAIEKTVVDRGEITFHIEREHLLRVAQTLRDDPALRFELCTGVSGVHYLHDKGRELHA 148
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVSAPD+DPHIPSL ++YPTNDWHERETYDFFGI+FDGHPALTRI
Sbjct 149 VYHLRSITHNRLIRLEVSAPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRI 208
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQGHPQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 209 MMPDDWQGHPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 247
>gi|302553428|ref|ZP_07305770.1| NADH dehydrogenase subunit C [Streptomyces viridochromogenes
DSM 40736]
gi|302471046|gb|EFL34139.1| NADH dehydrogenase subunit C [Streptomyces viridochromogenes
DSM 40736]
Length=336
Score = 323 bits (829), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 157/219 (72%), Positives = 180/219 (83%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + V+RGMFG + GDTSGYG LVR V LPG + RPYGG+FD++ D L AL + +
Sbjct 118 GEEIRVQRGMFGANNGGDTSGYGGLVRSVRLPGPATRPYGGWFDEVADELEGALEEQGLL 177
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
+A+EK VV RDELT H+ R+ L VA+ LRD+P LRFELC GVSGVHYP + GRELHA
Sbjct 178 PANAIEKTVVDRDELTFHIEREHLLLVARTLRDDPALRFELCTGVSGVHYPSDKGRELHA 237
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVSAPDSDPHIPSLF++YPTNDWHERETYDFFGI+FDGHPALTRI
Sbjct 238 VYHLRSITHNRLIRLEVSAPDSDPHIPSLFSVYPTNDWHERETYDFFGIVFDGHPALTRI 297
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 298 MMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 336
>gi|326382761|ref|ZP_08204451.1| NADH dehydrogenase subunit C [Gordonia neofelifaecis NRRL B-59395]
gi|326198351|gb|EGD55535.1| NADH dehydrogenase subunit C [Gordonia neofelifaecis NRRL B-59395]
Length=230
Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/218 (70%), Positives = 181/218 (84%), Gaps = 0/218 (0%)
Query 19 EVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEF 78
EV+ R G+FG +G GDTSGYGRLV + LPG++ RP+GGYFD+I D L L V +
Sbjct 13 EVIGTRHGLFGATGPGDTSGYGRLVAPITLPGNTSRPFGGYFDEIADELEAGLARRGVAY 72
Query 79 EDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAV 138
+DAVEKVVV R ++T+ V R+ L VA LRDEP LRFELCLGVSGVHYP E+GRELHAV
Sbjct 73 DDAVEKVVVDRGDMTVFVTREHLLPVAATLRDEPTLRFELCLGVSGVHYPEESGRELHAV 132
Query 139 YPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIE 198
YPL+SITHNRR+RLEV+ PD+DPH+ +L +YPT+DWHERETYDFFGI+FDGHP+LTRIE
Sbjct 133 YPLRSITHNRRIRLEVAIPDADPHVTTLLPVYPTDDWHERETYDFFGIVFDGHPSLTRIE 192
Query 199 MPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDW+GHPQRKDYPLGG+PVEYKGA I PP++RR YN
Sbjct 193 MPDDWEGHPQRKDYPLGGVPVEYKGATIAPPEQRRRYN 230
>gi|21222947|ref|NP_628726.1| NADH dehydrogenase subunit C [Streptomyces coelicolor A3(2)]
gi|81859292|sp|Q9XAQ6.1|NUOC_STRCO RecName: Full=NADH-quinone oxidoreductase subunit C; AltName:
Full=NADH dehydrogenase I subunit C; AltName: Full=NDH-1 subunit
C
gi|5042275|emb|CAB44529.1| NuoC, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
Length=251
Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/236 (68%), Positives = 185/236 (79%), Gaps = 4/236 (1%)
Query 1 MSPPNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYF 60
+S N Q G+ E + V+RGMFG + GDTSGYG LVR V LPG + RPYGG+F
Sbjct 20 LSAENLPGQRGQ----GGEEIRVQRGMFGANNGGDTSGYGGLVRSVRLPGPASRPYGGWF 75
Query 61 DDIVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCL 120
D++ D L AL + + ++A+EK VV R ELT H+ R+ L RVA+ LRD+P LRFELC
Sbjct 76 DEVADELEGALEEQGLLPDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCT 135
Query 121 GVSGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERET 180
GVSGVHYPH+ GRELHAVY L+SITHNR +RLEVSAPD DPHIPSL ++YPTNDWHERET
Sbjct 136 GVSGVHYPHDKGRELHAVYHLRSITHNRLIRLEVSAPDGDPHIPSLVSVYPTNDWHERET 195
Query 181 YDFFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
YDFFGI+FD HPALTRI MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 196 YDFFGIVFDDHPALTRIMMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 251
>gi|289769832|ref|ZP_06529210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Streptomyces
lividans TK24]
gi|289700031|gb|EFD67460.1| trifunctional NADH dehydrogenase I subunit B/C/D [Streptomyces
lividans TK24]
Length=340
Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/224 (70%), Positives = 180/224 (81%), Gaps = 0/224 (0%)
Query 13 PDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALR 72
P E + V+RGMFG + GDTSGYG LVR V LPG + RPYGG+FD++ D L AL
Sbjct 117 PRGQGGEEIRVQRGMFGANNGGDTSGYGGLVRSVRLPGPASRPYGGWFDEVADELEGALE 176
Query 73 HERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETG 132
+ + ++A+EK VV R ELT H+ R+ L RVA+ LRD+P LRFELC GVSGVHYPH+ G
Sbjct 177 EQGLLPDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSGVHYPHDKG 236
Query 133 RELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHP 192
RELHAVY L+SITHNR +RLEVSAPD DPHIPSL ++YPTNDWHERETYDFFGI+FD HP
Sbjct 237 RELHAVYHLRSITHNRLIRLEVSAPDGDPHIPSLVSVYPTNDWHERETYDFFGIVFDDHP 296
Query 193 ALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ALTRI MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 297 ALTRIMMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 340
>gi|294630798|ref|ZP_06709358.1| NADH dehydrogenase I, C subunit [Streptomyces sp. e14]
gi|292834131|gb|EFF92480.1| NADH dehydrogenase I, C subunit [Streptomyces sp. e14]
Length=245
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/219 (71%), Positives = 179/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + V+RGMFG + GDTSGYG LVR + LPG S RPYGG+FD++ D L AL + +
Sbjct 27 GEEIRVQRGMFGANNGGDTSGYGGLVRSIRLPGPSSRPYGGWFDEVADELEGALEEQGLL 86
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
+A+EK VV R ELT H+ R+ L RVA+ LRD+P LRFELC GVSGVHYPH+ GRELHA
Sbjct 87 PGNAIEKTVVDRGELTFHIEREHLLRVARTLRDDPALRFELCTGVSGVHYPHDKGRELHA 146
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVSAPD D HIPSL ++YPTNDWHERET+DFFGI+FDGHPALTRI
Sbjct 147 VYHLRSITHNRLIRLEVSAPDDDRHIPSLVSVYPTNDWHERETWDFFGIVFDGHPALTRI 206
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQGHPQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 207 MMPDDWQGHPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 245
>gi|262200418|ref|YP_003271626.1| NADH (or F420H2) dehydrogenase subunit C [Gordonia bronchialis
DSM 43247]
gi|262083765|gb|ACY19733.1| NADH (or F420H2) dehydrogenase, subunit C [Gordonia bronchialis
DSM 43247]
Length=227
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/228 (70%), Positives = 183/228 (81%), Gaps = 5/228 (2%)
Query 9 QEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLA 68
++G PD P EV+ VR G+FG GTGDTSGYG L+ + L +S RPYG YFD+I D L
Sbjct 5 RDGSPDDP--EVIGVRHGLFGALGTGDTSGYGGLIAPITLDANSSRPYGSYFDEIADLLE 62
Query 69 EALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYP 128
L + + DA+EKVVV+RDE+TLHV R L +VA LR+ P+LRFELCLGV+GVHYP
Sbjct 63 TELSDD---YSDAIEKVVVFRDEMTLHVSRTHLRQVALLLRNHPDLRFELCLGVNGVHYP 119
Query 129 HETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIF 188
+ GRELHAVYPL SITH RRLRLEVSAPD+DPHIPS+ IYPTNDWHERETYDFFGIIF
Sbjct 120 DDAGRELHAVYPLTSITHKRRLRLEVSAPDADPHIPSICDIYPTNDWHERETYDFFGIIF 179
Query 189 DGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
DGH +LTRIEMPDDW+GHPQRKDYPLGG+PVEYKG ++ PPD RR YN
Sbjct 180 DGHRSLTRIEMPDDWEGHPQRKDYPLGGVPVEYKGTRVAPPDRRRSYN 227
>gi|229821707|ref|YP_002883233.1| NADH dehydrogenase subunit C [Beutenbergia cavernae DSM 12333]
gi|229567620|gb|ACQ81471.1| NADH (or F420H2) dehydrogenase, subunit C [Beutenbergia cavernae
DSM 12333]
Length=240
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/232 (70%), Positives = 180/232 (78%), Gaps = 0/232 (0%)
Query 4 PNQDAQEGRPDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDI 63
PN + E +VV RGMFG TGDTSGYG LVR V+ + RPYG YFD++
Sbjct 8 PNTEVGEPAEVRRRLDVVATGRGMFGAQDTGDTSGYGGLVRTVITATPAERPYGSYFDEV 67
Query 64 VDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVS 123
VD L E L V F+DAVEKVVV RDELTL VRR+ L VA LRD+P+LRF+L LGVS
Sbjct 68 VDILTEVLDEAGVAFDDAVEKVVVDRDELTLDVRREHLVLVALSLRDDPDLRFDLSLGVS 127
Query 124 GVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDF 183
GVHYP +TGRELHAVY L SITHNRRLRLEV+ PD+DPH+PS A+YP NDWHERET+DF
Sbjct 128 GVHYPADTGRELHAVYHLHSITHNRRLRLEVAVPDADPHVPSTTAVYPANDWHERETWDF 187
Query 184 FGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGY 235
FGI+FDGHPAL RIEMPDDW GHPQRKDYPLGGIPVEYKGA IPPPDERR Y
Sbjct 188 FGIVFDGHPALARIEMPDDWVGHPQRKDYPLGGIPVEYKGATIPPPDERREY 239
>gi|254382441|ref|ZP_04997800.1| NADH dehydrogenase subunit C [Streptomyces sp. Mg1]
gi|194341345|gb|EDX22311.1| NADH dehydrogenase subunit C [Streptomyces sp. Mg1]
Length=240
Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 154/218 (71%), Positives = 178/218 (82%), Gaps = 0/218 (0%)
Query 19 EVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVEF 78
EV+ VR+GMFG G+GDTSGYG LVR V LPG+S RPYG YFD++ D L AL + +
Sbjct 23 EVIRVRKGMFGAGGSGDTSGYGGLVRTVALPGASVRPYGSYFDEVADELEGALEEQGLVP 82
Query 79 EDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAV 138
+A+EK VV R ELT H+ R+ L +VA LRD+P LRFELC GVSGVH+P + GRELHAV
Sbjct 83 GNAIEKTVVDRGELTFHIAREHLVQVASTLRDDPALRFELCTGVSGVHFPGDKGRELHAV 142
Query 139 YPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIE 198
Y L+SITH R +RLEVSAP+ DPH+PSL A+YPTNDWHERETYDFFG+IFDGHPALTRI
Sbjct 143 YHLRSITHGRVVRLEVSAPNGDPHVPSLVAVYPTNDWHERETYDFFGLIFDGHPALTRIM 202
Query 199 MPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 203 MPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 240
>gi|345001409|ref|YP_004804263.1| NADH (or F420H2) dehydrogenase subunit C [Streptomyces sp. SirexAA-E]
gi|344317035|gb|AEN11723.1| NADH (or F420H2) dehydrogenase, subunit C [Streptomyces sp. SirexAA-E]
Length=238
Score = 321 bits (823), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 155/234 (67%), Positives = 184/234 (79%), Gaps = 3/234 (1%)
Query 6 QDAQEGRPDSP---TAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDD 62
Q+ G+ +P + EV+ VR+GMFG + GDTSGYG LVR V LPG++ RPYGG+FD+
Sbjct 5 QNTNSGQVPAPVDRSGEVIGVRKGMFGANNGGDTSGYGGLVRTVTLPGATSRPYGGWFDE 64
Query 63 IVDRLAEALRHERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGV 122
+ D L AL + + +A+EK VV R ELT H+ R+ LPRVA+ LRD+P LRFELC GV
Sbjct 65 VADELEGALEEQDLLPSEAIEKTVVDRGELTFHIAREHLPRVARTLRDDPALRFELCTGV 124
Query 123 SGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYD 182
SGVHY + GRELHAVY L+S+TH R +RLEVS PDSDPHIPSL +YPTNDWHERETYD
Sbjct 125 SGVHYLGDKGRELHAVYHLRSLTHGRLIRLEVSTPDSDPHIPSLVEVYPTNDWHERETYD 184
Query 183 FFGIIFDGHPALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
FFG++FDGHPALTRI MPDDWQG PQRKDYPLGGI VEYKGAQIP PD+RR Y+
Sbjct 185 FFGLVFDGHPALTRIMMPDDWQGFPQRKDYPLGGIAVEYKGAQIPAPDQRRSYS 238
>gi|239989932|ref|ZP_04710596.1| NADH dehydrogenase subunit C [Streptomyces roseosporus NRRL 11379]
gi|291446949|ref|ZP_06586339.1| NuoC [Streptomyces roseosporus NRRL 15998]
gi|291349896|gb|EFE76800.1| NuoC [Streptomyces roseosporus NRRL 15998]
Length=241
Score = 321 bits (823), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/224 (69%), Positives = 180/224 (81%), Gaps = 0/224 (0%)
Query 13 PDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALR 72
P EV+ VR+GMFG + GDTSGYG LVR V LPG+S RPYGG+FD++ D L AL
Sbjct 18 PRDTGGEVIRVRKGMFGANNGGDTSGYGGLVRTVTLPGASSRPYGGWFDEVADELEGALE 77
Query 73 HERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETG 132
+ + E+A+E+ VV RDELT H+ R+ L +VA+ LRD+P LRFELC GVSGVH+P + G
Sbjct 78 EQDLLPENAIERTVVDRDELTFHIAREHLLQVARTLRDDPALRFELCTGVSGVHFPGDKG 137
Query 133 RELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHP 192
RELHAVY L+S+TH R +RLEVSAPDSDPHIPSL +YPTNDWHERE YDFFG+IFDGHP
Sbjct 138 RELHAVYHLRSLTHGRLIRLEVSAPDSDPHIPSLVEVYPTNDWHEREAYDFFGLIFDGHP 197
Query 193 ALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
ALTRI MPDDWQG PQRKDYPLGGI VEYKGAQIP PD+RR Y+
Sbjct 198 ALTRIMMPDDWQGFPQRKDYPLGGIAVEYKGAQIPAPDQRRSYS 241
>gi|297159510|gb|ADI09222.1| NADH dehydrogenase subunit C [Streptomyces bingchenggensis BCW-1]
Length=244
Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/219 (71%), Positives = 179/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + V+RGMFG + GDTSGYG LVR V LPG + RPYGG+FD++ D L AL + +
Sbjct 26 GEPIRVQRGMFGANNGGDTSGYGGLVRPVRLPGPASRPYGGWFDEVADELEGALEEQSLV 85
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
E+A+EK VV RDELT H+ R+ LPRVA+ LRD+P LRFELC GVSGVH+P + GRELHA
Sbjct 86 PENAIEKTVVDRDELTFHIAREHLPRVARTLRDDPALRFELCTGVSGVHFPGDKGRELHA 145
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVS PDSDPH+PS+ +YPTNDWHERE YDFFG+IFDGHPALTRI
Sbjct 146 VYHLRSITHNRLIRLEVSVPDSDPHLPSIVDVYPTNDWHEREAYDFFGLIFDGHPALTRI 205
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 206 MMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 244
>gi|29831382|ref|NP_826016.1| NADH dehydrogenase subunit C [Streptomyces avermitilis MA-4680]
gi|29608497|dbj|BAC72551.1| putative NADH dehydrogenase I chain C (complex I) [Streptomyces
avermitilis MA-4680]
Length=248
Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 153/219 (70%), Positives = 178/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + ++RGMFG + GDTSGYG LVR + LPG + RPYGG+FD++ D L AL + +
Sbjct 30 GEEIRLQRGMFGANNGGDTSGYGGLVRSIRLPGPAARPYGGWFDEVADELEGALEEQGLV 89
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
+A+EK VV RDELT H+ R+ L RVAQ LRD+P LRFELC GVS VHY + GRELHA
Sbjct 90 PGNAIEKTVVDRDELTFHIEREYLLRVAQTLRDDPALRFELCTGVSAVHYLEDKGRELHA 149
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVSAPD+DPHIPSL ++YPTNDWHERETYDFFG+IFDGHPALTRI
Sbjct 150 VYHLRSITHNRLIRLEVSAPDADPHIPSLVSVYPTNDWHERETYDFFGLIFDGHPALTRI 209
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 210 MMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 248
>gi|290958258|ref|YP_003489440.1| NADH dehydrogenase subunit NuoC [Streptomyces scabiei 87.22]
gi|260647784|emb|CBG70889.1| NuoC, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
Length=247
Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/219 (70%), Positives = 178/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E + V+RGMFG + GDTSGYG LVR V LPG + RPYGG+FD++ D L AL + +
Sbjct 29 GEEIRVQRGMFGANNGGDTSGYGGLVRSVRLPGEANRPYGGWFDEVADELEGALEEQGLV 88
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
E+ ++K VV R E+T H+ R+ LP VA+ LRD+P LRFELC GVSGVHYP + GRELHA
Sbjct 89 PENVIDKTVVDRGEITFHIEREHLPTVARTLRDDPALRFELCTGVSGVHYPGDKGRELHA 148
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+SITHNR +RLEVSAPD+DPHIPSL +YPTNDWHERETYDFFGI+FDGHPALTRI
Sbjct 149 VYHLRSITHNRLIRLEVSAPDADPHIPSLVPVYPTNDWHERETYDFFGIVFDGHPALTRI 208
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 209 MMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 247
>gi|345008470|ref|YP_004810824.1| NAD(P)H-quinone oxidoreductase subunit J [Streptomyces violaceusniger
Tu 4113]
gi|344034819|gb|AEM80544.1| NAD(P)H-quinone oxidoreductase subunit J [Streptomyces violaceusniger
Tu 4113]
Length=247
Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 154/219 (71%), Positives = 179/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E V V+RGMFG + GDT+GYG LVR V LPG + RPYGG+FD++ D L AL + +
Sbjct 29 GEPVRVQRGMFGANNGGDTTGYGGLVRPVRLPGQATRPYGGWFDEVADELEGALEEQSLL 88
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
E+A+EK VV RDELT H+ R+ LPRVA+ LRD+P LRFELC GVSGVH+P + GRELHA
Sbjct 89 PENAIEKTVVDRDELTFHIAREHLPRVARTLRDDPALRFELCTGVSGVHFPGDKGRELHA 148
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+S+TH R +RLEV APDSDPHIPS+ +YPTNDWHERETYDFFG+IFDGHPALTRI
Sbjct 149 VYHLRSLTHGRVVRLEVCAPDSDPHIPSIVDVYPTNDWHERETYDFFGLIFDGHPALTRI 208
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQG PQRKDYPLGGIPVEYKGAQIP PD+RR Y+
Sbjct 209 MMPDDWQGFPQRKDYPLGGIPVEYKGAQIPAPDQRRSYS 247
>gi|343926373|ref|ZP_08765878.1| NADH-quinone oxidoreductase subunit C [Gordonia alkanivorans
NBRC 16433]
gi|343763611|dbj|GAA12804.1| NADH-quinone oxidoreductase subunit C [Gordonia alkanivorans
NBRC 16433]
Length=229
Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/224 (70%), Positives = 180/224 (81%), Gaps = 3/224 (1%)
Query 13 PDSPTAEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALR 72
P P EV+ VR G+FG GTGDTSGYG L+ + LP SS RPYG YFD+I D L L
Sbjct 9 PKPPDPEVIGVRHGLFGAPGTGDTSGYGGLIDPITLPPSSSRPYGSYFDEIADLLEAELG 68
Query 73 HERVEFEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETG 132
++ AVEKVVV+RDE+T+HV R+ LP VA LR+ P LRFELCLGV+GVHYP +T
Sbjct 69 DS---YDAAVEKVVVFRDEMTVHVAREHLPAVALTLRNAPGLRFELCLGVNGVHYPGDTD 125
Query 133 RELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHP 192
RELHAVYPL S+THNRRLRLEVSAPD+DPHIPSL IYPTNDWHERETYDFFGI+FDGH
Sbjct 126 RELHAVYPLASLTHNRRLRLEVSAPDTDPHIPSLCDIYPTNDWHERETYDFFGIVFDGHR 185
Query 193 ALTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
+LTRIEMPDDW+GHPQRKDYPLGG+P+EYKG ++ PPD RR Y+
Sbjct 186 SLTRIEMPDDWEGHPQRKDYPLGGVPIEYKGTRVDPPDRRRSYS 229
>gi|328884314|emb|CCA57553.1| NADH-ubiquinone oxidoreductase chain C [Streptomyces venezuelae
ATCC 10712]
Length=243
Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/219 (70%), Positives = 178/219 (82%), Gaps = 0/219 (0%)
Query 18 AEVVDVRRGMFGVSGTGDTSGYGRLVRQVVLPGSSPRPYGGYFDDIVDRLAEALRHERVE 77
E V V+RGMFG + GDTSGYG LVR + LPG + RPYGG+FD++ D L AL + +
Sbjct 25 GEEVRVQRGMFGANNGGDTSGYGGLVRSIRLPGPAARPYGGWFDEVADELEGALEEQGLL 84
Query 78 FEDAVEKVVVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHA 137
++A+EK VV R ELT H+ R+ L RVA+ LRD+P LRFELC GVSGVHYP + GRELHA
Sbjct 85 PDNAIEKTVVDRGELTFHIEREHLVRVARTLRDDPALRFELCTGVSGVHYPGDKGRELHA 144
Query 138 VYPLQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRI 197
VY L+S+TH R +RLEVSAPD+DPHIPSL A+YPTNDWHERE YDFFGI+FDGHPALTRI
Sbjct 145 VYHLRSLTHGRLIRLEVSAPDADPHIPSLVAVYPTNDWHEREAYDFFGIVFDGHPALTRI 204
Query 198 EMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN 236
MPDDWQGHPQRKDYPLGGI VEYKGAQIP PD+RR Y+
Sbjct 205 MMPDDWQGHPQRKDYPLGGIAVEYKGAQIPAPDQRRSYS 243
Lambda K H
0.319 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 319551017258
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40