BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3148 Length=440 Score E Sequences producing significant alignments: (Bits) Value gi|15610284|ref|NP_217664.1| NADH dehydrogenase subunit D [Mycob... 905 0.0 gi|308376001|ref|ZP_07445802.2| NADH dehydrogenase subunit I D n... 905 0.0 gi|298526622|ref|ZP_07014031.1| NADH-quinone oxidoreductase subu... 904 0.0 gi|254552239|ref|ZP_05142686.1| NADH dehydrogenase subunit D [My... 904 0.0 gi|240169667|ref|ZP_04748326.1| NADH dehydrogenase subunit D [My... 833 0.0 gi|41409302|ref|NP_962138.1| NADH dehydrogenase subunit D [Mycob... 832 0.0 gi|296169189|ref|ZP_06850842.1| NADH-quinone oxidoreductase subu... 827 0.0 gi|183981495|ref|YP_001849786.1| NADH dehydrogenase I (chain D) ... 827 0.0 gi|118617949|ref|YP_906281.1| NADH dehydrogenase subunit D [Myco... 825 0.0 gi|13883046|gb|AAK47575.1| NADH dehydrogenase I, D subunit [Myco... 823 0.0 gi|254821137|ref|ZP_05226138.1| NADH dehydrogenase subunit D [My... 819 0.0 gi|342861056|ref|ZP_08717705.1| NADH dehydrogenase subunit D [My... 817 0.0 gi|289751826|ref|ZP_06511204.1| NADH dehydrogenase subunit I D n... 764 0.0 gi|262200417|ref|YP_003271625.1| NADH dehydrogenase I subunit D ... 735 0.0 gi|120402880|ref|YP_952709.1| NADH dehydrogenase subunit D [Myco... 734 0.0 gi|169629223|ref|YP_001702872.1| NADH dehydrogenase subunit D [M... 730 0.0 gi|108798547|ref|YP_638744.1| NADH dehydrogenase subunit D [Myco... 730 0.0 gi|315445432|ref|YP_004078311.1| NADH dehydrogenase subunit D [M... 730 0.0 gi|145225063|ref|YP_001135741.1| NADH dehydrogenase subunit D [M... 728 0.0 gi|229490893|ref|ZP_04384728.1| NADH dehydrogenase, d subunit [R... 722 0.0 gi|226306211|ref|YP_002766171.1| NADH-quinone oxidoreductase cha... 721 0.0 gi|333922081|ref|YP_004495662.1| NADH-quinone oxidoreductase sub... 720 0.0 gi|226365383|ref|YP_002783166.1| NADH dehydrogenase subunit D [R... 716 0.0 gi|111022875|ref|YP_705847.1| NADH dehydrogenase subunit D [Rhod... 713 0.0 gi|54024633|ref|YP_118875.1| NADH dehydrogenase subunit D [Nocar... 709 0.0 gi|325673382|ref|ZP_08153073.1| NADH-quinone oxidoreductase subu... 709 0.0 gi|312139312|ref|YP_004006648.1| NADH dehydrogenase (quinone) ch... 709 0.0 gi|118473895|ref|YP_886421.1| NADH dehydrogenase subunit D [Myco... 707 0.0 gi|343926372|ref|ZP_08765877.1| NADH-quinone oxidoreductase subu... 706 0.0 gi|326382760|ref|ZP_08204450.1| NADH dehydrogenase subunit D [Go... 695 0.0 gi|333991502|ref|YP_004524116.1| NADH dehydrogenase I (chain D) ... 688 0.0 gi|319950454|ref|ZP_08024368.1| NADH dehydrogenase subunit D [Di... 681 0.0 gi|297159511|gb|ADI09223.1| NADH dehydrogenase subunit D [Strept... 677 0.0 gi|302553429|ref|ZP_07305771.1| NADH dehydrogenase (quinone), D ... 676 0.0 gi|302536171|ref|ZP_07288513.1| NADH dehydrogenase (quinone), D ... 676 0.0 gi|289769831|ref|ZP_06529209.1| NADH dehydrogenase (quinone), D ... 674 0.0 gi|254382440|ref|ZP_04997799.1| NADH dehydrogenase subunit D [St... 674 0.0 gi|21222948|ref|NP_628727.1| NADH dehydrogenase subunit D [Strep... 673 0.0 gi|302559104|ref|ZP_07311446.1| NADH dehydrogenase (quinone), D ... 671 0.0 gi|329935994|ref|ZP_08285794.1| NADH dehydrogenase subunit NuoD ... 671 0.0 gi|29831383|ref|NP_826017.1| NADH dehydrogenase subunit D [Strep... 670 0.0 gi|297192785|ref|ZP_06910183.1| NADH dehydrogenase subunit D (Nu... 670 0.0 gi|290958257|ref|YP_003489439.1| NADH dehydrogenase subunit NuoD... 669 0.0 gi|294630799|ref|ZP_06709359.1| NADH dehydrogenase, D subunit [S... 667 0.0 gi|182436774|ref|YP_001824493.1| NADH dehydrogenase subunit D [S... 665 0.0 gi|320009201|gb|ADW04051.1| NADH dehydrogenase I, D subunit [Str... 665 0.0 gi|328884315|emb|CCA57554.1| NADH-ubiquinone oxidoreductase chai... 665 0.0 gi|296140854|ref|YP_003648097.1| NADH dehydrogenase I subunit D ... 664 0.0 gi|345001410|ref|YP_004804264.1| NADH dehydrogenase I, D subunit... 663 0.0 gi|254391140|ref|ZP_05006347.1| NADH dehydrogenase subunit D [St... 663 0.0 >gi|15610284|ref|NP_217664.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis H37Rv] gi|31794324|ref|NP_856817.1| NADH dehydrogenase subunit D [Mycobacterium bovis AF2122/97] gi|121639031|ref|YP_979255.1| NADH dehydrogenase subunit D [Mycobacterium bovis BCG str. Pasteur 1173P2] 74 more sequence titles Length=440 Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/440 (100%), Positives = 440/440 (100%), Gaps = 0/440 (0%) Query 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI Sbjct 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 Query 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI Sbjct 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 Query 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG Sbjct 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 Query 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD Sbjct 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 Query 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE Sbjct 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 Query 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK Sbjct 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 Query 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM Sbjct 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 Query 421 VADLIAAVASIDPVMGGVDR 440 VADLIAAVASIDPVMGGVDR Sbjct 421 VADLIAAVASIDPVMGGVDR 440 >gi|308376001|ref|ZP_07445802.2| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis SUMu007] gi|308344468|gb|EFP33319.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis SUMu007] Length=441 Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/440 (100%), Positives = 440/440 (100%), Gaps = 0/440 (0%) Query 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI Sbjct 2 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 61 Query 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI Sbjct 62 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 121 Query 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG Sbjct 122 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 181 Query 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD Sbjct 182 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 241 Query 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE Sbjct 242 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 301 Query 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK Sbjct 302 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 361 Query 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM Sbjct 362 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 421 Query 421 VADLIAAVASIDPVMGGVDR 440 VADLIAAVASIDPVMGGVDR Sbjct 422 VADLIAAVASIDPVMGGVDR 441 >gi|298526622|ref|ZP_07014031.1| NADH-quinone oxidoreductase subunit D [Mycobacterium tuberculosis 94_M4241A] gi|298496416|gb|EFI31710.1| NADH-quinone oxidoreductase subunit D [Mycobacterium tuberculosis 94_M4241A] Length=440 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/440 (99%), Positives = 440/440 (100%), Gaps = 0/440 (0%) Query 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI Sbjct 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 Query 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 EGETVV+ARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI Sbjct 61 EGETVVDARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 Query 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG Sbjct 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 Query 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD Sbjct 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 Query 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE Sbjct 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 Query 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK Sbjct 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 Query 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM Sbjct 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 Query 421 VADLIAAVASIDPVMGGVDR 440 VADLIAAVASIDPVMGGVDR Sbjct 421 VADLIAAVASIDPVMGGVDR 440 >gi|254552239|ref|ZP_05142686.1| NADH dehydrogenase subunit D [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289763331|ref|ZP_06522709.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase chain D) [Mycobacterium tuberculosis GM 1503] gi|289710837|gb|EFD74853.1| NADH dehydrogenase I (chain D) nuoD (NADH-ubiquinone oxidoreductase chain D) [Mycobacterium tuberculosis GM 1503] Length=440 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/440 (99%), Positives = 439/440 (99%), Gaps = 0/440 (0%) Query 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI Sbjct 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 Query 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI Sbjct 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 Query 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG Sbjct 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 Query 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD Sbjct 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 Query 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE Sbjct 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 Query 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK Sbjct 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 Query 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 LVTEGIRVPAGQVYVAVESPRGELGVHMVSD GTRPYRVHYRDPSFTNLQSVAAMCEGGM Sbjct 361 LVTEGIRVPAGQVYVAVESPRGELGVHMVSDAGTRPYRVHYRDPSFTNLQSVAAMCEGGM 420 Query 421 VADLIAAVASIDPVMGGVDR 440 VADLIAAVASIDPVMGGVDR Sbjct 421 VADLIAAVASIDPVMGGVDR 440 >gi|240169667|ref|ZP_04748326.1| NADH dehydrogenase subunit D [Mycobacterium kansasii ATCC 12478] Length=432 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/428 (92%), Positives = 417/428 (98%), Gaps = 0/428 (0%) Query 13 ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGI 72 +T+LVAGGQDW+ +VDAAR ADPGERIVVNMGPQHPSTHGVLRLILEIEGET++EARCGI Sbjct 5 DTILVAGGQDWEDIVDAARKADPGERIVVNMGPQHPSTHGVLRLILEIEGETIIEARCGI 64 Query 73 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 132 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPERVNVIR Sbjct 65 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDQIPERVNVIR 124 Query 133 VLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGG 192 VL+MELNRISSHLVALATGGMELGAMT MF+GFRAREI+L +FE ITGLRMN AYIRPGG Sbjct 125 VLLMELNRISSHLVALATGGMELGAMTAMFIGFRAREIILNVFESITGLRMNHAYIRPGG 184 Query 193 VAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGP 252 VAQDLPPNA T+IAEAL QLRQPLRE+G+LLNENAIWKARTQG+GYLDLTGCMALGITGP Sbjct 185 VAQDLPPNAVTDIAEALNQLRQPLRELGDLLNENAIWKARTQGIGYLDLTGCMALGITGP 244 Query 253 ILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKL 312 ILRSTGLPHDLRKSEPYCGY++YEFDVITDD+CDAYGRYMIRVKEMWES+KIVEQCLDKL Sbjct 245 ILRSTGLPHDLRKSEPYCGYENYEFDVITDDACDAYGRYMIRVKEMWESVKIVEQCLDKL 304 Query 313 RPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 372 +PGPTMI DRK+AWPADL+VGPDG+GNSP+HIAKIMGSSMEALIHHFKLVTEGIRVP GQ Sbjct 305 KPGPTMIEDRKIAWPADLKVGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVPPGQ 364 Query 373 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASID 432 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVADLI AVASID Sbjct 365 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADLITAVASID 424 Query 433 PVMGGVDR 440 PVMGGVDR Sbjct 425 PVMGGVDR 432 >gi|41409302|ref|NP_962138.1| NADH dehydrogenase subunit D [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466708|ref|YP_883188.1| NADH dehydrogenase subunit D [Mycobacterium avium 104] gi|254776458|ref|ZP_05217974.1| NADH dehydrogenase subunit D [Mycobacterium avium subsp. avium ATCC 25291] gi|81700408|sp|Q73V12.1|NUOD_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|218534420|sp|A0QJV0.1|NUOD_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|41398122|gb|AAS05752.1| NuoD [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167995|gb|ABK68892.1| NADH dehydrogenase i, d subunit [Mycobacterium avium 104] gi|336459343|gb|EGO38286.1| NADH dehydrogenase I, D subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=441 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/439 (91%), Positives = 418/439 (96%), Gaps = 0/439 (0%) Query 2 TAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIE 61 T + GAGET++VAGGQDW +VV+AARSADPGERIVVNMGPQHPSTHGVLRLILEIE Sbjct 3 TTTESTHDGAGETLVVAGGQDWDKVVEAARSADPGERIVVNMGPQHPSTHGVLRLILEIE 62 Query 62 GETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 121 GETV EARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT Sbjct 63 GETVTEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 122 Query 122 DEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGL 181 D+IPERVNVIRV+MMELNRISSHLVALATGGMELGAMTPMFVGFR REIVLTLFE ITGL Sbjct 123 DQIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVLTLFESITGL 182 Query 182 RMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDL 241 RMNSAYIRPGGVAQDLPPNA TEIA+AL QLRQPLREMG+LLNENAIWKARTQ +GYLDL Sbjct 183 RMNSAYIRPGGVAQDLPPNAKTEIAQALDQLRQPLREMGDLLNENAIWKARTQDIGYLDL 242 Query 242 TGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWES 301 TGCMALGITGPILR+TGLPHDLRKSEPYCGY++YEFDVIT D+CDAYGRYMIRVKEMWES Sbjct 243 TGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVITADTCDAYGRYMIRVKEMWES 302 Query 302 MKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKL 361 +KIVEQCLDKL+PGP M+ + K+AWPADL+VGPDGLGNSP+HIAKIMG SMEALIHHFKL Sbjct 303 IKIVEQCLDKLQPGPIMVENGKIAWPADLKVGPDGLGNSPEHIAKIMGGSMEALIHHFKL 362 Query 362 VTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 421 VTEGIRVP GQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV Sbjct 363 VTEGIRVPPGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 422 Query 422 ADLIAAVASIDPVMGGVDR 440 ADLI AVASIDPVMGGVDR Sbjct 423 ADLITAVASIDPVMGGVDR 441 >gi|296169189|ref|ZP_06850842.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896087|gb|EFG75754.1| NADH-quinone oxidoreductase subunit C/D [Mycobacterium parascrofulaceum ATCC BAA-614] Length=445 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/445 (89%), Positives = 419/445 (95%), Gaps = 5/445 (1%) Query 1 MTAIADSAGGAG-----ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLR 55 M+ I DS G G ETVLVAGGQDW Q+VDAAR+ADPGERIVVNMGPQHPSTHGVLR Sbjct 1 MSTITDSTNGGGGAESPETVLVAGGQDWDQIVDAARNADPGERIVVNMGPQHPSTHGVLR 60 Query 56 LILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVE 115 LILEIEGETV E RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVE Sbjct 61 LILEIEGETVTEVRCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVE 120 Query 116 KLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLF 175 KLLGIT+EIPERVNVIRV+MMELNRISSHLVALATGGMELGAMTPMFVGFR REIVLTLF Sbjct 121 KLLGITEEIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVLTLF 180 Query 176 EKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQG 235 EKI+GLRMNSAYIRPGGVAQDLPP A +++AEALK LRQ LREMG+LLNENAIWKARTQ Sbjct 181 EKISGLRMNSAYIRPGGVAQDLPPGAESDVAEALKPLRQVLREMGDLLNENAIWKARTQD 240 Query 236 VGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRV 295 VGYLDLTGCMALGITGPILR+TGLPHDLRKSEPYCGY++YEFDV+T D+CDAYGRYMIRV Sbjct 241 VGYLDLTGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVMTADTCDAYGRYMIRV 300 Query 296 KEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEAL 355 EMWES+KI+EQCLDKL+PGP M+ DRK+AWPADL+VGPDG+GNS +HIAKIMGSSMEAL Sbjct 301 NEMWESIKIIEQCLDKLKPGPIMVEDRKIAWPADLKVGPDGMGNSEEHIAKIMGSSMEAL 360 Query 356 IHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAM 415 IHHFKLVTEGIRVPAGQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAM Sbjct 361 IHHFKLVTEGIRVPAGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAM 420 Query 416 CEGGMVADLIAAVASIDPVMGGVDR 440 CEGGMVADLI AVASIDPVMGGVDR Sbjct 421 CEGGMVADLITAVASIDPVMGGVDR 445 >gi|183981495|ref|YP_001849786.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone oxidoreductase chain D) [Mycobacterium marinum M] gi|218534424|sp|B2HGE5.1|NUOD_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|183174821|gb|ACC39931.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone oxidoreductase chain D) [Mycobacterium marinum M] Length=432 Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/428 (93%), Positives = 413/428 (97%), Gaps = 0/428 (0%) Query 13 ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGI 72 ETVLVAGGQDW ++V+AAR ADPGERIVVNMGPQHPSTHGVLRLILEIEGETV EARCGI Sbjct 5 ETVLVAGGQDWNEIVEAARGADPGERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGI 64 Query 73 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 132 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR Sbjct 65 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 124 Query 133 VLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGG 192 V+MMELNRISSHLVALATGGMELGAMTPMFVGFRAREI+L+LFE ITGLRMNSAYIRPGG Sbjct 125 VMMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIILSLFESITGLRMNSAYIRPGG 184 Query 193 VAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGP 252 VAQDLPP+ TEIA+A+ LRQPLREMG+LLNENAIWKARTQ VGYLDL GCMALGITGP Sbjct 185 VAQDLPPDGPTEIAKAIADLRQPLREMGDLLNENAIWKARTQDVGYLDLAGCMALGITGP 244 Query 253 ILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKL 312 ILRSTGLPHDLRKSEPYCGY++YEFDVIT D CDAYGRYMIRVKEMWES+KIVEQCLD+L Sbjct 245 ILRSTGLPHDLRKSEPYCGYENYEFDVITADGCDAYGRYMIRVKEMWESIKIVEQCLDRL 304 Query 313 RPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 372 RPGPTMI DRKLAWPADL+VGPDG+GNSP+HIAKIMGSSMEALIHHFKLVTEGIRVPAGQ Sbjct 305 RPGPTMIEDRKLAWPADLKVGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 364 Query 373 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASID 432 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAM EGGMVADLI AVASID Sbjct 365 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMSEGGMVADLITAVASID 424 Query 433 PVMGGVDR 440 PVMGGVDR Sbjct 425 PVMGGVDR 432 >gi|118617949|ref|YP_906281.1| NADH dehydrogenase subunit D [Mycobacterium ulcerans Agy99] gi|218534429|sp|A0PR41.1|NUOD_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|118570059|gb|ABL04810.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone oxidoreductase chain D) [Mycobacterium ulcerans Agy99] Length=432 Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/428 (93%), Positives = 412/428 (97%), Gaps = 0/428 (0%) Query 13 ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGI 72 ETVLVAGGQDW ++V+AAR ADPGERIVVNMGPQHPSTHGVLRLILEIEGETV EARCGI Sbjct 5 ETVLVAGGQDWNEIVEAARGADPGERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGI 64 Query 73 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 132 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR Sbjct 65 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 124 Query 133 VLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGG 192 V+MMELNRISSHLVALA GGMELGAMTPMFVGFRAREI+L+LFE ITGLRMNSAYIRPGG Sbjct 125 VMMMELNRISSHLVALAAGGMELGAMTPMFVGFRAREIILSLFESITGLRMNSAYIRPGG 184 Query 193 VAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGP 252 VAQDLPP+ TEIA+A+ LRQPLREMG+LLNENAIWKARTQ VGYLDL GCMALGITGP Sbjct 185 VAQDLPPDRPTEIAKAIADLRQPLREMGDLLNENAIWKARTQDVGYLDLAGCMALGITGP 244 Query 253 ILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKL 312 ILRSTGLPHDLRKSEPYCGY++YEFDVIT D CDAYGRYMIRVKEMWES+KIVEQCLD+L Sbjct 245 ILRSTGLPHDLRKSEPYCGYENYEFDVITADGCDAYGRYMIRVKEMWESIKIVEQCLDRL 304 Query 313 RPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 372 RPGPTMI DRKLAWPADL+VGPDG+GNSP+HIAKIMGSSMEALIHHFKLVTEGIRVPAGQ Sbjct 305 RPGPTMIEDRKLAWPADLKVGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 364 Query 373 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASID 432 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAM EGGMVADLI AVASID Sbjct 365 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMSEGGMVADLITAVASID 424 Query 433 PVMGGVDR 440 PVMGGVDR Sbjct 425 PVMGGVDR 432 >gi|13883046|gb|AAK47575.1| NADH dehydrogenase I, D subunit [Mycobacterium tuberculosis CDC1551] Length=398 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/398 (100%), Positives = 398/398 (100%), Gaps = 0/398 (0%) Query 43 MGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLS 102 MGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLS Sbjct 1 MGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLS 60 Query 103 PFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMF 162 PFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMF Sbjct 61 PFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMF 120 Query 163 VGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGEL 222 VGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGEL Sbjct 121 VGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGEL 180 Query 223 LNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITD 282 LNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITD Sbjct 181 LNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITD 240 Query 283 DSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPK 342 DSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPK Sbjct 241 DSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPK 300 Query 343 HIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYR 402 HIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYR Sbjct 301 HIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYR 360 Query 403 DPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440 DPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR Sbjct 361 DPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 398 >gi|254821137|ref|ZP_05226138.1| NADH dehydrogenase subunit D [Mycobacterium intracellulare ATCC 13950] Length=441 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/439 (89%), Positives = 416/439 (95%), Gaps = 0/439 (0%) Query 2 TAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIE 61 T + GAGET++VAGGQDW +VV+AAR+ADPGERIVVNMGPQHPSTHGVLRLILEIE Sbjct 3 TTTESTHDGAGETLVVAGGQDWDKVVEAARNADPGERIVVNMGPQHPSTHGVLRLILEIE 62 Query 62 GETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 121 GETV +ARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYL+PFFNETAYCLGVEKLLGIT Sbjct 63 GETVTDARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLAPFFNETAYCLGVEKLLGIT 122 Query 122 DEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGL 181 D+IPERV+VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFR REIVLTLFE ITGL Sbjct 123 DQIPERVDVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVLTLFESITGL 182 Query 182 RMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDL 241 RMNS YIRPGGVAQDLPPNA TEIAEAL+ LR+ LREM LLNENAIWKARTQ VGYLDL Sbjct 183 RMNSNYIRPGGVAQDLPPNAQTEIAEALEPLREVLREMSGLLNENAIWKARTQDVGYLDL 242 Query 242 TGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWES 301 TGCMALGITGPILR+TGLPHDLRKSEPYCGY++YEFDVIT+D+CDAYGRYMIRV EMWES Sbjct 243 TGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVITEDTCDAYGRYMIRVNEMWES 302 Query 302 MKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKL 361 +KIVEQCLDKL+PGPTM+ DRK+AWPADL+VGPDG+GNSP+HIAKIMG SMEALIHHFKL Sbjct 303 IKIVEQCLDKLKPGPTMVEDRKIAWPADLKVGPDGMGNSPEHIAKIMGGSMEALIHHFKL 362 Query 362 VTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 421 VTEGIRVP GQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGG+V Sbjct 363 VTEGIRVPPGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGLV 422 Query 422 ADLIAAVASIDPVMGGVDR 440 ADLI +VASIDPVMGGVDR Sbjct 423 ADLITSVASIDPVMGGVDR 441 >gi|342861056|ref|ZP_08717705.1| NADH dehydrogenase subunit D [Mycobacterium colombiense CECT 3035] gi|342131500|gb|EGT84770.1| NADH dehydrogenase subunit D [Mycobacterium colombiense CECT 3035] Length=441 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/439 (89%), Positives = 410/439 (94%), Gaps = 0/439 (0%) Query 2 TAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIE 61 T + GAGET +VAGGQDW +VV+AAR DPGERIVVNMGPQHPSTHGVLRLILEIE Sbjct 3 TTTESTHDGAGETFVVAGGQDWDKVVEAARGVDPGERIVVNMGPQHPSTHGVLRLILEIE 62 Query 62 GETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 121 GETV + RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT Sbjct 63 GETVTDVRCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 122 Query 122 DEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGL 181 D+IPERVNVIRV+MMELNRISSHLVALATGGMELGAMTPMFVGFR REIVLTLFE ITGL Sbjct 123 DQIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVLTLFESITGL 182 Query 182 RMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDL 241 RMNSAY+RPGGVAQDLPPNA EI E LK L+Q LREM LLNENAIWKARTQ VGYLDL Sbjct 183 RMNSAYVRPGGVAQDLPPNAEAEIVEGLKGLKQVLREMSGLLNENAIWKARTQDVGYLDL 242 Query 242 TGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWES 301 TGCMALGITGPILR+TGLPHDLRKSEPYCGY++YEFDVIT+D+CDAYGRYMIRV EMWES Sbjct 243 TGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVITEDTCDAYGRYMIRVNEMWES 302 Query 302 MKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKL 361 +KIVEQCLDKL+PGPTM+ DRK+AWPADL+VGPDG+GNS +HIAKIMG SMEALIHHFKL Sbjct 303 IKIVEQCLDKLKPGPTMVEDRKIAWPADLKVGPDGMGNSQEHIAKIMGGSMEALIHHFKL 362 Query 362 VTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 421 VTEGIRVPAGQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV Sbjct 363 VTEGIRVPAGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 422 Query 422 ADLIAAVASIDPVMGGVDR 440 ADLI AVASIDPVMGGVDR Sbjct 423 ADLITAVASIDPVMGGVDR 441 >gi|289751826|ref|ZP_06511204.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis T92] gi|289692413|gb|EFD59842.1| NADH dehydrogenase subunit I D nuoD [Mycobacterium tuberculosis T92] Length=424 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/371 (100%), Positives = 371/371 (100%), Gaps = 0/371 (0%) Query 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI Sbjct 1 MTAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEI 60 Query 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI Sbjct 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 Query 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG Sbjct 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 Query 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD Sbjct 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 Query 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE Sbjct 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 Query 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK Sbjct 301 SMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFK 360 Query 361 LVTEGIRVPAG 371 LVTEGIRVPAG Sbjct 361 LVTEGIRVPAG 371 >gi|262200417|ref|YP_003271625.1| NADH dehydrogenase I subunit D [Gordonia bronchialis DSM 43247] gi|262083764|gb|ACY19732.1| NADH dehydrogenase I, D subunit [Gordonia bronchialis DSM 43247] Length=446 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/443 (80%), Positives = 392/443 (89%), Gaps = 4/443 (0%) Query 2 TAIADSAGGAGETVLVAGGQDWQQVVDAARS---ADPG-ERIVVNMGPQHPSTHGVLRLI 57 T + G GQDW+Q+V R+ PG ERIVVNMGPQHPSTHGVLRLI Sbjct 4 TTTGHAPGPKATRTYTVTGQDWEQIVSDVRTRAEQQPGDERIVVNMGPQHPSTHGVLRLI 63 Query 58 LEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKL 117 LEIEGETV EARCGIGYLHTGIEKNLE+R WTQGVTFVTRMDYLSPFFNETAYCLGVEKL Sbjct 64 LEIEGETVTEARCGIGYLHTGIEKNLEFRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKL 123 Query 118 LGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEK 177 LGITD+IPER VIRV+MMELNRI+SHLVALATGGMELGA+T MF+GFR RE++L LFE Sbjct 124 LGITDDIPERATVIRVMMMELNRITSHLVALATGGMELGAVTAMFLGFREREMILDLFEL 183 Query 178 ITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVG 237 ITGLRMN AYIRPGGVAQDLP + ++AE L+ L L E+G+LLN+N IWKARTQGVG Sbjct 184 ITGLRMNHAYIRPGGVAQDLPSDGVDKVAEVLEILPGRLDELGDLLNDNYIWKARTQGVG 243 Query 238 YLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKE 297 YLDLTGCMALGITGP+LRSTGLPHDLRKS+PYCGY++Y+FDVITD +CD+YGRY+IRVKE Sbjct 244 YLDLTGCMALGITGPVLRSTGLPHDLRKSQPYCGYENYDFDVITDTTCDSYGRYLIRVKE 303 Query 298 MWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIH 357 M ES+KIV QCL++LRPGP M++DRK+AWPADL +GPDGLGNSP+HIA+IMG+SMEALIH Sbjct 304 MRESIKIVRQCLERLRPGPVMVADRKIAWPADLALGPDGLGNSPEHIARIMGTSMEALIH 363 Query 358 HFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCE 417 HFKLVTEG+RVPAGQ YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCE Sbjct 364 HFKLVTEGMRVPAGQCYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCE 423 Query 418 GGMVADLIAAVASIDPVMGGVDR 440 GGMVAD+I AVASIDPVMGGVDR Sbjct 424 GGMVADVITAVASIDPVMGGVDR 446 >gi|120402880|ref|YP_952709.1| NADH dehydrogenase subunit D [Mycobacterium vanbaalenii PYR-1] gi|218534433|sp|A1T6A3.1|NUOD_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|119955698|gb|ABM12703.1| NADH dehydrogenase subunit D [Mycobacterium vanbaalenii PYR-1] Length=442 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/434 (82%), Positives = 389/434 (90%), Gaps = 6/434 (1%) Query 13 ETVLVAGGQDWQQVVDAAR---SADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEAR 69 E V+V GGQDW QVV AAR + GERIVVNMGPQHPSTHGVLRLILEIEGE +VEAR Sbjct 9 ERVVVVGGQDWDQVVAAARQNAAEHAGERIVVNMGPQHPSTHGVLRLILEIEGEIIVEAR 68 Query 70 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 129 CGIGYLHTGIEKNLE+R WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD IPER + Sbjct 69 CGIGYLHTGIEKNLEFRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDAIPERAS 128 Query 130 VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIR 189 VIRV+MMELNRISSHLVALATGGMELGAMT MF+GFR RE++L++FE ITGLRMN+AYIR Sbjct 129 VIRVMMMELNRISSHLVALATGGMELGAMTAMFLGFRERELILSVFETITGLRMNNAYIR 188 Query 190 PGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGI 249 PGGVA DLP A ++ + L L + LR+M +LLNEN IWKARTQG+GYLDLTGCMALGI Sbjct 189 PGGVAADLPDEALPQVRDLLTLLPKRLRDMEDLLNENYIWKARTQGIGYLDLTGCMALGI 248 Query 250 TGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCL 309 TGP+LRSTGLPHDLRK++PYCGY+ Y+FDV+TDD CD+YGRY+IRVKEM +S++IVEQC+ Sbjct 249 TGPVLRSTGLPHDLRKAQPYCGYETYDFDVVTDDQCDSYGRYLIRVKEMHQSIRIVEQCV 308 Query 310 DKLRP---GPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGI 366 +L P MI+D+KLAWPADL+VGPDGLGNSP+HIAKIMG SME LIHHFKLVTEGI Sbjct 309 QRLERSVGAPVMITDKKLAWPADLKVGPDGLGNSPEHIAKIMGHSMEGLIHHFKLVTEGI 368 Query 367 RVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIA 426 RVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVAD I Sbjct 369 RVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAIT 428 Query 427 AVASIDPVMGGVDR 440 AVASIDPVMGGVDR Sbjct 429 AVASIDPVMGGVDR 442 >gi|169629223|ref|YP_001702872.1| NADH dehydrogenase subunit D [Mycobacterium abscessus ATCC 19977] gi|218534421|sp|B1MPG7.1|NUOD_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|169241190|emb|CAM62218.1| NADH-quinone oxidoreductase, D subunit NuoD [Mycobacterium abscessus] Length=432 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/428 (82%), Positives = 384/428 (90%), Gaps = 1/428 (0%) Query 13 ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGI 72 E L+AGGQDW ++V AA A ERIVVNMGPQHPSTHGVLRLILEIEGETV + RCGI Sbjct 6 EIHLMAGGQDWDEIVTAAGQA-TDERIVVNMGPQHPSTHGVLRLILEIEGETVTDVRCGI 64 Query 73 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 132 GYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVE+LLGI DEIPER NVIR Sbjct 65 GYLHTGIEKNLEYRTWTQGVTFVTRMDYLSPFFNETAYCLGVEQLLGIADEIPERANVIR 124 Query 133 VLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGG 192 VLMMELNRISSHLVALATGGMELGAMT MF+GFR RE++L +FE ITGLRMN AY+RPGG Sbjct 125 VLMMELNRISSHLVALATGGMELGAMTAMFLGFREREMILKVFEAITGLRMNHAYVRPGG 184 Query 193 VAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGP 252 +AQDLP A E+ + L+ L LR+M LLNEN IWKARTQGVGYLDLTGCMALGITGP Sbjct 185 LAQDLPDGAEQEVRDLLEILPGRLRDMENLLNENYIWKARTQGVGYLDLTGCMALGITGP 244 Query 253 ILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKL 312 +LR+TGL HDLR+++PYCGY++Y+FDV+T CD+YGRY+IRVKEM ES+KI +QC+D+L Sbjct 245 VLRATGLAHDLRRAQPYCGYENYDFDVVTHQDCDSYGRYLIRVKEMHESIKIAQQCVDRL 304 Query 313 RPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 372 RPGP M+ D+K+AWPADL GPDGLGNSPKHIAKIMG+SME LIHHFKLVTEG+RVPAGQ Sbjct 305 RPGPVMVDDKKIAWPADLASGPDGLGNSPKHIAKIMGTSMEGLIHHFKLVTEGVRVPAGQ 364 Query 373 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASID 432 VYVA+ESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQSVAAMCEG MVADLIAAVASID Sbjct 365 VYVAIESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQSVAAMCEGAMVADLIAAVASID 424 Query 433 PVMGGVDR 440 PVMGGVDR Sbjct 425 PVMGGVDR 432 >gi|108798547|ref|YP_638744.1| NADH dehydrogenase subunit D [Mycobacterium sp. MCS] gi|119867647|ref|YP_937599.1| NADH dehydrogenase subunit D [Mycobacterium sp. KMS] gi|126434145|ref|YP_001069836.1| NADH dehydrogenase subunit D [Mycobacterium sp. JLS] 6 more sequence titles Length=446 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/428 (83%), Positives = 387/428 (91%), Gaps = 0/428 (0%) Query 13 ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGI 72 +TV+V GG+DW+QVV AA A GERIVVNMGPQHPSTHGVLRLILEIEGET+ EARCGI Sbjct 19 DTVIVVGGEDWEQVVAAAEQAQAGERIVVNMGPQHPSTHGVLRLILEIEGETITEARCGI 78 Query 73 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 132 GYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLG+TD IPERVNVIR Sbjct 79 GYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGVTDAIPERVNVIR 138 Query 133 VLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGG 192 V++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L++FE ITGLRMN AYIRPGG Sbjct 139 VMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILSVFEMITGLRMNHAYIRPGG 198 Query 193 VAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGP 252 +A DLP A I E L L LR++ LLNEN IWKARTQG+GYLDL GCMALGITGP Sbjct 199 LAADLPDGAVPRIRELLALLPGRLRDLENLLNENYIWKARTQGIGYLDLAGCMALGITGP 258 Query 253 ILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKL 312 +LRSTGLPHDLR+++PYCGY+ YEFDVITDD CDAYGRY+IRVKEM ES+KIVEQC+D+L Sbjct 259 VLRSTGLPHDLRRAQPYCGYEDYEFDVITDDGCDAYGRYLIRVKEMRESLKIVEQCVDRL 318 Query 313 RPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 372 +PGP MI+D+KLAWPADL++GPDGLGNSP HIA+IMG SME LIHHFKLVTEGIRVPAGQ Sbjct 319 KPGPVMIADKKLAWPADLELGPDGLGNSPAHIARIMGQSMEGLIHHFKLVTEGIRVPAGQ 378 Query 373 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASID 432 VY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVAD I+AVASID Sbjct 379 VYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAISAVASID 438 Query 433 PVMGGVDR 440 PVMGGVDR Sbjct 439 PVMGGVDR 446 >gi|315445432|ref|YP_004078311.1| NADH dehydrogenase subunit D [Mycobacterium sp. Spyr1] gi|315263735|gb|ADU00477.1| NADH dehydrogenase subunit D [Mycobacterium sp. Spyr1] Length=442 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/434 (83%), Positives = 387/434 (90%), Gaps = 6/434 (1%) Query 13 ETVLVAGGQDWQQVVDAAR---SADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEAR 69 E V+V GGQDW QVV AAR + GERIVVNMGPQHPSTHGVLRLILEIEGET+VEAR Sbjct 9 ERVIVVGGQDWDQVVTAARENAAEHAGERIVVNMGPQHPSTHGVLRLILEIEGETIVEAR 68 Query 70 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 129 CGIGYLHTGIEKNLE+R WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLG+TD+IPER + Sbjct 69 CGIGYLHTGIEKNLEFRTWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGVTDDIPERAS 128 Query 130 VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIR 189 VIRV+MMELNRISSHLVALATGGMELGAMT MF+GFR RE++L++FE ITGLRMNSAYIR Sbjct 129 VIRVMMMELNRISSHLVALATGGMELGAMTAMFLGFRERELILSVFETITGLRMNSAYIR 188 Query 190 PGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGI 249 PGGVA DLP +I E L L LR+M LLNEN IWKART GVGYLDLTGCMALGI Sbjct 189 PGGVAADLPEEGLPQIRELLTLLPTRLRDMENLLNENYIWKARTLGVGYLDLTGCMALGI 248 Query 250 TGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCL 309 TGP+LRSTGLPHDLRKS+PYCGYQ Y+FDVITDD CD+YGRY+IRVKEM ES++IVEQC+ Sbjct 249 TGPVLRSTGLPHDLRKSQPYCGYQTYDFDVITDDRCDSYGRYLIRVKEMRESIRIVEQCV 308 Query 310 DKLRPG---PTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGI 366 ++L P MI+DRKLAWPADL+VGPDGLGNSP+HIAKIMG SME LIHHFKLVTEGI Sbjct 309 ERLERSTGEPVMITDRKLAWPADLKVGPDGLGNSPEHIAKIMGHSMEGLIHHFKLVTEGI 368 Query 367 RVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIA 426 RVP GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVAD I Sbjct 369 RVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADAIT 428 Query 427 AVASIDPVMGGVDR 440 AVASIDPVMGGVDR Sbjct 429 AVASIDPVMGGVDR 442 >gi|145225063|ref|YP_001135741.1| NADH dehydrogenase subunit D [Mycobacterium gilvum PYR-GCK] gi|218534423|sp|A4TDA8.1|NUOD_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|145217549|gb|ABP46953.1| NADH dehydrogenase subunit D [Mycobacterium gilvum PYR-GCK] Length=451 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/443 (81%), Positives = 387/443 (88%), Gaps = 15/443 (3%) Query 13 ETVLVAGGQDWQQVVDAAR------------SADPGERIVVNMGPQHPSTHGVLRLILEI 60 E V+V GGQDW QVV AAR + GERIVVNMGPQHPSTHGVLRLILEI Sbjct 9 ERVIVVGGQDWDQVVTAARQMSNSSSRAGDAAEHAGERIVVNMGPQHPSTHGVLRLILEI 68 Query 61 EGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGI 120 EGET+VEARCGIGYLHTGIEKNLE+R WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLG+ Sbjct 69 EGETIVEARCGIGYLHTGIEKNLEFRTWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGV 128 Query 121 TDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITG 180 TD+IPER +VIRV+MMELNRISSHLVALATGGMELGAMT MF+GFR RE++L++FE ITG Sbjct 129 TDDIPERASVIRVMMMELNRISSHLVALATGGMELGAMTAMFLGFRERELILSVFETITG 188 Query 181 LRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLD 240 LRMNSAYIRPGGVA DLP +I E L L LR+M LLNEN IWKART GVGYLD Sbjct 189 LRMNSAYIRPGGVAADLPEEGLPQIRELLTLLPTRLRDMENLLNENYIWKARTLGVGYLD 248 Query 241 LTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWE 300 LTGCMALGITGP+LRSTGLPHDLRKS+PYCGYQ Y+FDVITDD CD+YGRY+IRVKEM E Sbjct 249 LTGCMALGITGPVLRSTGLPHDLRKSQPYCGYQTYDFDVITDDRCDSYGRYLIRVKEMRE 308 Query 301 SMKIVEQCLDKLRPG---PTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIH 357 S++IVEQC+++L P MI+DRKLAWPADL+VGPDGLGNSP+HIAKIMG SME LIH Sbjct 309 SLRIVEQCVERLERSTGEPVMITDRKLAWPADLKVGPDGLGNSPEHIAKIMGHSMEGLIH 368 Query 358 HFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCE 417 HFKLVTEGIRVP GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCE Sbjct 369 HFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCE 428 Query 418 GGMVADLIAAVASIDPVMGGVDR 440 GGMVAD I AVASIDPVMGGVDR Sbjct 429 GGMVADAITAVASIDPVMGGVDR 451 >gi|229490893|ref|ZP_04384728.1| NADH dehydrogenase, d subunit [Rhodococcus erythropolis SK121] gi|229322283|gb|EEN88069.1| NADH dehydrogenase, d subunit [Rhodococcus erythropolis SK121] Length=443 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/436 (79%), Positives = 386/436 (89%), Gaps = 2/436 (0%) Query 7 SAGGAGETVLVAGGQDWQQVVDAARSADPGE--RIVVNMGPQHPSTHGVLRLILEIEGET 64 ++G ETV+ A GQDW +V AA GE RIVVNMGPQHPSTHGVLRLILEIEGET Sbjct 8 NSGATTETVVTASGQDWDDIVTAAARQRTGEAERIVVNMGPQHPSTHGVLRLILEIEGET 67 Query 65 VVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEI 124 VVEARCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLL ITD+I Sbjct 68 VVEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLDITDDI 127 Query 125 PERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMN 184 PER VIRV+MMELNRISSHLVALATGGMELGA+T M GFR RE++L +FE ITGLRMN Sbjct 128 PERATVIRVMMMELNRISSHLVALATGGMELGAVTAMLFGFRERELILDVFETITGLRMN 187 Query 185 SAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGC 244 AYIRPGG+AQDLP + ++ E LK L + LR++ +L++N+IWKARTQG+GYLDLTGC Sbjct 188 HAYIRPGGLAQDLPDGSVAKVRELLKVLPKRLRDVELMLSDNSIWKARTQGIGYLDLTGC 247 Query 245 MALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKI 304 MALG+TGP+LR+TGLPHD R+++PYCGY++YEFDV+T D D YGRY+IRV+EM ES+KI Sbjct 248 MALGVTGPVLRATGLPHDQRRAQPYCGYENYEFDVVTHDGSDCYGRYVIRVEEMKESLKI 307 Query 305 VEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTE 364 VEQCLDKL+PGP M+ D+K+AWPADL VGPDGLGNS KHIAKIM SSME LIHHFKLVTE Sbjct 308 VEQCLDKLQPGPVMVDDKKIAWPADLAVGPDGLGNSQKHIAKIMESSMEGLIHHFKLVTE 367 Query 365 GIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADL 424 GIRVP GQVYVAVESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQ+VAAMCEGGMV+D+ Sbjct 368 GIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDV 427 Query 425 IAAVASIDPVMGGVDR 440 IA+VASIDPVMGGVDR Sbjct 428 IASVASIDPVMGGVDR 443 >gi|226306211|ref|YP_002766171.1| NADH-quinone oxidoreductase chain D [Rhodococcus erythropolis PR4] gi|226185328|dbj|BAH33432.1| NADH-quinone oxidoreductase chain D [Rhodococcus erythropolis PR4] Length=443 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/436 (79%), Positives = 386/436 (89%), Gaps = 2/436 (0%) Query 7 SAGGAGETVLVAGGQDWQQVVDAARSADPGE--RIVVNMGPQHPSTHGVLRLILEIEGET 64 ++G ETV+ A GQDW +V AA GE RIVVNMGPQHPSTHGVLRLILEIEGET Sbjct 8 NSGATTETVVTASGQDWDDIVTAAARQRTGEAERIVVNMGPQHPSTHGVLRLILEIEGET 67 Query 65 VVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEI 124 VVEARCGIGYLHTGIEKNLE+R WTQGVTFVTRMDYLSPFFNETAYCLGVEKLL ITD+I Sbjct 68 VVEARCGIGYLHTGIEKNLEFRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLDITDDI 127 Query 125 PERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMN 184 PER VIRV+MMELNRISSHLVALATGGMELGA+T M GFR RE++L +FE ITGLRMN Sbjct 128 PERATVIRVMMMELNRISSHLVALATGGMELGAVTAMLFGFRERELILDVFETITGLRMN 187 Query 185 SAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGC 244 AYIRPGG+AQDLP + ++ E LK L + LR++ +L++N+IWKARTQG+GYLDLTGC Sbjct 188 HAYIRPGGLAQDLPDGSVAKVRELLKVLPKRLRDVELMLSDNSIWKARTQGIGYLDLTGC 247 Query 245 MALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKI 304 MALG+TGP+LR+TGLPHD R+++PYCGY++YEFDV+T D D YGRY+IRV+EM ES+KI Sbjct 248 MALGVTGPVLRATGLPHDQRRAQPYCGYENYEFDVVTHDGSDCYGRYVIRVEEMKESLKI 307 Query 305 VEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTE 364 VEQCLDKL+PGP M+ D+K+AWPADL VGPDGLGNS KHIAKIM SSME LIHHFKLVTE Sbjct 308 VEQCLDKLQPGPVMVDDKKIAWPADLAVGPDGLGNSQKHIAKIMESSMEGLIHHFKLVTE 367 Query 365 GIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADL 424 GIRVP GQVYVAVESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQ+VAAMCEGGMV+D+ Sbjct 368 GIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDV 427 Query 425 IAAVASIDPVMGGVDR 440 IA+VASIDPVMGGVDR Sbjct 428 IASVASIDPVMGGVDR 443 >gi|333922081|ref|YP_004495662.1| NADH-quinone oxidoreductase subunit D [Amycolicicoccus subflavus DQS3-9A1] gi|333484302|gb|AEF42862.1| NADH-quinone oxidoreductase subunit D [Amycolicicoccus subflavus DQS3-9A1] Length=434 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/429 (80%), Positives = 380/429 (89%), Gaps = 1/429 (0%) Query 12 GETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCG 71 GE+V GQDW+ + +AA+ AD ERIVVNMGPQHPSTHGVLRLILEIEGETV EARCG Sbjct 7 GESVFTVSGQDWESISEAAKGAD-DERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCG 65 Query 72 IGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVI 131 IGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVE+LL IT++IPER +VI Sbjct 66 IGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVERLLDITEQIPERASVI 125 Query 132 RVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPG 191 RVL+MELNRISSHLVALATG +ELGA TPM GFR RE VL +FE +TGLRMN AYIRPG Sbjct 126 RVLLMELNRISSHLVALATGALELGASTPMLFGFREREQVLDVFEAVTGLRMNHAYIRPG 185 Query 192 GVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITG 251 G+AQD+ ++ + L + + LREM +L+EN IWKART+ VGYLDLTGCMALGITG Sbjct 186 GLAQDISEEGIGKVRDLLALMPKRLREMELILSENPIWKARTKDVGYLDLTGCMALGITG 245 Query 252 PILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDK 311 PILRSTGLPHDLRKS+PYCGY++YEFDVITD CD YGRY+IRVKEM ES+KIVEQCLD+ Sbjct 246 PILRSTGLPHDLRKSQPYCGYENYEFDVITDTGCDCYGRYLIRVKEMRESLKIVEQCLDR 305 Query 312 LRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAG 371 LRPGP M+ DRK+AWPA L++GPDGLGNS +HI KIM +SMEALIHHFKLVTEG RVPAG Sbjct 306 LRPGPVMVEDRKIAWPAQLKLGPDGLGNSLEHIRKIMDTSMEALIHHFKLVTEGFRVPAG 365 Query 372 QVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASI 431 QVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVAD+IAAVASI Sbjct 366 QVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVIAAVASI 425 Query 432 DPVMGGVDR 440 DPVMGGVDR Sbjct 426 DPVMGGVDR 434 >gi|226365383|ref|YP_002783166.1| NADH dehydrogenase subunit D [Rhodococcus opacus B4] gi|226243873|dbj|BAH54221.1| NADH-quinone oxidoreductase chain D [Rhodococcus opacus B4] Length=438 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/435 (79%), Positives = 381/435 (88%), Gaps = 7/435 (1%) Query 13 ETVLVAGGQDWQQVVDAARSA--DPG-----ERIVVNMGPQHPSTHGVLRLILEIEGETV 65 +TV GQDW +VVDA ++A D G ERIVVNMGPQHPSTHGVLRLILEIEGETV Sbjct 4 DTVFTVAGQDWDEVVDAVKAASDDAGSASGEERIVVNMGPQHPSTHGVLRLILEIEGETV 63 Query 66 VEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIP 125 EARCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLL IT+++P Sbjct 64 TEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLDITEQVP 123 Query 126 ERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNS 185 +R +VIRV++MELNRISSHLVALATGGMELGA+T M GFR RE+VL +FE ITGLRMN Sbjct 124 DRASVIRVMLMELNRISSHLVALATGGMELGAVTAMLFGFRERELVLDVFEFITGLRMNH 183 Query 186 AYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCM 245 AYIRPGG++QDLP A ++ E L L + LR+M LLNEN IWK RT+G+GYLDLTGCM Sbjct 184 AYIRPGGLSQDLPEGAVAKVRELLTVLPERLRDMENLLNENRIWKGRTEGIGYLDLTGCM 243 Query 246 ALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIV 305 ALGITGP+LR+TGLPHDLRKS+PYCGY++YEF+V TD CDAYGRY+IRV EM ES+KIV Sbjct 244 ALGITGPMLRATGLPHDLRKSQPYCGYENYEFEVSTDTGCDAYGRYLIRVDEMKESLKIV 303 Query 306 EQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEG 365 EQCLDKLRPGP M D+K+AWPADL +GPDGLGNSP H+ +IM SSME+LIHHFKLVTEG Sbjct 304 EQCLDKLRPGPIMAEDKKIAWPADLTLGPDGLGNSPGHVREIMDSSMESLIHHFKLVTEG 363 Query 366 IRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLI 425 RVP GQVYVAVESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQSVAA CEGGMVAD+I Sbjct 364 FRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQSVAATCEGGMVADVI 423 Query 426 AAVASIDPVMGGVDR 440 AAVASIDPVMGGVDR Sbjct 424 AAVASIDPVMGGVDR 438 >gi|111022875|ref|YP_705847.1| NADH dehydrogenase subunit D [Rhodococcus jostii RHA1] gi|123045607|sp|Q0S447.1|NUOD_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|110822405|gb|ABG97689.1| probable NADH dehydrogenase subunit D [Rhodococcus jostii RHA1] Length=438 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/435 (79%), Positives = 378/435 (87%), Gaps = 7/435 (1%) Query 13 ETVLVAGGQDWQQVVDAARSADPGE-------RIVVNMGPQHPSTHGVLRLILEIEGETV 65 +TV GQDW VVDA +++ G RIVVNMGPQHPSTHGVLRLILEIEGETV Sbjct 4 DTVFTVAGQDWDDVVDAVKASSGGGGSEGGEERIVVNMGPQHPSTHGVLRLILEIEGETV 63 Query 66 VEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIP 125 EARCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLL ITDE+P Sbjct 64 TEARCGIGYLHTGIEKNLEYRTWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLDITDEVP 123 Query 126 ERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNS 185 ER +VIRV++MELNRISSHLVALATGGMELGA+T M GFR RE+VL +FE ITGLRMN Sbjct 124 ERASVIRVMLMELNRISSHLVALATGGMELGAVTAMLFGFRERELVLDVFEMITGLRMNH 183 Query 186 AYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCM 245 AYIRPGG++QDLP A ++ E L + + LR+M LLN+N IWK RTQG+GYLDLTGCM Sbjct 184 AYIRPGGLSQDLPEGAVEKVRELLALMPERLRDMENLLNDNRIWKGRTQGIGYLDLTGCM 243 Query 246 ALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIV 305 ALGITGP+LR+TGLPHDLRKS+PYCGY++YEFDV TD CDAYGRY+IRV EM ES+KIV Sbjct 244 ALGITGPMLRATGLPHDLRKSQPYCGYENYEFDVSTDTGCDAYGRYLIRVDEMKESLKIV 303 Query 306 EQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEG 365 EQCLDKLRPGP M D+K+AWPADL +GPDGLGNSP H+ +IM SSME+LIHHFKLVTEG Sbjct 304 EQCLDKLRPGPIMAEDKKIAWPADLTLGPDGLGNSPGHVREIMDSSMESLIHHFKLVTEG 363 Query 366 IRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLI 425 RVP GQVYVAVESPRGELGVHMVSDGGTRP+RVH+RDPSFTNLQSVAA CEGGMVAD+I Sbjct 364 FRVPPGQVYVAVESPRGELGVHMVSDGGTRPFRVHFRDPSFTNLQSVAATCEGGMVADVI 423 Query 426 AAVASIDPVMGGVDR 440 AAVASIDPVMGGVDR Sbjct 424 AAVASIDPVMGGVDR 438 >gi|54024633|ref|YP_118875.1| NADH dehydrogenase subunit D [Nocardia farcinica IFM 10152] gi|81680060|sp|Q5YWD0.1|NUOD_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|54016141|dbj|BAD57511.1| putative NADH dehydrogenase I chain D [Nocardia farcinica IFM 10152] Length=453 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/430 (79%), Positives = 377/430 (88%), Gaps = 1/430 (0%) Query 11 AGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARC 70 G+TV+ GQDW V + A ERIVVNMGPQHPSTHGVLRLILEIEGETVVEARC Sbjct 25 TGDTVVTVSGQDWDTVTETLGGARE-ERIVVNMGPQHPSTHGVLRLILEIEGETVVEARC 83 Query 71 GIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNV 130 GIGYLHTGIEKNLEYR W QGVTFVTRMDYLSPF+NETAYCLGVE+LLGIT++IPER ++ Sbjct 84 GIGYLHTGIEKNLEYRTWMQGVTFVTRMDYLSPFYNETAYCLGVERLLGITEQIPERASI 143 Query 131 IRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRP 190 +RVL+MELNRISSHLV LATGGMELGA+TPM GFR RE++L +FE ITGLRMN AYIRP Sbjct 144 VRVLLMELNRISSHLVCLATGGMELGALTPMLFGFRERELILDVFETITGLRMNHAYIRP 203 Query 191 GGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGIT 250 GG+AQDLP + ++ E L + + LR+M LL +N I+KARTQ +GYLDLTGCMALGIT Sbjct 204 GGLAQDLPDDGVAKVRELLDLMPKRLRDMEHLLTQNPIFKARTQDIGYLDLTGCMALGIT 263 Query 251 GPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLD 310 GP+LRS GLPHDLRKS+PYCGY+ YEFDV T CD YGRY+IRV+EM ES+KIVEQCLD Sbjct 264 GPVLRSAGLPHDLRKSQPYCGYETYEFDVPTTTGCDCYGRYLIRVEEMKESLKIVEQCLD 323 Query 311 KLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPA 370 +LRPGP MI D+KLAWPADL++G DGLGNSP HI +IMGSSME LIHHFKLVTEGIRVPA Sbjct 324 RLRPGPVMIEDKKLAWPADLKLGADGLGNSPAHIGRIMGSSMEGLIHHFKLVTEGIRVPA 383 Query 371 GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVAS 430 GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVAD+IAAVAS Sbjct 384 GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVIAAVAS 443 Query 431 IDPVMGGVDR 440 IDPVMGGVDR Sbjct 444 IDPVMGGVDR 453 >gi|325673382|ref|ZP_08153073.1| NADH-quinone oxidoreductase subunit D [Rhodococcus equi ATCC 33707] gi|325555403|gb|EGD25074.1| NADH-quinone oxidoreductase subunit D [Rhodococcus equi ATCC 33707] Length=444 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/431 (78%), Positives = 378/431 (88%), Gaps = 2/431 (0%) Query 12 GETVLVAGGQDWQQVVDAARSADPG--ERIVVNMGPQHPSTHGVLRLILEIEGETVVEAR 69 G+ V GGQDW ++VDAA A ERIVVNMGPQHPSTHGVLRLILEIEGETV EAR Sbjct 14 GDAVFTVGGQDWDELVDAASDAHQAGAERIVVNMGPQHPSTHGVLRLILEIEGETVTEAR 73 Query 70 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 129 CGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNE AYCLGVEKLL ITD IPER Sbjct 74 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNEVAYCLGVEKLLDITDRIPERAT 133 Query 130 VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIR 189 V+RVL+MELNRISSHLVALATGGMELGA+TPM GFR RE+VL +FE ITGLRMN AYIR Sbjct 134 VVRVLLMELNRISSHLVALATGGMELGAITPMLFGFRERELVLDIFEMITGLRMNHAYIR 193 Query 190 PGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGI 249 PGG+AQDLP A ++ E L + + LR++ +LLNEN IWKART+G+GYLDLTGCMALG+ Sbjct 194 PGGLAQDLPDGAVAKVRELLDLMPRRLRDLEDLLNENPIWKARTRGIGYLDLTGCMALGV 253 Query 250 TGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCL 309 TGP+LR+TGLP D+R+S+PYCGY+ YEFDV+TD D YGRY++RV+EM ES+KIVEQCL Sbjct 254 TGPVLRATGLPLDVRRSDPYCGYETYEFDVVTDTGSDCYGRYLVRVQEMAESLKIVEQCL 313 Query 310 DKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVP 369 D+LRPGP M++D+K+AWPADL VG DGLGNS +HI +IMG+SME LIHHFKLVTEG RVP Sbjct 314 DRLRPGPVMVADKKIAWPADLAVGADGLGNSLEHIRRIMGTSMEELIHHFKLVTEGFRVP 373 Query 370 AGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVA 429 GQVYV VESPRGELGVHMVSDGGTRP+RVHYRDPSFTNLQ+VAAMCEGGMVAD+IA+VA Sbjct 374 PGQVYVPVESPRGELGVHMVSDGGTRPFRVHYRDPSFTNLQAVAAMCEGGMVADVIASVA 433 Query 430 SIDPVMGGVDR 440 SIDPVMGGVDR Sbjct 434 SIDPVMGGVDR 444 >gi|312139312|ref|YP_004006648.1| NADH dehydrogenase (quinone) chain d nuod [Rhodococcus equi 103S] gi|311888651|emb|CBH47963.1| NADH dehydrogenase (quinone) chain D NuoD [Rhodococcus equi 103S] Length=444 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/431 (78%), Positives = 378/431 (88%), Gaps = 2/431 (0%) Query 12 GETVLVAGGQDWQQVVDAARSADPG--ERIVVNMGPQHPSTHGVLRLILEIEGETVVEAR 69 G+ V GGQDW ++VDAA A ERIVVNMGPQHPSTHGVLRLILEIEGETV EAR Sbjct 14 GDAVFTVGGQDWDELVDAASEAHQAGAERIVVNMGPQHPSTHGVLRLILEIEGETVTEAR 73 Query 70 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 129 CGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNE AYCLGVEKLL ITD IPER Sbjct 74 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNEVAYCLGVEKLLDITDRIPERAT 133 Query 130 VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIR 189 V+RVL+MELNRISSHLVALATGGMELGA+TPM GFR RE+VL +FE ITGLRMN AYIR Sbjct 134 VVRVLLMELNRISSHLVALATGGMELGAITPMLFGFRERELVLDIFEMITGLRMNHAYIR 193 Query 190 PGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGI 249 PGG+AQDLP A ++ E L + + LR++ +LLNEN IWKART+G+GYLDLTGCMALG+ Sbjct 194 PGGLAQDLPDGAVAKVRELLDLMPRRLRDLEDLLNENPIWKARTRGIGYLDLTGCMALGV 253 Query 250 TGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCL 309 TGP+LR+TGLP D+R+S+PYCGY+ YEFDV+TD D YGRY++RV+EM ES+KIVEQCL Sbjct 254 TGPVLRATGLPLDVRRSDPYCGYETYEFDVVTDTGSDCYGRYLVRVQEMAESLKIVEQCL 313 Query 310 DKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVP 369 D+LRPGP M++D+K+AWPADL VG DGLGNS +HI +IMG+SME LIHHFKLVTEG RVP Sbjct 314 DRLRPGPVMVADKKIAWPADLAVGADGLGNSLEHIRRIMGTSMEELIHHFKLVTEGFRVP 373 Query 370 AGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVA 429 GQVYV VESPRGELGVHMVSDGGTRP+RVHYRDPSFTNLQ+VAAMCEGGMVAD+IA+VA Sbjct 374 PGQVYVPVESPRGELGVHMVSDGGTRPFRVHYRDPSFTNLQAVAAMCEGGMVADVIASVA 433 Query 430 SIDPVMGGVDR 440 SIDPVMGGVDR Sbjct 434 SIDPVMGGVDR 444 >gi|118473895|ref|YP_886421.1| NADH dehydrogenase subunit D [Mycobacterium smegmatis str. MC2 155] gi|218534425|sp|A0QU33.1|NUOD_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gi|118175182|gb|ABK76078.1| NADH-quinone oxidoreducatase, D subunit [Mycobacterium smegmatis str. MC2 155] Length=442 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/402 (84%), Positives = 370/402 (93%), Gaps = 0/402 (0%) Query 39 IVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRM 98 IVVNMGPQHPSTHGVLRLILEIEGE + EARCGIGYLHTGIEKNLEYR WTQGVTFVTRM Sbjct 41 IVVNMGPQHPSTHGVLRLILEIEGEIITEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 Query 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158 DYLSPFFNETAYCLGVEKLLGITD+IPER +VIRV++MELNRISSHLVALATGGMELGAM Sbjct 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 Query 159 TPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLRE 218 + MF GFR RE +L +FE ITGLRMN AYIRPGG+A DLP +A T++ ++ L + L++ Sbjct 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 Query 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFD 278 + +LLNEN IWKART GVGYLDLTGCMALGITGPILRSTGLPHDLRK++PYCGY++YEFD Sbjct 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 Query 279 VITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLG 338 VITDD CD+YGRY+IRVKEM ES+KIVEQCL +L+PGP MISD+KLAWPADL++GPDGLG Sbjct 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 Query 339 NSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYR 398 NSP+HIAKIMG SME LIHHFKLVTEGIRVP GQVYVAVESPRGELGVHMVSDGGTRPYR Sbjct 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 Query 399 VHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440 VHYRDPSFTNLQ+VAA CEGGMVAD IAAVASIDPVMGGVDR Sbjct 401 VHYRDPSFTNLQAVAATCEGGMVADAIAAVASIDPVMGGVDR 442 >gi|343926372|ref|ZP_08765877.1| NADH-quinone oxidoreductase subunit D [Gordonia alkanivorans NBRC 16433] gi|343763610|dbj|GAA12803.1| NADH-quinone oxidoreductase subunit D [Gordonia alkanivorans NBRC 16433] Length=398 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/398 (84%), Positives = 369/398 (93%), Gaps = 0/398 (0%) Query 43 MGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLS 102 MGPQHPSTHGVLRLILEIEGETV EARCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLS Sbjct 1 MGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLS 60 Query 103 PFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMF 162 PFFNETAYCLGVEKLLGITD++PER VIRV++MELNRISSHLVALATGGMELGA+T MF Sbjct 61 PFFNETAYCLGVEKLLGITDDVPERATVIRVMLMELNRISSHLVALATGGMELGAVTAMF 120 Query 163 VGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGEL 222 +GFR RE++L LFE ITGLRMN AYIRPGGVAQDLPP+ ++AE + QL L E+G+L Sbjct 121 LGFRERELILDLFELITGLRMNHAYIRPGGVAQDLPPDGPEQVAEVVAQLPGRLDELGDL 180 Query 223 LNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITD 282 L +N IWKARTQ VGYLDLTGCMALGITGP+LRSTG PHDLRK++PYCGY+ Y+FDVIT Sbjct 181 LTDNYIWKARTQSVGYLDLTGCMALGITGPVLRSTGYPHDLRKTQPYCGYETYDFDVITT 240 Query 283 DSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPK 342 D+CD+YGRY+IRVKEM ES++IVEQCL++LRPGP M++DRKLAWPADL +GPDGLGNSP+ Sbjct 241 DTCDSYGRYLIRVKEMRESIRIVEQCLERLRPGPVMVADRKLAWPADLALGPDGLGNSPE 300 Query 343 HIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYR 402 HIA+IMG+SMEALIHHFKLVTEG+RVPAGQ YVAVESPRGELGVH+VSDGGTRPYRVH+R Sbjct 301 HIARIMGTSMEALIHHFKLVTEGMRVPAGQCYVAVESPRGELGVHLVSDGGTRPYRVHFR 360 Query 403 DPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440 DPSFTNLQ+VAAMCEGGMVAD+I AVASIDPVMGGVDR Sbjct 361 DPSFTNLQAVAAMCEGGMVADVITAVASIDPVMGGVDR 398 >gi|326382760|ref|ZP_08204450.1| NADH dehydrogenase subunit D [Gordonia neofelifaecis NRRL B-59395] gi|326198350|gb|EGD55534.1| NADH dehydrogenase subunit D [Gordonia neofelifaecis NRRL B-59395] Length=436 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/431 (77%), Positives = 377/431 (88%), Gaps = 4/431 (0%) Query 14 TVLVAGGQDWQQVVDAAR---SADPG-ERIVVNMGPQHPSTHGVLRLILEIEGETVVEAR 69 + G+DW+ VV A R +A P ERI+VNMGPQHPSTHGVLRLILEI+GETV EAR Sbjct 6 STFTVTGRDWEDVVTAVRERAAAGPDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEAR 65 Query 70 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 129 CGIGYLHTGIEKNLE+R WTQGV FVTRMDYL+PFFNE AYCL VEKLLGITDEIP R + Sbjct 66 CGIGYLHTGIEKNLEFRTWTQGVAFVTRMDYLAPFFNEVAYCLAVEKLLGITDEIPARAS 125 Query 130 VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIR 189 VIRVL+MELNRI+SHLVALATGGMELGA+TPMF+GF ARE +L LFE ITGLRMN A+IR Sbjct 126 VIRVLLMELNRIASHLVALATGGMELGAVTPMFLGFGAREKILDLFEDITGLRMNHAFIR 185 Query 190 PGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGI 249 PGG++QDLP A +IA+ L L + E+ LL EN IWKART+G+GYLDLTGCMALG+ Sbjct 186 PGGISQDLPDGAERKIADVLDALPGQIGEVESLLTENYIWKARTRGIGYLDLTGCMALGV 245 Query 250 TGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCL 309 TGP+LRSTGLP+DLRKS+PYCGY++Y+FDV+TD CDAYGRY+IRV+EM +S++I QCL Sbjct 246 TGPVLRSTGLPYDLRKSDPYCGYENYDFDVVTDTGCDAYGRYLIRVEEMKQSIRIARQCL 305 Query 310 DKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVP 369 L PGP M++DRKLAWPADL VGPDG+GNSP+HIA+IMG SME+LIHHFKLVTEG+RVP Sbjct 306 AALEPGPVMVADRKLAWPADLAVGPDGMGNSPEHIAEIMGMSMESLIHHFKLVTEGMRVP 365 Query 370 AGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVA 429 AGQ YVA+ESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQ+VAAMCEGG+VAD+I AVA Sbjct 366 AGQCYVAIESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQAVAAMCEGGLVADVITAVA 425 Query 430 SIDPVMGGVDR 440 SIDPVMGGVDR Sbjct 426 SIDPVMGGVDR 436 >gi|333991502|ref|YP_004524116.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone oxidoreductase chain D) [Mycobacterium sp. JDM601] gi|333487470|gb|AEF36862.1| NADH dehydrogenase I (chain D) NuoD (NADH- ubiquinone oxidoreductase chain D) [Mycobacterium sp. JDM601] Length=437 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/430 (77%), Positives = 373/430 (87%), Gaps = 3/430 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TVL GGQ+W QVV+AAR+ADPGERIVVNMGPQHPSTHGVLRLILE++GETV EARCGIG Sbjct 8 TVLNVGGQEWDQVVEAARAADPGERIVVNMGPQHPSTHGVLRLILELDGETVTEARCGIG 67 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLE RYWTQGVTFVTRMDYLSPFFNE AYCLGVEKLL +TDEIP RV+ IRV Sbjct 68 YLHTGIEKNLESRYWTQGVTFVTRMDYLSPFFNEVAYCLGVEKLLDVTDEIPPRVSQIRV 127 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 LMMELNRISSHLVALATGGMELGA++ M GFR RE+VL +FE ITGLRMN YIRPGGV Sbjct 128 LMMELNRISSHLVALATGGMELGALSVMLFGFRERELVLDIFETITGLRMNHQYIRPGGV 187 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 + DLP A +I + LK + + L+++ +LL +N IWKART+GVGYLDLTGCMALGITGP+ Sbjct 188 SVDLPDEAIGQIRDFLKLMPKRLKDIEDLLTDNYIWKARTKGVGYLDLTGCMALGITGPV 247 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLP+D+R+ EPYCGYQ YEFDVITDD CDAYGRY+IR+ E+ ES+KIVEQC++KL Sbjct 248 LRSTGLPYDVRREEPYCGYQDYEFDVITDDGCDAYGRYLIRIAEIKESLKIVEQCVEKLV 307 Query 314 PG---PTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPA 370 P MI DRK+AWP DL +GPDG GNS +HI IMG SME LIHHFK VTE + VP Sbjct 308 KSHGDPVMIEDRKIAWPGDLTIGPDGQGNSREHIGWIMGHSMEGLIHHFKRVTEDLWVPP 367 Query 371 GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVAS 430 GQV+V+VESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAM EG ++AD+IAAVAS Sbjct 368 GQVFVSVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMSEGALIADVIAAVAS 427 Query 431 IDPVMGGVDR 440 IDPVMGGVDR Sbjct 428 IDPVMGGVDR 437 >gi|319950454|ref|ZP_08024368.1| NADH dehydrogenase subunit D [Dietzia cinnamea P4] gi|319435877|gb|EFV91083.1| NADH dehydrogenase subunit D [Dietzia cinnamea P4] Length=441 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/428 (76%), Positives = 368/428 (86%), Gaps = 1/428 (0%) Query 13 ETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGI 72 +T+L A G+DW + +AAR+AD +RIVVNMGPQHPSTHGVLRLILEIEGETV A CGI Sbjct 15 DTILTASGRDWDAISEAARNAD-DDRIVVNMGPQHPSTHGVLRLILEIEGETVTRASCGI 73 Query 73 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIR 132 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNE A+CLGVEKLLGI+ ++PER +VIR Sbjct 74 GYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNEVAFCLGVEKLLGISAQVPERASVIR 133 Query 133 VLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGG 192 V++MELNRI+SH+VALATG +ELGA TPM GFR RE+VL +FE ITGLRMN AYIRPGG Sbjct 134 VMLMELNRIASHMVALATGALELGASTPMLFGFRERELVLDVFEVITGLRMNHAYIRPGG 193 Query 193 VAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGP 252 V QDLP A ++ E L+ + +REM LL EN IW+ R Q VGYLDLTGCMALG+TGP Sbjct 194 VVQDLPDEAVPKVRELLEVMPGRIREMELLLRENPIWRMRLQDVGYLDLTGCMALGVTGP 253 Query 253 ILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKL 312 +LR+TGLPHD+R+S+PYCGY+ YEFDV+T + D Y R+++RV EM ES+KIVEQCLD+L Sbjct 254 VLRATGLPHDVRRSDPYCGYETYEFDVVTGSASDCYDRFVVRVDEMKESLKIVEQCLDRL 313 Query 313 RPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQ 372 PGP M+ D K+AWPA L+VGPDGLGNS +HI IM SSMEALIHHFKLVTEG VP GQ Sbjct 314 APGPVMVDDPKIAWPAQLKVGPDGLGNSAEHIRHIMDSSMEALIHHFKLVTEGFPVPPGQ 373 Query 373 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASID 432 VYV VESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAAMCEGGMVAD+IAAVASID Sbjct 374 VYVPVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADVIAAVASID 433 Query 433 PVMGGVDR 440 PVMGGVDR Sbjct 434 PVMGGVDR 441 >gi|297159511|gb|ADI09223.1| NADH dehydrogenase subunit D [Streptomyces bingchenggensis BCW-1] Length=444 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/427 (75%), Positives = 367/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV AA AD ERI+VNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 19 TVYTVTGGDWDEVVAAASRAD-DERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 77 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLE+R WTQG TFVTRMDYL+PF+NE AYCLGVEKLLGI D++P+R +VIRV Sbjct 78 YLHTGIEKNLEFRNWTQGTTFVTRMDYLTPFYNEAAYCLGVEKLLGIEDQVPDRASVIRV 137 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 ++MELNR+SSHLVA+ATGGMELGA T M GFR RE++L +FE ITGLRMN AYIRPGG+ Sbjct 138 MLMELNRLSSHLVAIATGGMELGATTIMIYGFRDREMILDIFELITGLRMNHAYIRPGGL 197 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A ++ +K++R+ L E +L N I+KAR Q VGYLDL GCMALGITGPI Sbjct 198 AQDLPPGAVDQVRAFVKKMRKNLPEYDKLATGNPIFKARLQDVGYLDLAGCMALGITGPI 257 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LR+TGLPHDLRK++PYCGY+ Y+FDV T D+CDAYGR++IR++EM +S++IVEQCLD+L Sbjct 258 LRATGLPHDLRKAQPYCGYETYDFDVPTADTCDAYGRFLIRLEEMRQSLRIVEQCLDRLA 317 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M+ D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVP GQ Sbjct 318 PGPVMVEDKKIAWPAQLSLGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQT 377 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVHMVSDGGTRP+RVH+RDPSFTNLQSVAAMCEGG VAD+I AVASIDP Sbjct 378 YTAVESPKGELGVHMVSDGGTRPFRVHFRDPSFTNLQSVAAMCEGGQVADVIVAVASIDP 437 Query 434 VMGGVDR 440 VMGGVDR Sbjct 438 VMGGVDR 444 >gi|302553429|ref|ZP_07305771.1| NADH dehydrogenase (quinone), D subunit [Streptomyces viridochromogenes DSM 40736] gi|302471047|gb|EFL34140.1| NADH dehydrogenase (quinone), D subunit [Streptomyces viridochromogenes DSM 40736] Length=440 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/427 (75%), Positives = 370/427 (87%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV++A AD ERIVVNMGPQHPSTHGVLRLILEIEGETV EARCGIG Sbjct 15 TVYTVTGGDWDEVVESAARAD-DERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIG 73 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNETAYCLGVEKLLGI D+IP+R ++IRV Sbjct 74 YLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNETAYCLGVEKLLGIEDQIPDRASIIRV 133 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE++L ++E ITGLRMN AYIRPGG+ Sbjct 134 LLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGL 193 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++++ L E +L N I+KAR Q VGYLDL GCMALG TGPI Sbjct 194 AQDLPPGAVDQIREFVKKMKKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPI 253 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLPHDLRK++PYCGY+ Y+F++ T D+CD+YGR++IR++EM +S++IVEQCLD+L+ Sbjct 254 LRSTGLPHDLRKTQPYCGYETYDFEIPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQ 313 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVP GQ Sbjct 314 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQT 373 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 374 YAAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 433 Query 434 VMGGVDR 440 VMGGVDR Sbjct 434 VMGGVDR 440 >gi|302536171|ref|ZP_07288513.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. C] gi|302445066|gb|EFL16882.1| NADH dehydrogenase (quinone), D subunit [Streptomyces sp. C] Length=441 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/427 (75%), Positives = 367/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW ++V +A AD ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 16 TVYTVTGGDWDEIVQSAAKAD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 74 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLE+R WTQG TFVTRMDYL+PFFNETAYCLGVEKLLGITD+IP+R VIRV Sbjct 75 YLHTGIEKNLEFRNWTQGTTFVTRMDYLTPFFNETAYCLGVEKLLGITDQIPDRATVIRV 134 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE++L +FE ITGLRMN A++RPGG+ Sbjct 135 LLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELILDVFELITGLRMNHAFVRPGGL 194 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A ++ E +K +++ L E +L N I+KAR Q VGYLDLTGCMALG TGPI Sbjct 195 AQDLPPGAVDQLREFVKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPI 254 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRS GLPHDLRK++PYCGY+ YEFDV T +SCD+YGR++IR++EM +S++IVEQCLD+L Sbjct 255 LRSAGLPHDLRKTDPYCGYEDYEFDVPTTESCDSYGRFLIRLEEMRQSLRIVEQCLDRLE 314 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI IMG+SMEALIHHFKLVTEG RVPAGQ Sbjct 315 PGPVMVADKKIAWPAQLAMGPDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPAGQA 374 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 375 YAAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 434 Query 434 VMGGVDR 440 VMGGVDR Sbjct 435 VMGGVDR 441 >gi|289769831|ref|ZP_06529209.1| NADH dehydrogenase (quinone), D subunit [Streptomyces lividans TK24] gi|289700030|gb|EFD67459.1| NADH dehydrogenase (quinone), D subunit [Streptomyces lividans TK24] Length=440 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/427 (75%), Positives = 368/427 (87%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV +A AD ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 15 TVYTVTGGDWDEVVQSAARAD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 73 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNE AYCLGVEKLLGI D+IP+R +IRV Sbjct 74 YLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNEAAYCLGVEKLLGIDDQIPDRATIIRV 133 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLVA+ATGGMELGA T M GFR RE++L ++E ITGLRMN AYIRPGG+ Sbjct 134 LLMELNRLSSHLVAIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGL 193 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++ + L E +L N I+KAR Q VGYLDL GCMALG TGP+ Sbjct 194 AQDLPPGAVDQIREFVKKMNKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPV 253 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLPHDLRK++PYCGY+ Y+FDV T D+CD+YGR++IR++EM +S++IVEQCLD+L+ Sbjct 254 LRSTGLPHDLRKTQPYCGYETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQ 313 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVP GQV Sbjct 314 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQV 373 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 374 YTAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 433 Query 434 VMGGVDR 440 VMGGVDR Sbjct 434 VMGGVDR 440 >gi|254382440|ref|ZP_04997799.1| NADH dehydrogenase subunit D [Streptomyces sp. Mg1] gi|194341344|gb|EDX22310.1| NADH dehydrogenase subunit D [Streptomyces sp. Mg1] Length=446 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/427 (75%), Positives = 368/427 (87%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW ++V +A AD ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 21 TVYTVTGGDWDEIVQSAARAD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 79 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLE+R WTQG TFVTRMDYL+PFFNETAYCLGVEKLLGITD+IP+R V+RV Sbjct 80 YLHTGIEKNLEFRNWTQGTTFVTRMDYLTPFFNETAYCLGVEKLLGITDQIPDRATVLRV 139 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE++L +FE ITGLRMN A+IRPGG+ Sbjct 140 LLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELILDIFELITGLRMNHAFIRPGGL 199 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A ++ + +K +++ L E +L N I+KAR Q VGYLDLTGCMALG TGPI Sbjct 200 AQDLPPGAVDQLRDFVKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPI 259 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRS GLPHDLRKS+PYCGY++YEFDV T +SCD+YGR++IR++EM +S++IVEQCL++L Sbjct 260 LRSAGLPHDLRKSDPYCGYENYEFDVPTTESCDSYGRFLIRLEEMRQSLRIVEQCLERLE 319 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI IMG+SMEALIHHFKLVTEG RVPAGQ Sbjct 320 PGPVMVADKKIAWPAQLAMGPDGLGNSLDHIRTIMGTSMEALIHHFKLVTEGFRVPAGQA 379 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 380 YAAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 439 Query 434 VMGGVDR 440 VMGGVDR Sbjct 440 VMGGVDR 446 >gi|21222948|ref|NP_628727.1| NADH dehydrogenase subunit D [Streptomyces coelicolor A3(2)] gi|81789728|sp|Q9XAQ7.1|NUOD2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName: Full=NADH dehydrogenase I subunit D 2; AltName: Full=NDH-1 subunit D 2 gi|5042274|emb|CAB44528.1| NuoD, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] Length=440 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/427 (75%), Positives = 367/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV +A AD ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 15 TVYTVTGGDWDEVVQSAARAD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 73 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNE AYCLGVEKLLGI D+IP+R +IRV Sbjct 74 YLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNEAAYCLGVEKLLGIDDQIPDRATIIRV 133 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLVA+ATGGMELGA T M GFR RE++L ++E ITGLRMN AYIRPGG+ Sbjct 134 LLMELNRLSSHLVAIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGL 193 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++ + L E +L N I+KAR Q VGYLDL GCMALG TGP+ Sbjct 194 AQDLPPGAVDQIREFVKKMNKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPV 253 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLPHDLRK++PYCGY+ Y+FDV T D+CD+YGR++IR++EM +S++IVEQCLD+L+ Sbjct 254 LRSTGLPHDLRKTQPYCGYETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQ 313 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVP QV Sbjct 314 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPAQV 373 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 374 YTAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 433 Query 434 VMGGVDR 440 VMGGVDR Sbjct 434 VMGGVDR 440 >gi|302559104|ref|ZP_07311446.1| NADH dehydrogenase (quinone), D subunit [Streptomyces griseoflavus Tu4000] gi|302476722|gb|EFL39815.1| NADH dehydrogenase (quinone), D subunit [Streptomyces griseoflavus Tu4000] Length=440 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/427 (74%), Positives = 368/427 (87%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV++A AD ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 15 TVYTVTGGDWDEVVESAARAD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 73 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNETAYCL VEKLLGI D++P+R +VIRV Sbjct 74 YLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNETAYCLAVEKLLGIEDQVPDRASVIRV 133 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE++L ++E ITGLRMN AYIRPGG+ Sbjct 134 LLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGL 193 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++R+ + E +L N I+KAR Q VGYLDL GCMALG TGPI Sbjct 194 AQDLPPGAVDQIREFVKKMRKNIGEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPI 253 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLPHDLRK++PYCGY+ Y+F+V T D+CD+YGR++IR++EM +S++IVEQCLD+L+ Sbjct 254 LRSTGLPHDLRKTQPYCGYETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQ 313 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI IMG+SMEALIHHFKLVTEG RVP GQ Sbjct 314 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPPGQA 373 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 374 YAAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 433 Query 434 VMGGVDR 440 VMGGVDR Sbjct 434 VMGGVDR 440 >gi|329935994|ref|ZP_08285794.1| NADH dehydrogenase subunit NuoD [Streptomyces griseoaurantiacus M045] gi|329304472|gb|EGG48350.1| NADH dehydrogenase subunit NuoD [Streptomyces griseoaurantiacus M045] Length=436 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/427 (74%), Positives = 365/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV A +D ERI+VNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 11 TVYTVTGGDWDEVVQTAAKSD-DERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 69 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNE AYCL VEKLLGI D++P+R +IRV Sbjct 70 YLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNEAAYCLAVEKLLGIEDQVPDRATIIRV 129 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLVA+ATGGMELGA T M GFR RE++L ++E ITGLRMN A+IRPGG+ Sbjct 130 LLMELNRLSSHLVAIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAFIRPGGL 189 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++R+ L E +L N I+KAR Q VGYLDL GCMALG TGPI Sbjct 190 AQDLPPGAVDQIREFVKKMRKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPI 249 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLPHDLRKS+PYCGY+ Y+FDV T D+CD+YGR++IR++EM +S++IVEQCLD+L+ Sbjct 250 LRSTGLPHDLRKSQPYCGYETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQ 309 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI IMG+SMEALIHHFKLVTEG RVP GQ Sbjct 310 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKNIMGTSMEALIHHFKLVTEGFRVPPGQA 369 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 YVA+ESP+GELG H+VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 370 YVAIESPKGELGAHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 429 Query 434 VMGGVDR 440 VMGGVDR Sbjct 430 VMGGVDR 436 >gi|29831383|ref|NP_826017.1| NADH dehydrogenase subunit D [Streptomyces avermitilis MA-4680] gi|81718123|sp|Q82DX8.1|NUOD1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName: Full=NADH dehydrogenase I subunit D 1; AltName: Full=NDH-1 subunit D 1 gi|29608498|dbj|BAC72552.1| putative NADH dehydrogenase I chain D (complex I) [Streptomyces avermitilis MA-4680] Length=443 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/427 (75%), Positives = 365/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV +A +D ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 18 TVYTVTGGDWDEVVQSAAKSD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 76 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNETAYCL VEKLLGI +EIP+R ++IRV Sbjct 77 YLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNETAYCLAVEKLLGIENEIPDRASIIRV 136 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE++L ++E ITGLRMN AYIRPGG+ Sbjct 137 LLMELNRMSSHLVCIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGL 196 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++++ L E +L N I+KAR Q VGYLDL GCMALG TGPI Sbjct 197 AQDLPPGAVDQIREFVKKMKKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPI 256 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRS GLPHDLRKS+PYCGY+ Y+FDV T D+CD+YGR++IR++EM +S++IVEQCLD+L Sbjct 257 LRSAGLPHDLRKSQPYCGYETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLA 316 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVP GQ Sbjct 317 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQT 376 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 377 YSAVESPKGELGVHAVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 436 Query 434 VMGGVDR 440 VMGGVDR Sbjct 437 VMGGVDR 443 >gi|297192785|ref|ZP_06910183.1| NADH dehydrogenase subunit D (NuoD) [Streptomyces pristinaespiralis ATCC 25486] gi|197721028|gb|EDY64936.1| NADH dehydrogenase subunit D (NuoD) [Streptomyces pristinaespiralis ATCC 25486] Length=440 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/426 (75%), Positives = 366/426 (86%), Gaps = 1/426 (0%) Query 15 VLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGY 74 V G DW +VV +A AD ERIVVNMGPQHPSTHGVLRLILEI+GETV EARCGIGY Sbjct 16 VYTVTGGDWDEVVRSAAKAD-DERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGY 74 Query 75 LHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVL 134 LHTGIEKNLEYR WTQG TFVTRMDYL+PFFNETAYCLGVE+LLGI D+IP+R VIRVL Sbjct 75 LHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNETAYCLGVERLLGIEDQIPDRATVIRVL 134 Query 135 MMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVA 194 +MELNR+SSHLV +ATGGMELGA T M GFR RE++L ++E ITGLRMN AYIRPGG+A Sbjct 135 LMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLA 194 Query 195 QDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPIL 254 QDLPP A ++ E +K +++ L E +L N I+KAR Q VGYLDLTGCMALG TGPIL Sbjct 195 QDLPPGAVDQLREFVKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPIL 254 Query 255 RSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRP 314 RSTGL HDLRK++PYCGY+ Y+FDV T D+CD+YGR++IR++EM +S++IVEQCLD+L P Sbjct 255 RSTGLAHDLRKTDPYCGYETYDFDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLEP 314 Query 315 GPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVY 374 GP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVPAGQ Y Sbjct 315 GPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAY 374 Query 375 VAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPV 434 AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDPV Sbjct 375 AAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPV 434 Query 435 MGGVDR 440 MGGVDR Sbjct 435 MGGVDR 440 >gi|290958257|ref|YP_003489439.1| NADH dehydrogenase subunit NuoD [Streptomyces scabiei 87.22] gi|260647783|emb|CBG70888.1| NuoD, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length=446 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/443 (73%), Positives = 370/443 (84%), Gaps = 7/443 (1%) Query 3 AIADSAGGAGET----VLVAGGQDWQQVVD-AARSADPGERIVVNMGPQHPSTHGVLRLI 57 A ADS A ET V G DW +V AARS D ERI+VNMGPQHPSTHGVLRLI Sbjct 6 ASADSTASARETTEGTVYTVTGGDWDEVAQTAARSDD--ERIIVNMGPQHPSTHGVLRLI 63 Query 58 LEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKL 117 LEI+GETV EARCGIGYLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNETAYCL VEKL Sbjct 64 LEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNETAYCLAVEKL 123 Query 118 LGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEK 177 LGI DEIP+R +IRVL+MELNR+SSHLV +ATGGMELGA T M GFR RE++L ++E Sbjct 124 LGIEDEIPDRATIIRVLLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELILDIYEL 183 Query 178 ITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVG 237 ITGLRMN AYIRPGG+AQDLPP A +I E +K++ + L E +L N I+KAR Q +G Sbjct 184 ITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMEKNLPEYDKLATGNPIFKARMQDIG 243 Query 238 YLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKE 297 +LDL GCMALG TGPILRS GLPHDLRK++PYCGY+ Y+FDV T D+CD+YGR++IR++E Sbjct 244 HLDLAGCMALGATGPILRSAGLPHDLRKAQPYCGYETYDFDVPTADTCDSYGRFLIRLEE 303 Query 298 MWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIH 357 M +S++IVEQCLD+L+PGP M+ D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIH Sbjct 304 MRQSLRIVEQCLDRLQPGPVMVGDKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIH 363 Query 358 HFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCE 417 HFKLVTEG RVP GQ Y AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCE Sbjct 364 HFKLVTEGFRVPPGQAYAAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCE 423 Query 418 GGMVADLIAAVASIDPVMGGVDR 440 GG VAD+I AVASIDPVMGGVDR Sbjct 424 GGQVADVIVAVASIDPVMGGVDR 446 >gi|294630799|ref|ZP_06709359.1| NADH dehydrogenase, D subunit [Streptomyces sp. e14] gi|292834132|gb|EFF92481.1| NADH dehydrogenase, D subunit [Streptomyces sp. e14] Length=440 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/427 (74%), Positives = 363/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV +A AD ERIVVNMGPQHPSTHGVLRLILEIEGETV EARCGIG Sbjct 15 TVYTVTGGDWDEVVQSAARAD-DERIVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIG 73 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLE+R WTQG TFVTRMDYL+ FFNETAYCL VEKLLGI D+I ER +IRV Sbjct 74 YLHTGIEKNLEFRTWTQGTTFVTRMDYLTSFFNETAYCLAVEKLLGIEDQITERAKIIRV 133 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE++L ++E +TGLRMN AYIRPGG+ Sbjct 134 LLMELNRLSSHLVCIATGGMELGATTIMIYGFRDREMILDIYELVTGLRMNHAYIRPGGL 193 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A +I E +K++R+ L E +L N I+KAR Q VGYLDL GCMALG TGPI Sbjct 194 AQDLPPGAVDQIREFVKKMRKNLPEYDKLATGNPIFKARMQDVGYLDLAGCMALGATGPI 253 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRSTGLPHDLRK++PYC Y+ Y+FDV T D+CDAYGR++IR++EM +S++IVEQCLD+L+ Sbjct 254 LRSTGLPHDLRKTQPYCDYETYDFDVPTADTCDAYGRFLIRLEEMHQSLRIVEQCLDRLQ 313 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKLVTEG RVP GQ Sbjct 314 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQA 373 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 374 YTAVESPKGELGVHAVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 433 Query 434 VMGGVDR 440 VMGGVDR Sbjct 434 VMGGVDR 440 >gi|182436774|ref|YP_001824493.1| NADH dehydrogenase subunit D [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777369|ref|ZP_08236634.1| NAD(P)H-quinone oxidoreductase subunit H [Streptomyces cf. griseus XylebKG-1] gi|218534364|sp|B1W516.1|NUOD1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName: Full=NADH dehydrogenase I subunit D 1; AltName: Full=NDH-1 subunit D 1 gi|178465290|dbj|BAG19810.1| putative NADH dehydrogenase chain D [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657702|gb|EGE42548.1| NAD(P)H-quinone oxidoreductase subunit H [Streptomyces griseus XylebKG-1] Length=440 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/427 (73%), Positives = 365/427 (86%), Gaps = 1/427 (0%) Query 14 TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIG 73 TV G DW +VV++A +D ERI+VNMGPQHPSTHGVLRLILEI+GETV EARCGIG Sbjct 15 TVYTVTGGDWDEVVESAVKSD-DERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIG 73 Query 74 YLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRV 133 YLHTGIEKNLE+R WTQG TFVTRMDYL+PFFNETAYCLGVEKLLGI D+IP+R V+RV Sbjct 74 YLHTGIEKNLEFRNWTQGTTFVTRMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRV 133 Query 134 LMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGV 193 L+MELNR+SSHLV +ATGGMELGA T M GFR RE+VL LFE TGLRMN A++RPGG+ Sbjct 134 LLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGL 193 Query 194 AQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPI 253 AQDLPP A + E +K +++ L E +L N I+KAR Q VGYLDLTGCMALG TGP+ Sbjct 194 AQDLPPGAVDRLREFIKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPV 253 Query 254 LRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLR 313 LRS GLPHDLRKS+PYCGY+ Y+F+V T D+CD+YGR++IR++EM +S++I+EQC+D+L Sbjct 254 LRSAGLPHDLRKSDPYCGYETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIDRLE 313 Query 314 PGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQV 373 PGP M++D+K+AWPA L +GPDGLGNS HI IMG+SMEALIHHFKLVTEG RVP GQV Sbjct 314 PGPVMVADKKIAWPAQLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQV 373 Query 374 YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDP 433 Y AVESP+GELGVH+VSDGGTRPYRVH+RDPSFTNLQ++AAMCEGG VAD+I AVASIDP Sbjct 374 YTAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDP 433 Query 434 VMGGVDR 440 VMGGVDR Sbjct 434 VMGGVDR 440 >gi|320009201|gb|ADW04051.1| NADH dehydrogenase I, D subunit [Streptomyces flavogriseus ATCC 33331] Length=452 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/439 (72%), Positives = 369/439 (85%), Gaps = 1/439 (0%) Query 2 TAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIE 61 T +D+ TV G DW +VV++A +D ERI+VNMGPQHPSTHGVLRLILEI+ Sbjct 15 TPFSDARATTEGTVYTVTGGDWDEVVESAAKSD-DERIIVNMGPQHPSTHGVLRLILEID 73 Query 62 GETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 121 GETV EARCGIGYLHTGIEKNLE+R WTQG TFVTRMDYL+PFFNE AYCLGVEKLLGI Sbjct 74 GETVTEARCGIGYLHTGIEKNLEFRNWTQGTTFVTRMDYLTPFFNEAAYCLGVEKLLGIE 133 Query 122 DEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGL 181 D++P+R V+RVL+MELNRISSHLV +ATGGMELGA T M GFR RE+VL LFE ITGL Sbjct 134 DQVPDRATVLRVLLMELNRISSHLVCIATGGMELGATTIMIYGFRDRELVLDLFELITGL 193 Query 182 RMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDL 241 RMN A+IRPGG+AQDLP A + E +K +++ L E +L N I+KAR Q VGYLDL Sbjct 194 RMNHAFIRPGGLAQDLPMGAVDRLREFVKTMKKNLPEYDKLATGNPIFKARMQDVGYLDL 253 Query 242 TGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWES 301 TGC+ALG TGP+LRS GLPHDLRK++PYCGY+ Y+FDV T D+CDAYGR++IR++EM +S Sbjct 254 TGCVALGATGPVLRSAGLPHDLRKTDPYCGYETYDFDVPTADTCDAYGRFLIRLEEMRQS 313 Query 302 MKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKL 361 ++IVEQCL++L PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+SMEALIHHFKL Sbjct 314 LRIVEQCLERLEPGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALIHHFKL 373 Query 362 VTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 421 VTEG RVPAGQ Y A+ESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG V Sbjct 374 VTEGFRVPAGQAYTALESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQV 433 Query 422 ADLIAAVASIDPVMGGVDR 440 AD+I AVASIDPVMGGVDR Sbjct 434 ADVIVAVASIDPVMGGVDR 452 >gi|328884315|emb|CCA57554.1| NADH-ubiquinone oxidoreductase chain D [Streptomyces venezuelae ATCC 10712] Length=440 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/429 (74%), Positives = 367/429 (86%), Gaps = 2/429 (0%) Query 12 GETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCG 71 G V GG DW++VV +A AD ERI+VNMGPQHPSTHGVLRLILEI+GETV EARCG Sbjct 14 GAVYTVTGG-DWEEVVQSAAKADD-ERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCG 71 Query 72 IGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVI 131 IGYLHTGIEKNLEYR WTQG TFVTRMDYL+ F+NETAYCLGVEKLLGITD+IP+R +VI Sbjct 72 IGYLHTGIEKNLEYRTWTQGTTFVTRMDYLTSFYNETAYCLGVEKLLGITDQIPDRASVI 131 Query 132 RVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPG 191 RVL+MELNR+SSHLV +ATGGMELGA T M GFR RE++L L+E ITGLRMN A+IRPG Sbjct 132 RVLLMELNRLSSHLVCIATGGMELGATTIMIYGFRDREMILDLYELITGLRMNHAFIRPG 191 Query 192 GVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITG 251 G+AQDLPP A + E +K +++ L E +L N I+KAR Q VGYLDLTGCMALG TG Sbjct 192 GLAQDLPPGAVDAVREFVKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATG 251 Query 252 PILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDK 311 PILRS GLPHDLRK++PYCGY++YEF+V T DSCD+YGR+++R++EM +S++IVEQCLD+ Sbjct 252 PILRSAGLPHDLRKTDPYCGYENYEFEVPTADSCDSYGRFLVRLEEMRQSLRIVEQCLDR 311 Query 312 LRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAG 371 L PG M+ D+K+AWPA L +G DGLGNS HI KIMG+SMEALIHHFKLVTEG RVPAG Sbjct 312 LAPGDVMVGDKKIAWPAQLALGTDGLGNSMDHIKKIMGTSMEALIHHFKLVTEGFRVPAG 371 Query 372 QVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASI 431 Q Y AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG VAD+I AVASI Sbjct 372 QAYAAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASI 431 Query 432 DPVMGGVDR 440 DPVMGGVDR Sbjct 432 DPVMGGVDR 440 >gi|296140854|ref|YP_003648097.1| NADH dehydrogenase I subunit D [Tsukamurella paurometabola DSM 20162] gi|296028988|gb|ADG79758.1| NADH dehydrogenase I, D subunit [Tsukamurella paurometabola DSM 20162] Length=426 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/423 (76%), Positives = 356/423 (85%), Gaps = 3/423 (0%) Query 18 AGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHT 77 A G DW ++ A A ERIVVNMGPQHPSTHGVLRLILE++GETV EARCGIG+LHT Sbjct 7 AMGSDWDEI---AAEAVGHERIVVNMGPQHPSTHGVLRLILELDGETVTEARCGIGFLHT 63 Query 78 GIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMME 137 GIEKNLE+R WTQG TFVTRMDYL+P FNETAYCL VEKLLGITDEIPER VIRVLMME Sbjct 64 GIEKNLEFRTWTQGTTFVTRMDYLAPLFNETAYCLAVEKLLGITDEIPERATVIRVLMME 123 Query 138 LNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDL 197 LNR++S LVALATGGMELGA++PM GF RE +L +FE ITGLRMN AYIRPGGVA DL Sbjct 124 LNRVTSDLVALATGGMELGAVSPMLKGFEIREQILNVFETITGLRMNHAYIRPGGVAADL 183 Query 198 PPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRST 257 P +A +I E L+ L L M +L N IW ART+ VGYLDLTG MALGITGP+LRST Sbjct 184 PDDALPQIRELLRTLPPQLDSMAGMLTGNPIWMARTKDVGYLDLTGAMALGITGPVLRST 243 Query 258 GLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPT 317 GLPHDLR+SEPYCGY+ YEFDVITD CD YGRY+IRV EM +S++IVEQCLD+L PGP Sbjct 244 GLPHDLRRSEPYCGYEDYEFDVITDTGCDCYGRYLIRVHEMTQSLRIVEQCLDRLAPGPV 303 Query 318 MISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAV 377 MI D +L WPADL VGPDGLGNS HIA+IMG SME+LIHHFKLVTEG VPAGQV V+V Sbjct 304 MIDDARLGWPADLTVGPDGLGNSRAHIAEIMGESMESLIHHFKLVTEGFAVPAGQVAVSV 363 Query 378 ESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGG 437 E+PRGEL VH VSDGGTRPYRVH+RDPSFTNLQ+VAAMCEGGMV+D+IAAVASIDPVMGG Sbjct 364 EAPRGELLVHAVSDGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDVIAAVASIDPVMGG 423 Query 438 VDR 440 VDR Sbjct 424 VDR 426 >gi|345001410|ref|YP_004804264.1| NADH dehydrogenase I, D subunit [Streptomyces sp. SirexAA-E] gi|344317036|gb|AEN11724.1| NADH dehydrogenase I, D subunit [Streptomyces sp. SirexAA-E] Length=440 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/439 (72%), Positives = 366/439 (84%), Gaps = 1/439 (0%) Query 2 TAIADSAGGAGETVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIE 61 T+ A S TV G DW +VV++A AD ERI+VNMGPQHPSTHGVLRLILEI+ Sbjct 3 TSQASSRTTTEGTVYTVTGGDWDEVVESAAKAD-DERIIVNMGPQHPSTHGVLRLILEID 61 Query 62 GETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGIT 121 GETV EARCGIGYLHTGIEKNLE+R WTQG TFVTRMDYL+PFFNE AYCLGVEKLLGI Sbjct 62 GETVQEARCGIGYLHTGIEKNLEFRSWTQGTTFVTRMDYLTPFFNEAAYCLGVEKLLGIE 121 Query 122 DEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGL 181 D+IP+R V+RVL+MELNRISSHLV +ATGGMELGA T M GFR RE+VL LFE ITGL Sbjct 122 DQIPDRATVLRVLLMELNRISSHLVCVATGGMELGATTIMIYGFRDRELVLDLFEMITGL 181 Query 182 RMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDL 241 RMN A+IRPGG+AQDLPP A I E + +R+ L E +L N I+KAR Q VGYLDL Sbjct 182 RMNHAFIRPGGLAQDLPPGAVDRIREFITTMRKNLPEYDKLATGNPIFKARMQDVGYLDL 241 Query 242 TGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWES 301 GCMALG TGP+LRS GLPHDLR+++PYCGY+ Y+F+V T D+CDAYGR++IR++EM +S Sbjct 242 AGCMALGATGPVLRSAGLPHDLRRTDPYCGYETYDFEVPTADTCDAYGRFLIRLEEMRQS 301 Query 302 MKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKL 361 ++IVEQCLD+L PGP M++D+K+AWPA L +GPDGLGNS HI IMG+SMEALIHHFKL Sbjct 302 LRIVEQCLDRLEPGPVMVADKKIAWPAQLALGPDGLGNSLDHIRNIMGTSMEALIHHFKL 361 Query 362 VTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMV 421 VTEG RVP GQ Y A+ESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQ++AAMCEGG V Sbjct 362 VTEGFRVPPGQTYTALESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQV 421 Query 422 ADLIAAVASIDPVMGGVDR 440 AD+I AVASIDPVMGGVDR Sbjct 422 ADVIVAVASIDPVMGGVDR 440 >gi|254391140|ref|ZP_05006347.1| NADH dehydrogenase subunit D [Streptomyces clavuligerus ATCC 27064] gi|197704834|gb|EDY50646.1| NADH dehydrogenase subunit D [Streptomyces clavuligerus ATCC 27064] Length=448 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/449 (71%), Positives = 371/449 (83%), Gaps = 10/449 (2%) Query 1 MTAIADSAGGAGE---------TVLVAGGQDWQQVVDAARSADPGERIVVNMGPQHPSTH 51 M A AD +GG TV G DW +V ++A AD ERIVVNMGPQHPSTH Sbjct 1 MDAPADPSGGTAPAQSRETTEGTVYTVTGGDWDEVAESAARAD-DERIVVNMGPQHPSTH 59 Query 52 GVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYC 111 GVLRLILEI+GETV EARCGIGYLHTGIEKNLE+R WTQG TFVTRMDYL+PFFNE AYC Sbjct 60 GVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTTFVTRMDYLTPFFNEAAYC 119 Query 112 LGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIV 171 L VEKLLGI D+IP+R +VIRVL+MELNR+SSHLV +ATGGMELGA T M GFR RE++ Sbjct 120 LAVEKLLGIEDQIPDRASVIRVLLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELI 179 Query 172 LTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKA 231 L L+E ITGLRMN AYIRPGG+AQDLP A + E +K +++ L E +L N I+KA Sbjct 180 LDLYELITGLRMNHAYIRPGGLAQDLPAGAVDRLREFVKTMKKNLPEYDKLATGNPIFKA 239 Query 232 RTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRY 291 R QG+G+LDLTGCMALG TGPILR+ GLPHDLRK++PYCGY+ Y+F+V T D+CD+YGR+ Sbjct 240 RMQGIGHLDLTGCMALGATGPILRAAGLPHDLRKTDPYCGYETYDFEVPTADTCDSYGRF 299 Query 292 MIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSS 351 +IR++EM +S++IVEQC+++L PGP M++D+K+AWPA L +GPDGLGNS HI KIMG+S Sbjct 300 LIRLEEMRQSLRIVEQCVERLAPGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTS 359 Query 352 MEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQS 411 MEALIHHFKLVTEG RVPAGQ Y AVESP+GELG H+VSDGGTRPYRVH+RDPSFTNLQS Sbjct 360 MEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGAHVVSDGGTRPYRVHFRDPSFTNLQS 419 Query 412 VAAMCEGGMVADLIAAVASIDPVMGGVDR 440 +AAMCEGG VAD+I AVASIDPVMGGVDR Sbjct 420 MAAMCEGGQVADVIVAVASIDPVMGGVDR 448 Lambda K H 0.320 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 903484963458 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40