BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3149
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycob... 511 3e-143
gi|340628125|ref|YP_004746577.1| putative NADH dehydrogenase I s... 511 4e-143
gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Myc... 497 8e-139
gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subu... 431 4e-119
gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Myco... 417 5e-115
gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) ... 416 2e-114
gi|342861057|ref|ZP_08717706.1| NADH dehydrogenase subunit E [My... 405 2e-111
gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [My... 404 5e-111
gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [My... 403 1e-110
gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [My... 402 3e-110
gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Myco... 401 6e-110
gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycob... 399 2e-109
gi|336459342|gb|EGO38285.1| NADH:ubiquinone oxidoreductase 24 kD... 399 2e-109
gi|333991503|ref|YP_004524117.1| NADH dehydrogenase I (chain E) ... 351 6e-95
gi|333922082|ref|YP_004495663.1| putative NADH dehydrogenase sub... 334 8e-90
gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhod... 323 1e-86
gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subun... 322 4e-86
gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subu... 322 4e-86
gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Myco... 321 5e-86
gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [M... 321 8e-86
gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Di... 320 8e-86
gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [R... 320 9e-86
gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocar... 319 2e-85
gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase cha... 316 2e-84
gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [St... 315 5e-84
gi|345001411|ref|YP_004804265.1| NADH-quinone oxidoreductase sub... 315 5e-84
gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [St... 312 3e-83
gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [St... 312 4e-83
gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [St... 310 9e-83
gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit ... 310 2e-82
gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductas... 309 2e-82
gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [St... 309 2e-82
gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Myco... 309 2e-82
gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase sub... 309 3e-82
gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptom... 309 3e-82
gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Myco... 308 5e-82
gi|229821705|ref|YP_002883231.1| NADH dehydrogenase subunit E [B... 305 5e-81
gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE ... 304 7e-81
gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE... 302 3e-80
gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [S... 302 4e-80
gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chai... 301 5e-80
gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Strep... 301 5e-80
gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [St... 301 5e-80
gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [M... 301 7e-80
gi|345008472|ref|YP_004810826.1| NADH-quinone oxidoreductase sub... 300 1e-79
gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Strept... 300 1e-79
gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [M... 299 3e-79
gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subu... 298 5e-79
gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit ... 298 7e-79
gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Strep... 297 8e-79
>gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Rv]
gi|15842725|ref|NP_337762.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CDC1551]
gi|31794325|ref|NP_856818.1| NADH dehydrogenase subunit E [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=252
Score = 511 bits (1317), Expect = 3e-143, Method: Compositional matrix adjust.
Identities = 251/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+TQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP
Sbjct 1 MTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA
Sbjct 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN
Sbjct 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
Query 241 DMQAPPTPGADE 252
DMQAPPTPGADE
Sbjct 241 DMQAPPTPGADE 252
>gi|340628125|ref|YP_004746577.1| putative NADH dehydrogenase I subunit E NuoE [Mycobacterium canettii
CIPT 140010059]
gi|340006315|emb|CCC45494.1| putative NADH dehydrogenase I (chain E) NUOE (NADH-ubiquinone
oxidoreductase chain E) [Mycobacterium canettii CIPT 140010059]
Length=252
Score = 511 bits (1316), Expect = 4e-143, Method: Compositional matrix adjust.
Identities = 250/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+TQPPGQPVFIRLGPPPDEPNQFV+EGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP
Sbjct 1 MTQPPGQPVFIRLGPPPDEPNQFVIEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA
Sbjct 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN
Sbjct 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
Query 241 DMQAPPTPGADE 252
DMQAPPTPGADE
Sbjct 241 DMQAPPTPGADE 252
>gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Mycobacterium tuberculosis CDC1551A]
gi|339295983|gb|AEJ48094.1| hypothetical protein CCDC5079_2904 [Mycobacterium tuberculosis
CCDC5079]
gi|339299592|gb|AEJ51702.1| hypothetical protein CCDC5180_2865 [Mycobacterium tuberculosis
CCDC5180]
Length=244
Score = 497 bits (1279), Expect = 8e-139, Method: Compositional matrix adjust.
Identities = 243/244 (99%), Positives = 244/244 (100%), Gaps = 0/244 (0%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
+FIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE
Sbjct 1 MFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 60
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF
Sbjct 61 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 120
Query 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR
Sbjct 121 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 180
Query 189 SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPPTP 248
SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPPTP
Sbjct 181 SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPPTP 240
Query 249 GADE 252
GADE
Sbjct 241 GADE 244
>gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subunit E [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896086|gb|EFG75753.1| NADH-quinone oxidoreductase subunit E [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=252
Score = 431 bits (1109), Expect = 4e-119, Method: Compositional matrix adjust.
Identities = 207/250 (83%), Positives = 227/250 (91%), Gaps = 0/250 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPP+EPN FV EGAP++Y P+V ARLEVDAKEIIGRYPD+RSALLP
Sbjct 1 MTGPQGQPVFVRLGPPPEEPNAFVTEGAPQTYSPEVRARLEVDAKEIIGRYPDKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ EDSYLTPAGL FC DQLGL+GAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQAEDSYLTPAGLEFCGDQLGLSGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
+MGGDA+FD LKEHLG+G+DETT DG VTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 IMGGDAVFDALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRS PK PTRGAPLC FR+TSRILAGLPDQRPD+GQGG G TLAGL+VA+++
Sbjct 181 RELVDSLRSGDPKPPTRGAPLCAFRETSRILAGLPDQRPDQGQGGAGEATLAGLKVAKEH 240
Query 241 DMQAPPTPGA 250
MQAP PG+
Sbjct 241 GMQAPTPPGS 250
>gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Mycobacterium ulcerans Agy99]
gi|118570060|gb|ABL04811.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase
chain E) [Mycobacterium ulcerans Agy99]
Length=251
Score = 417 bits (1073), Expect = 5e-115, Method: Compositional matrix adjust.
Identities = 215/249 (87%), Positives = 231/249 (93%), Gaps = 0/249 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+ P QPVF+RLGPPP+EPNQF VEGAP++YPPD LARLE++AKEIIGRYPD+RSALLP
Sbjct 1 MNAPQSQPVFVRLGPPPEEPNQFTVEGAPQAYPPDALARLEIEAKEIIGRYPDQRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQGEDSYLTPAGL+FCA+QLGLTGAEVSAVASFYTMYRR PTGEYLVGVCTNTLCA
Sbjct 61 LLHLVQGEDSYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGEYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
VMGGDAIF+ LK+HLGVG+DETTSDG VTL HIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 VMGGDAIFETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRS P APTRGAPLCGFRQTSRILAGLPD RPD+GQGG GA TLAGL+VA+ N
Sbjct 181 RELVDSLRSGEPIAPTRGAPLCGFRQTSRILAGLPDTRPDQGQGGAGAATLAGLRVAQDN 240
Query 241 DMQAPPTPG 249
DMQAPP PG
Sbjct 241 DMQAPPAPG 249
>gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase
chain E) [Mycobacterium marinum M]
gi|183174820|gb|ACC39930.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase
chain E) [Mycobacterium marinum M]
Length=251
Score = 416 bits (1068), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 214/249 (86%), Positives = 230/249 (93%), Gaps = 0/249 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+ P QPVF+RLGPPP+EPNQF VEGAP++Y PD LARLE++AKEIIGRYPD+RSALLP
Sbjct 1 MNAPQSQPVFVRLGPPPEEPNQFTVEGAPQAYSPDALARLEIEAKEIIGRYPDQRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQGEDSYLTPAGL+FCA+QLGLTGAEVSAVASFYTMYRR PTGEYLVGVCTNTLCA
Sbjct 61 LLHLVQGEDSYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGEYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
VMGGDAIF+ LK+HLGVG+DETTSDG VTL HIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 VMGGDAIFETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRS P APTRGAPLCGFRQTSRILAGLPD RPD+GQGG GA TLAGL+VA+ N
Sbjct 181 RELVDSLRSGEPIAPTRGAPLCGFRQTSRILAGLPDTRPDQGQGGAGAATLAGLRVAQDN 240
Query 241 DMQAPPTPG 249
DMQAPP PG
Sbjct 241 DMQAPPAPG 249
>gi|342861057|ref|ZP_08717706.1| NADH dehydrogenase subunit E [Mycobacterium colombiense CECT
3035]
gi|342131501|gb|EGT84771.1| NADH dehydrogenase subunit E [Mycobacterium colombiense CECT
3035]
Length=251
Score = 405 bits (1042), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 207/248 (84%), Positives = 229/248 (93%), Gaps = 0/248 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPPDEPN FVVEGAP++YPP+V ARLEVDAKEIIGRYP++RSALLP
Sbjct 1 MTGPQGQPVFLRLGPPPDEPNAFVVEGAPKTYPPEVRARLEVDAKEIIGRYPNKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ +DSYLTPAGL FC +QLGLTGAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQSQDSYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
+MGGDAIFD LKEHLGVG+DETT+DG VTLQHIECNAACDYAPVVMVNWEF+DNQTPESA
Sbjct 121 IMGGDAIFDSLKEHLGVGNDETTADGSVTLQHIECNAACDYAPVVMVNWEFYDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRS P+ PTRGAPLC FR+TSRILAGLPD+RPD+GQGG GA TLAGL+VA+++
Sbjct 181 RELVDSLRSGEPQPPTRGAPLCVFRETSRILAGLPDERPDQGQGGAGAATLAGLKVAKEH 240
Query 241 DMQAPPTP 248
MQAP P
Sbjct 241 GMQAPSAP 248
>gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [Mycobacterium intracellulare ATCC
13950]
Length=252
Score = 404 bits (1039), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 208/248 (84%), Positives = 228/248 (92%), Gaps = 0/248 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPPDEPN FVVEGAP SYPP+V ARLEVDAKEI+GRYP++RSALLP
Sbjct 1 MTGPQGQPVFLRLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPEKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ +DSYLTPAGL FC +QLGL+GAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQAQDSYLTPAGLEFCGEQLGLSGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
VMGGDAIFD LKEHLG+G+DETT+DG VTLQHIECNAACDYAPVVMVNWEFFDNQT ESA
Sbjct 121 VMGGDAIFDALKEHLGIGNDETTADGSVTLQHIECNAACDYAPVVMVNWEFFDNQTCESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLRS PKAPTRGAPLC FR+TSRILAGLPD+RPD+GQGG GA TLAGL+VA+++
Sbjct 181 RELVDSLRSGEPKAPTRGAPLCAFRETSRILAGLPDERPDQGQGGAGAATLAGLKVAKEH 240
Query 241 DMQAPPTP 248
MQAP P
Sbjct 241 GMQAPGAP 248
>gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [Mycobacterium kansasii ATCC 12478]
Length=248
Score = 403 bits (1036), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 206/240 (86%), Positives = 224/240 (94%), Gaps = 0/240 (0%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
+FIRLGPPP+EPNQFVVEGAP++YPP+V ARLEVDAKEIIGRYPD+RSALLPLLHLVQGE
Sbjct 1 MFIRLGPPPEEPNQFVVEGAPQTYPPEVQARLEVDAKEIIGRYPDKRSALLPLLHLVQGE 60
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
DSYLTPAGL FCA QLGLTGAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA+MGGDAIF
Sbjct 61 DSYLTPAGLEFCATQLGLTGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCAIMGGDAIF 120
Query 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
+ LKEHLG+G+DETT+DG VTLQHIECNAACDYAPVVMVNWEFFDNQTPESA ELVDSLR
Sbjct 121 EELKEHLGIGNDETTADGTVTLQHIECNAACDYAPVVMVNWEFFDNQTPESACELVDSLR 180
Query 189 SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPPTP 248
+ PK PTRGAPLC FR+TSRILAGLPDQRPD+GQGG GA TLAGL+VA++N MQAP P
Sbjct 181 TGNPKEPTRGAPLCAFRETSRILAGLPDQRPDQGQGGAGAATLAGLRVAKENGMQAPEPP 240
>gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. avium
ATCC 25291]
Length=252
Score = 402 bits (1032), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 207/248 (84%), Positives = 227/248 (92%), Gaps = 0/248 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPPDEPN FVVEGAP SYPP+V ARLEVDAKEI+GRYPD+RSALLP
Sbjct 1 MTGPQGQPVFLRLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ +DSYLTPAGL FC +QLGLTGAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQSQDSYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
+MGGDAIFD LKEHLG+G+DETT DG VTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 IMGGDAIFDALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLR+ P+ PTRGAPLC FR+TSRILAGLPD+RPD+GQGG GA TLAGL+VA+++
Sbjct 181 RELVDSLRAGEPRHPTRGAPLCVFRETSRILAGLPDERPDQGQGGAGAATLAGLKVAKEH 240
Query 241 DMQAPPTP 248
MQAP P
Sbjct 241 GMQAPKPP 248
>gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Mycobacterium avium 104]
gi|118164912|gb|ABK65809.1| NADH-quinone oxidoreductase chain e [Mycobacterium avium 104]
Length=252
Score = 401 bits (1030), Expect = 6e-110, Method: Compositional matrix adjust.
Identities = 207/248 (84%), Positives = 227/248 (92%), Gaps = 0/248 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPPDEPN FVVEGAP SYPP+V ARLEVDAKEI+GRYPD+RSALLP
Sbjct 1 MTGPQGQPVFLRLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ +DSYLTPAGL FC +QLGLTGAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQSQDSYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
+MGGDAIFD LKEHLG+G+DETT DG VTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 IMGGDAIFDALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLR+ P+ PTRGAPLC FR+TSRILAGLPD+RPD+GQGG GA TLAGL+VA+++
Sbjct 181 RELVDSLRAGKPRHPTRGAPLCVFRETSRILAGLPDERPDQGQGGAGAATLAGLKVAKEH 240
Query 241 DMQAPPTP 248
MQAP P
Sbjct 241 GMQAPYPP 248
>gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398123|gb|AAS05753.1| NuoE [Mycobacterium avium subsp. paratuberculosis K-10]
Length=252
Score = 399 bits (1024), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 205/245 (84%), Positives = 225/245 (92%), Gaps = 0/245 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPPDEPN FVVEGAP SYPP+V ARLEVDAKEI+GRYPD+RSALLP
Sbjct 1 MTGPQGQPVFLRLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ +DSYLTPAGL FC +QLGLTGAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQSQDSYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
+MGGDAIFD LKEHLG+ +DETT DG VTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 IMGGDAIFDALKEHLGIDNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLR+ P+ PTRGAPLC FR+TSRILAGLPD+RPD+GQGG GA TLAGL+VA+++
Sbjct 181 RELVDSLRAGEPRHPTRGAPLCVFRETSRILAGLPDERPDQGQGGAGAATLAGLKVAKEH 240
Query 241 DMQAP 245
MQAP
Sbjct 241 GMQAP 245
>gi|336459342|gb|EGO38285.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Mycobacterium avium
subsp. paratuberculosis S397]
Length=252
Score = 399 bits (1024), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 205/245 (84%), Positives = 225/245 (92%), Gaps = 0/245 (0%)
Query 1 VTQPPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLP 60
+T P GQPVF+RLGPPPDEPN FVVEGAP SYPP+V ARLEVDAKEI+GRYPD+RSALLP
Sbjct 1 MTGPQGQPVFLRLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKRSALLP 60
Query 61 LLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCA 120
LLHLVQ +DSYLTPAGL FC +QLGLTGAEVSAVASFYTMYRR PTG+YLVGVCTNTLCA
Sbjct 61 LLHLVQSQDSYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGDYLVGVCTNTLCA 120
Query 121 VMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
+MGGDAIFD LKEHLG+ +DETT DG VTLQHIECNAACDYAPVVMVNWEFFDNQTPESA
Sbjct 121 IMGGDAIFDALKEHLGIDNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESA 180
Query 181 RELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKN 240
RELVDSLR+ P+ PTRGAPLC FR+TSRILAGLPD+RPD+GQGG GA TLAGL+VA+++
Sbjct 181 RELVDSLRAGEPRHPTRGAPLCVFRETSRILAGLPDERPDQGQGGAGAATLAGLKVAKEH 240
Query 241 DMQAP 245
MQAP
Sbjct 241 GMQAP 245
>gi|333991503|ref|YP_004524117.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase
chain E) [Mycobacterium sp. JDM601]
gi|333487471|gb|AEF36863.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase
chain E) [Mycobacterium sp. JDM601]
Length=277
Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/242 (72%), Positives = 196/242 (81%), Gaps = 0/242 (0%)
Query 6 GQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLV 65
G VF++LG PP+EPNQF APRSY +V ARLE DAKEIIGRYP RSA+LPLLHLV
Sbjct 29 GNRVFLQLGRPPEEPNQFNHPDAPRSYSDEVRARLEADAKEIIGRYPQPRSAILPLLHLV 88
Query 66 QGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGD 125
Q EDSY+TPAGL F AD LGLTGA+V+ VASFY+MYRR+PTGEYLVGVCTNTLCAVMGGD
Sbjct 89 QAEDSYITPAGLSFVADVLGLTGADVAGVASFYSMYRRKPTGEYLVGVCTNTLCAVMGGD 148
Query 126 AIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVD 185
AIFD LKEHL V +TT+DG VTL+ IECNAACD APVVMVNWEFFD QTPESAR+L D
Sbjct 149 AIFDALKEHLDVNDTQTTADGKVTLERIECNAACDCAPVVMVNWEFFDQQTPESARDLTD 208
Query 186 SLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAP 245
+LRS P+RG PL FR+T+R+LAG D RPD+GQGGP PTLAGL+ A ++ M AP
Sbjct 209 ALRSGGEVRPSRGLPLTSFRETARVLAGFADDRPDDGQGGPAGPTLAGLRFAHEHGMAAP 268
Query 246 PT 247
+
Sbjct 269 ES 270
>gi|333922082|ref|YP_004495663.1| putative NADH dehydrogenase subunit E [Amycolicicoccus subflavus
DQS3-9A1]
gi|333484303|gb|AEF42863.1| putative NADH dehydrogenase subunit E [Amycolicicoccus subflavus
DQS3-9A1]
Length=301
Score = 334 bits (856), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 159/242 (66%), Positives = 191/242 (79%), Gaps = 0/242 (0%)
Query 7 QPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQ 66
+PVF++LG P+E V EGA SYP D+ RL A++II RYP+ RSALLPLLHLVQ
Sbjct 5 EPVFLQLGQKPEEKGLIVREGARGSYPADISERLGEAAEQIIARYPESRSALLPLLHLVQ 64
Query 67 GEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDA 126
ED +TPAG+ FCA LGL+GAEV+AVA+FY+MYRR PTG+Y VGVCTNTLCAVMGGD
Sbjct 65 SEDGCITPAGIDFCARHLGLSGAEVAAVATFYSMYRRTPTGDYHVGVCTNTLCAVMGGDM 124
Query 127 IFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDS 186
IF LK+HLG+GH ETT+DG VTL+HIECNAACDYAPV+M+NWEFFD+QTP+SA+++VD
Sbjct 125 IFAELKKHLGIGHGETTADGKVTLEHIECNAACDYAPVMMINWEFFDDQTPQSAKQIVDD 184
Query 187 LRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPP 246
LRS PTRGAPLC FR+T+RILAG PD RP PG PTL GL++AR+ M+AP
Sbjct 185 LRSGKTVTPTRGAPLCTFRETARILAGFPDPRPGALDTEPGDPTLIGLRIARERGMEAPE 244
Query 247 TP 248
P
Sbjct 245 AP 246
>gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
gi|110822406|gb|ABG97690.1| probable NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
Length=307
Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 162/244 (67%), Positives = 189/244 (78%), Gaps = 2/244 (0%)
Query 4 PPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLH 63
P P+FI GP P+E V GA YPP+V ARL+ DA +IGRYP+ RSALLPLLH
Sbjct 7 PKQTPIFIEFGPRPEENGLLVRPGAREEYPPEVGARLDADADVVIGRYPNSRSALLPLLH 66
Query 64 LVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMG 123
LVQ ED +TPAG+ FCA +LGLTGAEV+AVA+FY+MYRR PTG+Y VGVCTNTLCA+MG
Sbjct 67 LVQAEDGCITPAGIEFCAGRLGLTGAEVAAVATFYSMYRRDPTGDYYVGVCTNTLCAIMG 126
Query 124 GDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESAREL 183
GDAI L+EHL + H T++DG VTL+HIECNAACDYAPVVMVNWEFFDNQTPESAR L
Sbjct 127 GDAILAALEEHLDLPHGGTSADGKVTLEHIECNAACDYAPVVMVNWEFFDNQTPESARSL 186
Query 184 VDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDE-GQGG-PGAPTLAGLQVARKND 241
VDSLRS +P+RGA LC FR+T+RILAG PD+RP +GG G TLAGL+VA +
Sbjct 187 VDSLRSGERVSPSRGAALCTFRETARILAGFPDERPGAPAEGGTAGDATLAGLRVAHERG 246
Query 242 MQAP 245
M AP
Sbjct 247 MTAP 250
>gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subunit [Streptomyces flavogriseus
ATCC 33331]
Length=293
Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 159/224 (71%), Positives = 181/224 (81%), Gaps = 6/224 (2%)
Query 21 NQFVVEGAPR----SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAG 76
NQ V G P+ +YP +VLARLE DAKE+I RYP RSALLPLLHLVQ E+ Y++ G
Sbjct 5 NQEVSLGMPQLPAPAYPAEVLARLEADAKEVIARYPGSRSALLPLLHLVQSEEGYVSRTG 64
Query 77 LRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLG 136
+ FCADQLGLT AEV+AVA+FYTMYRRRP+G+Y VGVCTNTLCAVMGGDAIFDRLKEHLG
Sbjct 65 MAFCADQLGLTTAEVTAVATFYTMYRRRPSGDYQVGVCTNTLCAVMGGDAIFDRLKEHLG 124
Query 137 VGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPT 196
VG+DETT DG VTL+HIECNAACD+APVVMVNWEFFDNQTPESA LVD L + PT
Sbjct 125 VGNDETTDDGKVTLEHIECNAACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPT 184
Query 197 RGAPLCGFRQTSRILAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
RGAPLC ++ T+RILAG PD RP E GG GA +L GL++AR
Sbjct 185 RGAPLCTYKDTARILAGFPDPRPGAVEASGGAGAASLIGLKLAR 228
>gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
SK121]
gi|229322179|gb|EEN87965.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
SK121]
Length=274
Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/266 (63%), Positives = 195/266 (74%), Gaps = 16/266 (6%)
Query 1 VTQPPGQP-VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRY--PD---- 53
+T P G VFI LGP PDEP Q V GA SYPPDVLARL+ DA+ +I RY PD
Sbjct 1 MTGPNGSSRVFIELGPRPDEPTQLVRPGARSSYPPDVLARLDADAETVIARYREPDAAAT 60
Query 54 -RRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVG 112
RSALLPLLHLVQ ED Y+TPAG+ FC+ +LGLTGAEV+AV++FY+MYRR PTGEYLVG
Sbjct 61 TSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAVSTFYSMYRRGPTGEYLVG 120
Query 113 VCTNTLCAVMGGDAIFDRLKEHLGV-------GHDETTSDGVVTLQHIECNAACDYAPVV 165
VCTNTLCA+MGGD I L+EHLG GH +TSDG +TL+HIECNAACDYAPV+
Sbjct 121 VCTNTLCAIMGGDDILAALEEHLGSAGSRDEGGHSISTSDGKITLEHIECNAACDYAPVM 180
Query 166 MVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGG 225
M+NWEFFDNQTPESAR LVD+LR+ P+RGA LC FRQT+R LAG PD R + +
Sbjct 181 MINWEFFDNQTPESARSLVDALRAGERVTPSRGATLCSFRQTARTLAGFPDTRIEAAEAQ 240
Query 226 P-GAPTLAGLQVARKNDMQAPPTPGA 250
G TLAGL+++R +D P + A
Sbjct 241 TIGGATLAGLRISRSHDDNPPGSASA 266
>gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
gi|119867646|ref|YP_937598.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
gi|108768965|gb|ABG07687.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
gi|119693735|gb|ABL90808.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
Length=294
Score = 321 bits (823), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 165/241 (69%), Positives = 187/241 (78%), Gaps = 6/241 (2%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
VF+ LG PDEP V G P +YP DV ARL DA I+ RYP RSALLPLLHLVQ E
Sbjct 10 VFLELGQRPDEPGPPV--GGPTAYPADVAARLIADAARIVTRYPQARSALLPLLHLVQAE 67
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
D LT AG+ FCA+QLGLT AEV+AVA+FY+MYRR PTG+YLVGVCTNTLCA+MGGD I
Sbjct 68 DGCLTSAGIAFCANQLGLTDAEVTAVATFYSMYRRTPTGDYLVGVCTNTLCAIMGGDEIL 127
Query 129 DRLKEHLGVGHDETT--SDGV--VTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELV 184
D L++HLGV +TT ++G+ VTL+HIECNAACDYAPVVMVNWEFFDNQTP SAR+LV
Sbjct 128 DALQDHLGVAAGQTTDPAEGLAAVTLEHIECNAACDYAPVVMVNWEFFDNQTPASARDLV 187
Query 185 DSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQA 244
DSLR+ TP APTRGAPLC FR+T+R LAGL D R GG G TLAGL+VAR N M A
Sbjct 188 DSLRAGTPAAPTRGAPLCTFRETARTLAGLADPRAATNPGGTGEATLAGLRVARANGMAA 247
Query 245 P 245
P
Sbjct 248 P 248
>gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
gi|126233944|gb|ABN97344.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
Length=294
Score = 321 bits (822), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 164/241 (69%), Positives = 186/241 (78%), Gaps = 6/241 (2%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
VF+ LG PDEP V G P +YP DV ARL DA I+ RYP RSALLPLLHLVQ E
Sbjct 10 VFLELGQRPDEPGPPV--GGPTAYPADVAARLTADAARIVTRYPQARSALLPLLHLVQAE 67
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
D LT AG+ FCA+QLGLT AEV+AVA+FY+MYRR PTG+YLVGVCTNTLCA+MGGD I
Sbjct 68 DGCLTSAGIAFCANQLGLTDAEVTAVATFYSMYRRTPTGDYLVGVCTNTLCAIMGGDEIL 127
Query 129 DRLKEHLGVGHDETT--SDGV--VTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELV 184
D L++HLGV +TT ++G+ VTL+HIECNAACDYAPVVMVNWEFFDNQTP SAR+LV
Sbjct 128 DALQDHLGVAAGQTTDPAEGLAAVTLEHIECNAACDYAPVVMVNWEFFDNQTPTSARDLV 187
Query 185 DSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQA 244
DSLR+ TP PTRGAPLC FR+T+R LAGL D R GG G TLAGL+VAR N M A
Sbjct 188 DSLRAGTPATPTRGAPLCTFRETARTLAGLADPRTATNPGGTGEATLAGLRVARANGMAA 247
Query 245 P 245
P
Sbjct 248 P 248
>gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
gi|319435878|gb|EFV91084.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
Length=256
Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 158/246 (65%), Positives = 185/246 (76%), Gaps = 0/246 (0%)
Query 6 GQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLV 65
+PVF++ G PDEP V A R+YP DVL RL DA I+ RYP RSALLPLLHLV
Sbjct 2 SEPVFLQFGQQPDEPGAIVRPDARRTYPDDVLERLRADADLIVARYPQARSALLPLLHLV 61
Query 66 QGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGD 125
Q ED +LTPAG+ FCA + L+ AEV AVA+FY+MYRR PTG+YLVGVCTNTLCAVMGGD
Sbjct 62 QAEDGHLTPAGIEFCALVVDLSPAEVMAVATFYSMYRRTPTGDYLVGVCTNTLCAVMGGD 121
Query 126 AIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVD 185
I+ L++HLG+ TT DG +TL+ IECNAACDYAPVVM+NWEFFD+QTP+SAR +VD
Sbjct 122 EIYADLRDHLGLDGPGTTDDGRITLERIECNAACDYAPVVMINWEFFDDQTPDSARRVVD 181
Query 186 SLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAP 245
LR+ P PTRGAPLC FR+T+RILAG PD RP G PG TLAGL+VAR DM+AP
Sbjct 182 DLRAGRPVTPTRGAPLCTFRETARILAGFPDPRPGSNDGAPGEATLAGLRVARSRDMRAP 241
Query 246 PTPGAD 251
P D
Sbjct 242 EPPAPD 247
>gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [Rhodococcus opacus B4]
gi|226243874|dbj|BAH54222.1| NADH-quinone oxidoreductase chain E [Rhodococcus opacus B4]
Length=307
Score = 320 bits (821), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 160/244 (66%), Positives = 187/244 (77%), Gaps = 2/244 (0%)
Query 4 PPGQPVFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLH 63
P P+FI GP P+E + V GA +PP V ARL+ DA ++ RYP+ RSALLPLLH
Sbjct 7 PAQPPIFIEFGPRPEERGRLVRPGAREEHPPAVRARLDADADVVVARYPNSRSALLPLLH 66
Query 64 LVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMG 123
LVQ ED +TPAG+ FCA +LGLTGAEV+AVA+FY+MYRR PTG+Y VGVCTNTLCAVMG
Sbjct 67 LVQAEDGCITPAGVEFCAGRLGLTGAEVAAVATFYSMYRRDPTGDYYVGVCTNTLCAVMG 126
Query 124 GDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESAREL 183
GDAI L+ HL + H TT+DG VTL+HIECNAACDYAPVVMVNWEFFDNQ PESAR L
Sbjct 127 GDAILAALEAHLDLPHGGTTADGKVTLEHIECNAACDYAPVVMVNWEFFDNQNPESARSL 186
Query 184 VDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPD--EGQGGPGAPTLAGLQVARKND 241
VD+LRS +P+RGA LC FR+T+RILAG PD+RP EG G G TLAGL+VAR+
Sbjct 187 VDALRSGDRVSPSRGATLCTFRETARILAGFPDERPGALEGGGTAGDATLAGLRVARERG 246
Query 242 MQAP 245
M AP
Sbjct 247 MTAP 250
>gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocardia farcinica IFM 10152]
gi|54016140|dbj|BAD57510.1| putative NADH dehydrogenase I chain E [Nocardia farcinica IFM
10152]
Length=245
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 150/217 (70%), Positives = 176/217 (82%), Gaps = 0/217 (0%)
Query 29 PRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTG 88
P YPP V RL +DAKEIIGRYP RSALLPLLHLVQ ED Y+T G+ FCA+QLGLTG
Sbjct 21 PEPYPPSVRERLALDAKEIIGRYPQPRSALLPLLHLVQSEDGYVTATGIEFCAEQLGLTG 80
Query 89 AEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVV 148
AEV+AVA+FY+M+RR PTG+Y VGVCTNTLCAV+GGDAI L EHLG+ ETT+DG +
Sbjct 81 AEVTAVATFYSMFRRTPTGDYHVGVCTNTLCAVLGGDAILASLTEHLGIAAGETTADGAI 140
Query 149 TLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTS 208
T++HIECNAACD+APVVMVNWEFFDNQTPESAR LVD+LR+ P P+RGAPLC FR+T+
Sbjct 141 TVEHIECNAACDFAPVVMVNWEFFDNQTPESARALVDALRAGEPVRPSRGAPLCTFRETA 200
Query 209 RILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAP 245
R+LAG PD+RP G G TLAGL++AR +M AP
Sbjct 201 RLLAGFPDERPGALDGAAGHATLAGLEIARDRNMTAP 237
>gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis
PR4]
gi|226185327|dbj|BAH33431.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis
PR4]
Length=274
Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/266 (62%), Positives = 193/266 (73%), Gaps = 16/266 (6%)
Query 1 VTQPPGQP-VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRY--PDR--- 54
+T P G VFI LGP P+EP Q V GA SYPPDVLARL+ DA+ +I RY PD
Sbjct 1 MTGPNGSSRVFIELGPRPEEPTQLVRPGARSSYPPDVLARLDADAETVIARYREPDSAAT 60
Query 55 --RSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVG 112
RSALLPLLHLVQ ED Y+TPAG+ FC+ +LGLTGAEV+AV++FY+MYRR PTGEYLVG
Sbjct 61 TSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAVSTFYSMYRRGPTGEYLVG 120
Query 113 VCTNTLCAVMGGDAIFDRLKEHLGV-------GHDETTSDGVVTLQHIECNAACDYAPVV 165
VCTNTLCA+MGGD I L+EHLG GH +TSDG +TL+HIECNAACDYAPV+
Sbjct 121 VCTNTLCAIMGGDDILAALEEHLGSTGSRDEGGHSISTSDGKITLEHIECNAACDYAPVM 180
Query 166 MVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGG 225
M+NWEFFDNQTPESAR LVD+LR+ P RGA LC FRQT+R LAG PD R + +
Sbjct 181 MINWEFFDNQTPESARSLVDALRAGERVTPDRGATLCSFRQTARTLAGFPDTRIEAAEAQ 240
Query 226 P-GAPTLAGLQVARKNDMQAPPTPGA 250
G TLAGL+++R D P + A
Sbjct 241 TVGDATLAGLRISRSLDDNPPGSASA 266
>gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
Length=286
Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 149/210 (71%), Positives = 176/210 (84%), Gaps = 2/210 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+YP DV ARLE DA+E+I RYPD RSALLPLLHLVQ E+ ++T G++FCAD LGLT AE
Sbjct 21 AYPDDVRARLETDAREVIARYPDSRSALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAE 80
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
V+AVA+FYTMYRRRP+G+Y VGVCTNTLCAVMGGDAIF+ L+EHLGVG+ ETT DG VTL
Sbjct 81 VTAVATFYTMYRRRPSGDYQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTL 140
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRI 210
+HIECNAACDYAPVVMVNWEFFDNQTPESA+ +VD LR+ P APTRGAPLC F++T+RI
Sbjct 141 EHIECNAACDYAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRGAPLCTFKETARI 200
Query 211 LAGLPDQR--PDEGQGGPGAPTLAGLQVAR 238
LAG PD+R E G G +L GL++A+
Sbjct 201 LAGFPDEREGATEATGSAGPASLVGLKLAK 230
>gi|345001411|ref|YP_004804265.1| NADH-quinone oxidoreductase subunit E [Streptomyces sp. SirexAA-E]
gi|344317037|gb|AEN11725.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. SirexAA-E]
Length=285
Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 155/225 (69%), Positives = 181/225 (81%), Gaps = 6/225 (2%)
Query 20 PNQFVVEGAPR----SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPA 75
PNQ V G P+ +YP +V ARLE DAKE+I RYP RSALLPLLHLVQ E+ Y++
Sbjct 4 PNQEVSLGMPQLPAPAYPAEVRARLEADAKEVIARYPGSRSALLPLLHLVQSEEGYVSRT 63
Query 76 GLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHL 135
G+ FCA+ LGLT AEV+AVA+FYTMYRRRP+G+Y VGVCTNTLCAVMGGDAIFDRLK+HL
Sbjct 64 GMAFCAELLGLTTAEVTAVATFYTMYRRRPSGDYQVGVCTNTLCAVMGGDAIFDRLKDHL 123
Query 136 GVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAP 195
GVG+DETT DG VTL+HIECNAACD+APVVMVNWEFFDNQTPESA LVD L + P
Sbjct 124 GVGNDETTEDGKVTLEHIECNAACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEP 183
Query 196 TRGAPLCGFRQTSRILAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
TRGAPLC +++T+RILAG PD RP E GG GA +L GL++A+
Sbjct 184 TRGAPLCTYKETARILAGFPDPRPGAVEATGGAGAASLIGLKLAK 228
>gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes
DSM 40736]
gi|302471048|gb|EFL34141.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes
DSM 40736]
Length=303
Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/216 (69%), Positives = 175/216 (82%), Gaps = 2/216 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+YP DV ARLE DA+EII RYPD RSALLPLLHLVQ E+ ++T G+RFCA+ LGLT AE
Sbjct 21 AYPDDVRARLETDAREIIARYPDSRSALLPLLHLVQAEEGHVTRTGMRFCAEMLGLTTAE 80
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
V+AVA+FYTMYRRRP+G+Y VGVCTNTLCAVMGGDAIF+ L+EHLGVG+ ETT DG VTL
Sbjct 81 VTAVATFYTMYRRRPSGDYQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTL 140
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRI 210
+HIECNAACD+APVVMVNWEFFDNQTP SAR LVD LR+ P PTRGAPLC F++T+R+
Sbjct 141 EHIECNAACDFAPVVMVNWEFFDNQTPSSARRLVDDLRAGRPVTPTRGAPLCTFKETARV 200
Query 211 LAGLPDQRPD--EGQGGPGAPTLAGLQVARKNDMQA 244
LAG PD+R E G G +L GL++A+ A
Sbjct 201 LAGFPDERDGAVESGGSAGPASLVGLKLAKGEGASA 236
>gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
gi|197711002|gb|EDY55036.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
Length=293
Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/210 (71%), Positives = 174/210 (83%), Gaps = 2/210 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+YP DV ARLE DA+EII RYPD RSALLPLLHLVQ E+ ++T G+RFCAD L LT AE
Sbjct 21 AYPDDVRARLETDAREIIARYPDSRSALLPLLHLVQAEEGHVTRTGMRFCADVLELTTAE 80
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
V+AVA+FYTMYRR+P+G+Y VGVCTNTLCAVMGGDAIF L+EHLGVG+ ETT DG VTL
Sbjct 81 VTAVATFYTMYRRKPSGDYQVGVCTNTLCAVMGGDAIFTELQEHLGVGNGETTDDGKVTL 140
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRI 210
+HIECNAACD+APVVMVNWEFFDNQTP +A+ LVD LR+ P PTRGAPLC F++T+RI
Sbjct 141 EHIECNAACDFAPVVMVNWEFFDNQTPATAKRLVDDLRAGRPVEPTRGAPLCTFKETARI 200
Query 211 LAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
LAG PD+RP E GG G +L GL++AR
Sbjct 201 LAGFPDERPGAVEASGGAGPASLVGLRLAR 230
>gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
Length=245
Score = 310 bits (795), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 149/219 (69%), Positives = 179/219 (82%), Gaps = 5/219 (2%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
+P DV RLE DAKEIIGRYPD RSALLPLLHL Q E+ +++ G+RFCA+ LGLT AEV
Sbjct 16 FPADVRERLEADAKEIIGRYPDSRSALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTTAEV 75
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FYTMYRR+P+G+Y VGVCTNTLCAVMGGDAIFD LK+HLGVG++ETT+DG VTL+
Sbjct 76 TAVATFYTMYRRKPSGDYQVGVCTNTLCAVMGGDAIFDELKQHLGVGNNETTADGKVTLE 135
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACDYAPVVMVNWEFFDNQTP+SA+ LVD L + P PTRGAPLC +++T+RIL
Sbjct 136 HIECNAACDYAPVVMVNWEFFDNQTPQSAKALVDDLLAGRPVEPTRGAPLCTYKETARIL 195
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVARKNDMQAPPTP 248
AG PD+R + GG G +L GL++AR + P TP
Sbjct 196 AGFPDEREGAVQASGGAGPASLIGLRIARG---ETPHTP 231
>gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
gi|302476721|gb|EFL39814.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
Length=286
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/210 (70%), Positives = 174/210 (83%), Gaps = 2/210 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+YP DV ARLE DA+E+I RYPD RSALLPLLHLVQ E+ ++T G+RFCAD LGLT AE
Sbjct 21 AYPDDVRARLETDAREVIARYPDSRSALLPLLHLVQSEEGHVTRTGMRFCADVLGLTTAE 80
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
V+AVA+FY+MYRRRP+G+Y VGVCTNTLCAVMGGDAIF+ L+EHLGVG+ TT DG VTL
Sbjct 81 VTAVATFYSMYRRRPSGDYQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGGTTDDGKVTL 140
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRI 210
+HIECNAACD+APVVMVNWEFFDNQTPESA+ +VD LR+ P APTRGAPLC F++T+RI
Sbjct 141 EHIECNAACDFAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRGAPLCTFKETARI 200
Query 211 LAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
LAG PD R E G G +L GL++A+
Sbjct 201 LAGFPDAREGAVEATGSAGPASLVGLKLAK 230
>gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductase subunit E [Kitasatospora
setae KM-6054]
Length=246
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/221 (68%), Positives = 177/221 (81%), Gaps = 4/221 (1%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YPP+V ARL DA+E+I RYP RSALLPLLHLVQ ED +TP G+RFCA+QL LT AEV
Sbjct 16 YPPEVEARLAADARELISRYPQSRSALLPLLHLVQAEDGCVTPTGIRFCAEQLELTTAEV 75
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FYTMYRRRP GEY VGVCTNTLCAV+GGD IFD L EHLG+ ++ TT DG V+++
Sbjct 76 TAVATFYTMYRRRPAGEYHVGVCTNTLCAVLGGDQIFDELSEHLGIANNRTTEDGSVSIE 135
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
IECNAACDYAPVVMVNWEFFDNQTPESA+ELVD LR+ PTRGA LC F+++SRIL
Sbjct 136 RIECNAACDYAPVVMVNWEFFDNQTPESAKELVDRLRAGQEVRPTRGAKLCSFKESSRIL 195
Query 212 AGLPDQRP--DEGQGGPGAPTLAGLQVARKNDMQAPPTPGA 250
AG D+RP ++ G GAP+LAGL++A+ + P TPGA
Sbjct 196 AGFADERPGANDESGAGGAPSLAGLRLAKGEAL--PGTPGA 234
>gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
gi|194341343|gb|EDX22309.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
Length=279
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/209 (70%), Positives = 175/209 (84%), Gaps = 2/209 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
+P +V ARLE DA+E+I RYPD RSALLPLLHL Q E+ Y++ G+RFCA+ LGLT AEV
Sbjct 47 FPAEVRARLEADAREVIARYPDSRSALLPLLHLTQSEEGYVSRTGIRFCAEVLGLTTAEV 106
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FYTMYRR P+G+Y VGVCTNTLCAVMGGDAIF+ LKEHLGVG++ETT DG VTL+
Sbjct 107 TAVATFYTMYRRGPSGDYQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTPDGKVTLE 166
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACDYAPVVMVNWEFFDNQTP+SA+ +VD L + P APTRGAPLC +++T+RIL
Sbjct 167 HIECNAACDYAPVVMVNWEFFDNQTPQSAKAMVDDLLAGRPVAPTRGAPLCTYKETARIL 226
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
AG PD+RP E GG G +L GL++AR
Sbjct 227 AGFPDERPGAVEASGGAGPASLIGLRIAR 255
>gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2
155]
gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis
str. MC2 155]
Length=245
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/240 (66%), Positives = 186/240 (78%), Gaps = 5/240 (2%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
VF+ LG PDE + P +YP DV L DA++II RYPD RSALLPLLHLVQ +
Sbjct 4 VFLELGQRPDEAGPPI--SGPATYPDDVTESLRADAEQIIARYPDARSALLPLLHLVQAQ 61
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
D YLTPAG+ FCA QLGLT AEV+AVA+FY+MYRR PTG+YLVGVCTNTLCA+MGGDAI
Sbjct 62 DGYLTPAGIGFCAAQLGLTEAEVTAVATFYSMYRRTPTGDYLVGVCTNTLCAIMGGDAIL 121
Query 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
+ L++HLGV +TT DG VTL+H+ECNAACDYAPVVMVNWEF+DNQTP SAR+LVD LR
Sbjct 122 EALEDHLGVHPGQTTPDGRVTLEHVECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLR 181
Query 189 SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPPTP 248
S +P PTRG+ LC FR+T+R LAGL D P+ G PGA TLAGL++AR+ M AP P
Sbjct 182 SGSPPPPTRGS-LCTFRETARTLAGLTD--PNAPGGAPGAATLAGLRLARERGMTAPTPP 238
>gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase subunit E [Xylanimonas cellulosilytica
DSM 15894]
gi|269303962|gb|ACZ29512.1| NADH-quinone oxidoreductase, E subunit [Xylanimonas cellulosilytica
DSM 15894]
Length=302
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 146/217 (68%), Positives = 173/217 (80%), Gaps = 2/217 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+Y +VL L+ DA+ I+ RYPD RS LLP+LHLVQ D +++P G+RFCA+QLGLT AE
Sbjct 2 TYDAEVLTSLKSDAEAIVARYPDPRSGLLPMLHLVQSIDGFVSPDGIRFCAEQLGLTPAE 61
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
VSAVA+FYT Y+R P G Y VGVCTNTLCA+MGGDAIFD L EHLGVGHDETT DG +TL
Sbjct 62 VSAVATFYTQYKRHPNGTYTVGVCTNTLCAIMGGDAIFDELSEHLGVGHDETTEDGAITL 121
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGA-PLCGFRQTSR 209
+ +ECNAACDYAPV+MVNWEFFDNQTPESA + D LR+ P PTRGA +C F+Q SR
Sbjct 122 ERVECNAACDYAPVMMVNWEFFDNQTPESAAAVADDLRAGKPVRPTRGADSVCTFKQMSR 181
Query 210 ILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPP 246
+LAG PD R DEG G PG P+LAGL++AR+ND APP
Sbjct 182 VLAGFPDGRADEG-GAPGEPSLAGLRLARENDWTAPP 217
>gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074]
gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074]
Length=291
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/225 (67%), Positives = 179/225 (80%), Gaps = 6/225 (2%)
Query 20 PNQFVVEGAPR----SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPA 75
P+ V G P+ +YP + ARL+ DA+ II RYPD RSALLP+LHLVQ E+ Y+T
Sbjct 6 PSPSVALGMPQLPAPAYPAETHARLKADAEAIIARYPDSRSALLPMLHLVQSEEGYVTRT 65
Query 76 GLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHL 135
G+ FCA+ LGLT AEV+AVA+FYTMYRR+P+G+Y VGVCTNTLCAVMGGDAIFD LKEHL
Sbjct 66 GMAFCAELLGLTTAEVTAVATFYTMYRRKPSGDYQVGVCTNTLCAVMGGDAIFDELKEHL 125
Query 136 GVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAP 195
GVG+DETT DG +TL+HIECNAACDYAPVVMVNWEFFDNQTP+SA+ LVD LR P
Sbjct 126 GVGNDETTEDGKITLEHIECNAACDYAPVVMVNWEFFDNQTPDSAKRLVDDLREGRTVEP 185
Query 196 TRGAPLCGFRQTSRILAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
TRGAPLC +++T+RILAG PD+RP E GG G +L GL++A+
Sbjct 186 TRGAPLCTYKETARILAGFPDERPGAVEATGGAGPASLIGLKLAK 230
>gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
Length=253
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 156/239 (66%), Positives = 181/239 (76%), Gaps = 6/239 (2%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
VF+ LG PDEP + P +YP +V RL DA IIGRYP RSALLPLLHLVQ E
Sbjct 3 VFLELGQRPDEPGPPI--HGPTAYPAEVTERLAADAATIIGRYPQSRSALLPLLHLVQAE 60
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
D YLTPAG+ FCA QLGLT AEV+AVA+FY+MYRR PTGEYLVGVCTNTLCAVMGGDAI
Sbjct 61 DGYLTPAGIAFCAGQLGLTHAEVTAVATFYSMYRREPTGEYLVGVCTNTLCAVMGGDAIL 120
Query 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
+ L+ HL + +TT+DG +TL+H+ECNAACDYAPVVMVNW+FFDNQTP S R+LVDSLR
Sbjct 121 ESLESHLDIAPGQTTADGTITLEHVECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLR 180
Query 189 SDTPKAPTRGAPLCGFRQTSRILAGL--PDQRPDEGQGGPGAPTLAGLQVARKNDMQAP 245
S P+R LC FR+T+RILAGL P PD G+ GA TLAGL+VA++ M AP
Sbjct 181 SGEKPTPSRSGALCTFRETARILAGLSNPGDAPDAGR--VGAATLAGLRVAQERAMAAP 237
>gi|229821705|ref|YP_002883231.1| NADH dehydrogenase subunit E [Beutenbergia cavernae DSM 12333]
gi|229567618|gb|ACQ81469.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae
DSM 12333]
Length=283
Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/227 (67%), Positives = 175/227 (78%), Gaps = 2/227 (0%)
Query 25 VEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQL 84
+ G R+Y PDV RL DA I+ RYP++RSALLPLLHLVQ EDSY++PAG+ CAD L
Sbjct 1 MSGHARTYAPDVEERLRADAAVILERYPEQRSALLPLLHLVQAEDSYVSPAGIALCADLL 60
Query 85 GLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTS 144
GLT AEVSAVA+FYT Y+RRP G Y VGVCTNTLCAVMGGD IFDR+ E LGVGHDETT
Sbjct 61 GLTNAEVSAVATFYTQYKRRPNGRYTVGVCTNTLCAVMGGDEIFDRVSERLGVGHDETTQ 120
Query 145 DGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAP-LCG 203
DG +TL+ IECNAACDYAPV+MVNWEFFDNQTP SA +LV++L +D P PTRGA +
Sbjct 121 DGAITLERIECNAACDYAPVLMVNWEFFDNQTPTSAVDLVEALAADQPVTPTRGAAQVQD 180
Query 204 FRQTSRILAGLPDQRPDEGQGGPGAPTLAGLQVARKNDMQAPPTPGA 250
FR TSR+LAG D R DEG G G +L GL++AR++ AP PGA
Sbjct 181 FRATSRVLAGFEDGRADEGPGA-GEASLVGLRIAREHGWSAPEYPGA 226
>gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
M045]
gi|329304471|gb|EGG48349.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
M045]
Length=298
Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 148/216 (69%), Positives = 174/216 (81%), Gaps = 3/216 (1%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YP DV ARLE DA+EII RYPD RSALLP+LHLVQ E+ Y+T G+RFCA+ LGLT AEV
Sbjct 21 YPDDVRARLERDAREIIARYPDSRSALLPMLHLVQSEEGYVTRTGMRFCAELLGLTTAEV 80
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FY+MYRRRP+G+Y VGVCTNTLCAVMGGDAI+ L+EHLGVG+ ETT DG VTL+
Sbjct 81 TAVATFYSMYRRRPSGDYQVGVCTNTLCAVMGGDAIYSALQEHLGVGNGETTDDGKVTLE 140
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACD+APVVMVNWEFFDNQT ESA+ LVD LR +PTRGAPLC F++T+RIL
Sbjct 141 HIECNAACDFAPVVMVNWEFFDNQTVESAKRLVDELREGAEVSPTRGAPLCTFKETARIL 200
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVARKNDMQAP 245
AG PD+R GG G +L GL++A K + AP
Sbjct 201 AGFPDEREGAVSASGGAGHASLTGLRLA-KGETAAP 235
>gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE [Streptomyces scabiei 87.22]
gi|260647782|emb|CBG70887.1| NuoE, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
Length=287
Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/209 (69%), Positives = 173/209 (83%), Gaps = 2/209 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
+P DV ARLE DA E++ RYPD RSALLPLLHL+Q E+ ++T G+RFCAD LGLT AEV
Sbjct 20 FPDDVRARLERDAAEVVARYPDSRSALLPLLHLMQAEEGHVTRTGVRFCADVLGLTTAEV 79
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FY+MYRRRP+G+Y VGVCTNTLCAVMGGDAIF+ L++HLGVG+ ETT DG VTL+
Sbjct 80 TAVATFYSMYRRRPSGDYQVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGKVTLE 139
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACD+APVVMVNWEFFDNQT +SA+ LVD LR APTRGAPLC F++T+RIL
Sbjct 140 HIECNAACDFAPVVMVNWEFFDNQTVDSAKRLVDDLRDGAEVAPTRGAPLCTFKETARIL 199
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
AG PD+RP E GG G +L GL++A+
Sbjct 200 AGFPDERPGAVEASGGAGPASLVGLRLAK 228
>gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777368|ref|ZP_08236633.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
XylebKG-1]
gi|178465289|dbj|BAG19809.1| putative NADH dehydrogenase chain E [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657701|gb|EGE42547.1| NADH-quinone oxidoreductase, E subunit [Streptomyces griseus
XylebKG-1]
Length=285
Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 143/209 (69%), Positives = 171/209 (82%), Gaps = 2/209 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YP +V ARL+ DAKE++ RYP RSALLPLLHLVQ E+ Y++ G+ FCA+ L LT AEV
Sbjct 20 YPAEVRARLDADAKEVLARYPGSRSALLPLLHLVQSEEGYVSRTGMAFCAETLDLTTAEV 79
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FY+MYRRRP+G+Y VGVCTNTLCAVMGGDAIFD LKEHLGVG++ETT DG VTL+
Sbjct 80 TAVATFYSMYRRRPSGDYQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLE 139
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACD+APVVMVNWEFFDNQTPESA LVD L + PTRGAPLC +++T+RIL
Sbjct 140 HIECNAACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRGAPLCSYKETARIL 199
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
AG PD+RP E GG G +L GL++A+
Sbjct 200 AGFPDERPGAVEATGGAGPASLIGLKLAK 228
>gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chain E [Streptomyces venezuelae
ATCC 10712]
Length=246
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 140/210 (67%), Positives = 174/210 (83%), Gaps = 2/210 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+YP +V ARL DA+ I+ RYPD RSALLP+LHLVQ E+ ++T G+ FCA+ LGLT AE
Sbjct 16 AYPAEVHARLTEDARAIVDRYPDSRSALLPMLHLVQSEEGHVTRTGMAFCAETLGLTTAE 75
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
V+AVA+FY+MYRR+P+G+Y VGVCTNTLCAVMGGDAIF+ LKEHL VG++ETT DG +TL
Sbjct 76 VTAVATFYSMYRRKPSGDYQVGVCTNTLCAVMGGDAIFEELKEHLAVGNNETTPDGKITL 135
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRI 210
+HIECNAACD+APVVMVNWEFFDNQTPESA+++VD LR+ PTRGAPLC F++T+RI
Sbjct 136 EHIECNAACDFAPVVMVNWEFFDNQTPESAKKMVDDLRAGRTVEPTRGAPLCTFKETARI 195
Query 211 LAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
LAG PD+RP E GG G +L GL++A+
Sbjct 196 LAGFPDERPGAVEATGGAGPASLVGLRLAK 225
>gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Streptomyces avermitilis MA-4680]
gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase I chain E (complex I) [Streptomyces
avermitilis MA-4680]
Length=287
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 150/224 (67%), Positives = 174/224 (78%), Gaps = 6/224 (2%)
Query 21 NQFVVEGAPR----SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAG 76
Q V G PR YP DV ARLE D +EII RYPD RSALLPLLHLVQ E+ ++T G
Sbjct 7 EQGVSLGMPRLPAPDYPDDVRARLERDGREIIARYPDSRSALLPLLHLVQAEEGHVTRTG 66
Query 77 LRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLG 136
++FCAD LGLT AEV+AVA+FYTMYRRRP+G+Y VGVCTNTLCAVMGGDAIF L++HLG
Sbjct 67 MQFCADILGLTTAEVTAVATFYTMYRRRPSGDYQVGVCTNTLCAVMGGDAIFSALQDHLG 126
Query 137 VGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPT 196
VG+ ETT DG VTL+HIECNAACD+APVVMVNWEFFDNQT SA+ LVD LR+ P PT
Sbjct 127 VGNGETTDDGKVTLEHIECNAACDFAPVVMVNWEFFDNQTVASAKRLVDDLRAGAPVEPT 186
Query 197 RGAPLCGFRQTSRILAGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
RGAPLC F+ T+RILAG PD+R E G G +L GL++A+
Sbjct 187 RGAPLCTFKDTARILAGFPDERDGAVEASGSAGPASLTGLRLAK 230
>gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 11379]
gi|291446951|ref|ZP_06586341.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
gi|291349898|gb|EFE76802.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
Length=279
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 142/209 (68%), Positives = 172/209 (83%), Gaps = 2/209 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YP +V ARL+ DAKE++ RYP RSALLPLLHLVQ E+ Y++ G+ FCA+ L LT AEV
Sbjct 9 YPAEVRARLDADAKEVLARYPGSRSALLPLLHLVQSEEGYVSRTGIAFCAETLDLTTAEV 68
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AV++FY+MYRRRP+G+Y VGVCTNTLCAVMGGDAIFD LKEHLGVG++ETT DG VTL+
Sbjct 69 TAVSTFYSMYRRRPSGDYQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLE 128
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACD+APVVMVNWEFFDNQTPESA +LVD L + PTRGAPLC +++T+RIL
Sbjct 129 HIECNAACDFAPVVMVNWEFFDNQTPESATQLVDDLIAGRTVEPTRGAPLCSYKETARIL 188
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
AG PD+RP E GG G +L GL++A+
Sbjct 189 AGFPDERPGAVEATGGAGPASLIGLKLAK 217
>gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
Length=287
Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/238 (65%), Positives = 179/238 (76%), Gaps = 5/238 (2%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
+F+ LG PDEP + P +YP V RL DA II RYP RSALLPLLHLVQ +
Sbjct 1 MFLELGQRPDEPGPPI--HGPATYPAAVHERLTADAATIIARYPQTRSALLPLLHLVQAQ 58
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
D LTPAG+ FCAD+LGLT AEV+AVA+FY+MYRR PTGEYLVGVCTNTLCAVMGGDAI
Sbjct 59 DGCLTPAGIAFCADRLGLTDAEVTAVATFYSMYRRTPTGEYLVGVCTNTLCAVMGGDAIL 118
Query 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
+ L++HL + +TT+DG +TL+H+ECNAACD+APVVMVNW+FFDNQTP SARELVD LR
Sbjct 119 ESLEQHLDIAPGQTTADGRITLEHVECNAACDFAPVVMVNWDFFDNQTPASARELVDGLR 178
Query 189 SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGP-GAPTLAGLQVARKNDMQAP 245
S AP+RG LC FR+TSRILAGL PD G G TLAGL+ AR++ M AP
Sbjct 179 SGQTPAPSRGGSLCTFRETSRILAGL--DGPDSATAGTVGEATLAGLRFAREHRMAAP 234
>gi|345008472|ref|YP_004810826.1| NADH-quinone oxidoreductase subunit E [Streptomyces violaceusniger
Tu 4113]
gi|344034821|gb|AEM80546.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
Tu 4113]
Length=276
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/209 (69%), Positives = 171/209 (82%), Gaps = 2/209 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YP +V ARLE DA+E+I RYPD RSALLPLLHLVQ E+ ++T G+RFCA+ LGLT AEV
Sbjct 16 YPAEVRARLEADAREVIARYPDSRSALLPLLHLVQSEEGHVTRTGMRFCAEVLGLTTAEV 75
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FYTMYRR+P+G+Y VGVCTNTLCAVMGGDAIF+ L+ HLGVG+ ETT DG VTL+
Sbjct 76 TAVATFYTMYRRKPSGDYQVGVCTNTLCAVMGGDAIFEELQSHLGVGNGETTEDGKVTLE 135
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACDYAPVVMVNWEFFDNQT ESA+ LVD LR+ PTRGAPLC +++T+RIL
Sbjct 136 HIECNAACDYAPVVMVNWEFFDNQTIESAKGLVDDLRAGRTVEPTRGAPLCTYQETARIL 195
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
AG PD RP E G G +L GL++A+
Sbjct 196 AGFPDARPGAVEAGGSAGPASLVGLRLAK 224
>gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Streptomyces bingchenggensis BCW-1]
Length=255
Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/209 (68%), Positives = 170/209 (82%), Gaps = 2/209 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YP +V ARLE DA+E+I RYPD RSALLPLLHLVQ E+ ++T G+RFCA+ LGLT AEV
Sbjct 16 YPAEVRARLEADAEEVIARYPDSRSALLPLLHLVQSEEGHVTRTGVRFCAEVLGLTTAEV 75
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FYTMYRR+P+G+Y VGVCTNTLCAVMGGDAIF+ L+ HLGVG+ ETT DG +TL+
Sbjct 76 TAVATFYTMYRRKPSGDYQVGVCTNTLCAVMGGDAIFEALQRHLGVGNGETTEDGKITLE 135
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACDYAPVVMVNWEFFDNQT +SA +VD LR+ PTRGAPLC F++T+RIL
Sbjct 136 HIECNAACDYAPVVMVNWEFFDNQTVDSAERMVDDLRAGRTVEPTRGAPLCTFKETARIL 195
Query 212 AGLPDQRPD--EGQGGPGAPTLAGLQVAR 238
AG PD RP E G G +L GL++A+
Sbjct 196 AGFPDARPGAVEASGSAGPASLVGLRLAK 224
>gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
Length=286
Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/238 (64%), Positives = 179/238 (76%), Gaps = 5/238 (2%)
Query 9 VFIRLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGE 68
+F+ LG PDEP + P +YP V RL DA+ II RYP RSALLPLLHLVQ +
Sbjct 1 MFLELGQRPDEPGPPI--HGPATYPAAVHERLTADAETIIARYPQTRSALLPLLHLVQAQ 58
Query 69 DSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIF 128
D LTPAG+ FCA +LGLT AEV+AVA+FY+MYRR PTGEYLVGVCTNTLCAVMGGDAI
Sbjct 59 DGCLTPAGIAFCAHRLGLTDAEVTAVATFYSMYRRTPTGEYLVGVCTNTLCAVMGGDAIL 118
Query 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188
+ L++HL + +TT+DG +TL+H+ECNAACD+APVVMVNW+FFDNQTP SARELVD LR
Sbjct 119 ESLEQHLDIAPGQTTADGRITLEHVECNAACDFAPVVMVNWDFFDNQTPASARELVDGLR 178
Query 189 SDTPKAPTRGAPLCGFRQTSRILAGLPDQRPDEGQGGP-GAPTLAGLQVARKNDMQAP 245
S AP+RG LC FR+TSRILAGL PD G G TLAGL+ AR++ M AP
Sbjct 179 SGQTPAPSRGGSLCTFRETSRILAGL--DGPDSATAGTVGEATLAGLRFAREHRMAAP 234
>gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces pristinaespiralis
ATCC 25486]
gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces pristinaespiralis
ATCC 25486]
Length=276
Score = 298 bits (763), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 136/187 (73%), Positives = 162/187 (87%), Gaps = 0/187 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YP +V ARLE DAKEII RYP RSALLPLLHLVQ E+ +++ G+RFCA+ L LT AEV
Sbjct 16 YPAEVRARLEADAKEIIARYPGSRSALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEV 75
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FY+MYRR+P+GEY VGVCTNTLCAVMGGDAIF+ LKEHLGVG++ETT DG +TL+
Sbjct 76 TAVATFYSMYRRKPSGEYQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLE 135
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACD+APVVMVNWEFFDNQTP+SA++LVD LR+ PTRGAPLC +++T+RIL
Sbjct 136 HIECNAACDFAPVVMVNWEFFDNQTPQSAKQLVDDLRAGEQVVPTRGAPLCTYKETARIL 195
Query 212 AGLPDQR 218
AG PDQR
Sbjct 196 AGFPDQR 202
>gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
gi|197697231|gb|EDY44164.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
Length=286
Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/187 (75%), Positives = 159/187 (86%), Gaps = 0/187 (0%)
Query 32 YPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEV 91
YPP+V RLE DA EII RYP RSALLPLLHLVQ E+ ++T G+ FCA QLGLT AEV
Sbjct 16 YPPEVRTRLEADAAEIISRYPGARSALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEV 75
Query 92 SAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQ 151
+AVA+FYTMYRR+P+G+Y VGVCTNTLCAVMGGDAIF+ L+EHLGVG+DETT DG VTL+
Sbjct 76 NAVATFYTMYRRKPSGDYQVGVCTNTLCAVMGGDAIFETLQEHLGVGNDETTEDGKVTLE 135
Query 152 HIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRIL 211
HIECNAACD+APVVMVNWEFFDNQTPESA LVD LR+ PTRGAPLC F++T+RIL
Sbjct 136 HIECNAACDFAPVVMVNWEFFDNQTPESAVRLVDELRAGREVEPTRGAPLCTFKETARIL 195
Query 212 AGLPDQR 218
AG PDQR
Sbjct 196 AGFPDQR 202
>gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Streptomyces coelicolor A3(2)]
gi|289769830|ref|ZP_06529208.1| NuoE [Streptomyces lividans TK24]
gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
gi|289700029|gb|EFD67458.1| NuoE [Streptomyces lividans TK24]
Length=290
Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 138/188 (74%), Positives = 161/188 (86%), Gaps = 0/188 (0%)
Query 31 SYPPDVLARLEVDAKEIIGRYPDRRSALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAE 90
+YP DV ARLE DA+EII RYPD RSALLPLLHLVQ E+ ++T G++FCAD L LT AE
Sbjct 21 AYPDDVRARLETDAREIIARYPDSRSALLPLLHLVQSEEGHVTRTGMQFCADVLDLTTAE 80
Query 91 VSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTL 150
V+AVA+FYTMYRRRP+G+Y VGVCTNTLCAVMGGDAIF+ L++HLGVG+ ETT DG VTL
Sbjct 81 VTAVATFYTMYRRRPSGDYQVGVCTNTLCAVMGGDAIFESLQDHLGVGNGETTEDGKVTL 140
Query 151 QHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSDTPKAPTRGAPLCGFRQTSRI 210
+HIECNAACD+APVVMVNWEFFDNQTP S + LVD LR+ P PTRGAPLC F++T+RI
Sbjct 141 EHIECNAACDFAPVVMVNWEFFDNQTPASVKALVDDLRAGRPVTPTRGAPLCTFKETARI 200
Query 211 LAGLPDQR 218
LAG PD+R
Sbjct 201 LAGFPDER 208
Lambda K H
0.318 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 365242488240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40