BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3150 Length=445 Score E Sequences producing significant alignments: (Bits) Value gi|15610286|ref|NP_217666.1| NADH dehydrogenase I chain F [Mycob... 910 0.0 gi|298526624|ref|ZP_07014033.1| NADH-quinone oxidoreductase subu... 909 0.0 gi|167970179|ref|ZP_02552456.1| NADH dehydrogenase I chain F nuo... 861 0.0 gi|308232349|ref|ZP_07664059.1| NADH dehydrogenase subunit I F n... 860 0.0 gi|308374786|ref|ZP_07667861.1| NADH dehydrogenase subunit I F n... 858 0.0 gi|183981493|ref|YP_001849784.1| NADH dehydrogenase I (chain F) ... 832 0.0 gi|296169187|ref|ZP_06850840.1| NADH-quinone oxidoreductase subu... 830 0.0 gi|118617951|ref|YP_906283.1| NADH dehydrogenase I (chain F) Nuo... 828 0.0 gi|41409304|ref|NP_962140.1| hypothetical protein MAP3206 [Mycob... 822 0.0 gi|118462706|ref|YP_883190.1| NADH-quinone oxidoreductase, F sub... 822 0.0 gi|254821139|ref|ZP_05226140.1| NADH-quinone oxidoreductase, F s... 822 0.0 gi|336459341|gb|EGO38284.1| NADH-quinone oxidoreductase, F subun... 820 0.0 gi|342861058|ref|ZP_08717707.1| NADH-quinone oxidoreductase, F s... 820 0.0 gi|240169665|ref|ZP_04748324.1| NADH dehydrogenase I (chain F) N... 814 0.0 gi|289751828|ref|ZP_06511206.1| NADH dehydrogenase subunit I F n... 776 0.0 gi|333991504|ref|YP_004524118.1| NADH dehydrogenase I (chain F) ... 744 0.0 gi|108798545|ref|YP_638742.1| NADH-quinone oxidoreductase, F sub... 729 0.0 gi|126434143|ref|YP_001069834.1| NADH-quinone oxidoreductase, F ... 729 0.0 gi|315445434|ref|YP_004078313.1| NADH-quinone oxidoreductase, F ... 710 0.0 gi|333922083|ref|YP_004495664.1| NADH-quinone oxidoreductase sub... 710 0.0 gi|111022877|ref|YP_705849.1| NADH dehydrogenase subunit F [Rhod... 710 0.0 gi|118471561|ref|YP_886419.1| NADH-quinone oxidoreductase, F sub... 709 0.0 gi|145225065|ref|YP_001135743.1| NADH-quinone oxidoreductase, F ... 709 0.0 gi|120402878|ref|YP_952707.1| NADH-quinone oxidoreductase, F sub... 708 0.0 gi|226365385|ref|YP_002783168.1| NADH-quinone oxidoreductase cha... 703 0.0 gi|320009199|gb|ADW04049.1| NADH-quinone oxidoreductase, F subun... 701 0.0 gi|345001412|ref|YP_004804266.1| NADH-quinone oxidoreductase sub... 699 0.0 gi|239989935|ref|ZP_04710599.1| putative NADH dehydrogenase chai... 697 0.0 gi|326777367|ref|ZP_08236632.1| NADH-quinone oxidoreductase, F s... 695 0.0 gi|182436772|ref|YP_001824491.1| putative NADH dehydrogenase cha... 695 0.0 gi|328884317|emb|CCA57556.1| NADH-ubiquinone oxidoreductase chai... 691 0.0 gi|302553431|ref|ZP_07305773.1| NADH oxidoreductase (quinone), F... 690 0.0 gi|297201628|ref|ZP_06919025.1| NADH oxidoreductase (quinone), F... 690 0.0 gi|21222950|ref|NP_628729.1| NADH dehydrogenase subunit NuoF [St... 689 0.0 gi|54024631|ref|YP_118873.1| putative NADH dehydrogenase I chain... 689 0.0 gi|337767474|emb|CCB76185.1| NADH-quinone oxidoreductase subunit... 689 0.0 gi|294814399|ref|ZP_06773042.1| NADH-quinone oxidoreductase subu... 689 0.0 gi|254391142|ref|ZP_05006349.1| NADH-quinone oxidoreductase subu... 688 0.0 gi|302536173|ref|ZP_07288515.1| NADH oxidoreductase (quinone), F... 688 0.0 gi|29831385|ref|NP_826019.1| NADH dehydrogenase I chain F [Strep... 688 0.0 gi|329935992|ref|ZP_08285792.1| NADH dehydrogenase subunit NuoF ... 687 0.0 gi|343926371|ref|ZP_08765876.1| NADH-quinone oxidoreductase chai... 686 0.0 gi|229490823|ref|ZP_04384658.1| NADH oxidoreductase, f subunit [... 686 0.0 gi|291437933|ref|ZP_06577323.1| NADH dehydrogenase I chain F [St... 686 0.0 gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase sub... 685 0.0 gi|294630801|ref|ZP_06709361.1| NADH oxidoreductase, F subunit [... 685 0.0 gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) ch... 684 0.0 gi|302559102|ref|ZP_07311444.1| NADH oxidoreductase (quinone), F... 684 0.0 gi|256396787|ref|YP_003118351.1| NADH-quinone oxidoreductase, F ... 683 0.0 gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subu... 682 0.0 >gi|15610286|ref|NP_217666.1| NADH dehydrogenase I chain F [Mycobacterium tuberculosis H37Rv] gi|15842726|ref|NP_337763.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis CDC1551] gi|31794326|ref|NP_856819.1| NADH dehydrogenase I chain F [Mycobacterium bovis AF2122/97] 54 more sequence titles Length=445 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/445 (100%), Positives = 445/445 (100%), Gaps = 0/445 (0%) Query 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR Sbjct 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 Query 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI Sbjct 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 Query 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA Sbjct 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 Query 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR Sbjct 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 Query 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP Sbjct 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 Query 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR Sbjct 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 Query 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY Sbjct 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 Query 421 LAHVEGGGCPFDPRDSMLVANGVDA 445 LAHVEGGGCPFDPRDSMLVANGVDA Sbjct 421 LAHVEGGGCPFDPRDSMLVANGVDA 445 >gi|298526624|ref|ZP_07014033.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis 94_M4241A] gi|298496418|gb|EFI31712.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis 94_M4241A] Length=445 Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/445 (99%), Positives = 445/445 (100%), Gaps = 0/445 (0%) Query 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 MTTQATPLTPVISRHWDDP+SWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR Sbjct 1 MTTQATPLTPVISRHWDDPKSWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 Query 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI Sbjct 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 Query 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA Sbjct 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 Query 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR Sbjct 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 Query 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP Sbjct 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 Query 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR Sbjct 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 Query 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY Sbjct 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 Query 421 LAHVEGGGCPFDPRDSMLVANGVDA 445 LAHVEGGGCPFDPRDSMLVANGVDA Sbjct 421 LAHVEGGGCPFDPRDSMLVANGVDA 445 >gi|167970179|ref|ZP_02552456.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis H37Ra] Length=424 Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%) Query 24 LATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 83 LATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA Sbjct 3 LATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 62 Query 84 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 143 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL Sbjct 63 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 122 Query 144 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 203 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR Sbjct 123 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 182 Query 204 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 263 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG Sbjct 183 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 242 Query 264 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML 323 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML Sbjct 243 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML 302 Query 324 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI 383 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI Sbjct 303 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI 362 Query 384 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV 443 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV Sbjct 363 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV 422 Query 444 DA 445 DA Sbjct 423 DA 424 >gi|308232349|ref|ZP_07664059.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu001] gi|308371245|ref|ZP_07667116.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu003] gi|308372437|ref|ZP_07667377.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu004] gi|308380584|ref|ZP_07490464.2| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu011] gi|308214179|gb|EFO73578.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu001] gi|308329370|gb|EFP18221.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu003] gi|308333199|gb|EFP22050.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu004] gi|308361023|gb|EFP49874.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu011] Length=422 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/422 (99%), Positives = 422/422 (100%), Gaps = 0/422 (0%) Query 24 LATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 83 +ATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA Sbjct 1 MATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 60 Query 84 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 143 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL Sbjct 61 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 120 Query 144 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 203 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR Sbjct 121 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 180 Query 204 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 263 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG Sbjct 181 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 240 Query 264 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML 323 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML Sbjct 241 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML 300 Query 324 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI 383 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI Sbjct 301 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI 360 Query 384 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV 443 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV Sbjct 361 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV 420 Query 444 DA 445 DA Sbjct 421 DA 422 >gi|308374786|ref|ZP_07667861.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu006] gi|308340530|gb|EFP29381.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu006] Length=422 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/422 (99%), Positives = 421/422 (99%), Gaps = 0/422 (0%) Query 24 LATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 83 +ATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA Sbjct 1 MATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 60 Query 84 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 143 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL Sbjct 61 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 120 Query 144 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 203 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR Sbjct 121 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 180 Query 204 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 263 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG Sbjct 181 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 240 Query 264 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML 323 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML Sbjct 241 QYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSML 300 Query 324 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI 383 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI Sbjct 301 GTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDI 360 Query 384 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGV 443 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL HVEGGGCPFDPRDSMLVANGV Sbjct 361 DKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLGHVEGGGCPFDPRDSMLVANGV 420 Query 444 DA 445 DA Sbjct 421 DA 422 >gi|183981493|ref|YP_001849784.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium marinum M] gi|183174819|gb|ACC39929.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium marinum M] Length=448 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/440 (92%), Positives = 419/440 (96%), Gaps = 3/440 (0%) Query 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 MT+QATPLTPVISR+WDDPESWTLATY+RHD GY+AL+KAL M PD VI VKDSGLR Sbjct 1 MTSQATPLTPVISRYWDDPESWTLATYRRHD---GYRALEKALAMGPDAVIGTVKDSGLR 57 Query 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 GRGGAGF+TGTKWSFIPQGD G AAKPHYLVVNADESEPGTCKDIPLMLATPHVL+EGVI Sbjct 58 GRGGAGFSTGTKWSFIPQGDAGPAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVI 117 Query 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 IAAYAIRA HAF+YVRGEV+PVLRRL NAVAEAYAAG LGRNI GSGFDLELVVHAGAGA Sbjct 118 IAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGLLGRNINGSGFDLELVVHAGAGA 177 Query 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIL G+DWFR Sbjct 178 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFR 237 Query 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGG+RAGH+LKFWTPGGSSTP Sbjct 238 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGIRAGHQLKFWTPGGSSTP 297 Query 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 LLTDEHLDVPLDYEGVG GSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR Sbjct 298 LLTDEHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 357 Query 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 EGTFWLDKIY RLETG+G+ EDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHF+DEY Sbjct 358 EGTFWLDKIYARLETGKGTREDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFQDEY 417 Query 421 LAHVEGGGCPFDPRDSMLVA 440 +AHVE GGCPFDPRDSML A Sbjct 418 IAHVEQGGCPFDPRDSMLTA 437 >gi|296169187|ref|ZP_06850840.1| NADH-quinone oxidoreductase subunit F [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896085|gb|EFG75752.1| NADH-quinone oxidoreductase subunit F [Mycobacterium parascrofulaceum ATCC BAA-614] Length=440 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/437 (92%), Positives = 421/437 (97%), Gaps = 3/437 (0%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+QATPLTPVISR WDDPESWTL TY+RHD GYQAL+KAL M PDDVI+ VKDSGLRG Sbjct 3 TSQATPLTPVISRFWDDPESWTLETYRRHD---GYQALKKALAMAPDDVIATVKDSGLRG 59 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF+TGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVL+EGVII Sbjct 60 RGGAGFSTGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVII 119 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 AAYAIRA HAF+YVRGEV+PVLRRL NAVAEAYAAG+LGR+I GSGFDLELVVHAGAGAY Sbjct 120 AAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAY 179 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIL G+DWFRS Sbjct 180 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRS 239 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHV RPGQYEAPLGITLRELL YAGGVRAGHRLKFWTPGGSSTPL Sbjct 240 MGSEKSPGFTLYSLSGHVARPGQYEAPLGITLRELLAYAGGVRAGHRLKFWTPGGSSTPL 299 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAV+RWT FYKHESCGKCTPCRE Sbjct 300 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCRE 359 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GTFWLD+IYERLETG+G++EDIDKLLDISD+ILGKSFCALGDGAASPVMSSIK+FRDEY+ Sbjct 360 GTFWLDQIYERLETGKGTNEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYV 419 Query 422 AHVEGGGCPFDPRDSML 438 AHVE GGCPFDPRDSML Sbjct 420 AHVEDGGCPFDPRDSML 436 >gi|118617951|ref|YP_906283.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium ulcerans Agy99] gi|118570061|gb|ABL04812.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium ulcerans Agy99] Length=448 Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/440 (92%), Positives = 418/440 (95%), Gaps = 3/440 (0%) Query 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 MT+QATPLTPVISR+WDDPESWTLATY+RHD GY+AL+KAL M PD VI VKDSGLR Sbjct 1 MTSQATPLTPVISRYWDDPESWTLATYRRHD---GYRALEKALAMGPDAVIGTVKDSGLR 57 Query 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 GRGGAGF+TGTKWSFIPQGD G AAKPHYLVVNADESEPGTCKDIPLMLATPHVL+EGVI Sbjct 58 GRGGAGFSTGTKWSFIPQGDAGPAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVI 117 Query 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 IAAYAIRA HAF+YVRGEV+PVLRRL NAVAEAYAAG LGRNI GSGFDLELVVHAGAGA Sbjct 118 IAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGLLGRNINGSGFDLELVVHAGAGA 177 Query 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIL G+DWFR Sbjct 178 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFR 237 Query 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGG+RAGH+LKFWTPGGSSTP Sbjct 238 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGIRAGHQLKFWTPGGSSTP 297 Query 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 LLTDEHLDVPLDYEGVG GSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR Sbjct 298 LLTDEHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 357 Query 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 EGTFWLDKIY RLETG+G+ EDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHF++EY Sbjct 358 EGTFWLDKIYARLETGKGTREDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFQNEY 417 Query 421 LAHVEGGGCPFDPRDSMLVA 440 +AH E GGCPFDPRDSML A Sbjct 418 IAHAEQGGCPFDPRDSMLTA 437 >gi|41409304|ref|NP_962140.1| hypothetical protein MAP3206 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398124|gb|AAS05754.1| NuoF [Mycobacterium avium subsp. paratuberculosis K-10] Length=453 Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/442 (91%), Positives = 417/442 (95%), Gaps = 3/442 (0%) Query 4 QATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRG 63 QATPLTPVISR WDDPESWTL TY RH GY A++KAL M PD VI +VKDSGLRGRG Sbjct 15 QATPLTPVISRFWDDPESWTLQTYHRHG---GYTAMKKALAMEPDAVIGMVKDSGLRGRG 71 Query 64 GAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 123 GAGF+TGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA Sbjct 72 GAGFSTGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 131 Query 124 YAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYIC 183 YAIRA+HAF+YVRGEV+PVLRRL NAVAEAYAAG+LGR+I GSGFDLELVVHAGAGAYIC Sbjct 132 YAIRANHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYIC 191 Query 184 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSII G+DWFRSMG Sbjct 192 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMG 251 Query 244 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 303 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT Sbjct 252 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 311 Query 304 DEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGT 363 DEHLDVPLDYEGVG GSMLGTKALEIFDETTCVVRAVRRWT FYKHESCGKCTPCREGT Sbjct 312 DEHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGT 371 Query 364 FWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAH 423 FWLD+IYERLETG+G+ EDIDKLLDISD+ILGKSFCALGDGAASPVMSSIK+FRDEY+AH Sbjct 372 FWLDQIYERLETGKGTAEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAH 431 Query 424 VEGGGCPFDPRDSMLVANGVDA 445 VE G CPFDPRDSML NG D+ Sbjct 432 VENGRCPFDPRDSMLTPNGSDS 453 >gi|118462706|ref|YP_883190.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104] gi|254776460|ref|ZP_05217976.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium subsp. avium ATCC 25291] gi|118163993|gb|ABK64890.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104] Length=453 Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/442 (91%), Positives = 417/442 (95%), Gaps = 3/442 (0%) Query 4 QATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRG 63 QATPLTPVISR WDDPESWTL TY RH GY A++KAL M PD VI +VKDSGLRGRG Sbjct 15 QATPLTPVISRFWDDPESWTLQTYHRHG---GYAAMKKALAMEPDAVIGMVKDSGLRGRG 71 Query 64 GAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 123 GAGF+TGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA Sbjct 72 GAGFSTGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 131 Query 124 YAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYIC 183 YAIRA+HAF+YVRGEV+PVLRRL NAVAEAYAAG+LGR+I GSGFDLELVVHAGAGAYIC Sbjct 132 YAIRANHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYIC 191 Query 184 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSII G+DWFRSMG Sbjct 192 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMG 251 Query 244 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 303 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT Sbjct 252 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 311 Query 304 DEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGT 363 DEHLDVPLDYEGVG GSMLGTKALEIFDETTCVVRAVRRWT FYKHESCGKCTPCREGT Sbjct 312 DEHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGT 371 Query 364 FWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAH 423 FWLD+IYERLETG+G+ EDIDKLLDISD+ILGKSFCALGDGAASPVMSSIK+FRDEY+AH Sbjct 372 FWLDQIYERLETGKGTAEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAH 431 Query 424 VEGGGCPFDPRDSMLVANGVDA 445 VE G CPFDPRDSML NG D+ Sbjct 432 VENGRCPFDPRDSMLTPNGSDS 453 >gi|254821139|ref|ZP_05226140.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium intracellulare ATCC 13950] Length=446 Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/441 (91%), Positives = 420/441 (96%), Gaps = 3/441 (0%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ ATPLTPV+SR WDDPESWTL TY+RH GY+A++KAL M PD VI +VKDSGLRG Sbjct 7 TSGATPLTPVLSRFWDDPESWTLETYRRHG---GYEAMKKALAMEPDAVIGVVKDSGLRG 63 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF+TGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVL+EGVII Sbjct 64 RGGAGFSTGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVII 123 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 AAYAIRA+HAF+YVRGEV+PVLRRL NAVAEAYAAG+LGR+I GSGFDLELVVHAGAGAY Sbjct 124 AAYAIRANHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAY 183 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSII G+DWFRS Sbjct 184 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRS 243 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELL YAGGVRAGHRLKFWTPGGSSTPL Sbjct 244 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLAYAGGVRAGHRLKFWTPGGSSTPL 303 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 LTDEHLDVPLDYEGVG AGSMLGTKALEIFDETTCVVRAV+RWT FYKHESCGKCTPCRE Sbjct 304 LTDEHLDVPLDYEGVGGAGSMLGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCRE 363 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GTFWLDKIYERLE G G+HED+DKLLDISDSILGK+FCALGDGAASPVMSSI++FRDEY+ Sbjct 364 GTFWLDKIYERLEAGTGTHEDLDKLLDISDSILGKAFCALGDGAASPVMSSIQYFRDEYV 423 Query 422 AHVEGGGCPFDPRDSMLVANG 442 AHVEGGGCPFDPRDSML+ NG Sbjct 424 AHVEGGGCPFDPRDSMLIPNG 444 >gi|336459341|gb|EGO38284.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=453 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/442 (91%), Positives = 416/442 (95%), Gaps = 3/442 (0%) Query 4 QATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRG 63 QATPLTPVISR WDDPESWTL TY R GY A++KAL M PD VI +VKDSGLRGRG Sbjct 15 QATPLTPVISRFWDDPESWTLQTYHRRG---GYTAMKKALAMEPDAVIGMVKDSGLRGRG 71 Query 64 GAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 123 GAGF+TGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA Sbjct 72 GAGFSTGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 131 Query 124 YAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYIC 183 YAIRA+HAF+YVRGEV+PVLRRL NAVAEAYAAG+LGR+I GSGFDLELVVHAGAGAYIC Sbjct 132 YAIRANHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYIC 191 Query 184 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSII G+DWFRSMG Sbjct 192 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMG 251 Query 244 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 303 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT Sbjct 252 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 311 Query 304 DEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGT 363 DEHLDVPLDYEGVG GSMLGTKALEIFDETTCVVRAVRRWT FYKHESCGKCTPCREGT Sbjct 312 DEHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGT 371 Query 364 FWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAH 423 FWLD+IYERLETG+G+ EDIDKLLDISD+ILGKSFCALGDGAASPVMSSIK+FRDEY+AH Sbjct 372 FWLDQIYERLETGKGTAEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAH 431 Query 424 VEGGGCPFDPRDSMLVANGVDA 445 VE G CPFDPRDSML NG D+ Sbjct 432 VENGRCPFDPRDSMLTPNGSDS 453 >gi|342861058|ref|ZP_08717707.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium colombiense CECT 3035] gi|342131502|gb|EGT84772.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium colombiense CECT 3035] Length=447 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/444 (91%), Positives = 418/444 (95%), Gaps = 3/444 (0%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+QATPLTPVISR WDDPESWTL TY RH GY+A++KAL M PD VI +VKDSGLRG Sbjct 7 TSQATPLTPVISRFWDDPESWTLDTYHRHG---GYEAMKKALAMEPDAVIGLVKDSGLRG 63 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF+TGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVL+EGVII Sbjct 64 RGGAGFSTGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLLEGVII 123 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 AAYAIRA HAF+YVRGEV+PVLRRL NAVAEAYAAG+LGR+I GSGFDLELVVHAGAGAY Sbjct 124 AAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAY 183 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSII G+DWFRS Sbjct 184 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRS 243 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHV RPGQYEAPLGITLRELL YAGGVRAGHRLKFWTPGGSSTPL Sbjct 244 MGSEKSPGFTLYSLSGHVARPGQYEAPLGITLRELLAYAGGVRAGHRLKFWTPGGSSTPL 303 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 LTDEHLDVPLDYEGVG GSMLGTKALEIFDETTCVVRAVRRWT FYKHESCGKCTPCRE Sbjct 304 LTDEHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCRE 363 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GTFWLD+IYERLETGRG+ EDI KLLDISD+ILGKSFCALGDGAASPVMSSIK+FRDEY+ Sbjct 364 GTFWLDQIYERLETGRGTSEDIGKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYV 423 Query 422 AHVEGGGCPFDPRDSMLVANGVDA 445 AHVEGGGCPFDPRDSML A+G A Sbjct 424 AHVEGGGCPFDPRDSMLTADGGKA 447 >gi|240169665|ref|ZP_04748324.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium kansasii ATCC 12478] Length=443 Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/443 (92%), Positives = 424/443 (96%), Gaps = 3/443 (0%) Query 3 TQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62 + ATPLTPVISR WDDP+SWTL TY+RHD GY+A+ KAL+M PD VI VKDSGLRGR Sbjct 4 SSATPLTPVISRFWDDPKSWTLETYRRHD---GYRAMHKALSMDPDAVIGTVKDSGLRGR 60 Query 63 GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122 GGAGFATGTKWSFIPQGD GAAAKPHYLVVNADESEPGTCKDIPLMLATPHVL+EG+IIA Sbjct 61 GGAGFATGTKWSFIPQGDKGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGIIIA 120 Query 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182 AYAIRAHHAF+YVRGEV+PVLRRL NAVAEAYAAG+LGRNI GSGFDLELVVHAGAGAYI Sbjct 121 AYAIRAHHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRNIAGSGFDLELVVHAGAGAYI 180 Query 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVP+IIL G+DWFRSM Sbjct 181 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPAIILHGVDWFRSM 240 Query 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLL 302 G+EKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLL Sbjct 241 GTEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLL 300 Query 303 TDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREG 362 TDEHLDVPLDYEGVGA GSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREG Sbjct 301 TDEHLDVPLDYEGVGAVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREG 360 Query 363 TFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLA 422 TFWLDKIYERLETGRG+HEDIDKLLDISDSILGK+FCALGDGAASPVMSSI +FRDEY+A Sbjct 361 TFWLDKIYERLETGRGTHEDIDKLLDISDSILGKAFCALGDGAASPVMSSINYFRDEYVA 420 Query 423 HVEGGGCPFDPRDSMLVANGVDA 445 HVEGGGCPFDPR+SML+ANG A Sbjct 421 HVEGGGCPFDPRESMLMANGDKA 443 >gi|289751828|ref|ZP_06511206.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T92] gi|289692415|gb|EFD59844.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T92] Length=380 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/379 (100%), Positives = 379/379 (100%), Gaps = 0/379 (0%) Query 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR Sbjct 1 MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLR 60 Query 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI Sbjct 61 GRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 Query 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA Sbjct 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 Query 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR Sbjct 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 Query 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP Sbjct 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 Query 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR Sbjct 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 Query 361 EGTFWLDKIYERLETGRGS 379 EGTFWLDKIYERLETGRGS Sbjct 361 EGTFWLDKIYERLETGRGS 379 >gi|333991504|ref|YP_004524118.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium sp. JDM601] gi|333487472|gb|AEF36864.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium sp. JDM601] Length=450 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/442 (80%), Positives = 399/442 (91%), Gaps = 4/442 (0%) Query 3 TQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62 T ATPLTPV+S +WDDPESWTL TY+RH GYQ +Q+AL M PDDVI +VKDSGLRGR Sbjct 9 TAATPLTPVLSSYWDDPESWTLETYRRHG---GYQGMQRALAMAPDDVIELVKDSGLRGR 65 Query 63 GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122 GGAGF+TGTKWSF+PQG GA AKPHYL+VNADESEPGTCKDIPL+LATPHVLIEG+II Sbjct 66 GGAGFSTGTKWSFVPQGTEGAGAKPHYLLVNADESEPGTCKDIPLLLATPHVLIEGMIIC 125 Query 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182 ++AIRA HAF+YVRGEV+P+LRRLHNAVAEAYAAG LG +IGG+GFDL++ VHAGAGAYI Sbjct 126 SHAIRARHAFIYVRGEVLPILRRLHNAVAEAYAAGLLGTDIGGTGFDLDITVHAGAGAYI 185 Query 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242 CGEETAL+DSLEG RGQPRLRPPFPAVAGLY PTV+NNVE+IASVPSI+ G DWFRSM Sbjct 186 CGEETALIDSLEGYRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPSILRNGADWFRSM 245 Query 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLL 302 G+EKS G+TLYSLSGHV RPGQYEAPLGITLRELL+YAGG+R G+RLKFWTPGGSSTPLL Sbjct 246 GTEKSRGYTLYSLSGHVNRPGQYEAPLGITLRELLEYAGGIRDGNRLKFWTPGGSSTPLL 305 Query 303 TDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREG 362 TD+HLD+PLDYEG+ +AGSMLGTKAL+IFDETTCVVRA RRW+EFYKHESCGKCTPCREG Sbjct 306 TDQHLDIPLDYEGMVSAGSMLGTKALQIFDETTCVVRAARRWSEFYKHESCGKCTPCREG 365 Query 363 TFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLA 422 T+WL IYERLETGRG+ ED+D LLDI+D + GKSFCALGDGAA PV SSI++FRDEY+A Sbjct 366 TYWLVPIYERLETGRGTPEDLDTLLDIADVLFGKSFCALGDGAAMPVKSSIEYFRDEYIA 425 Query 423 HVEGGGCPFDPRDSMLVANGVD 444 H++ GGCPFDP+ SM V NG D Sbjct 426 HLD-GGCPFDPKASMFVPNGSD 446 >gi|108798545|ref|YP_638742.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS] gi|119867645|ref|YP_937597.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS] gi|108768964|gb|ABG07686.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS] gi|119693734|gb|ABL90807.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS] Length=438 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/435 (83%), Positives = 395/435 (91%), Gaps = 4/435 (0%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 T LTPV+SR WD+PESWTL TY+RH GY+AL++AL PDDVI+ +KDSGLRGRGGA Sbjct 2 TALTPVLSRFWDEPESWTLETYRRHG---GYRALEQALGTAPDDVITTIKDSGLRGRGGA 58 Query 66 GFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 GF TGTKWSFIPQGD G AAKPHYLV+NADESEPGTCKDIPL+L TPH L+EG IIAAYA Sbjct 59 GFPTGTKWSFIPQGDEGPAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYA 118 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRAHHAF+YVRGEVVPVLRRL AVAEAY AG+LG +I GSGFDL+L+VHAGAGAYICGE Sbjct 119 IRAHHAFIYVRGEVVPVLRRLQAAVAEAYEAGYLGTDIRGSGFDLDLIVHAGAGAYICGE 178 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP I+LGGIDWFRSMGSE Sbjct 179 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSE 238 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELL+YAGGVRAGH LKFWTPGGSSTPLLT E Sbjct 239 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLEYAGGVRAGHELKFWTPGGSSTPLLTGE 298 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDVPLDYEG+ + GSMLGTKAL+IFDETTCVVRAVRRWT+FY HESCGKCTPCREGT+W Sbjct 299 HLDVPLDYEGMASVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYW 358 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +IY RLE+G + D+DKLLDISD+ILGKSFCALGDGAASP++SSIK+FRDEYLAH+ Sbjct 359 LAQIYARLESGEATEADVDKLLDISDTILGKSFCALGDGAASPIISSIKYFRDEYLAHL- 417 Query 426 GGGCPFDPRDSMLVA 440 G GCPFDP S L+A Sbjct 418 GNGCPFDPHASTLMA 432 >gi|126434143|ref|YP_001069834.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS] gi|126233943|gb|ABN97343.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS] Length=438 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/435 (83%), Positives = 395/435 (91%), Gaps = 4/435 (0%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 T LTPV+SR WD+PESWTL TY+RH GY+AL++AL PDDVI+ +KDSGLRGRGGA Sbjct 2 TALTPVLSRFWDEPESWTLETYRRHG---GYRALEQALATAPDDVITTIKDSGLRGRGGA 58 Query 66 GFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 GF TGTKWSFIPQGD G AAKPHYLV+NADESEPGTCKDIPL+L TPH L+EG IIAAYA Sbjct 59 GFPTGTKWSFIPQGDEGPAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYA 118 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRAHHAF+YVRGEVVPVLRRL AVAEAY AG+LG +I GSGFDL+L+VHAGAGAYICGE Sbjct 119 IRAHHAFIYVRGEVVPVLRRLQAAVAEAYDAGYLGTDIRGSGFDLDLIVHAGAGAYICGE 178 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP I+LGGIDWFRSMGSE Sbjct 179 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSE 238 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELL+YAGGVRAGH LKFWTPGGSSTPLLT E Sbjct 239 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLEYAGGVRAGHELKFWTPGGSSTPLLTGE 298 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDVPLDYEG+ + GSMLGTKAL+IFDETTCVVRAVRRWT+FY HESCGKCTPCREGT+W Sbjct 299 HLDVPLDYEGMASVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYW 358 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +IY RLE+G + D+DKLLDISD+ILGKSFCALGDGAASP++SSIK+FRDEYLAH+ Sbjct 359 LAQIYARLESGDATEADVDKLLDISDTILGKSFCALGDGAASPIISSIKYFRDEYLAHL- 417 Query 426 GGGCPFDPRDSMLVA 440 G GCPFDP S L+A Sbjct 418 GNGCPFDPHASTLMA 432 >gi|315445434|ref|YP_004078313.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1] gi|315263737|gb|ADU00479.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1] Length=438 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/435 (83%), Positives = 390/435 (90%), Gaps = 4/435 (0%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 T LTPV+SR WD+P+ WT+ TY RH GYQAL++AL M PD+VI VKDSGLRGRGGA Sbjct 2 TSLTPVLSRFWDEPQPWTMDTYIRHG---GYQALERALAMSPDEVIGTVKDSGLRGRGGA 58 Query 66 GFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 GF TGTKWSFIPQG GAAAKPHYLV+NADESEPGTCKDIPLML TPH L+EG IIAAYA Sbjct 59 GFPTGTKWSFIPQGGEGAAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYA 118 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRAHHAF+Y+RGEVVPVLRRL AVAEAYAAG LG +I GSGFDLEL+VHAGAGAYICGE Sbjct 119 IRAHHAFIYLRGEVVPVLRRLQAAVAEAYAAGHLGHDIHGSGFDLELIVHAGAGAYICGE 178 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP I+L G+DWFRSMGSE Sbjct 179 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSE 238 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVT PGQYEAPLGITLRELLDYAGGVRAGH LKFWTPGGSSTPLLT + Sbjct 239 KSPGFTLYSLSGHVTTPGQYEAPLGITLRELLDYAGGVRAGHELKFWTPGGSSTPLLTAD 298 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDVPLDYEG+ GSMLGTKAL+IFD+TTCVVRAVRRWT+FY HESCGKCTPCREGT+W Sbjct 299 HLDVPLDYEGMAGVGSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYW 358 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +IYERLETGRG+ D+DKLLDISD+I GKSFCALGDGAASP+MSS+KHFRDEY AH+ Sbjct 359 LAQIYERLETGRGTEADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL- 417 Query 426 GGGCPFDPRDSMLVA 440 G CPFDP SML A Sbjct 418 GNACPFDPYASMLTA 432 >gi|333922083|ref|YP_004495664.1| NADH-quinone oxidoreductase subunit F [Amycolicicoccus subflavus DQS3-9A1] gi|333484304|gb|AEF42864.1| NADH-quinone oxidoreductase subunit F [Amycolicicoccus subflavus DQS3-9A1] Length=440 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/439 (81%), Positives = 389/439 (89%), Gaps = 5/439 (1%) Query 7 PLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAG 66 PLTP +SR+WD P +WTL Y+RHD GYQA+ KAL MPPD+VI VKD+GLRGRGGAG Sbjct 2 PLTPFLSRYWDAPGTWTLDAYRRHD---GYQAVSKALRMPPDEVIQTVKDAGLRGRGGAG 58 Query 67 FATGTKWSFIPQG-DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 F TG KW FIPQG + KPHYLVVNADESEPGTCKDIPLMLATPH L+EGVIIAAYA Sbjct 59 FPTGMKWGFIPQGPEKDGTVKPHYLVVNADESEPGTCKDIPLMLATPHALVEGVIIAAYA 118 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRA HAF+YVRGEVVPVLRRL AVAEAY AG+LGR+I GSG+DLEL+VHAGAGAYICGE Sbjct 119 IRASHAFIYVRGEVVPVLRRLQAAVAEAYEAGYLGRDILGSGYDLELIVHAGAGAYICGE 178 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP IIL GIDWFRSMG+E Sbjct 179 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPIILNGIDWFRSMGTE 238 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGG+RAGH+LKFWTPGGSSTP+ T+E Sbjct 239 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGIRAGHKLKFWTPGGSSTPIFTEE 298 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDV LDYEG AAGSMLGTKAL+IFD+TTCVVRAV RWTEFY HESCGKCTPCREGT+W Sbjct 299 HLDVALDYEGCSAAGSMLGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTYW 358 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +I ERLE G G+ D+DKLLD+SD+ILGKSFCALGDGAASP+MSSIK+FRDEYLAH+ Sbjct 359 LVQILERLENGLGTEADLDKLLDVSDNILGKSFCALGDGAASPIMSSIKYFRDEYLAHLP 418 Query 426 GGGCPFDPRDSMLVANGVD 444 GCPFDP S L+A V+ Sbjct 419 -DGCPFDPYKSTLMAERVE 436 >gi|111022877|ref|YP_705849.1| NADH dehydrogenase subunit F [Rhodococcus jostii RHA1] gi|110822407|gb|ABG97691.1| probable NADH dehydrogenase subunit F [Rhodococcus jostii RHA1] Length=432 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/434 (84%), Positives = 394/434 (91%), Gaps = 7/434 (1%) Query 7 PLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAG 66 PLTPV+SR+WD+PESWTL TY+RHD GY+ LQKAL M PD+VIS VK++GLRGRGGAG Sbjct 2 PLTPVLSRYWDEPESWTLDTYRRHD---GYEGLQKALRMDPDEVISTVKEAGLRGRGGAG 58 Query 67 FATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAI 126 F TG KWSFIPQGD AKPHYLVVNADESEPGTCKD+PLMLATPH L+EGVIIAAYAI Sbjct 59 FPTGMKWSFIPQGD----AKPHYLVVNADESEPGTCKDMPLMLATPHALVEGVIIAAYAI 114 Query 127 RAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEE 186 RA HAF+YVRGEVVPVLRRL AVAEAYAAG+LG NI SGFDLELVVHAGAGAYICGEE Sbjct 115 RAGHAFIYVRGEVVPVLRRLQAAVAEAYAAGYLGTNILDSGFDLELVVHAGAGAYICGEE 174 Query 187 TALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEK 246 TALLDSLEGRRGQPRLRPPFPAVAGLY PTV+NNVE+IASVP II+ GI+WFRSMGSEK Sbjct 175 TALLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIIVNGIEWFRSMGSEK 234 Query 247 SPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEH 306 SPGFTLYSLSGHVT+PGQYEAPLGITLRELL+YAGGVRAGHRLKFWTPGGSSTP+ TDEH Sbjct 235 SPGFTLYSLSGHVTKPGQYEAPLGITLRELLEYAGGVRAGHRLKFWTPGGSSTPIFTDEH 294 Query 307 LDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWL 366 LDV LDYEGVGAAGSMLGTKAL+IFDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 295 LDVALDYEGVGAAGSMLGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWL 354 Query 367 DKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEG 426 +I ERLE G G+ D++KLLDI+D+ILGKSFCALGDGAASP+MSSIK+FRDEYLAH E Sbjct 355 VQILERLERGEGTDADLEKLLDIADNILGKSFCALGDGAASPIMSSIKYFRDEYLAHFEQ 414 Query 427 GGCPFDPRDSMLVA 440 GGCPFDP S L+A Sbjct 415 GGCPFDPHQSTLMA 428 >gi|118471561|ref|YP_886419.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis str. MC2 155] gi|118172848|gb|ABK73744.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis str. MC2 155] Length=443 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/441 (83%), Positives = 397/441 (91%), Gaps = 9/441 (2%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 TPLTPV+SR WD+PE WTL TY+RHD GYQ LQ+AL+M PDDVI+ VKDSGLRGRGGA Sbjct 2 TPLTPVLSRFWDEPEPWTLETYRRHD---GYQGLQRALSMGPDDVIAFVKDSGLRGRGGA 58 Query 66 GFATGTKWSFIPQ--GDT---GAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVI 120 GF TGTKWSFIPQ GD G AAKPHYLV+NADESEPGTCKDIPL+L TPH L+EG I Sbjct 59 GFPTGTKWSFIPQERGDQPAGGPAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAI 118 Query 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180 IAAYAIRA HAF+YVRGEV+PVLRRL AVAEAYAAG+LG +I GSGFDL+L+VHAGAGA Sbjct 119 IAAYAIRARHAFIYVRGEVLPVLRRLQAAVAEAYAAGYLGTDIMGSGFDLDLIVHAGAGA 178 Query 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP I++ G+DWFR Sbjct 179 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPIMVNGVDWFR 238 Query 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTP 300 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELL+YAGGVRAGH+LKFWTPGGSSTP Sbjct 239 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLEYAGGVRAGHQLKFWTPGGSSTP 298 Query 301 LLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCR 360 LLT EHLDVPLDYEG+ + GSMLGTKAL+IFDETTCVVRAVRRWT+FY HESCGKCTPCR Sbjct 299 LLTAEHLDVPLDYEGMASVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCR 358 Query 361 EGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEY 420 EGT+WL +IY RLE G G+ DIDKLLDISD+I GKSFCALGDGAASP+MSSIKHFRDEY Sbjct 359 EGTYWLAQIYARLENGAGTEADIDKLLDISDNIFGKSFCALGDGAASPIMSSIKHFRDEY 418 Query 421 LAHVEGGGCPFDPRDSMLVAN 441 +AH++ GGCPFDP S L+A Sbjct 419 VAHLD-GGCPFDPHASTLMAT 438 >gi|145225065|ref|YP_001135743.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum PYR-GCK] gi|145217551|gb|ABP46955.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum PYR-GCK] Length=438 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/435 (83%), Positives = 389/435 (90%), Gaps = 4/435 (0%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 T LTPV+SR WD+P+ WT+ TY RH GYQAL++AL M PDDVI VKDSGLRGRGGA Sbjct 2 TSLTPVLSRFWDEPQPWTMDTYIRHG---GYQALERALAMSPDDVIGTVKDSGLRGRGGA 58 Query 66 GFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 GF TGTKWSFIPQG GAAAKPHYLV+NADESEPGTCKDIPLML TPH L+EG IIAAYA Sbjct 59 GFPTGTKWSFIPQGGEGAAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYA 118 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRA+HAF+Y+RGEVVPVLRRL AVAEAYAAG LG +I GSGFDLEL VHAGAGAYICGE Sbjct 119 IRANHAFIYLRGEVVPVLRRLQAAVAEAYAAGHLGHDIHGSGFDLELTVHAGAGAYICGE 178 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP I+L G+DWFRSMGSE Sbjct 179 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSE 238 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVT PGQYEAPLGITLRELLDYAGGVRAGH LKFWTPGGSSTPLLT + Sbjct 239 KSPGFTLYSLSGHVTTPGQYEAPLGITLRELLDYAGGVRAGHELKFWTPGGSSTPLLTAD 298 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDVPLDYEG+ GSMLGTKAL+IFD+TTCVVRAVRRWT+FY HESCGKCTPCREGT+W Sbjct 299 HLDVPLDYEGMAGVGSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYW 358 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +IYERLETGRG+ D+DKLLDISD+I GKSFCALGDGAASP+MSS+KHFRDEY AH+ Sbjct 359 LAQIYERLETGRGTEADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL- 417 Query 426 GGGCPFDPRDSMLVA 440 G CPFDP SML A Sbjct 418 GNACPFDPYASMLAA 432 >gi|120402878|ref|YP_952707.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii PYR-1] gi|119955696|gb|ABM12701.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii PYR-1] Length=441 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/437 (83%), Positives = 390/437 (90%), Gaps = 5/437 (1%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 T LTPV+SR WD+P+ W+L TY+RH GYQAL +AL M PD VI+ VKDSGLRGRGGA Sbjct 2 TALTPVLSRFWDEPQPWSLDTYRRHG---GYQALDRALAMTPDQVITTVKDSGLRGRGGA 58 Query 66 GFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 GF TGTKWSFIPQGD G AAKPHYLV+NADESEPGTCKDIPLML TPH L+EG IIAAYA Sbjct 59 GFPTGTKWSFIPQGDEGPAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYA 118 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRAHHAF+Y+RGEVVPVLRRL AVAEAYAAG LG +I GSGFDLEL+VHAGAGAYICGE Sbjct 119 IRAHHAFIYLRGEVVPVLRRLQAAVAEAYAAGHLGSDIHGSGFDLELIVHAGAGAYICGE 178 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP ++L G+DWFRSMGSE Sbjct 179 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPVLLNGVDWFRSMGSE 238 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVT PGQYEAPLGITLRELL+YAGGVRAGH LKFWTPGGSSTPLLT E Sbjct 239 KSPGFTLYSLSGHVTTPGQYEAPLGITLRELLEYAGGVRAGHELKFWTPGGSSTPLLTAE 298 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDVPLDYEG+ GSMLGTKAL+IFDETTCVVRAVRRWT+FY HESCGKCTPCREGT+W Sbjct 299 HLDVPLDYEGMAGVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYW 358 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +IYERLETG G+ D+DKLLDISD+I GKSFCALGDGAASP+MSS+KHFR EY AH++ Sbjct 359 LAQIYERLETGAGTEADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRAEYEAHLD 418 Query 426 --GGGCPFDPRDSMLVA 440 G GCPFDP SML A Sbjct 419 PVGKGCPFDPYASMLAA 435 >gi|226365385|ref|YP_002783168.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4] gi|226243875|dbj|BAH54223.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4] Length=432 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/434 (83%), Positives = 392/434 (91%), Gaps = 7/434 (1%) Query 7 PLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAG 66 PLTPV+SR+WD+PESWTL TY+RHD GY+ LQKAL M PD+VIS VK++GLRGRGGAG Sbjct 2 PLTPVLSRYWDEPESWTLDTYRRHD---GYEGLQKALRMEPDEVISTVKEAGLRGRGGAG 58 Query 67 FATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAI 126 F TG KWSFIPQGD KPHYLVVNADESEPGTCKD+PL+LATPH L+EGVIIAAYAI Sbjct 59 FPTGMKWSFIPQGDD----KPHYLVVNADESEPGTCKDMPLLLATPHALVEGVIIAAYAI 114 Query 127 RAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEE 186 RA HAF+YVRGEVVPVLRRL AVAEAYAAG+LG++I G+GFDLELVVHAGAGAYICGEE Sbjct 115 RAGHAFIYVRGEVVPVLRRLQAAVAEAYAAGYLGKDILGTGFDLELVVHAGAGAYICGEE 174 Query 187 TALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEK 246 TALLDSLEGRRGQPRLRPPFPAVAGLY PTV+NNVE+IASVP II+ GI+WFRSMGSEK Sbjct 175 TALLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIIVNGIEWFRSMGSEK 234 Query 247 SPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEH 306 SPGFTLYSLSGHVT PGQYEAPLGITLRELL YAGGVRAGHRLKFWTPGGSSTP+ TDEH Sbjct 235 SPGFTLYSLSGHVTTPGQYEAPLGITLRELLGYAGGVRAGHRLKFWTPGGSSTPIFTDEH 294 Query 307 LDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWL 366 LDV LDYEGVGAAGSMLGTKAL+IFDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 295 LDVALDYEGVGAAGSMLGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWL 354 Query 367 DKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEG 426 +I ERLE G G+ D+ KLLDI+D+ILGKSFCALGDGAASP+MSS+K+FRDEYLAH E Sbjct 355 VQILERLERGEGTDADLQKLLDIADNILGKSFCALGDGAASPIMSSVKYFRDEYLAHFEQ 414 Query 427 GGCPFDPRDSMLVA 440 GGCPFDP S L+A Sbjct 415 GGCPFDPHQSTLMA 428 >gi|320009199|gb|ADW04049.1| NADH-quinone oxidoreductase, F subunit [Streptomyces flavogriseus ATCC 33331] Length=457 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/443 (76%), Positives = 375/443 (85%), Gaps = 7/443 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD+PESWTL TY RHD GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 12 TSPEKLLAPVLSAFWDEPESWTLDTYHRHD---GYEGLRKALAMEPDDLIAYVKDSGLRG 68 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 69 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVI 124 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAY AG+LG N+ GSG DLEL VHAGAGAY Sbjct 125 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGTNVLGSGLDLELTVHAGAGAY 184 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWF+S Sbjct 185 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKS 244 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHVT PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ Sbjct 245 MGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLDMSGGIREGHRLKFWTPGGSSTPM 304 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 TDEHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 305 FTDEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 364 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 365 GTYWLVQLLRDIEAGKGQMADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 424 Query 422 AHVEGGGCPFDPRDSMLVANGVD 444 H+ G GCPFDP S L A+ D Sbjct 425 QHITGKGCPFDPARSTLWADDKD 447 >gi|345001412|ref|YP_004804266.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. SirexAA-E] gi|344317038|gb|AEN11726.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. SirexAA-E] Length=457 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/443 (77%), Positives = 376/443 (85%), Gaps = 7/443 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L+PV+S WD+PE WTL TY+RHD GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 12 TSPEKLLSPVLSAFWDEPEPWTLETYRRHD---GYEGLRKALAMSPDDLIAYVKDSGLRG 68 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 69 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVI 124 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAY AG+LG NI GSG DLEL VHAGAGAY Sbjct 125 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGANILGSGLDLELTVHAGAGAY 184 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWF+S Sbjct 185 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNRGKDWFKS 244 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+RAGHRLKFWTPGGSSTP+ Sbjct 245 MGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLDMSGGMRAGHRLKFWTPGGSSTPM 304 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 TDEHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 305 FTDEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 364 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 365 GTYWLVQLLRDIEAGKGEMADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 424 Query 422 AHVEGGGCPFDPRDSMLVANGVD 444 HV G GCPFDP S L A+ D Sbjct 425 QHVTGKGCPFDPARSTLWADDTD 447 >gi|239989935|ref|ZP_04710599.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL 11379] gi|291446952|ref|ZP_06586342.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998] gi|291349899|gb|EFE76803.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998] Length=459 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/440 (76%), Positives = 374/440 (85%), Gaps = 7/440 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD PESWTL TY+RH+ GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 12 TSPEKLLAPVLSSFWDQPESWTLDTYRRHE---GYEGLRKALAMAPDDLIAYVKDSGLRG 68 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 69 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVI 124 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAY AG+LG NI GSG DLEL VHAGAGAY Sbjct 125 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAY 184 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWF+S Sbjct 185 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKS 244 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHVT PGQYEAPLGITLR+LLD +GG+RAGHRLKFWTPGGSSTP+ Sbjct 245 MGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLDMSGGMRAGHRLKFWTPGGSSTPM 304 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 T+EHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 305 FTEEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 364 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 365 GTYWLVQLLRDIEAGKGEMADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 424 Query 422 AHVEGGGCPFDPRDSMLVAN 441 H+ G GCPFDP S A+ Sbjct 425 QHITGKGCPFDPARSTAWAD 444 >gi|326777367|ref|ZP_08236632.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus XylebKG-1] gi|326657700|gb|EGE42546.1| NADH-quinone oxidoreductase, F subunit [Streptomyces griseus XylebKG-1] Length=459 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/440 (76%), Positives = 374/440 (85%), Gaps = 7/440 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD P+SWTL TY+RH+ GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 12 TSPEKLLAPVLSAFWDQPDSWTLDTYRRHE---GYEGLRKALAMAPDDLIAYVKDSGLRG 68 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 69 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVI 124 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAY AG+LG NI GSG DLEL VHAGAGAY Sbjct 125 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAY 184 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWF+S Sbjct 185 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKS 244 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHVT PGQYEAPLGITLR+LLD +GG+RAGHRLKFWTPGGSSTP+ Sbjct 245 MGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLDMSGGMRAGHRLKFWTPGGSSTPM 304 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 T+EHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 305 FTEEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 364 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 365 GTYWLVQLLRDIEAGKGEMADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 424 Query 422 AHVEGGGCPFDPRDSMLVAN 441 H+ G GCPFDP S A+ Sbjct 425 QHITGKGCPFDPARSTAWAD 444 >gi|182436772|ref|YP_001824491.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465288|dbj|BAG19808.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp. griseus NBRC 13350] Length=460 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/440 (76%), Positives = 374/440 (85%), Gaps = 7/440 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD P+SWTL TY+RH+ GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 13 TSPEKLLAPVLSAFWDQPDSWTLDTYRRHE---GYEGLRKALAMAPDDLIAYVKDSGLRG 69 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 70 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVI 125 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAY AG+LG NI GSG DLEL VHAGAGAY Sbjct 126 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAY 185 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWF+S Sbjct 186 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKS 245 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHVT PGQYEAPLGITLR+LLD +GG+RAGHRLKFWTPGGSSTP+ Sbjct 246 MGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLDMSGGMRAGHRLKFWTPGGSSTPM 305 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 T+EHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 306 FTEEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 365 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 366 GTYWLVQLLRDIEAGKGEMADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 425 Query 422 AHVEGGGCPFDPRDSMLVAN 441 H+ G GCPFDP S A+ Sbjct 426 QHITGKGCPFDPARSTAWAD 445 >gi|328884317|emb|CCA57556.1| NADH-ubiquinone oxidoreductase chain F [Streptomyces venezuelae ATCC 10712] Length=449 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/434 (76%), Positives = 372/434 (86%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L+PV+S WD P SWTL TY+RH+ GYQ L+KAL M PD +I+ VK+SGLRGRGGAGF Sbjct 16 LSPVLSAFWDQPNSWTLETYERHE---GYQGLRKALAMSPDALIAYVKESGLRGRGGAGF 72 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG+IIA YAIR Sbjct 73 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLYANPHSLIEGMIIACYAIR 128 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGEVVPVLRRLH AV EAYAAG+LGRN+ GSG ++++ VHAGAGAYICGEET Sbjct 129 SEHAFIYLRGEVVPVLRRLHEAVREAYAAGYLGRNVLGSGLNVDITVHAGAGAYICGEET 188 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G +WF SMGSEKS Sbjct 189 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNRGKEWFTSMGSEKS 248 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHVT PGQYEAPLGITLR+LLD +GG+RAGHRLKFWTPGGSSTP+ TDEHL Sbjct 249 PGFTLYSLSGHVTSPGQYEAPLGITLRQLLDMSGGMRAGHRLKFWTPGGSSTPMFTDEHL 308 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 309 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 368 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G G+ D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY H+ G Sbjct 369 QLLRSIENGTGTLADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGR 428 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 429 GCPFDPAKSTAWAD 442 >gi|302553431|ref|ZP_07305773.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302471049|gb|EFL34142.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length=449 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/434 (77%), Positives = 369/434 (86%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+S WD+ SWTL Y+RHD GY+ L+KAL M PDD+I+ VKDSGLRGRGGAGF Sbjct 17 LAPVLSAFWDEDRSWTLDVYRRHD---GYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGF 73 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG+IIA YAIR Sbjct 74 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIR 129 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGEVVPVLRRLH+AV EAY AGFLG NI GSG DL++ VHAGAGAYICGEET Sbjct 130 SSHAFIYLRGEVVPVLRRLHSAVREAYEAGFLGENILGSGLDLDITVHAGAGAYICGEET 189 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G +WFRSMGSEKS Sbjct 190 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAIMQRGKEWFRSMGSEKS 249 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ TDEHL Sbjct 250 PGFTLYSLSGHVASPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPMFTDEHL 309 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 310 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 369 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FRDEY H+ G Sbjct 370 QLLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHITGR 429 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 430 GCPFDPAKSTAWAD 443 >gi|297201628|ref|ZP_06919025.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] gi|297147935|gb|EDY55035.2| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] Length=449 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/440 (75%), Positives = 375/440 (86%), Gaps = 7/440 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD+ +SWTL YQRH+ GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 11 TSPEKLLAPVLSAFWDEDKSWTLDVYQRHE---GYEGLRKALAMSPDDLIAYVKDSGLRG 67 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG+II Sbjct 68 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMII 123 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH+AV+EAYAAG+LG+NI GSG DL++ VHAGAGAY Sbjct 124 ACYAIRSSHAFIYLRGEVVPVLRRLHSAVSEAYAAGYLGQNILGSGLDLDITVHAGAGAY 183 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRS Sbjct 184 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILQRGKDWFRS 243 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHV PGQYEAPLGITLR+LL+ +GG+R GHRLKFWTPGGSSTP+ Sbjct 244 MGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLEMSGGMRPGHRLKFWTPGGSSTPM 303 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 T+EHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 304 FTEEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 363 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 364 GTYWLVQLLRDIEAGKGVMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 423 Query 422 AHVEGGGCPFDPRDSMLVAN 441 H+ G GCPFDP S A+ Sbjct 424 QHITGRGCPFDPAKSTAWAD 443 >gi|21222950|ref|NP_628729.1| NADH dehydrogenase subunit NuoF [Streptomyces coelicolor A3(2)] gi|289769829|ref|ZP_06529207.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans TK24] gi|7387968|sp|Q9XAQ9.1|NUOF_STRCO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|5042272|emb|CAB44526.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289700028|gb|EFD67457.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans TK24] Length=449 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/434 (77%), Positives = 369/434 (86%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+S WD+ ESWTL Y+RH+ GY+ L+KAL M PDD+I+ VK+SGLRGRGGAGF Sbjct 17 LAPVLSAFWDEDESWTLDVYRRHE---GYEGLRKALAMAPDDLIAYVKESGLRGRGGAGF 73 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++IA YAIR Sbjct 74 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIR 129 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGEVVPVLRRLH AV EAYAAGFLG NI GSG DL L VHAGAGAYICGEET Sbjct 130 SSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGAYICGEET 189 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRSMGSEKS Sbjct 190 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFRSMGSEKS 249 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ TDEHL Sbjct 250 PGFTLYSLSGHVAGPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPMFTDEHL 309 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 310 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 369 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY H+ G Sbjct 370 QLLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGR 429 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 430 GCPFDPAKSTAWAD 443 >gi|54024631|ref|YP_118873.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM 10152] gi|54016139|dbj|BAD57509.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM 10152] Length=441 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/432 (80%), Positives = 379/432 (88%), Gaps = 4/432 (0%) Query 6 TPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGA 65 T L PV++R+WDDP+SWTL TY+RHD GY+ L+ AL M PD VI VKD+GLRGRGGA Sbjct 2 TALAPVLTRYWDDPQSWTLDTYRRHD---GYEGLRIALGMEPDQVIQTVKDAGLRGRGGA 58 Query 66 GFATGTKWSFIPQGD-TGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAY 124 GF TG KW FIPQG KPHYLVVNADESEPGTCKDIPL++ATPH L+EG IIA+Y Sbjct 59 GFPTGMKWGFIPQGPGPDGTVKPHYLVVNADESEPGTCKDIPLLMATPHALVEGAIIASY 118 Query 125 AIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICG 184 AIRA+ AF+Y+RGEVVPVLRRL AV +AYAAG LGR+I GSGFDLEL+VHAGAGAYICG Sbjct 119 AIRANTAFIYLRGEVVPVLRRLRAAVDQAYAAGLLGRDILGSGFDLELIVHAGAGAYICG 178 Query 185 EETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGS 244 EETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP I+ G DWFRSMGS Sbjct 179 EETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPILRYGTDWFRSMGS 238 Query 245 EKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTD 304 EKSPGFT+YSLSGHVTRPGQYEAPLGITLRELLDYA GVRAGHRLKFWTPGGSSTPL TD Sbjct 239 EKSPGFTIYSLSGHVTRPGQYEAPLGITLRELLDYADGVRAGHRLKFWTPGGSSTPLFTD 298 Query 305 EHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTF 364 EHLDVPLDYEGV AAGSMLGTKAL+IFDETTCVVRAV RWTEFY HESCGKCTPCREGT+ Sbjct 299 EHLDVPLDYEGVAAAGSMLGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTY 358 Query 365 WLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV 424 WL ++ R+ETG G+ D+D LLDI+DSI GKSFCALGDGAASP++SS+K+FRDEYLAH+ Sbjct 359 WLVQLLRRIETGGGTEADLDTLLDITDSINGKSFCALGDGAASPIVSSVKYFRDEYLAHM 418 Query 425 EGGGCPFDPRDS 436 G GCPFDP S Sbjct 419 RGDGCPFDPARS 430 >gi|337767474|emb|CCB76185.1| NADH-quinone oxidoreductase subunit F [Streptomyces cattleya NRRL 8057] Length=459 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/442 (78%), Positives = 386/442 (88%), Gaps = 10/442 (2%) Query 3 TQATP---LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGL 59 T+ TP LTPV+S WDDPESWTL +Y+RHD GY+ L+KAL MPPDDVI++VK++GL Sbjct 17 TETTPEKLLTPVLSAFWDDPESWTLESYRRHD---GYEGLRKALAMPPDDVIALVKEAGL 73 Query 60 RGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGV 119 RGRGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG+ Sbjct 74 RGRGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLHANPHALIEGI 129 Query 120 IIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAG 179 +IA +AIR+HHAFVY+RGEVVPVLRRLH+AVAEAYAAG+LG NI GSGFDLE+ VHAGAG Sbjct 130 VIACHAIRSHHAFVYLRGEVVPVLRRLHHAVAEAYAAGYLGANIQGSGFDLEVTVHAGAG 189 Query 180 AYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWF 239 AYICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWF Sbjct 190 AYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAIVHRGKDWF 249 Query 240 RSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSST 299 RSMGSEKSPGFTLYSLSGHV RPGQYEAPLG+TLR+LLD +GG+R GHRLKFWTPGGSST Sbjct 250 RSMGSEKSPGFTLYSLSGHVARPGQYEAPLGVTLRQLLDISGGMRPGHRLKFWTPGGSST 309 Query 300 PLLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359 PLLTDEHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPC Sbjct 310 PLLTDEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPC 369 Query 360 REGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDE 419 REGT+WL ++ +E G+G+ D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR E Sbjct 370 REGTYWLVQLLRDIEAGKGNPADLDKLADIADNINGKSFCALGDGAASPIFSSLKYFRAE 429 Query 420 YLAHVEGGGCPFDPRDSMLVAN 441 Y H++G GCPFDP S A+ Sbjct 430 YEEHLDGRGCPFDPARSTAWAD 451 >gi|294814399|ref|ZP_06773042.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] gi|326442789|ref|ZP_08217523.1| NADH dehydrogenase I chain F [Streptomyces clavuligerus ATCC 27064] gi|294326998|gb|EFG08641.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] Length=458 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/434 (77%), Positives = 374/434 (87%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 LTPV+S WD+ ESWTL TY+RHD GYQ L+KAL M PDD+I+ VKDSGLRGRGGAGF Sbjct 25 LTPVLSAFWDEEESWTLETYRRHD---GYQGLRKALAMAPDDLIAHVKDSGLRGRGGAGF 81 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG+IIA +AIR Sbjct 82 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACWAIR 137 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 ++HAF+Y+RGEVVPVLRRLH AV EAY AG+LGRNI GSG DL++ VHAGAGAYICGEET Sbjct 138 SNHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGRNILGSGLDLDITVHAGAGAYICGEET 197 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRSMGS+KS Sbjct 198 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILHRGKDWFRSMGSDKS 257 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 GFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTPLLT+EHL Sbjct 258 AGFTLYSLSGHVASPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPLLTEEHL 317 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGV AAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 318 DVPLDYEGVAAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 377 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G+ D+DKL DI+D+I GKSFCALGDGAASP+ SS+++FR EY AH++G Sbjct 378 QLLRDIEDGKGAPADLDKLADIADNINGKSFCALGDGAASPIFSSLRYFRAEYEAHLDGA 437 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 438 GCPFDPAKSTAWAD 451 >gi|254391142|ref|ZP_05006349.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] gi|197704836|gb|EDY50648.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] Length=456 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/434 (77%), Positives = 374/434 (87%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 LTPV+S WD+ ESWTL TY+RHD GYQ L+KAL M PDD+I+ VKDSGLRGRGGAGF Sbjct 23 LTPVLSAFWDEEESWTLETYRRHD---GYQGLRKALAMAPDDLIAHVKDSGLRGRGGAGF 79 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG+IIA +AIR Sbjct 80 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACWAIR 135 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 ++HAF+Y+RGEVVPVLRRLH AV EAY AG+LGRNI GSG DL++ VHAGAGAYICGEET Sbjct 136 SNHAFIYLRGEVVPVLRRLHEAVREAYEAGYLGRNILGSGLDLDITVHAGAGAYICGEET 195 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRSMGS+KS Sbjct 196 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILHRGKDWFRSMGSDKS 255 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 GFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTPLLT+EHL Sbjct 256 AGFTLYSLSGHVASPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPLLTEEHL 315 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGV AAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 316 DVPLDYEGVAAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 375 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G+ D+DKL DI+D+I GKSFCALGDGAASP+ SS+++FR EY AH++G Sbjct 376 QLLRDIEDGKGAPADLDKLADIADNINGKSFCALGDGAASPIFSSLRYFRAEYEAHLDGA 435 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 436 GCPFDPAKSTAWAD 449 >gi|302536173|ref|ZP_07288515.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C] gi|302445068|gb|EFL16884.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C] Length=459 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/434 (76%), Positives = 373/434 (86%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+S WD+PESWTL TY+RH+ GY+ L+KAL M PD+VI+ VKDSGLRGRGGAGF Sbjct 26 LAPVLSAFWDEPESWTLETYRRHE---GYEGLRKALAMTPDEVIAYVKDSGLRGRGGAGF 82 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH L+EG+IIA YAIR Sbjct 83 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLVEGMIIACYAIR 138 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGE VPVLRRLH AV EAYAAG+LG++I G+G +L++ VHAGAGAYICGEET Sbjct 139 SEHAFIYLRGETVPVLRRLHEAVREAYAAGYLGKDIDGTGRNLDITVHAGAGAYICGEET 198 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAV GLY CPTV+NNVE+IASVP+I+ G DWF++MG+EKS Sbjct 199 ALLDSLEGRRGQPRLRPPFPAVEGLYACPTVVNNVESIASVPAILNKGKDWFKAMGTEKS 258 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ TDEHL Sbjct 259 PGFTLYSLSGHVAGPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPMFTDEHL 318 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 319 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 378 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY HV G Sbjct 379 QLLRDIEAGKGVMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHVTGK 438 Query 428 GCPFDPRDSMLVAN 441 GCPFDPR S L A+ Sbjct 439 GCPFDPRRSTLWAD 452 >gi|29831385|ref|NP_826019.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29608500|dbj|BAC72554.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length=449 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/440 (75%), Positives = 373/440 (85%), Gaps = 7/440 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD+ +SWTL Y+RH+ GY+ L+KAL M PDD+I+ VKDSGLRG Sbjct 11 TSPEKLLAPVLSAFWDEEKSWTLDVYRRHE---GYEGLRKALAMSPDDLIAYVKDSGLRG 67 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 68 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMVI 123 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAYAAG+LG+NI GSG DLE+ VHAGAGAY Sbjct 124 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGYLGKNILGSGLDLEITVHAGAGAY 183 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G +WFRS Sbjct 184 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILHKGKEWFRS 243 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ Sbjct 244 MGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPM 303 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 TDEHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 304 FTDEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 363 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY Sbjct 364 GTYWLVQLLRDIEAGKGVMTDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYE 423 Query 422 AHVEGGGCPFDPRDSMLVAN 441 H+ G GCPFDP S A+ Sbjct 424 QHITGRGCPFDPARSTAWAD 443 >gi|329935992|ref|ZP_08285792.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus M045] gi|329304470|gb|EGG48348.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus M045] Length=462 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/440 (75%), Positives = 373/440 (85%), Gaps = 7/440 (1%) Query 2 TTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRG 61 T+ L PV+S WD+ ESWTL Y+RH+ GY+ L+KAL M PDD+I+ VK+SGLRG Sbjct 23 TSPEKLLAPVLSAFWDEDESWTLDVYRRHE---GYEGLRKALAMSPDDLIAYVKESGLRG 79 Query 62 RGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVII 121 RGGAGF TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++I Sbjct 80 RGGAGFPTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVI 135 Query 122 AAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAY 181 A YAIR+ HAF+Y+RGEVVPVLRRLH AV EAYAAG+LG++I GSG DLEL VHAGAGAY Sbjct 136 ACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGYLGKDILGSGLDLELTVHAGAGAY 195 Query 182 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRS 241 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRS Sbjct 196 ICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILKNGKDWFRS 255 Query 242 MGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPL 301 MGSEKSPGFTLYSLSGHVT PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ Sbjct 256 MGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPM 315 Query 302 LTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCRE 361 T+EHLDVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCRE Sbjct 316 FTEEHLDVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCRE 375 Query 362 GTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYL 421 GT+WL ++ +E G+G D+DKL DI+D+I GK+FCALGDGAASP+ SS+K+FR EY Sbjct 376 GTYWLVQLLRDIEAGKGVMSDLDKLNDIADNINGKAFCALGDGAASPIFSSLKYFRAEYE 435 Query 422 AHVEGGGCPFDPRDSMLVAN 441 H+ G GCPFDP S A+ Sbjct 436 EHITGRGCPFDPARSTAWAD 455 >gi|343926371|ref|ZP_08765876.1| NADH-quinone oxidoreductase chain F [Gordonia alkanivorans NBRC 16433] gi|343763609|dbj|GAA12802.1| NADH-quinone oxidoreductase chain F [Gordonia alkanivorans NBRC 16433] Length=683 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/428 (78%), Positives = 373/428 (88%), Gaps = 6/428 (1%) Query 7 PLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAG 66 P TPV+SRHW +PESW+L Y RH+ YRG L+ AL PPDDVI +VK SGLRGRGGAG Sbjct 244 PDTPVLSRHWHEPESWSLTNYLRHNGYRG---LRTALDTPPDDVIEMVKASGLRGRGGAG 300 Query 67 FATGTKWSFIPQGDTGAA--AKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAY 124 F G KWSFIPQ + A + PHYLVVNADESEPGTCKD+PLMLATPH L+EGV+IAAY Sbjct 301 FPVGMKWSFIPQEKSPGAEPSIPHYLVVNADESEPGTCKDMPLMLATPHTLVEGVVIAAY 360 Query 125 AIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICG 184 AIRAHHAF+YVRGEV VLRRL AV EAYAAG+LG++I GSGFDLELVVHAGAGAYICG Sbjct 361 AIRAHHAFIYVRGEVASVLRRLRTAVDEAYAAGYLGKDILGSGFDLELVVHAGAGAYICG 420 Query 185 EETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGS 244 EETALLDSLEGRRGQPRLRPPFPAVAGLY PTV+NNVE+IASVPSII G+DWFRSMG+ Sbjct 421 EETALLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPSIIRNGVDWFRSMGT 480 Query 245 EKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTD 304 EKSPGFTLYSLSGHVT PGQYEAPLGITLR+LL+ AGGVRAGH LKFWTPGGSSTPLLT Sbjct 481 EKSPGFTLYSLSGHVTHPGQYEAPLGITLRQLLERAGGVRAGHELKFWTPGGSSTPLLTP 540 Query 305 EHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTF 364 +HLDVPLDYEGVGAAGSMLGTKAL+IFDETTCVV AV RWTEFY HESCGKCTPCREGT+ Sbjct 541 DHLDVPLDYEGVGAAGSMLGTKALQIFDETTCVVGAVLRWTEFYAHESCGKCTPCREGTY 600 Query 365 WLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV 424 WL ++ RLE G+ D+D L D+++S++GKSFCALGDGA SP++SS+++FRDEYLAH+ Sbjct 601 WLVQLLHRLEHEGGTAADLDTLSDVTNSVVGKSFCALGDGAGSPIVSSLEYFRDEYLAHL 660 Query 425 EGGGCPFD 432 + GCPFD Sbjct 661 D-HGCPFD 667 >gi|229490823|ref|ZP_04384658.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121] gi|229322213|gb|EEN87999.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121] Length=439 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/433 (82%), Positives = 384/433 (89%), Gaps = 5/433 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+SR+WD P SWTL +Y RHD GYQAL+KAL M PD VI VKD+GLRGRGGAGF Sbjct 3 LAPVLSRYWDQPNSWTLDSYLRHD---GYQALRKALAMSPDAVIETVKDAGLRGRGGAGF 59 Query 68 ATGTKWSFIPQG--DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYA 125 TG KWSFIPQ D KPHYLVVNADESEPGTCKD+PLM+ATPH L+EGVIIAAYA Sbjct 60 PTGLKWSFIPQSTEDKPGDGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYA 119 Query 126 IRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGE 185 IRA AF+YVRGEVVPVLRRL AVAEAYAAG+LGR+I GSGFDL+LVVHAGAGAYICGE Sbjct 120 IRAAKAFIYVRGEVVPVLRRLQTAVAEAYAAGYLGRSILGSGFDLDLVVHAGAGAYICGE 179 Query 186 ETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSE 245 ETALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVPSI+LGG +WFRSMGSE Sbjct 180 ETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSE 239 Query 246 KSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDE 305 KSPGFTLYSLSGHVT PGQYEAPLGITLRELLDYAGGVR GH LKFWTPGGSSTP+ TDE Sbjct 240 KSPGFTLYSLSGHVTTPGQYEAPLGITLRELLDYAGGVRTGHTLKFWTPGGSSTPIFTDE 299 Query 306 HLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFW 365 HLDVPLDYEGVGAAGSMLGTKAL+IFD+TTC+VRAV RWTEFY HESCGKCTPCREGT+W Sbjct 300 HLDVPLDYEGVGAAGSMLGTKALQIFDDTTCIVRAVLRWTEFYAHESCGKCTPCREGTYW 359 Query 366 LDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVE 425 L +I RLE G G+ D+ KLLDISD+ILGKSFCALGDGA SP+MSS+K+FR+EY+AH + Sbjct 360 LVQILRRLEGGTGTEADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFREEYVAHFD 419 Query 426 GGGCPFDPRDSML 438 G GCPFDPR S+L Sbjct 420 GNGCPFDPRRSVL 432 >gi|291437933|ref|ZP_06577323.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291340828|gb|EFE67784.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length=448 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/434 (77%), Positives = 367/434 (85%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+S WD+ SWTL Y+RH GY+ L+KAL M PDDVI+ VKDSGLRGRGGAGF Sbjct 16 LAPVLSAFWDEDRSWTLDVYRRHG---GYEGLRKALAMSPDDVIAYVKDSGLRGRGGAGF 72 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++IA YAIR Sbjct 73 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIR 128 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGEVVPVLRRLH AV EAYAAG LG N+ GSG DLEL VHAGAGAYICGEET Sbjct 129 SSHAFIYLRGEVVPVLRRLHAAVREAYAAGLLGENVLGSGLDLELTVHAGAGAYICGEET 188 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVPSI+ G +WFRSMGSEKS Sbjct 189 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPSILHRGKEWFRSMGSEKS 248 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHV PGQYEAPLGITLR+LL+ +GG+R GHRLKFWTPGGSSTP+ TDEHL Sbjct 249 PGFTLYSLSGHVANPGQYEAPLGITLRQLLEMSGGMRPGHRLKFWTPGGSSTPMFTDEHL 308 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 309 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 368 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY H+ G Sbjct 369 QLLRDIEAGKGRMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGR 428 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 429 GCPFDPAKSTAWAD 442 >gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM 43247] gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM 43247] Length=706 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/435 (78%), Positives = 377/435 (87%), Gaps = 7/435 (1%) Query 2 TTQAT-PLT-PVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGL 59 TTQA P T PV+SRHW +P+SWTL Y +H+ GYQ L+KAL PPDD+I ++K SGL Sbjct 263 TTQAAEPETIPVLSRHWQEPDSWTLDNYLQHN---GYQGLRKALDTPPDDIIELIKASGL 319 Query 60 RGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGV 119 RGRGGAGF G KWSFIPQ D A PHYLVVNADESEPGTCKD+PLMLA+PH L+EGV Sbjct 320 RGRGGAGFPVGMKWSFIPQSDD-PDAPPHYLVVNADESEPGTCKDMPLMLASPHSLVEGV 378 Query 120 IIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAG 179 IIAAYAIRAHHAF+YVRGEV V+RRL AV +AYAAG+LGR+I GSGFDLELVVHAGAG Sbjct 379 IIAAYAIRAHHAFIYVRGEVASVIRRLRTAVDDAYAAGYLGRDILGSGFDLELVVHAGAG 438 Query 180 AYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWF 239 AYICGEETALLDSLEGRRGQPRLRPPFPAVAGLY PTV+NNVE+IASVP II G+DWF Sbjct 439 AYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIIRNGVDWF 498 Query 240 RSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSST 299 RSMG+EKSPGFTLYSLSGHV RPGQYEA LG+TLRELLD AGGVRAGH+LKFWTPGGSST Sbjct 499 RSMGTEKSPGFTLYSLSGHVERPGQYEAALGVTLRELLDRAGGVRAGHQLKFWTPGGSST 558 Query 300 PLLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359 PLLT EHLDVPLDYEGVGAAGSMLGTKAL+IFDETTCVV AV RWT+FY HESCGKCTPC Sbjct 559 PLLTAEHLDVPLDYEGVGAAGSMLGTKALQIFDETTCVVGAVLRWTQFYAHESCGKCTPC 618 Query 360 REGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDE 419 REGT+WL ++ +RLET G+ D+D L D+++SI+GKSFCALGDGA SP++SS+K+FRDE Sbjct 619 REGTYWLVQLLKRLETEGGTTADLDTLADVTNSIVGKSFCALGDGAGSPIVSSLKYFRDE 678 Query 420 YLAHVEGGGCPFDPR 434 Y AH+ GCPF+ R Sbjct 679 YDAHL-ASGCPFEAR 692 >gi|294630801|ref|ZP_06709361.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14] gi|292834134|gb|EFF92483.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14] Length=456 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/434 (76%), Positives = 369/434 (86%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+S WD+ SWTL Y+RH+ GY+ L+KAL M PDDVI+ VK+SGLRGRGGAGF Sbjct 23 LAPVLSAFWDEDRSWTLDVYRRHE---GYEGLRKALAMSPDDVIAYVKESGLRGRGGAGF 79 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++IA YAIR Sbjct 80 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIR 135 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGEVVPVLRRLH+AV EAYAAG+LG N+ GSG DL++ VHAGAGAYICGEET Sbjct 136 SSHAFIYLRGEVVPVLRRLHSAVREAYAAGYLGENVLGSGLDLDITVHAGAGAYICGEET 195 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRSMGSEKS Sbjct 196 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILKNGKDWFRSMGSEKS 255 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHV PGQYEAPLGITLR+LLD +GG+R GHRLKFWTPGGSSTP+ TDEHL Sbjct 256 PGFTLYSLSGHVAGPGQYEAPLGITLRQLLDMSGGMRPGHRLKFWTPGGSSTPMFTDEHL 315 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 316 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 375 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR EY H+ G Sbjct 376 QLLRDIEAGKGRMTDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRAEYEEHITGR 435 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 436 GCPFDPAKSTAWAD 449 >gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S] gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S] Length=688 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/438 (81%), Positives = 383/438 (88%), Gaps = 4/438 (0%) Query 5 ATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGG 64 ATPLTPV+S HWD+ SWTL Y HD GY AL+KAL M PD+VI VKD+GLRGRGG Sbjct 244 ATPLTPVLSSHWDEDRSWTLDAYHGHD---GYTALRKALRMNPDEVIQTVKDAGLRGRGG 300 Query 65 AGFATGTKWSFIPQGD-TGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 123 AGF TG KWSFIPQ T AKPHYLVVNADESEPGTCKDIPLM ATPH LIEGV+IAA Sbjct 301 AGFPTGMKWSFIPQDPATDGTAKPHYLVVNADESEPGTCKDIPLMFATPHTLIEGVVIAA 360 Query 124 YAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYIC 183 YAIRA AFVYVRGEVVPVLRRL AVAEAY AG+LGR+I GSG+DL++VVHAGAGAYIC Sbjct 361 YAIRAAQAFVYVRGEVVPVLRRLQAAVAEAYDAGYLGRDILGSGYDLDIVVHAGAGAYIC 420 Query 184 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243 GEETALLDSLEGRRGQPRLRPPFPAVAGLY PTV+NNVE+IASVP IIL G +WFR MG Sbjct 421 GEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIILRGPEWFRGMG 480 Query 244 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 303 SE SPGFTLYSLSGHVTRPGQYEAPLG+TLR+LLD AGGVRAGHRLKFWTPGGSSTPLLT Sbjct 481 SEASPGFTLYSLSGHVTRPGQYEAPLGVTLRQLLDVAGGVRAGHRLKFWTPGGSSTPLLT 540 Query 304 DEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGT 363 DEHLDVPLDYEGV AGSMLGTKAL+IFDETTC+VR V RWT+FY HESCGKCTPCREGT Sbjct 541 DEHLDVPLDYEGVAGAGSMLGTKALQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGT 600 Query 364 FWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAH 423 +WL +I ERLE G GS ED++KLLD+SD+ILGKSFCALGDGAASP+MSS+K+FRDEY+AH Sbjct 601 YWLVQILERLERGEGSAEDLEKLLDVSDTILGKSFCALGDGAASPIMSSLKYFRDEYVAH 660 Query 424 VEGGGCPFDPRDSMLVAN 441 V G GCPFDP S LVA Sbjct 661 VGGRGCPFDPDASALVAT 678 >gi|302559102|ref|ZP_07311444.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus Tu4000] gi|302476720|gb|EFL39813.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus Tu4000] Length=449 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/434 (76%), Positives = 368/434 (85%), Gaps = 7/434 (1%) Query 8 LTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGF 67 L PV+S WD+ E+WTL Y+RH+ GY+ L+KAL M PDDVI+ VK+SGLRGRGGAGF Sbjct 17 LAPVLSAFWDEDEAWTLDVYRRHE---GYEGLRKALAMSPDDVIAYVKESGLRGRGGAGF 73 Query 68 ATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIR 127 TG KW FIPQGD KPHYLVVNADESEPGTCKDIPL+ A PH LIEG++IA YAIR Sbjct 74 PTGMKWQFIPQGD----GKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIR 129 Query 128 AHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEET 187 + HAF+Y+RGEVVPVLRRLH AV EA AGFLG N+ GSG DLEL VHAGAGAYICGEET Sbjct 130 SSHAFIYLRGEVVPVLRRLHEAVREAREAGFLGENVLGSGLDLELTVHAGAGAYICGEET 189 Query 188 ALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKS 247 ALLDSLEGRRGQPRLRPPFPAVAGLY CPTV+NNVE+IASVP+I+ G DWFRSMGSEKS Sbjct 190 ALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAIMNRGKDWFRSMGSEKS 249 Query 248 PGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHL 307 PGFTLYSLSGHV PGQYEAPLGITLR+LL+ +GG+R GHRLKFWTPGGSSTP+ TDEHL Sbjct 250 PGFTLYSLSGHVASPGQYEAPLGITLRQLLEMSGGMRPGHRLKFWTPGGSSTPMFTDEHL 309 Query 308 DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLD 367 DVPLDYEGVGAAGSMLGTKAL+ FDETTCVVRAV RWTEFY HESCGKCTPCREGT+WL Sbjct 310 DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLV 369 Query 368 KIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGG 427 ++ +E G+G D+DKL DI+D+I GKSFCALGDGAASP+ SS+K+FR+EY H+ G Sbjct 370 QLLRDIEAGKGQMADLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGR 429 Query 428 GCPFDPRDSMLVAN 441 GCPFDP S A+ Sbjct 430 GCPFDPAKSTAWAD 443 >gi|256396787|ref|YP_003118351.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila DSM 44928] gi|256363013|gb|ACU76510.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila DSM 44928] Length=441 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/437 (76%), Positives = 370/437 (85%), Gaps = 7/437 (1%) Query 5 ATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGG 64 A LTPV+SR W D E WTLA YQR D GY A+++AL M PD+VI +VKDSGLRGRGG Sbjct 2 APELTPVLSRGWLDSEPWTLAGYQRRD---GYTAVKQALRMHPDEVIQLVKDSGLRGRGG 58 Query 65 AGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAY 124 AGF TG KW FIPQ D KPHYLVVNADESEPGTCKDIP M+A PH L+EGVIIA Y Sbjct 59 AGFPTGMKWGFIPQND----GKPHYLVVNADESEPGTCKDIPFMMANPHELVEGVIIACY 114 Query 125 AIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICG 184 AIRA HAF+YVRGEV+ VLRRL AV EAY AGFLG+ + G+ FDLEL VHAGAGAYICG Sbjct 115 AIRASHAFIYVRGEVLHVLRRLQAAVREAYDAGFLGKGVFGTDFDLELTVHAGAGAYICG 174 Query 185 EETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGS 244 EETALLDSLEG+RGQPRLRPPFPAVAGLY PT +NNVE+I SVP+I+ G+DWF+ MGS Sbjct 175 EETALLDSLEGKRGQPRLRPPFPAVAGLYASPTCVNNVESIGSVPAIVRNGVDWFKGMGS 234 Query 245 EKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTD 304 EKSPGFTLYSLSGHV PGQYEAPLGITLRELLDYAGGVR GHRLKFWTPGGSSTP+ T+ Sbjct 235 EKSPGFTLYSLSGHVKHPGQYEAPLGITLRELLDYAGGVRPGHRLKFWTPGGSSTPMFTE 294 Query 305 EHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTF 364 EHLDVPLDYEGVGAAGSMLGTKAL+IFDETTCVVRA RWTEFY HESCGKCTPCREGT+ Sbjct 295 EHLDVPLDYEGVGAAGSMLGTKALQIFDETTCVVRAALRWTEFYAHESCGKCTPCREGTY 354 Query 365 WLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV 424 WL +I +R+E G G+ +D+ KLLD+ D+I+GK+FCALGDGAA+P+ SS+K+FRDEYL H Sbjct 355 WLVQILKRMEKGEGTEDDLGKLLDLCDNIVGKAFCALGDGAAAPIQSSLKYFRDEYLEHF 414 Query 425 EGGGCPFDPRDSMLVAN 441 E GGCPFDP S + A+ Sbjct 415 ERGGCPFDPSLSTVWAD 431 >gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] Length=688 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/438 (81%), Positives = 382/438 (88%), Gaps = 4/438 (0%) Query 5 ATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGG 64 ATPLTPV+S HWD+ SWTL Y HD GY AL+KAL M PD+VI VKD+GLRGRGG Sbjct 244 ATPLTPVLSSHWDEDRSWTLDAYHGHD---GYTALRKALRMNPDEVIQTVKDAGLRGRGG 300 Query 65 AGFATGTKWSFIPQGD-TGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAA 123 AGF TG KWSFIPQ T AKPHYLVVNADESEPGTCKDIPLM ATPH LIEGV+IAA Sbjct 301 AGFPTGMKWSFIPQDPATDGTAKPHYLVVNADESEPGTCKDIPLMFATPHTLIEGVVIAA 360 Query 124 YAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYIC 183 YAIRA AFVYVRGEVVPVLRRL AVAEAY AG+LGR+I GSG+DL++VVHAGAGAYIC Sbjct 361 YAIRAAQAFVYVRGEVVPVLRRLQAAVAEAYDAGYLGRDILGSGYDLDIVVHAGAGAYIC 420 Query 184 GEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243 GEETALLDSLEGRRGQPRLRPPFPAVAGLY PTV+NNVE+IASVP IIL G +WFR MG Sbjct 421 GEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIILRGPEWFRGMG 480 Query 244 SEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLT 303 SE SPGFTLYSLSGHVTRPGQYEAPLGITLR+LLD AGGVRAGHRLKFWTPGGSSTPLLT Sbjct 481 SEASPGFTLYSLSGHVTRPGQYEAPLGITLRQLLDVAGGVRAGHRLKFWTPGGSSTPLLT 540 Query 304 DEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGT 363 DEHLDVPLDYEGV AGSMLGTKAL+IFDETTC+VR V RWT+FY HESCGKCTPCREGT Sbjct 541 DEHLDVPLDYEGVAGAGSMLGTKALQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGT 600 Query 364 FWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAH 423 +WL +I ERLE G GS ED++KLLD+SD+ILGKSFCALGDGAASP+MSS+K+FRDEY+AH Sbjct 601 YWLVQILERLERGEGSVEDLEKLLDVSDTILGKSFCALGDGAASPIMSSLKYFRDEYVAH 660 Query 424 VEGGGCPFDPRDSMLVAN 441 G GCPFDP S LVA Sbjct 661 AGGRGCPFDPDASALVAT 678 Lambda K H 0.320 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 918695148028 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40