BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3154 Length=262 Score E Sequences producing significant alignments: (Bits) Value gi|15610290|ref|NP_217670.1| NADH dehydrogenase subunit J [Mycob... 515 3e-144 gi|326902622|gb|EGE49555.1| NADH dehydrogenase subunit I J nuoJ ... 514 4e-144 gi|340628130|ref|YP_004746582.1| putative NADH dehydrogenase I s... 512 2e-143 gi|118617955|ref|YP_906287.1| NADH dehydrogenase subunit J [Myco... 448 3e-124 gi|296169181|ref|ZP_06850835.1| NADH-quinone oxidoreductase subu... 433 1e-119 gi|254819281|ref|ZP_05224282.1| NADH dehydrogenase subunit J [My... 431 6e-119 gi|118465874|ref|YP_883194.1| NADH dehydrogenase subunit J [Myco... 429 2e-118 gi|41409308|ref|NP_962144.1| NADH dehydrogenase subunit J [Mycob... 427 6e-118 gi|240169661|ref|ZP_04748320.1| NADH dehydrogenase subunit J [My... 424 8e-117 gi|342861062|ref|ZP_08717711.1| NADH:ubiquinone oxidoreductase s... 422 2e-116 gi|108798541|ref|YP_638738.1| NADH dehydrogenase subunit J [Myco... 346 2e-93 gi|118472606|ref|YP_886415.1| NADH dehydrogenase subunit J [Myco... 342 3e-92 gi|120402874|ref|YP_952703.1| NADH dehydrogenase subunit J [Myco... 338 4e-91 gi|333991508|ref|YP_004524122.1| NADH dehydrogenase I (chain J) ... 337 1e-90 gi|315445438|ref|YP_004078317.1| NADH dehydrogenase subunit J [M... 325 5e-87 gi|145225069|ref|YP_001135747.1| NADH dehydrogenase subunit J [M... 322 4e-86 gi|111022881|ref|YP_705853.1| NADH dehydrogenase subunit J [Rhod... 320 1e-85 gi|289769825|ref|ZP_06529203.1| NuoJ [Streptomyces lividans TK24... 313 2e-83 gi|262200412|ref|YP_003271620.1| NADH-ubiquinone/plastoquinone o... 312 3e-83 gi|226365389|ref|YP_002783172.1| NADH dehydrogenase subunit J [R... 311 8e-83 gi|343926367|ref|ZP_08765872.1| NADH-quinone oxidoreductase chai... 311 9e-83 gi|21222954|ref|NP_628733.1| NADH dehydrogenase subunit J [Strep... 310 1e-82 gi|29831389|ref|NP_826023.1| NADH dehydrogenase subunit J [Strep... 309 2e-82 gi|294630805|ref|ZP_06709365.1| NADH dehydrogenase I, J subunit ... 308 6e-82 gi|169629229|ref|YP_001702878.1| NADH dehydrogenase subunit J [M... 308 7e-82 gi|297192778|ref|ZP_06910176.1| NADH dehydrogenase subunit J [St... 306 2e-81 gi|302553435|ref|ZP_07305777.1| NADH dehydrogenase subunit J [St... 303 1e-80 gi|337767478|emb|CCB76189.1| NuoJ, NADH dehydrogenase subunit [S... 303 2e-80 gi|290958251|ref|YP_003489433.1| NADH dehydrogenase subunit NuoJ... 302 3e-80 gi|291451998|ref|ZP_06591388.1| NADH dehydrogenase subunit J [St... 300 2e-79 gi|291437929|ref|ZP_06577319.1| NADH dehydrogenase subunit J [St... 299 3e-79 gi|297201631|ref|ZP_06919028.1| NADH dehydrogenase subunit J [St... 298 7e-79 gi|54024628|ref|YP_118870.1| NADH dehydrogenase subunit J [Nocar... 297 1e-78 gi|333922087|ref|YP_004495668.1| NADH-ubiquinone/plastoquinone o... 296 2e-78 gi|302559098|ref|ZP_07311440.1| NADH dehydrogenase I, J subunit ... 295 4e-78 gi|329935988|ref|ZP_08285788.1| NADH dehydrogenase subunit J [St... 295 5e-78 gi|312139317|ref|YP_004006653.1| NADH dehydrogenase (quinone) ch... 295 5e-78 gi|328884321|emb|CCA57560.1| NADH-ubiquinone oxidoreductase chai... 293 2e-77 gi|297159517|gb|ADI09229.1| NADH dehydrogenase subunit J [Strept... 292 4e-77 gi|320009195|gb|ADW04045.1| NADH-ubiquinone/plastoquinone oxidor... 291 6e-77 gi|294814403|ref|ZP_06773046.1| NADH-quinone oxidoreductase subu... 291 7e-77 gi|254391146|ref|ZP_05006353.1| NADH dehydrogenase subunit J [St... 291 7e-77 gi|302543435|ref|ZP_07295777.1| NADH dehydrogenase I, J subunit ... 291 7e-77 gi|254382433|ref|ZP_04997792.1| NADH dehydrogenase subunit J [St... 290 2e-76 gi|302536177|ref|ZP_07288519.1| NADH dehydrogenase subunit J [St... 288 4e-76 gi|345008477|ref|YP_004810831.1| NADH-ubiquinone/plastoquinone o... 288 4e-76 gi|311897899|dbj|BAJ30307.1| putative NADH-quinone oxidoreductas... 288 6e-76 gi|345001416|ref|YP_004804270.1| NADH-ubiquinone/plastoquinone o... 287 1e-75 gi|326382754|ref|ZP_08204444.1| NADH:ubiquinone oxidoreductase s... 287 1e-75 gi|182436768|ref|YP_001824487.1| NADH dehydrogenase subunit J [S... 283 2e-74 >gi|15610290|ref|NP_217670.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis H37Rv] gi|15842730|ref|NP_337767.1| NADH dehydrogenase subunit J [Mycobacterium tuberculosis CDC1551] gi|31794330|ref|NP_856823.1| NADH dehydrogenase subunit J [Mycobacterium bovis AF2122/97] 70 more sequence titles Length=262 Score = 515 bits (1326), Expect = 3e-144, Method: Compositional matrix adjust. Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM Sbjct 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL Sbjct 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 Query 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE Sbjct 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 Query 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR Sbjct 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 Query 241 GADGLQTPSPGAVSGSLEGGAS 262 GADGLQTPSPGAVSGSLEGGAS Sbjct 241 GADGLQTPSPGAVSGSLEGGAS 262 >gi|326902622|gb|EGE49555.1| NADH dehydrogenase subunit I J nuoJ [Mycobacterium tuberculosis W-148] Length=262 Score = 514 bits (1324), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 262/262 (100%), Gaps = 0/262 (0%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLA+NAVYSAMFLAMTMIILAVFYM Sbjct 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAINAVYSAMFLAMTMIILAVFYM 60 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL Sbjct 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 Query 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE Sbjct 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 Query 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR Sbjct 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 Query 241 GADGLQTPSPGAVSGSLEGGAS 262 GADGLQTPSPGAVSGSLEGGAS Sbjct 241 GADGLQTPSPGAVSGSLEGGAS 262 >gi|340628130|ref|YP_004746582.1| putative NADH dehydrogenase I subunit J NuoJ [Mycobacterium canettii CIPT 140010059] gi|340006320|emb|CCC45499.1| putative NADH dehydrogenase I (chain J) NUOJ (NADH-ubiquinone oxidoreductase chain J) [Mycobacterium canettii CIPT 140010059] Length=262 Score = 512 bits (1319), Expect = 2e-143, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MTAVLASDVIVRTSTGEAVMFWVL ALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM Sbjct 1 MTAVLASDVIVRTSTGEAVMFWVLGALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL Sbjct 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 Query 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE Sbjct 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 Query 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR Sbjct 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 Query 241 GADGLQTPSPGAVSGSLEGGAS 262 GADGLQTPSPGAVSGSLEGGAS Sbjct 241 GADGLQTPSPGAVSGSLEGGAS 262 >gi|118617955|ref|YP_906287.1| NADH dehydrogenase subunit J [Mycobacterium ulcerans Agy99] gi|183981489|ref|YP_001849780.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium marinum M] gi|118570065|gb|ABL04816.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium ulcerans Agy99] gi|183174815|gb|ACC39925.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium marinum M] Length=262 Score = 448 bits (1153), Expect = 3e-124, Method: Compositional matrix adjust. Identities = 223/251 (89%), Positives = 237/251 (95%), Gaps = 0/251 (0%) Query 5 LASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDA 64 LA+D I TSTGEAV FW+L ALAL+GA+GVV+AVNAVYSAMFLAMTMIILAVFYM QDA Sbjct 9 LAADTITVTSTGEAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILAVFYMIQDA 68 Query 65 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTI 124 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAA++ GVGFGVLLI+ I Sbjct 69 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128 Query 125 GQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER 184 G VA GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRERFER Sbjct 129 GNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188 Query 185 RKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRGADG 244 RK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TRGADG Sbjct 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRGADG 248 Query 245 LQTPSPGAVSG 255 LQTPSP A++G Sbjct 249 LQTPSPEAITG 259 >gi|296169181|ref|ZP_06850835.1| NADH-quinone oxidoreductase subunit J [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896160|gb|EFG75826.1| NADH-quinone oxidoreductase subunit J [Mycobacterium parascrofulaceum ATCC BAA-614] Length=278 Score = 433 bits (1114), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 218/258 (85%), Positives = 235/258 (92%), Gaps = 0/258 (0%) Query 5 LASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDA 64 +AS+ I RTSTGEAV FWVL ALAL+GA+GVVL+VNAVYSAMFLAMTMIILAVFYM QDA Sbjct 21 VASETIARTSTGEAVAFWVLGALALVGAIGVVLSVNAVYSAMFLAMTMIILAVFYMIQDA 80 Query 65 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTI 124 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETL GQR+AAVL GVGFGVLLI+ I Sbjct 81 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLHGQRIAAVLAGVGFGVLLIAAI 140 Query 125 GQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER 184 G AT GFAGLT ANANGNVEGLAALIFSRY+WAFELTSALLITAA+GAMVLAHRERFER Sbjct 141 GSGATGGFAGLTAANANGNVEGLAALIFSRYVWAFELTSALLITAAIGAMVLAHRERFER 200 Query 185 RKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRGADG 244 RKTQRELSQERF+PGGHPTP+P+PGVYARHNAVD+AALLPDGSYSELSV +LR+RGADG Sbjct 201 RKTQRELSQERFQPGGHPTPMPSPGVYARHNAVDIAALLPDGSYSELSVSPILRSRGADG 260 Query 245 LQTPSPGAVSGSLEGGAS 262 +TPS A +GG S Sbjct 261 RETPSRQASPSLSQGGKS 278 >gi|254819281|ref|ZP_05224282.1| NADH dehydrogenase subunit J [Mycobacterium intracellulare ATCC 13950] Length=274 Score = 431 bits (1108), Expect = 6e-119, Method: Compositional matrix adjust. Identities = 218/252 (87%), Positives = 230/252 (92%), Gaps = 0/252 (0%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 M + A D I RTSTGEAV FWVL ALA++GA+GVVLAVNAVYSAMFLAMTMIILAVFYM Sbjct 13 MASSFAHDTIARTSTGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYM 72 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 QDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESL+ETLRGQRVAAV GVGFG+LL Sbjct 73 IQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGILL 132 Query 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 I+ IG VAT GFAGLT ANA GNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE Sbjct 133 IAAIGDVATGGFAGLTTANAAGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 192 Query 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 RFERRKTQRELSQERF+PGGHPTPLP PGVYARHNAVDVAALLPDGSYS+LSV ML++R Sbjct 193 RFERRKTQRELSQERFQPGGHPTPLPGPGVYARHNAVDVAALLPDGSYSKLSVSPMLQSR 252 Query 241 GADGLQTPSPGA 252 GADG +T SP A Sbjct 253 GADGKKTQSPEA 264 >gi|118465874|ref|YP_883194.1| NADH dehydrogenase subunit J [Mycobacterium avium 104] gi|254776464|ref|ZP_05217980.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. avium ATCC 25291] gi|118167161|gb|ABK68058.1| NADH dehydrogenase subunit j [Mycobacterium avium 104] gi|336459337|gb|EGO38280.1| NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Mycobacterium avium subsp. paratuberculosis S397] Length=274 Score = 429 bits (1103), Expect = 2e-118, Method: Compositional matrix adjust. Identities = 217/257 (85%), Positives = 231/257 (90%), Gaps = 0/257 (0%) Query 6 ASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDAL 65 + D IVRTSTGEAV FWVL ALA++GA+GVVLAVNAVYSAMFLAMTMIILAVFYM QDAL Sbjct 18 SQDTIVRTSTGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDAL 77 Query 66 FLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIG 125 FLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAV GVGFG+LLI+ +G Sbjct 78 FLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVAAGVGFGILLIAAVG 137 Query 126 QVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERR 185 VA+ GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERR Sbjct 138 NVASGGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERR 197 Query 186 KTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRGADGL 245 KTQRELSQERFR GGHPTPLPNPGVYARHNAVDVAALLPDGSYS+LSV +L++RG DG Sbjct 198 KTQRELSQERFRAGGHPTPLPNPGVYARHNAVDVAALLPDGSYSKLSVSPILQSRGGDGK 257 Query 246 QTPSPGAVSGSLEGGAS 262 +P +GGAS Sbjct 258 DVAAPEPSPSLSQGGAS 274 >gi|41409308|ref|NP_962144.1| NADH dehydrogenase subunit J [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398128|gb|AAS05758.1| NuoJ [Mycobacterium avium subsp. paratuberculosis K-10] Length=274 Score = 427 bits (1099), Expect = 6e-118, Method: Compositional matrix adjust. Identities = 216/257 (85%), Positives = 231/257 (90%), Gaps = 0/257 (0%) Query 6 ASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDAL 65 + D IVRTSTGEAV FWVL ALA++GA+GVVLAVNAVYSAMFLAMTMIILAVFYM QDAL Sbjct 18 SQDTIVRTSTGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILAVFYMIQDAL 77 Query 66 FLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIG 125 FLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESL+ETLRGQRVAAV GVGFG+LLI+ +G Sbjct 78 FLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGFGILLIAAVG 137 Query 126 QVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERR 185 VA+ GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERR Sbjct 138 NVASGGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERR 197 Query 186 KTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRGADGL 245 KTQRELSQERFR GGHPTPLPNPGVYARHNAVDVAALLPDGSYS+LSV +L++RG DG Sbjct 198 KTQRELSQERFRAGGHPTPLPNPGVYARHNAVDVAALLPDGSYSKLSVSPILQSRGGDGK 257 Query 246 QTPSPGAVSGSLEGGAS 262 +P +GGAS Sbjct 258 DVAAPEPSPSLSQGGAS 274 >gi|240169661|ref|ZP_04748320.1| NADH dehydrogenase subunit J [Mycobacterium kansasii ATCC 12478] Length=264 Score = 424 bits (1089), Expect = 8e-117, Method: Compositional matrix adjust. Identities = 215/258 (84%), Positives = 230/258 (90%), Gaps = 6/258 (2%) Query 5 LASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDA 64 LA D IVRTSTGEAV FW+L ALAL+GA+ VVLAVNAVYSAMFLAMTMIILAVFYM QDA Sbjct 13 LAQDTIVRTSTGEAVTFWILGALALIGALAVVLAVNAVYSAMFLAMTMIILAVFYMVQDA 72 Query 65 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTI 124 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAV TG+GFG+LL+ I Sbjct 73 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVGTGIGFGILLVGGI 132 Query 125 GQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER 184 G VAT GFAGLT ANANGNVEGLAALIF RYLWAFELTSALLITAA+GAMVLAHRERFER Sbjct 133 GNVATGGFAGLTAANANGNVEGLAALIFFRYLWAFELTSALLITAAIGAMVLAHRERFER 192 Query 185 RKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRGADG 244 RKTQRELS+ERFRPGGHPTP+PNPGVYAR NAVDVAA LPDG+YSELSV +LR+RGADG Sbjct 193 RKTQRELSEERFRPGGHPTPMPNPGVYARRNAVDVAARLPDGTYSELSVSSILRSRGADG 252 Query 245 LQTPSPGAVSGSLEGGAS 262 T +++GG S Sbjct 253 TATAD------TVKGGTS 264 >gi|342861062|ref|ZP_08717711.1| NADH:ubiquinone oxidoreductase subunit J [Mycobacterium colombiense CECT 3035] gi|342131506|gb|EGT84776.1| NADH:ubiquinone oxidoreductase subunit J [Mycobacterium colombiense CECT 3035] Length=274 Score = 422 bits (1085), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 209/243 (87%), Positives = 223/243 (92%), Gaps = 0/243 (0%) Query 5 LASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDA 64 A D IVRTSTGEAV FWVL LA++GA+GVV AVNAVYSAMFLAMTMIILA+FYM QDA Sbjct 15 FAQDTIVRTSTGEAVAFWVLGVLAVIGAIGVVTAVNAVYSAMFLAMTMIILAIFYMIQDA 74 Query 65 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTI 124 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQR+A V GVGFG+LLI+ I Sbjct 75 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRIAGVAAGVGFGILLIAAI 134 Query 125 GQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER 184 G + T GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER Sbjct 135 GNLTTGGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER 194 Query 185 RKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRGADG 244 RKTQRELSQERFR GGHPTP+P+PGVYARHNAVDVAALLPDGSYS+LSV ML++RGADG Sbjct 195 RKTQRELSQERFRSGGHPTPMPSPGVYARHNAVDVAALLPDGSYSKLSVSPMLQSRGADG 254 Query 245 LQT 247 +T Sbjct 255 KKT 257 >gi|108798541|ref|YP_638738.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS] gi|119867641|ref|YP_937593.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS] gi|126434139|ref|YP_001069830.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS] gi|108768960|gb|ABG07682.1| NADH dehydrogenase subunit J [Mycobacterium sp. MCS] gi|119693730|gb|ABL90803.1| NADH dehydrogenase subunit J [Mycobacterium sp. KMS] gi|126233939|gb|ABN97339.1| NADH dehydrogenase subunit J [Mycobacterium sp. JLS] Length=249 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 175/237 (74%), Positives = 203/237 (86%), Gaps = 0/237 (0%) Query 4 VLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQD 63 VLA+D RTST EAV+FW+L +AL+GA+GVV A AVYSA+FLA TMI LAV Y+AQ+ Sbjct 2 VLAADGAARTSTSEAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQE 61 Query 64 ALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLIST 123 ALFLGVVQ+VVYTGAVMMLFLFVLML+GVD++ESL ET+RGQRVAA+ GVGFGVLLI+ Sbjct 62 ALFLGVVQIVVYTGAVMMLFLFVLMLVGVDNSESLVETIRGQRVAAIAVGVGFGVLLIAG 121 Query 124 IGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFE 183 IG V+T GF GL AN++GNVEGLAALIF+RYLWAFELT ALLITAA+GAMVLAHRERFE Sbjct 122 IGTVSTSGFTGLPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFE 181 Query 184 RRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 RKTQRELS ERF+ GGH TP+PNPGVYARHNAVD+ LPDGS ++ SV +L+ R Sbjct 182 HRKTQRELSIERFQDGGHATPMPNPGVYARHNAVDMPGRLPDGSGAKTSVSTILQPR 238 >gi|118472606|ref|YP_886415.1| NADH dehydrogenase subunit J [Mycobacterium smegmatis str. MC2 155] gi|118173893|gb|ABK74789.1| NADH dehydrogenase subunit j [Mycobacterium smegmatis str. MC2 155] Length=252 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 171/229 (75%), Positives = 196/229 (86%), Gaps = 0/229 (0%) Query 12 RTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQ 71 RTST EAV+FWV+ +AL+GA+GVV A AVYSA+FLA TMI LAV Y+AQDA FLGVVQ Sbjct 14 RTSTSEAVVFWVVGTVALVGAIGVVAARKAVYSAVFLACTMISLAVLYIAQDAPFLGVVQ 73 Query 72 VVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRG 131 +VVYTGAVMMLFLFVLMLIGVD ESL ET++G R+AA++ G GFG+L+I+ IG V+ G Sbjct 74 IVVYTGAVMMLFLFVLMLIGVDLTESLVETIKGHRIAALIAGAGFGILVIAGIGNVSVAG 133 Query 132 FAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQREL 191 F+GL AN+ GNVEGLAALIF+RYLWAFELTSALLITAA+GAMVLAHRERFERRKTQREL Sbjct 134 FSGLAAANSGGNVEGLAALIFTRYLWAFELTSALLITAALGAMVLAHRERFERRKTQREL 193 Query 192 SQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 + ERF+ GGHPTPLPNPGVYARHN+VDV A LPDGS S LSV +L R Sbjct 194 AIERFQTGGHPTPLPNPGVYARHNSVDVPARLPDGSESPLSVSTILPHR 242 >gi|120402874|ref|YP_952703.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1] gi|119955692|gb|ABM12697.1| NADH dehydrogenase subunit J [Mycobacterium vanbaalenii PYR-1] Length=241 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 170/225 (76%), Positives = 194/225 (87%), Gaps = 0/225 (0%) Query 16 GEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVY 75 GEAV+FWV + +++ GA+GVV A AVYSA+ LA TMI LAV Y+AQDA FLGVVQ+VVY Sbjct 2 GEAVLFWVFAVVSVTGALGVVAAPKAVYSAISLATTMIALAVLYIAQDAPFLGVVQIVVY 61 Query 76 TGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGL 135 TGAVMMLFLFVLMLIGVDS+ESL ETLRGQRVAA++ G+GFGVLL++ +G V+ GF GL Sbjct 62 TGAVMMLFLFVLMLIGVDSSESLVETLRGQRVAAIVVGLGFGVLLVAGVGNVSATGFVGL 121 Query 136 TVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQER 195 AN +GNVEGLAALIF++YLWAFELT ALLITAA+GAMVLAHRERFERRKTQREL+ ER Sbjct 122 DQANEDGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRERFERRKTQRELAAER 181 Query 196 FRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 F PGGHPT LPNPGVYARHNAVDV A LPDGS SELSV +L+ R Sbjct 182 FAPGGHPTTLPNPGVYARHNAVDVPARLPDGSGSELSVSAILQVR 226 >gi|333991508|ref|YP_004524122.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium sp. JDM601] gi|333487476|gb|AEF36868.1| NADH dehydrogenase I (chain J) NuoJ (NADH- ubiquinone oxidoreductase chain J) [Mycobacterium sp. JDM601] Length=281 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 180/253 (72%), Positives = 200/253 (80%), Gaps = 11/253 (4%) Query 3 AVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQ 62 A+LASD++VRTSTGEAV FW+L ALAL+GAVGVV A AVYSA+FLAMTM+ LAVFY Q Sbjct 4 ALLASDIVVRTSTGEAVTFWILGALALVGAVGVVTAAKAVYSALFLAMTMLSLAVFYFVQ 63 Query 63 DALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLIS 122 DA+FLGVVQ+VVYTGAVMMLFLFV+MLIGVDSAESL ETLRGQR+A+ L G+GFGVLLI+ Sbjct 64 DAMFLGVVQIVVYTGAVMMLFLFVMMLIGVDSAESLVETLRGQRIASTLAGIGFGVLLIA 123 Query 123 TIG--QVATRGFAGLTVANA-------NGNVEGLAALIFSRYLWAFELTSALLITAAVGA 173 IG + RG + GNVEGLAALIF+RYLWAFELTSALLITA V A Sbjct 124 GIGGATMHLRGIGAPATGGSADSGMVGQGNVEGLAALIFTRYLWAFELTSALLITAVVAA 183 Query 174 MVLAHRERFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSV 233 MVL HRER + R TQRELS RFR G PTPLP PGVYARHNAVD+AA LPDGSYSELSV Sbjct 184 MVLTHRERLQPRLTQRELSILRFRSGNRPTPLPTPGVYARHNAVDIAARLPDGSYSELSV 243 Query 234 PRMLRTR--GADG 244 L+ R GA G Sbjct 244 SDTLQHRWVGATG 256 >gi|315445438|ref|YP_004078317.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1] gi|315263741|gb|ADU00483.1| NADH dehydrogenase subunit J [Mycobacterium sp. Spyr1] Length=239 Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 163/224 (73%), Positives = 189/224 (85%), Gaps = 0/224 (0%) Query 17 EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76 E ++FWV++ +++ GA+GV+ A AVYSAM LA TMI LAV Y+AQ A FLGVVQ+VVYT Sbjct 3 ETILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYT 62 Query 77 GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGLT 136 GAVMMLFLFVLM+IGVDS+ESL ETLRGQR+AA+ G+GFG+LLI+ IG V+ G GL Sbjct 63 GAVMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLD 122 Query 137 VANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQERF 196 AN GNVEGLAALIF++YLWAFELT ALLITAA+GAMVLAHRERF+RRKTQREL+ ERF Sbjct 123 QANGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRERFQRRKTQRELAVERF 182 Query 197 RPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 PGGHPT LPNPGVYARHNAVDV A LPDGS SELSV +L+ R Sbjct 183 APGGHPTTLPNPGVYARHNAVDVPARLPDGSGSELSVSAILQVR 226 >gi|145225069|ref|YP_001135747.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK] gi|145217555|gb|ABP46959.1| NADH dehydrogenase subunit J [Mycobacterium gilvum PYR-GCK] Length=236 Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 162/222 (73%), Positives = 188/222 (85%), Gaps = 0/222 (0%) Query 19 VMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYTGA 78 ++FWV++ +++ GA+GV+ A AVYSAM LA TMI LAV Y+AQ A FLGVVQ+VVYTGA Sbjct 2 ILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYTGA 61 Query 79 VMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGLTVA 138 VMMLFLFVLM+IGVDS+ESL ETLRGQR+AA+ G+GFG+LLI+ IG V+ G GL A Sbjct 62 VMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLDQA 121 Query 139 NANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQERFRP 198 N GNVEGLAALIF++YLWAFELT ALLITAA+GAMVLAHRERF+RRKTQREL+ ERF P Sbjct 122 NGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRERFQRRKTQRELAVERFAP 181 Query 199 GGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 GGHPT LPNPGVYARHNAVDV A LPDGS SELSV +L+ R Sbjct 182 GGHPTTLPNPGVYARHNAVDVPARLPDGSGSELSVSAILQVR 223 >gi|111022881|ref|YP_705853.1| NADH dehydrogenase subunit J [Rhodococcus jostii RHA1] gi|110822411|gb|ABG97695.1| probable NADH dehydrogenase subunit J [Rhodococcus jostii RHA1] Length=269 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 176/258 (69%), Positives = 201/258 (78%), Gaps = 8/258 (3%) Query 5 LASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDA 64 L ++ +TSTGE V FWVL+ +A++GA+GVV A AVYSA+FLA TMIILAVFY+AQ A Sbjct 7 LVAEPFTQTSTGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGA 66 Query 65 LFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTI 124 LFLGVVQ+VVYTGAVMMLFLFVLMLIGVDS+ESL E LRGQRVAA+ G+GFG+LLI I Sbjct 67 LFLGVVQIVVYTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGI 126 Query 125 GQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFER 184 G + F GL ANA GNVEGLA L+F RY+WAFELT ALLITA +GAMVLAHRERFER Sbjct 127 GSASVSAFTGLDQANAAGNVEGLAELVFVRYVWAFELTGALLITATIGAMVLAHRERFER 186 Query 185 RKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR---- 240 RK QRELSQ+R R G TPLP+PGVYARHNAVD+ ALLPDG++SELSV R L R Sbjct 187 RKDQRELSQDRVREGARVTPLPSPGVYARHNAVDIPALLPDGTFSELSVSRSLERRPSLP 246 Query 241 ----GADGLQTPSPGAVS 254 G + TP PGA Sbjct 247 ARALGTADVATPDPGATD 264 >gi|289769825|ref|ZP_06529203.1| NuoJ [Streptomyces lividans TK24] gi|289700024|gb|EFD67453.1| NuoJ [Streptomyces lividans TK24] Length=285 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 155/243 (64%), Positives = 197/243 (82%), Gaps = 2/243 (0%) Query 1 MTAVLASDVIVR--TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVF 58 M+A LA++V + TSTGEAV FW+L +A++GA+ V AV+SA+ LA TMI+LAVF Sbjct 1 MSAQLAAEVTLSAGTSTGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVF 60 Query 59 YMAQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGV 118 Y+A A FLG+VQ+VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L+G+GFG+ Sbjct 61 YLANGAYFLGIVQIVVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGI 120 Query 119 LLISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAH 178 LLI+ IG + F GL ANANGNVEG+A+LIF++Y++AFE+T ALLITAAVGAMVL H Sbjct 121 LLIAGIGNASVSEFTGLAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTH 180 Query 179 RERFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLR 238 RER ER +TQRELS++R R G H PLP PGVYARHNAVD+A LLPDG+ SEL+V + LR Sbjct 181 RERTERARTQRELSEQRIRDGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSKTLR 240 Query 239 TRG 241 RG Sbjct 241 ERG 243 >gi|262200412|ref|YP_003271620.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia bronchialis DSM 43247] gi|262083759|gb|ACY19727.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Gordonia bronchialis DSM 43247] Length=269 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 170/248 (69%), Positives = 195/248 (79%), Gaps = 6/248 (2%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MTA+LA++ + RTSTGEAV FWVL +A+LGA+GVV A AVYSA+FLA TMIILA+FY+ Sbjct 1 MTALLAAE-LTRTSTGEAVQFWVLGGVAVLGALGVVFATKAVYSAIFLATTMIILAIFYV 59 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 AQ ALFLGVVQVVVYTGAVMMLFLFVLMLIGVDS++SL ETLRGQR+AA + G+GFG+LL Sbjct 60 AQGALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRLAAAVIGLGFGILL 119 Query 121 ISTIGQVATRGFAGLTVAN-----ANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMV 175 I+ IG + FAG A +GNVE +A LIF +YLWAFELT ALLITA +GAMV Sbjct 120 IAGIGTASVATFAGAPAAGGSSTAGDGNVEAIAELIFVQYLWAFELTGALLITATLGAMV 179 Query 176 LAHRERFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPR 235 LAHRERF R +QRELS RFR G TPLP+PGVYARHNAVDV A LPDGS + LSV Sbjct 180 LAHRERFGPRMSQRELSVARFRQGIDMTPLPSPGVYARHNAVDVPARLPDGSPARLSVNA 239 Query 236 MLRTRGAD 243 L TR D Sbjct 240 TLVTRDHD 247 >gi|226365389|ref|YP_002783172.1| NADH dehydrogenase subunit J [Rhodococcus opacus B4] gi|226243879|dbj|BAH54227.1| NADH-quinone oxidoreductase chain J [Rhodococcus opacus B4] Length=272 Score = 311 bits (796), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 167/239 (70%), Positives = 194/239 (82%), Gaps = 0/239 (0%) Query 2 TAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMA 61 T L ++ +TSTGE V FWVL+ +A++GA+GVV A AVYSA+FLA TMIILAVFY+A Sbjct 7 TVQLVAEPFTQTSTGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIA 66 Query 62 QDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLI 121 Q A FLGVVQ+VVYTGAVMMLFLFVLMLIGVDS+ESL E LRGQRVAA+ G+GFG+LLI Sbjct 67 QGAPFLGVVQIVVYTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLI 126 Query 122 STIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER 181 G+ + F GL ANA GNV+GLA L+F RY+WAFELT ALLITA +GAMVLAHRER Sbjct 127 GGFGRASVSAFTGLDQANAGGNVQGLAELVFVRYVWAFELTGALLITATIGAMVLAHRER 186 Query 182 FERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 FERRK QRELSQ+R R G TPLP+PGVYARHNAVD+ ALLPDG++S+LSV R L R Sbjct 187 FERRKDQRELSQDRVREGARVTPLPSPGVYARHNAVDIPALLPDGTFSDLSVSRSLDRR 245 >gi|343926367|ref|ZP_08765872.1| NADH-quinone oxidoreductase chain J [Gordonia alkanivorans NBRC 16433] gi|343763605|dbj|GAA12798.1| NADH-quinone oxidoreductase chain J [Gordonia alkanivorans NBRC 16433] Length=267 Score = 311 bits (796), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 170/258 (66%), Positives = 195/258 (76%), Gaps = 11/258 (4%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MT LA +VI RTSTGEAV FWVL +A+ GA+GVV A AVYSA+FLA TMI+LAVFY+ Sbjct 6 MTTTLADEVI-RTSTGEAVQFWVLGVIAVAGALGVVFATKAVYSAIFLATTMIVLAVFYV 64 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 AQ ALFLGVVQVVVYTGAVMMLFLFVLMLIGVDS++SLKETLRGQRVAA++ GVGFGVLL Sbjct 65 AQGALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSSDSLKETLRGQRVAAMIIGVGFGVLL 124 Query 121 ISTIGQVATRGFAGLTVA-----NANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMV 175 I+ IG G T +++ +E +A LIF RYLWAFELT ALLI A +GAMV Sbjct 125 IAGIGNATIAVTTGATAPGALADDSDYGIEAIAELIFVRYLWAFELTGALLIAATLGAMV 184 Query 176 LAHRERFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSV-- 233 LAHRE+F R TQ+ELSQ RFR G + TPLP+PGVYARHNAVDV A LPDGS S+LSV Sbjct 185 LAHREKFGPRLTQKELSQARFRSGINITPLPSPGVYARHNAVDVPARLPDGSPSDLSVNA 244 Query 234 ---PRMLRTRGADGLQTP 248 R LR + + P Sbjct 245 ILAARTLRQKNPQAPENP 262 >gi|21222954|ref|NP_628733.1| NADH dehydrogenase subunit J [Streptomyces coelicolor A3(2)] gi|5042268|emb|CAB44522.1| NuoJ, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] Length=285 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 150/229 (66%), Positives = 188/229 (83%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FW+L +A++GA+ V AV+SA+ LA TMI+LAVFY+A A FLG+VQ+ Sbjct 15 TSTGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYLANGAYFLGIVQI 74 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L+G+GFG+LLI+ IG + F Sbjct 75 VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGILLIAGIGNASVSEF 134 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL ANANGNVEG+A+LIF++Y++AFE+T ALLITAAVGAMVL HRER ER +TQRELS Sbjct 135 TGLAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQRELS 194 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++R R G H PLP PGVYARHNAVD+A LLPDG+ SEL+V + LR RG Sbjct 195 EQRIRDGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSKTLRERG 243 >gi|29831389|ref|NP_826023.1| NADH dehydrogenase subunit J [Streptomyces avermitilis MA-4680] gi|29608504|dbj|BAC72558.1| putative NADH dehydrogenase I chain J (complex I) [Streptomyces avermitilis MA-4680] Length=280 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 157/241 (66%), Positives = 192/241 (80%), Gaps = 3/241 (1%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 M+A LA+ TSTGEA FW+L +A++GA+ VL AV+SA+ LA TMIILAVFY+ Sbjct 1 MSAQLAA---YSTSTGEAFQFWILGTVAVIGALCTVLMKKAVHSALCLAGTMIILAVFYL 57 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 A A FLGVVQ+VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A++ G+GFG LL Sbjct 58 ANGAYFLGVVQIVVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALVCGLGFGTLL 117 Query 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 + IG + + F GL ANANGNVEGLAALIF++Y++AFE+T ALLITAAVGAMVL HRE Sbjct 118 FAGIGNASIKEFDGLGTANANGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRE 177 Query 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 R ER KTQRELS++R R G H PLP PGVYARHNAVD+A LLPDG+ SEL+V + LR R Sbjct 178 RTERAKTQRELSEQRVREGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVNKTLRER 237 Query 241 G 241 G Sbjct 238 G 238 >gi|294630805|ref|ZP_06709365.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14] gi|292834138|gb|EFF92487.1| NADH dehydrogenase I, J subunit [Streptomyces sp. e14] Length=280 Score = 308 bits (789), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 157/241 (66%), Positives = 191/241 (80%), Gaps = 3/241 (1%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MTA LA+ TSTGEA FWVL +A++GA+ V AV+SA+ LA TMIILAVFY+ Sbjct 1 MTAQLAA---YTTSTGEAFQFWVLGTVAVIGALCTVFMRKAVHSALSLAGTMIILAVFYL 57 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 A A FLG+VQ+VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L G+GFG+LL Sbjct 58 ANGAYFLGIVQIVVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILL 117 Query 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180 ++ I + + FAG ANANGNVEGLA+LIF+RY++AFELT ALLITA +GAMVL HRE Sbjct 118 VAGIANASLKDFAGAGKANANGNVEGLASLIFTRYVYAFELTGALLITATIGAMVLTHRE 177 Query 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 R ER KTQREL+++R R G H PLP PGVYARHNAVDVA LLPDG+ SEL+V R LR R Sbjct 178 RTERAKTQRELAEQRVREGKHVPPLPAPGVYARHNAVDVAGLLPDGTPSELTVSRTLRER 237 Query 241 G 241 G Sbjct 238 G 238 >gi|169629229|ref|YP_001702878.1| NADH dehydrogenase subunit J [Mycobacterium abscessus ATCC 19977] gi|169241196|emb|CAM62224.1| NADH-quinone oxidoreductase, J subunit NuoJ [Mycobacterium abscessus] Length=259 Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 161/237 (68%), Positives = 188/237 (80%), Gaps = 0/237 (0%) Query 4 VLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQD 63 VLA++ + RT T E V FWVL A+A+LGA+GV+ A AVYSA+FLAMTM+ILAVF++AQ Sbjct 12 VLAAEGLSRTPTWEGVTFWVLGAIAVLGALGVIAAPKAVYSAIFLAMTMVILAVFFVAQG 71 Query 64 ALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLIST 123 ALFLGV QVVVYTGAVMMLFLFVLM +GVDS++SL ETL GQRV AV G+GFG+L I++ Sbjct 72 ALFLGVAQVVVYTGAVMMLFLFVLMFVGVDSSDSLVETLPGQRVGAVAAGLGFGILAIAS 131 Query 124 IGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFE 183 IG +T F GL AN+ GNVEGLA IF YLWAFELT ALLITA +GAMVLAHRE+ Sbjct 132 IGNASTTVFVGLGQANSRGNVEGLAERIFIDYLWAFELTGALLITATIGAMVLAHREKLG 191 Query 184 RRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240 + QREL+ RF+ G TPLPNPGVYARHNAVDV ALLPDGS+SELSV +L R Sbjct 192 QTGGQRELAIRRFQHGDRATPLPNPGVYARHNAVDVPALLPDGSFSELSVSAVLTPR 248 >gi|297192778|ref|ZP_06910176.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC 25486] gi|197721033|gb|EDY64941.1| NADH dehydrogenase subunit J [Streptomyces pristinaespiralis ATCC 25486] Length=279 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 155/231 (68%), Positives = 186/231 (81%), Gaps = 2/231 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FWVL +A++GA+ +L AV+SA+ LA TMIILAVFY+A A FLGVVQ+ Sbjct 9 TSTGEAVQFWVLGTIAVIGALCTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQI 68 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR A G+GFG+LLI+ IG + + F Sbjct 69 VVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGNASLKNF 128 Query 133 AGLTVANA--NGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRE 190 GL AN+ GNVEGLAALIF++Y++AFE+T ALLITAAVGAMVL HRER ER KTQRE Sbjct 129 NGLGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAKTQRE 188 Query 191 LSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 LS++R R G H PLP PGVYARHNAVD+A LLPDG+ SEL+V R LR RG Sbjct 189 LSEQRVREGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVNRTLRDRG 239 >gi|302553435|ref|ZP_07305777.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM 40736] gi|302471053|gb|EFL34146.1| NADH dehydrogenase subunit J [Streptomyces viridochromogenes DSM 40736] Length=280 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/229 (65%), Positives = 188/229 (83%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FW+L +A++GA+G +L AV+SA+ LA TMIILAVFY+A A FLGVVQ+ Sbjct 10 TSTGEAVQFWILGTVAVIGALGTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVVQI 69 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 +VYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L G+GFG+LL + IG + + F Sbjct 70 IVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGILLFAGIGNASLKEF 129 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 G+ ANA GNV+G+AAL+F+RY++AFE+T ALLITAAVGAMVL HRER ER KTQREL+ Sbjct 130 NGIGQANAGGNVQGIAALLFTRYVFAFEITGALLITAAVGAMVLTHRERTERAKTQRELA 189 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 +ER R G + PLP PGVYARHNAVD+A LLPDG+ S+L+V + LR RG Sbjct 190 EERVREGKYMPPLPAPGVYARHNAVDIAGLLPDGTPSDLTVSKTLRERG 238 >gi|337767478|emb|CCB76189.1| NuoJ, NADH dehydrogenase subunit [Streptomyces cattleya NRRL 8057] Length=285 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 153/229 (67%), Positives = 181/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FW+L +A+LGA+G V AV+SA+ LA TMI+LAVFY+AQ A FLG+VQV Sbjct 3 TSTGEAVQFWLLGVVAVLGALGTVTMRKAVHSALCLAGTMIVLAVFYLAQGAYFLGIVQV 62 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+G+ +A+SLKET++GQR AA L G+GFG+LLI+ +G R F Sbjct 63 VVYTGAIMMLFLFVVMLVGITAADSLKETIKGQRWAAALCGLGFGILLIAGLGNAGVRQF 122 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL ANA GNVEGLA L+F+ Y+WAFE+T ALLITAAVGAMVL HRER E TQRELS Sbjct 123 KGLGQANAGGNVEGLAKLVFTTYVWAFEITGALLITAAVGAMVLTHRERTEHAATQRELS 182 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 + R R G TPLP PGVYARHNAVD+ LLPDG+ SELSV LR RG Sbjct 183 ERRVREGAPVTPLPAPGVYARHNAVDIPGLLPDGTPSELSVNPTLRARG 231 >gi|290958251|ref|YP_003489433.1| NADH dehydrogenase subunit NuoJ [Streptomyces scabiei 87.22] gi|260647777|emb|CBG70882.1| NuoJ, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length=283 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 151/229 (66%), Positives = 183/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEA FWVL +A++GA+ V AV+SA+ LA TM+ILAVFY+A A FLG+VQ+ Sbjct 15 TSTGEAFQFWVLGTVAVIGALCTVFMKRAVHSALCLAGTMVILAVFYLANGAYFLGIVQI 74 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L G GFG+LLI+ IG + F Sbjct 75 VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGAGFGILLIAGIGNASLTEF 134 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 +GL ANA GNVEGLAALIF+ Y++AFELT ALLITAAVGAMVL HRER ER KTQREL+ Sbjct 135 SGLGTANAGGNVEGLAALIFTDYVFAFELTGALLITAAVGAMVLTHRERTERPKTQRELA 194 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++R R G H PLP PGVYARHNAVD+ LLPDG+ SEL+V + LR RG Sbjct 195 EQRVREGKHLPPLPAPGVYARHNAVDIPGLLPDGTPSELTVSKTLRDRG 243 >gi|291451998|ref|ZP_06591388.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] gi|291354947|gb|EFE81849.1| NADH dehydrogenase subunit J [Streptomyces albus J1074] Length=271 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 148/229 (65%), Positives = 182/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FW+L +A+LGA+ VL AV+SA+ LA TMI+LAVFY+A A FLG+VQ+ Sbjct 9 TSTGEAVQFWILGTVAVLGALSTVLMKKAVHSALCLAATMIVLAVFYLANGAYFLGIVQI 68 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR A L +GFG+LLI+ IGQV F Sbjct 69 VVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALAALGFGILLIAGIGQVGISQF 128 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL AN+ GNV+GLAALIF++Y++AFE+T ALLITA VGAM+L HRER ER TQREL+ Sbjct 129 NGLAAANSGGNVQGLAALIFTKYVFAFEITGALLITATVGAMLLTHRERTERASTQRELA 188 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++R R H PLP PGVYARHNAVD+ LLPDG+ SEL+V + LR RG Sbjct 189 EKRVRENTHVPPLPAPGVYARHNAVDIPGLLPDGTPSELTVNKTLRERG 237 >gi|291437929|ref|ZP_06577319.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] gi|291340824|gb|EFE67780.1| NADH dehydrogenase subunit J [Streptomyces ghanaensis ATCC 14672] Length=283 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/229 (65%), Positives = 185/229 (81%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FWVL +A++GA+ V AV+SA+ LA TMI+LAVFY+A A FLG+VQ+ Sbjct 10 TSTGEAVQFWVLGTIAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGIVQI 69 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L G+GFG LLI+ IG + F Sbjct 70 VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGTLLITGIGHASLGEF 129 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 G+ ANANGNVEG+A+LIF+RY++AFE+T LLITAAVGAMVL HRER ER +TQREL+ Sbjct 130 NGIGQANANGNVEGIASLIFTRYVFAFEITGILLITAAVGAMVLTHRERTERARTQRELA 189 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++R R G + PLP PGVYARHNAVD+A LLPDG+ SEL+V + LR RG Sbjct 190 EQRVREGKYLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSKTLRERG 238 >gi|297201631|ref|ZP_06919028.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083] gi|197710997|gb|EDY55031.1| NADH dehydrogenase subunit J [Streptomyces sviceus ATCC 29083] Length=285 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 149/229 (66%), Positives = 182/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEA FWVL +A++GA+ V AV+SA+ LA TMIILAVFY+A A FLGVVQ+ Sbjct 17 TSTGEAFQFWVLGTVAVIGALCTVFMRKAVHSALCLAGTMIILAVFYLANGAYFLGVVQI 76 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SL ET++GQR A+L G+GFG+LL + IG + + F Sbjct 77 VVYTGAIMMLFLFVVMLVGVTAADSLTETIKGQRWLALLCGLGFGILLFAGIGNASLKQF 136 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GLT ANA GNVEGLA LIF++Y++AFE+T ALLITAAVGAMVL HRER ER TQRE++ Sbjct 137 NGLTQANAGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALTQREMA 196 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 + R R G H PLP PGVYARHNAVD+A LLPDG+ SEL+V + LR RG Sbjct 197 ERRVREGKHVPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSKTLRERG 245 >gi|54024628|ref|YP_118870.1| NADH dehydrogenase subunit J [Nocardia farcinica IFM 10152] gi|54016136|dbj|BAD57506.1| putative NADH dehydrogenase I chain J [Nocardia farcinica IFM 10152] Length=274 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 161/249 (65%), Positives = 188/249 (76%), Gaps = 15/249 (6%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MT VLA++ + R STGEAV FW+L+ LA+LGA+G+V A AV+SA+ LA TMI LAV Y+ Sbjct 1 MTLVLAAEPLTRASTGEAVQFWILAPLAVLGALGMVFAAKAVHSAICLAATMIALAVMYI 60 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 AQDALFLGVVQ+VVYTGAVMMLFLFVLML+GVDSAESL+ETLRGQR+AA + G+GFG+LL Sbjct 61 AQDALFLGVVQIVVYTGAVMMLFLFVLMLVGVDSAESLRETLRGQRIAATVVGIGFGLLL 120 Query 121 ISTIG--------QVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVG 172 ++ IG GF G V + LA LIF RY+WAFELT ALLITA +G Sbjct 121 MAGIGIGIRESGVTFPATGFPGRDV------IAELAELIFLRYVWAFELTGALLITATIG 174 Query 173 AMVLAHRERFERRKTQRELSQERFRPGG-HPTPLPNPGVYARHNAVDVAALLPDGSYSEL 231 AMVLAHR+ F R TQRELS+ RFR G TPLP PGVYARHNAVDV A LPDGS+ EL Sbjct 175 AMVLAHRDHFGARTTQRELSRRRFRDGASRATPLPTPGVYARHNAVDVPARLPDGSFEEL 234 Query 232 SVPRMLRTR 240 SV +LR R Sbjct 235 SVSTILRHR 243 >gi|333922087|ref|YP_004495668.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Amycolicicoccus subflavus DQS3-9A1] gi|333484308|gb|AEF42868.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Amycolicicoccus subflavus DQS3-9A1] Length=263 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 153/247 (62%), Positives = 189/247 (77%), Gaps = 7/247 (2%) Query 2 TAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMA 61 +A++ I TSTGEAV FW+L+A+A++GA+GVV + AVYSAMFLAMTMIILA+FY+A Sbjct 6 SALVLGQPITETSTGEAVQFWILAAIAVVGALGVVASKKAVYSAMFLAMTMIILAIFYIA 65 Query 62 QDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLI 121 Q ALFLGVVQVVVYTGAVMMLFLFV+MLIG++S++SL ETLRG R+AAV G+GFG+LL Sbjct 66 QGALFLGVVQVVVYTGAVMMLFLFVVMLIGIESSDSLVETLRGHRIAAVAAGLGFGLLLA 125 Query 122 STIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRER 181 + I + A FAG NV LA L+F RY+WAFELT LLI A +GAMVLAHRE+ Sbjct 126 AGIARAALPTFAGFE--EQENNVPALAELLFVRYVWAFELTGVLLIIATLGAMVLAHREK 183 Query 182 FERRKTQRELSQERFR-----PGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRM 236 F R+TQ+E SQERF+ GGH TPLP+PGVYARHNAV+ A LPDGSY++ SV + Sbjct 184 FTSRRTQKEQSQERFQAWQRGEGGHLTPLPSPGVYARHNAVNQLARLPDGSYAQSSVSEV 243 Query 237 LRTRGAD 243 R + + Sbjct 244 FRKQASS 250 >gi|302559098|ref|ZP_07311440.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000] gi|302476716|gb|EFL39809.1| NADH dehydrogenase I, J subunit [Streptomyces griseoflavus Tu4000] Length=280 Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 148/229 (65%), Positives = 184/229 (81%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEA FWVL +A++GA+ V AV+SA+ LA TMI+LAVFY+A A FLGVVQ+ Sbjct 10 TSTGEAFQFWVLGTVAVIGALCTVFMRRAVHSALCLAGTMIVLAVFYLANGAYFLGVVQI 69 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L G+GFGVLL+ IG + F Sbjct 70 VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLVGGIGNASLSEF 129 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL ANA GNVEGLAAL+F++Y++AFE+T ALLITAAVGAMVL HRER ER +TQREL+ Sbjct 130 NGLGEANAGGNVEGLAALLFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQRELA 189 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++R R G + PLP PGVYARHNAVD+A LLPDG+ S+L+V + LR RG Sbjct 190 EQRVREGKYLPPLPAPGVYARHNAVDIAGLLPDGTPSDLTVSKTLRERG 238 >gi|329935988|ref|ZP_08285788.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045] gi|329304466|gb|EGG48344.1| NADH dehydrogenase subunit J [Streptomyces griseoaurantiacus M045] Length=284 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 149/229 (66%), Positives = 184/229 (81%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FW+L +A++GA+ V AV+SA+ LA TMI+LAVFY+A A FLG+VQ+ Sbjct 22 TSTGEAVQFWILGTVAVIGALCTVFMRRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQI 81 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR A+L G+GFGVLL++ IG + F Sbjct 82 VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGLGFGVLLLAGIGNASLTQF 141 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL+ ANA GNV+GLAALIF++Y++AFE+T ALLITAAVGAMVL HRER ER TQRE+S Sbjct 142 DGLSEANAPGNVQGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALTQREMS 201 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 + R R G H PLP PGVYARHNAVD+A LLPDG+ SEL+V LR RG Sbjct 202 ERRVREGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVNPTLRERG 250 >gi|312139317|ref|YP_004006653.1| NADH dehydrogenase (quinone) chain j nuoj [Rhodococcus equi 103S] gi|325676674|ref|ZP_08156349.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707] gi|311888656|emb|CBH47968.1| NADH dehydrogenase (quinone) chain J NuoJ [Rhodococcus equi 103S] gi|325552529|gb|EGD22216.1| NADH-quinone oxidoreductase subunit J [Rhodococcus equi ATCC 33707] Length=276 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 168/253 (67%), Positives = 199/253 (79%), Gaps = 14/253 (5%) Query 2 TAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMA 61 TA+LA++V RTSTGEAV FW+L A+LGA+GVV A AVYSA+ LAMTMI+LAV Y+A Sbjct 9 TALLAAEVFTRTSTGEAVQFWILGTAAVLGALGVVCAPKAVYSAICLAMTMIVLAVLYIA 68 Query 62 QDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLI 121 Q ALFLGVVQVVVYTGAVMMLFLFVLMLIGVDS++SL ETLRGQR+AAV+ G+GFG+LLI Sbjct 69 QGALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRIAAVVAGLGFGLLLI 128 Query 122 -----STIG--QVATRGFAGLTVAN--ANGNVEGLAALIFSRYLWAFELTSALLITAAVG 172 +T+G + GF GL AN + GNVEG+A L+F RY+W FE+T ALLITA +G Sbjct 129 GGLGNATVGVLRSGEVGFVGLDQANSASGGNVEGIAELVFIRYVWVFEMTGALLITATIG 188 Query 173 AMVLAHRERFERRKTQRELSQERFRPGGHP-----TPLPNPGVYARHNAVDVAALLPDGS 227 AMVLAHRERFERR QRE+S++RFR G TPLP+PGVYARHNAVD+ A LPDG+ Sbjct 189 AMVLAHRERFERRLGQREMSKQRFRDWGADESARVTPLPSPGVYARHNAVDLPARLPDGT 248 Query 228 YSELSVPRMLRTR 240 YS SV R+L R Sbjct 249 YSRESVSRILTPR 261 >gi|328884321|emb|CCA57560.1| NADH-ubiquinone oxidoreductase chain J [Streptomyces venezuelae ATCC 10712] Length=275 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/231 (65%), Positives = 184/231 (80%), Gaps = 2/231 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TS+GEA FWVL +A++GA+ +L AV+SA+ LA TMIILAVFY+A A FLG+VQ+ Sbjct 10 TSSGEAFQFWVLGTVAVIGALCTILMRKAVHSALCLAGTMIILAVFYLANGAYFLGIVQI 69 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKET++GQR AV G+GFG+LL + IG + + F Sbjct 70 VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWWAVACGLGFGILLAAGIGNASLKEF 129 Query 133 AGLTVANA--NGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRE 190 GL AN+ GNVEGLAALIF++Y++AFE+T ALLITAAVGAMVL HRER ER TQRE Sbjct 130 TGLGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAATQRE 189 Query 191 LSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 LS++R R G H PLP PGVYARHNAVD+A LLPDG+ +EL+V + LR RG Sbjct 190 LSEQRVREGKHVPPLPAPGVYARHNAVDIAGLLPDGTPAELTVMQTLRKRG 240 >gi|297159517|gb|ADI09229.1| NADH dehydrogenase subunit J [Streptomyces bingchenggensis BCW-1] Length=312 Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 147/229 (65%), Positives = 181/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FW+L+ +A++GA+G +L AV+SA+ LA TMI+LAVFY+A A FLGVVQ+ Sbjct 9 TSTGEAVQFWILATVAVIGALGTILMRKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQI 68 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR A L G+GFG+LL + IG + + F Sbjct 69 VVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKSF 128 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL AN+ GNVEGLA LIF++Y++AFE+T ALLITAAVGAMVL HRER ER +QRE + Sbjct 129 NGLGQANSGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERALSQREQA 188 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 + R R G PLP PGVYARHNAVDV LLPDG+ +ELSV LR RG Sbjct 189 ERRVRTGTQVPPLPAPGVYARHNAVDVPGLLPDGTPAELSVNPTLRGRG 237 >gi|320009195|gb|ADW04045.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces flavogriseus ATCC 33331] Length=284 Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/228 (67%), Positives = 181/228 (80%), Gaps = 3/228 (1%) Query 16 GEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVY 75 GEAV FW+L +A++GA+ VL AV+SA+ LA TMI+LAVFY+A A FLG+VQVVVY Sbjct 15 GEAVQFWILGTVAVVGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQVVVY 74 Query 76 TGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGL 135 TGA+MMLFLFV+ML+GV +A+SLKETL+GQR A G+GFG+LLI+ IGQ + + F GL Sbjct 75 TGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGQASLQSFNGL 134 Query 136 TVANAN--GNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQ 193 ANA GNVEGLA LIF++Y++AFE+T ALLITA VGAM+L HRER ER KTQRELSQ Sbjct 135 GAANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTHRERTERAKTQRELSQ 194 Query 194 ERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ER R H PLP PGVYARHNAVD+A LLPDG+ SEL+V R LR RG Sbjct 195 ERVRS-SHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVMRTLRQRG 241 >gi|294814403|ref|ZP_06773046.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] gi|326442793|ref|ZP_08217527.1| NADH:ubiquinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] gi|294327002|gb|EFG08645.1| NADH-quinone oxidoreductase subunit J [Streptomyces clavuligerus ATCC 27064] Length=305 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 149/231 (65%), Positives = 183/231 (80%), Gaps = 2/231 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FWVL +A+LGA+ +L AV+SA+ LA TM++LAVFY+A A FLGVVQ+ Sbjct 15 TSTGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQI 74 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR A L G+GFGVLL++ +G + F Sbjct 75 VVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLNEF 134 Query 133 AGLTVANAN--GNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRE 190 GL AN+ GNVEGLAALIF++Y++AFE+T ALLITA VGAMVL HRER E+ +TQRE Sbjct 135 NGLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQRE 194 Query 191 LSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++ER R G PLP PGVYARHNAVD+A LLPDG+ SEL+V R LR RG Sbjct 195 QAEERVRAGVQLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSRTLRERG 245 >gi|254391146|ref|ZP_05006353.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064] gi|197704840|gb|EDY50652.1| NADH dehydrogenase subunit J [Streptomyces clavuligerus ATCC 27064] Length=296 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 149/231 (65%), Positives = 183/231 (80%), Gaps = 2/231 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FWVL +A+LGA+ +L AV+SA+ LA TM++LAVFY+A A FLGVVQ+ Sbjct 6 TSTGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVVQI 65 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR A L G+GFGVLL++ +G + F Sbjct 66 VVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLNEF 125 Query 133 AGLTVANAN--GNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRE 190 GL AN+ GNVEGLAALIF++Y++AFE+T ALLITA VGAMVL HRER E+ +TQRE Sbjct 126 NGLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQRE 185 Query 191 LSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ++ER R G PLP PGVYARHNAVD+A LLPDG+ SEL+V R LR RG Sbjct 186 QAEERVRAGVQLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSRTLRERG 236 >gi|302543435|ref|ZP_07295777.1| NADH dehydrogenase I, J subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461053|gb|EFL24146.1| NADH dehydrogenase I, J subunit [Streptomyces himastatinicus ATCC 53653] Length=295 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 146/225 (65%), Positives = 179/225 (80%), Gaps = 0/225 (0%) Query 17 EAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVYT 76 EAV FWVL +A++GA+ +L AV+SA+ LA TMI+LAVFY+A A FLGVVQ+VVYT Sbjct 16 EAVQFWVLGTVAVIGALCTILMRKAVHSALSLAGTMIVLAVFYLANGAYFLGVVQIVVYT 75 Query 77 GAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGLT 136 GA+MMLFLFV+ML+GV +A+SLKETL+GQR A L G+GFG+LL + IG + + F GL Sbjct 76 GAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGIGNASLKTFDGLG 135 Query 137 VANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQERF 196 AN+ GNVEGLAAL+F++Y++AFE+T ALLITAAVGAMVL HRER ER ++QRE S+ER Sbjct 136 QANSGGNVEGLAALVFTKYVFAFEITGALLITAAVGAMVLTHRERTERARSQREQSEERV 195 Query 197 RPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 R G H PLP PGVYARHNAVD+ LLPDG+ SELSV LR RG Sbjct 196 RTGKHVPPLPAPGVYARHNAVDIPGLLPDGTTSELSVNATLRGRG 240 >gi|254382433|ref|ZP_04997792.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1] gi|194341337|gb|EDX22303.1| NADH dehydrogenase subunit J [Streptomyces sp. Mg1] Length=270 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/229 (66%), Positives = 178/229 (78%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FWVL +A++GA+ +L AV+SA+ LA TMIILAVFY+A A FLGVVQV Sbjct 11 TSTGEAVQFWVLGTVAVIGALSTILMKKAVHSALSLAGTMIILAVFYLANGAYFLGVVQV 70 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 +VYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR AVL +GFG LLI+ I F Sbjct 71 IVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWMAVLCALGFGTLLIAGIAHARLNHF 130 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL N+ G+VEGLA LIF++Y++AFE+T ALLITAAVGAMVL HRER ER TQREL+ Sbjct 131 NGLGRINSGGHVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAATQRELA 190 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 + R R G PLP PGVYARHNAVDVA LLPDG+ SEL+V + LR RG Sbjct 191 ERRVREGVQLPPLPAPGVYARHNAVDVAGLLPDGTPSELTVSKTLRARG 239 >gi|302536177|ref|ZP_07288519.1| NADH dehydrogenase subunit J [Streptomyces sp. C] gi|302445072|gb|EFL16888.1| NADH dehydrogenase subunit J [Streptomyces sp. C] Length=270 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/226 (66%), Positives = 178/226 (79%), Gaps = 0/226 (0%) Query 16 GEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVY 75 GEAV FWVL +A++GA+ +L AV+SA+ LA TMI+LAVFY+A A FLGVVQVVVY Sbjct 14 GEAVQFWVLGTVAVIGALCTILMKKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQVVVY 73 Query 76 TGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGL 135 TGA+MMLFLFV+ML+GV +A+SLKET++GQR A L G+GFG+LLI+ IG F GL Sbjct 74 TGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAALCGLGFGILLIAGIGNAGLTHFNGL 133 Query 136 TVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQER 195 N+ G+VEGLA LIF+RY++AFE+T ALLITAAVGAMVL HRER ER TQREL+++R Sbjct 134 GKVNSAGHVEGLAELIFTRYIFAFEITGALLITAAVGAMVLTHRERTERAATQRELAEKR 193 Query 196 FRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 R G PLP PGVYARHNAVDVA LLPDG+ SEL+V + LR RG Sbjct 194 VREGVQLPPLPAPGVYARHNAVDVAGLLPDGTPSELTVNKTLRARG 239 >gi|345008477|ref|YP_004810831.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] gi|344034826|gb|AEM80551.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces violaceusniger Tu 4113] Length=303 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/229 (64%), Positives = 181/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEA+ FWVL +A++GA+ +L AV+SA+ LA TMI+LAVFY+A A FLGVVQ+ Sbjct 12 TSTGEALQFWVLGTVAVIGALCTILMHKAVHSALCLAGTMIVLAVFYLANGAYFLGVVQI 71 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKETL+GQR A L G+GFG+LL + +G + + Sbjct 72 VVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGILLCAGLGNASLTTW 131 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL ANA GNVEGLAALIF++Y++AFE+T ALLITAAVGAMVL HRER ER +TQRE + Sbjct 132 NGLGQANAGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERARTQREQA 191 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 + R R G + PLP PGVYARHNAVD+ LLPDG+ SEL+V LR RG Sbjct 192 EARVRTGRNVPPLPAPGVYARHNAVDIPGLLPDGTPSELTVNATLRGRG 240 >gi|311897899|dbj|BAJ30307.1| putative NADH-quinone oxidoreductase subunit J [Kitasatospora setae KM-6054] Length=283 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 146/229 (64%), Positives = 181/229 (80%), Gaps = 0/229 (0%) Query 13 TSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQV 72 TSTGEAV FWVL+ +A+ GA+G++L AV+SA+ LA TMI LAV Y+AQ A+FLGVVQ+ Sbjct 2 TSTGEAVQFWVLAVIAVGGALGMLLMRKAVHSALCLAATMIALAVCYLAQGAVFLGVVQI 61 Query 73 VVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGF 132 VVYTGA+MMLFLFV+ML+GV +A+SLKE L+GQRVAA L G+GFGVLL++ + R F Sbjct 62 VVYTGAIMMLFLFVVMLVGVSAADSLKEQLKGQRVAAALCGLGFGVLLVAGLANAKLRDF 121 Query 133 AGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELS 192 GL ANA GNV+GLA LIF++Y+WAFE+TSALLITAAVGAMVL HRE+ + TQR+L+ Sbjct 122 TGLAGANAEGNVQGLARLIFTKYVWAFEVTSALLITAAVGAMVLTHREKVKAPPTQRQLA 181 Query 193 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 +R + PLP PGVYARHNAVD+ ALLPDG+ +E SV LR RG Sbjct 182 AQRVKDNIQVPPLPAPGVYARHNAVDIPALLPDGTVAEDSVMGTLRERG 230 >gi|345001416|ref|YP_004804270.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. SirexAA-E] gi|344317042|gb|AEN11730.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces sp. SirexAA-E] Length=288 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/228 (66%), Positives = 181/228 (80%), Gaps = 3/228 (1%) Query 16 GEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVY 75 GEAV FW+L +A++GA+ VL AV+SA+ LA TMI+LAVFY+A A FLG+VQ+VVY Sbjct 15 GEAVQFWLLGTVAVIGALSTVLMKKAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVY 74 Query 76 TGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGL 135 TGA+MMLFLFV+ML+GV +A+SLKET++GQR A G+GFGVLLI+ IGQ + R + GL Sbjct 75 TGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLAAGCGLGFGVLLIAGIGQASLRSYNGL 134 Query 136 TVANA--NGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQ 193 ANA GNVEGLA LIF++Y++AFE+T ALLITA VGAM+L HRER ER KTQRELSQ Sbjct 135 GAANALHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTHRERTERAKTQRELSQ 194 Query 194 ERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ER R H PLP PGVYARHNAVD+A LLPDG+ SEL+V + LR RG Sbjct 195 ERVRS-SHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVMQTLRRRG 241 >gi|326382754|ref|ZP_08204444.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis NRRL B-59395] gi|326198344|gb|EGD55528.1| NADH:ubiquinone oxidoreductase subunit J [Gordonia neofelifaecis NRRL B-59395] Length=282 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 161/255 (64%), Positives = 179/255 (71%), Gaps = 15/255 (5%) Query 1 MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60 MTA L + + RTS EAV FWVL A+ ++GA+GVVL+ AVYSA+FLAMTMIILAVFY+ Sbjct 1 MTAALLAQELTRTSGTEAVTFWVLGAVVVIGALGVVLSPKAVYSAVFLAMTMIILAVFYV 60 Query 61 AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120 Q ALFLGVVQVVVYTGAVMMLFLFVLMLIGVDS+ESL E++RGQR+AA G+GF VLL Sbjct 61 MQGALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSSESLVESIRGQRLAAAGLGLGFAVLL 120 Query 121 ISTIGQVATRGFAGLT---------------VANANGNVEGLAALIFSRYLWAFELTSAL 165 I+ IG F G N N+ LA LIF RYLWAFELT AL Sbjct 121 IAAIGSATLAVFVGAPDFSHGTAPGGPSTELRTGGNQNIRALAELIFGRYLWAFELTGAL 180 Query 166 LITAAVGAMVLAHRERFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPD 225 LITA +GAMVLAHR+RF R QRE S ERF G H TPLP PGVYARHNAVDV A PD Sbjct 181 LITATLGAMVLAHRQRFGPRNGQREQSVERFSSGAHATPLPPPGVYARHNAVDVPAREPD 240 Query 226 GSYSELSVPRMLRTR 240 GS S LSV L R Sbjct 241 GSPSRLSVNANLTAR 255 >gi|182436768|ref|YP_001824487.1| NADH dehydrogenase subunit J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777363|ref|ZP_08236628.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces cf. griseus XylebKG-1] gi|178465284|dbj|BAG19804.1| putative NADH dehydrogenase chain J [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657696|gb|EGE42542.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Streptomyces griseus XylebKG-1] Length=288 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/228 (64%), Positives = 180/228 (79%), Gaps = 3/228 (1%) Query 16 GEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYMAQDALFLGVVQVVVY 75 GEA+ FW+L +A++GA+ VL AV+SA+ LA TMI+LAVFY+A A FLG+VQ+VVY Sbjct 13 GEAIQFWILGTVAVIGALSTVLLKRAVHSALSLAGTMIVLAVFYLANGAYFLGIVQIVVY 72 Query 76 TGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLLISTIGQVATRGFAGL 135 TGA+MMLFLFV+ML+GV +A+SLKET++GQR A+ G+GFG+LLI+ IG + F GL Sbjct 73 TGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALGCGLGFGILLIAGIGNASLSTFEGL 132 Query 136 TVANA--NGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQ 193 ANA GN+EGLA LIF++Y++AFE+T ALLITA VGAMVL HRER ER KTQRE+S+ Sbjct 133 GAANAAHGGNIEGLANLIFTKYVFAFEITGALLITATVGAMVLTHRERTERAKTQREMSE 192 Query 194 ERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTRG 241 ER R G H PLP PGVYARHNAVD+ LLPDG+ SEL+V + LR RG Sbjct 193 ERVR-GKHLPPLPAPGVYARHNAVDIPGLLPDGTPSELTVMQTLRRRG 239 Lambda K H 0.324 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 391676602750 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40