BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3157
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842733|ref|NP_337770.1| NADH dehydrogenase subunit M [Mycob... 1092 0.0
gi|15610293|ref|NP_217673.1| NADH dehydrogenase subunit M [Mycob... 1090 0.0
gi|121639040|ref|YP_979264.1| NADH dehydrogenase subunit M [Myco... 1090 0.0
gi|339633164|ref|YP_004724806.1| NADH dehydrogenase I (chain M) ... 1088 0.0
gi|148824351|ref|YP_001289105.1| NADH dehydrogenase subunit M [M... 1088 0.0
gi|289755276|ref|ZP_06514654.1| NADH dehydrogenase subunit M [My... 1087 0.0
gi|31794333|ref|NP_856826.1| NADH dehydrogenase subunit M [Mycob... 1087 0.0
gi|289759287|ref|ZP_06518665.1| NADH dehydrogenase subunit M [My... 1058 0.0
gi|240169658|ref|ZP_04748317.1| NADH dehydrogenase subunit M [My... 928 0.0
gi|118617958|ref|YP_906290.1| NADH dehydrogenase subunit M [Myco... 889 0.0
gi|183981486|ref|YP_001849777.1| NADH dehydrogenase I (chain M) ... 872 0.0
gi|118462860|ref|YP_883197.1| NADH dehydrogenase subunit M [Myco... 866 0.0
gi|336459334|gb|EGO38277.1| proton-translocating NADH-quinone ox... 865 0.0
gi|41409311|ref|NP_962147.1| NADH dehydrogenase subunit M [Mycob... 864 0.0
gi|254819284|ref|ZP_05224285.1| NADH dehydrogenase subunit M [My... 852 0.0
gi|342861065|ref|ZP_08717714.1| NADH:ubiquinone oxidoreductase s... 850 0.0
gi|296169178|ref|ZP_06850832.1| NADH-quinone oxidoreductase subu... 835 0.0
gi|333991511|ref|YP_004524125.1| NADH dehydrogenase I (chain M) ... 744 0.0
gi|119867635|ref|YP_937587.1| NADH dehydrogenase subunit M [Myco... 726 0.0
gi|108798535|ref|YP_638732.1| NADH dehydrogenase subunit M [Myco... 725 0.0
gi|126434133|ref|YP_001069824.1| NADH dehydrogenase subunit M [M... 723 0.0
gi|118473357|ref|YP_886412.1| NADH dehydrogenase subunit M [Myco... 717 0.0
gi|120402871|ref|YP_952700.1| NADH dehydrogenase subunit M [Myco... 709 0.0
gi|111022884|ref|YP_705856.1| NADH dehydrogenase subunit M [Rhod... 687 0.0
gi|315445441|ref|YP_004078320.1| NADH dehydrogenase subunit M [M... 686 0.0
gi|226365392|ref|YP_002783175.1| NADH dehydrogenase subunit M [R... 678 0.0
gi|145225072|ref|YP_001135750.1| NADH dehydrogenase subunit M [M... 672 0.0
gi|312139320|ref|YP_004006656.1| NADH dehydrogenase (quinone) ch... 672 0.0
gi|54024625|ref|YP_118867.1| NADH dehydrogenase subunit M [Nocar... 668 0.0
gi|333922090|ref|YP_004495671.1| putative NADH dehydrogenase sub... 649 0.0
gi|325676671|ref|ZP_08156346.1| NADH-quinone oxidoreductase subu... 649 0.0
gi|169629232|ref|YP_001702881.1| NADH dehydrogenase subunit M [M... 645 0.0
gi|262200409|ref|YP_003271617.1| proton-translocating NADH-quino... 636 2e-180
gi|226306202|ref|YP_002766162.1| NADH-quinone oxidoreductase cha... 625 5e-177
gi|343926364|ref|ZP_08765869.1| NADH-quinone oxidoreductase chai... 620 2e-175
gi|229490929|ref|ZP_04384764.1| NADH-quinone oxidoreductase, m s... 615 7e-174
gi|337767481|emb|CCB76192.1| NADH-quinone oxidoreductase subunit... 571 1e-160
gi|256396780|ref|YP_003118344.1| proton-translocating NADH-quino... 566 5e-159
gi|326382751|ref|ZP_08204441.1| NADH:ubiquinone oxidoreductase s... 560 2e-157
gi|311897902|dbj|BAJ30310.1| putative NADH-quinone oxidoreductas... 559 6e-157
gi|302536180|ref|ZP_07288522.1| NADH dehydrogenase subunit M [St... 556 3e-156
gi|328884324|emb|CCA57563.1| NADH-ubiquinone oxidoreductase chai... 555 1e-155
gi|254382430|ref|ZP_04997789.1| NADH dehydrogenase subunit M [St... 553 3e-155
gi|345008480|ref|YP_004810834.1| proton-translocating NADH-quino... 546 3e-153
gi|271962167|ref|YP_003336363.1| NADH dehydrogenase (quinone) [S... 545 6e-153
gi|297192775|ref|ZP_06910173.1| NADH dehydrogenase subunit I M (... 543 3e-152
gi|294630808|ref|ZP_06709368.1| NADH-quinone oxidoreductase, M s... 541 9e-152
gi|302543432|ref|ZP_07295774.1| NADH-quinone oxidoreductase, M s... 540 3e-151
gi|21222957|ref|NP_628736.1| NADH dehydrogenase subunit M [Strep... 538 1e-150
gi|29831392|ref|NP_826026.1| NADH dehydrogenase subunit M [Strep... 537 2e-150
>gi|15842733|ref|NP_337770.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis CDC1551]
gi|167970174|ref|ZP_02552451.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Ra]
gi|254365782|ref|ZP_04981827.1| NADH dehydrogenase I (chain M) nuoM (NADH-ubiquinone oxidoreductase
chain M) [Mycobacterium tuberculosis str. Haarlem]
7 more sequence titles
Length=554
Score = 1092 bits (2824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/553 (100%), Positives = 553/553 (100%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 2 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 61
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 62 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 121
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 122 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 181
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 182 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 241
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 242 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 301
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 302 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 361
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA
Sbjct 362 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 421
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN
Sbjct 422 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 481
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 482 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 541
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 542 AVGASRTAEGPHP 554
>gi|15610293|ref|NP_217673.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Rv]
gi|148663012|ref|YP_001284535.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Ra]
gi|253800191|ref|YP_003033192.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis
KZN 1435]
52 more sequence titles
Length=553
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/553 (99%), Positives = 553/553 (100%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 1 MNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA
Sbjct 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN
Sbjct 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 541 AVGASRTAEGPHP 553
>gi|121639040|ref|YP_979264.1| NADH dehydrogenase subunit M [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991532|ref|YP_002646221.1| NADH dehydrogenase subunit M [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494688|emb|CAL73169.1| Probable NADH dehydrogenase I (chain M) nuoM [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774647|dbj|BAH27453.1| NADH dehydrogenase subunit M [Mycobacterium bovis BCG str. Tokyo
172]
gi|341603079|emb|CCC65757.1| probable NADH dehydrogenase I (chain M) nuoM [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=553
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/553 (99%), Positives = 553/553 (100%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 1 MNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA
Sbjct 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGP+AEGN
Sbjct 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPIAEGN 480
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 541 AVGASRTAEGPHP 553
>gi|339633164|ref|YP_004724806.1| NADH dehydrogenase I (chain M) NUOK (NADH-ubiquinone oxidoreductase
chain M) [Mycobacterium africanum GM041182]
gi|339332520|emb|CCC28235.1| putative NADH dehydrogenase I (chain M) NUOK (NADH-ubiquinone
oxidoreductase chain M) [Mycobacterium africanum GM041182]
Length=553
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/553 (99%), Positives = 553/553 (100%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 1 MNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFP+PSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 301 RYCLQLFPEPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA
Sbjct 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN
Sbjct 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 541 AVGASRTAEGPHP 553
>gi|148824351|ref|YP_001289105.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis F11]
gi|148722878|gb|ABR07503.1| NADH dehydrogenase I chain M nuoM (NADH-ubiquinone oxidoreductase
chain M) [Mycobacterium tuberculosis F11]
Length=553
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/553 (99%), Positives = 552/553 (99%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 1 MNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMF FAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 241 YGADPAVFKALFLGFMFTFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA
Sbjct 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN
Sbjct 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 541 AVGASRTAEGPHP 553
>gi|289755276|ref|ZP_06514654.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis EAS054]
gi|289695863|gb|EFD63292.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis EAS054]
Length=553
Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/553 (99%), Positives = 552/553 (99%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 1 MNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAG FMVSA
Sbjct 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGAFMVSA 420
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN
Sbjct 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 541 AVGASRTAEGPHP 553
>gi|31794333|ref|NP_856826.1| NADH dehydrogenase subunit M [Mycobacterium bovis AF2122/97]
gi|31619929|emb|CAD95273.1| PROBABLE NADH DEHYDROGENASE I (CHAIN M) NUOK (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN M) [Mycobacterium bovis AF2122/97]
Length=553
Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/553 (99%), Positives = 552/553 (99%), Gaps = 0/553 (0%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP
Sbjct 1 MNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY
Sbjct 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL
Sbjct 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR
Sbjct 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML
Sbjct 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV
Sbjct 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARR SRSIADYGGVQKVAPILAGTFMVSA
Sbjct 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRDSRSIADYGGVQKVAPILAGTFMVSA 420
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGP+AEGN
Sbjct 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPIAEGN 480
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP
Sbjct 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
Query 541 AVGASRTAEGPHP 553
AVGASRTAEGPHP
Sbjct 541 AVGASRTAEGPHP 553
>gi|289759287|ref|ZP_06518665.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T85]
gi|289714851|gb|EFD78863.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T85]
Length=548
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/536 (100%), Positives = 536/536 (100%), Gaps = 0/536 (0%)
Query 18 AVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFGAGY 77
AVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFGAGY
Sbjct 13 AVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFGAGY 72
Query 78 TLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERT 137
TLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERT
Sbjct 73 TLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERT 132
Query 138 RGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAAVKF 197
RGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAAVKF
Sbjct 133 RGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAAVKF 192
Query 198 LLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMF 257
LLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMF
Sbjct 193 LLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMF 252
Query 258 AFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPL 317
AFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPL
Sbjct 253 AFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPL 312
Query 318 IVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHG 377
IVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHG
Sbjct 313 IVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHG 372
Query 378 LSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFL 437
LSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFL
Sbjct 373 LSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFL 432
Query 438 VLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNERIGDLVGREMIVVAPL 497
VLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNERIGDLVGREMIVVAPL
Sbjct 433 VLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNERIGDLVGREMIVVAPL 492
Query 498 IALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPAVGASRTAEGPHP 553
IALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPAVGASRTAEGPHP
Sbjct 493 IALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPAVGASRTAEGPHP 548
>gi|240169658|ref|ZP_04748317.1| NADH dehydrogenase subunit M [Mycobacterium kansasii ATCC 12478]
Length=542
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/553 (88%), Positives = 512/553 (93%), Gaps = 13/553 (2%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
++N WLS LWLVPLAG+VLIILLPPG RRLAKW G++VSV TLAVS+VVA FKP EP
Sbjct 1 MSNFAWLSTLWLVPLAGSVLIILLPPGLRRLAKWTGVIVSVATLAVSVVVATGFKPGGEP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
+QFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWND D
Sbjct 61 FQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDGDGGD--------- 111
Query 121 PQRPAPPRLRSS-GGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 179
PQRPA P LRSS GERTRGVHAYVALTLAIESMVL+S++ALDVLLFYVFFEAMLIPMYF
Sbjct 112 PQRPASPSLRSSRSGERTRGVHAYVALTLAIESMVLISLVALDVLLFYVFFEAMLIPMYF 171
Query 180 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 239
LIGGFGQG GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQ+ GTFDFREIVAGVA+G
Sbjct 172 LIGGFGQGPGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQHGPGTFDFREIVAGVASG 231
Query 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299
RYG DPAVFKALFLGFMFAFA+KAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM
Sbjct 232 RYGIDPAVFKALFLGFMFAFAVKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 291
Query 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359
LRYCLQLFPD STYFRPLIVTLAIIGVIYGA+VAIGQTD+MRLIAYTSISHFGFIIAGIF
Sbjct 292 LRYCLQLFPDASTYFRPLIVTLAIIGVIYGAVVAIGQTDIMRLIAYTSISHFGFIIAGIF 351
Query 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419
VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSRSIADYGGVQKVAPILAGTF+VS
Sbjct 352 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRSIADYGGVQKVAPILAGTFLVS 411
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
AMAT+SLPGLAPF+SEFLVLLGT++RYWLAAAFGVTALVLSA+YMLWLYQRVMTGPVA+G
Sbjct 412 AMATLSLPGLAPFVSEFLVLLGTYNRYWLAAAFGVTALVLSAIYMLWLYQRVMTGPVAKG 471
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPV 539
NERIGDLV REMIVVAPLIALLLVLGVYPKP+LD+INPAVENTMTTIGQHDPAP V PV
Sbjct 472 NERIGDLVPREMIVVAPLIALLLVLGVYPKPMLDLINPAVENTMTTIGQHDPAPHV--PV 529
Query 540 PAVGASRTAEGPH 552
+ G RTAEGPH
Sbjct 530 -STGVPRTAEGPH 541
>gi|118617958|ref|YP_906290.1| NADH dehydrogenase subunit M [Mycobacterium ulcerans Agy99]
gi|118570068|gb|ABL04819.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase
chain M) [Mycobacterium ulcerans Agy99]
Length=529
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/551 (84%), Positives = 492/551 (90%), Gaps = 26/551 (4%)
Query 2 NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPY 61
++VPWL++LWLVPLA +VL ILLPPG R+LAKW G++ SV+TLA+S+VVA FKPS E Y
Sbjct 4 SHVPWLTLLWLVPLAASVLTILLPPGLRQLAKWTGLIASVVTLAMSVVVATGFKPSGEHY 63
Query 62 QFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYP 121
QFVE SWIPAFGA YTLGVDGIAVVLVLLTTVLIPLL +AGWND
Sbjct 64 QFVENRSWIPAFGASYTLGVDGIAVVLVLLTTVLIPLLQIAGWND--------------- 108
Query 122 QRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLI 181
GGERTRGVHAYVALTLAIESMVL+SV+ALDVLLFYVFFEAMLIPMYFLI
Sbjct 109 -----------GGERTRGVHAYVALTLAIESMVLISVVALDVLLFYVFFEAMLIPMYFLI 157
Query 182 GGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRY 241
GGFGQG RS AAVKFLLYNLFGGLIMLAAVIGLYVVTAQ SGTFDFR+IVAGV G Y
Sbjct 158 GGFGQGRARSGAAVKFLLYNLFGGLIMLAAVIGLYVVTAQNGSGTFDFRDIVAGVQGGHY 217
Query 242 GADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLR 301
G PAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLR
Sbjct 218 GEHPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLR 277
Query 302 YCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVM 361
YCLQLFPD STYFRPLIVTLAIIGVIYGA+VAIGQTD+MRLIAYTSISHFGFIIAGIFVM
Sbjct 278 YCLQLFPDASTYFRPLIVTLAIIGVIYGAVVAIGQTDIMRLIAYTSISHFGFIIAGIFVM 337
Query 362 TTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAM 421
TTQGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+IADYGGVQKVAP+LAGTF+VSAM
Sbjct 338 TTQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRAIADYGGVQKVAPVLAGTFLVSAM 397
Query 422 ATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNE 481
AT+SLPGLAPFISEFLVLLGTF+RYWLAAA GVTALVLSA+YMLWLYQRVMTGP+A+GNE
Sbjct 398 ATLSLPGLAPFISEFLVLLGTFNRYWLAAALGVTALVLSAIYMLWLYQRVMTGPLAKGNE 457
Query 482 RIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPA 541
RIGDLV REMIVVAPLIA+LL+LGVYPKPVLD+INPAVE+TM+TIGQHDPAP V HPV
Sbjct 458 RIGDLVPREMIVVAPLIAMLLILGVYPKPVLDVINPAVEHTMSTIGQHDPAPKVPHPVSG 517
Query 542 VGASRTAEGPH 552
V A RTAEGPH
Sbjct 518 VSAPRTAEGPH 528
>gi|183981486|ref|YP_001849777.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase
chain M) [Mycobacterium marinum M]
gi|183174812|gb|ACC39922.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase
chain M) [Mycobacterium marinum M]
Length=528
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/551 (85%), Positives = 494/551 (90%), Gaps = 26/551 (4%)
Query 2 NNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPY 61
++VPWL++LWLVPLA +VLIILLPPG R+LAKW G++ SV+TLAVS+VVA FKPS E Y
Sbjct 3 SHVPWLTLLWLVPLAASVLIILLPPGLRQLAKWTGLIASVVTLAVSVVVATGFKPSGEHY 62
Query 62 QFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYP 121
QFVE SWIPAFGA YTLGVDGIAVVLVLLTTVLIPLL +AGWND
Sbjct 63 QFVENRSWIPAFGASYTLGVDGIAVVLVLLTTVLIPLLQIAGWND--------------- 107
Query 122 QRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLI 181
GGERTRGVHAYVALTLAIESMVL+SV+ALDVLLFYVFFEAMLIPMYFLI
Sbjct 108 -----------GGERTRGVHAYVALTLAIESMVLISVVALDVLLFYVFFEAMLIPMYFLI 156
Query 182 GGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRY 241
GGFGQG RS AAVKFLLYNLFGGLIMLAAVIGLYVVTAQ SGTFDFR+IVAGV G Y
Sbjct 157 GGFGQGRARSGAAVKFLLYNLFGGLIMLAAVIGLYVVTAQNGSGTFDFRDIVAGVQGGHY 216
Query 242 GADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLR 301
G PAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLR
Sbjct 217 GEHPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLR 276
Query 302 YCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVM 361
YCLQLFPD STYFRPLIVTLAIIGVIYGA+VAIGQTD+MRLIAYTSISHFGFIIAGIFVM
Sbjct 277 YCLQLFPDASTYFRPLIVTLAIIGVIYGAVVAIGQTDIMRLIAYTSISHFGFIIAGIFVM 336
Query 362 TTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAM 421
TTQGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+IADYGGVQKVAP+LAGTF+VSAM
Sbjct 337 TTQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRAIADYGGVQKVAPVLAGTFLVSAM 396
Query 422 ATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNE 481
AT+SLPGLAPFISEFLVLLGTF+RYWLAAAFGVTALVLSA+YMLWLYQRVMTGP+A+GNE
Sbjct 397 ATLSLPGLAPFISEFLVLLGTFNRYWLAAAFGVTALVLSAIYMLWLYQRVMTGPLAKGNE 456
Query 482 RIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPA 541
RIGDLV REMIVVAPLIA+LL+LGVYPKPVLD+INPAVE+TM+TIGQHDPAP V HPV
Sbjct 457 RIGDLVPREMIVVAPLIAMLLILGVYPKPVLDVINPAVEHTMSTIGQHDPAPKVPHPVSG 516
Query 542 VGASRTAEGPH 552
V A RTAEGPH
Sbjct 517 VSAPRTAEGPH 527
>gi|118462860|ref|YP_883197.1| NADH dehydrogenase subunit M [Mycobacterium avium 104]
gi|254776467|ref|ZP_05217983.1| NADH dehydrogenase subunit M [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118164147|gb|ABK65044.1| NADH-quinone oxidoreductase chain m [Mycobacterium avium 104]
Length=522
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/551 (83%), Positives = 490/551 (89%), Gaps = 32/551 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+N +PWLS+LWLVPLAG+VLIIL+PPG R+LAKW G+V VLTLAV+IVV A FK P
Sbjct 1 MNQLPWLSILWLVPLAGSVLIILMPPGLRQLAKWTGLVFGVLTLAVAIVVTAGFKTGGAP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKH WIPAFGAGYTLGVDGIAVVLVLLT VLIP+L VAGWND
Sbjct 61 YQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQVAGWND-------------- 106
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
GG+R RGVHAYVALTLAIESMVL+SVIALDVLLFYVFFEAMLIPMYFL
Sbjct 107 ------------GGDRQRGVHAYVALTLAIESMVLVSVIALDVLLFYVFFEAMLIPMYFL 154
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFG G+GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVT+Q+ +GTFDFR+IVAGVA+GR
Sbjct 155 IGGFGAGSGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTSQHGAGTFDFRDIVAGVASGR 214
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAV KALFLGFMFAFAIKAPLWPFHRWLPDAAVE+TPATAVLMMAVMDKVGTFGML
Sbjct 215 YGADPAVSKALFLGFMFAFAIKAPLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGML 274
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPD +TYFRPLIV LA+IGVIYGAIVAIGQ D+MRLIAYTSISHFGFII GIFV
Sbjct 275 RYCLQLFPDAATYFRPLIVVLAVIGVIYGAIVAIGQADVMRLIAYTSISHFGFIILGIFV 334
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARR-GSRSIADYGGVQKVAPILAGTFMVS 419
MT+QGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+IADYGGVQKVAP+LAGTF+VS
Sbjct 335 MTSQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGGSRAIADYGGVQKVAPVLAGTFLVS 394
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
AMAT+SLPGLAPF+SEFLVLLGTF+RYWLAAAFGVTALVLSAVYMLWLYQR+MTGPVA G
Sbjct 395 AMATLSLPGLAPFVSEFLVLLGTFNRYWLAAAFGVTALVLSAVYMLWLYQRMMTGPVAGG 454
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPV 539
NE+IGDL RE++VVAPLIALLLVLG+YPKPVLDIINPAVENTMTTIGQHDPAPSV
Sbjct 455 NEKIGDLRARELVVVAPLIALLLVLGIYPKPVLDIINPAVENTMTTIGQHDPAPSV---- 510
Query 540 PAVGASRTAEG 550
+G RTAEG
Sbjct 511 -PMGTPRTAEG 520
>gi|336459334|gb|EGO38277.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mycobacterium
avium subsp. paratuberculosis S397]
Length=523
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/551 (83%), Positives = 490/551 (89%), Gaps = 32/551 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
VN++PWLS+LWLVPLAG+VLIIL+PPG R+LAKW G+V VLTLAV+IVV A FK P
Sbjct 2 VNHLPWLSILWLVPLAGSVLIILMPPGLRQLAKWTGLVFGVLTLAVAIVVTAGFKTGGAP 61
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKH WIPAFGAGYTLGVDGIAVVLVLLT VLIP+L VAGWND
Sbjct 62 YQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQVAGWND-------------- 107
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
GG+R RGVHAYVALTLAIESMVL+SVIALDVLLFYVFFEAMLIPMYFL
Sbjct 108 ------------GGDRQRGVHAYVALTLAIESMVLVSVIALDVLLFYVFFEAMLIPMYFL 155
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFG G+GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVT+Q+ +GTFDFR+IVAGVA+GR
Sbjct 156 IGGFGAGSGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTSQHGAGTFDFRDIVAGVASGR 215
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAV KALFLGFMFAFAIKAPLWPFHRWLPDAAVE+TPATAVLMMAVMDKVGTFGML
Sbjct 216 YGADPAVSKALFLGFMFAFAIKAPLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGML 275
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPD +TYFRPLIV LA+IGVIYGAIVAIGQ D+MRLIAYTSISHFGFII GIFV
Sbjct 276 RYCLQLFPDAATYFRPLIVVLAVIGVIYGAIVAIGQADVMRLIAYTSISHFGFIILGIFV 335
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARR-GSRSIADYGGVQKVAPILAGTFMVS 419
MT+QGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+I DYGGVQKVAP+LAGTF+VS
Sbjct 336 MTSQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGGSRAIVDYGGVQKVAPVLAGTFLVS 395
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
AMAT+SLPGLAPF+SEFLVLLGTF+RYWLAAAFGVTALVLSAVYMLWLYQR+MTGPVA G
Sbjct 396 AMATLSLPGLAPFVSEFLVLLGTFNRYWLAAAFGVTALVLSAVYMLWLYQRMMTGPVAGG 455
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPV 539
NE+IGDL RE++VVAPLIALLLVLG+YPKPVLDIINPAVENTMTTIGQHDPAPSV
Sbjct 456 NEKIGDLRARELVVVAPLIALLLVLGIYPKPVLDIINPAVENTMTTIGQHDPAPSV---- 511
Query 540 PAVGASRTAEG 550
+G RTAEG
Sbjct 512 -PMGTPRTAEG 521
>gi|41409311|ref|NP_962147.1| NADH dehydrogenase subunit M [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398131|gb|AAS05761.1| NuoM [Mycobacterium avium subsp. paratuberculosis K-10]
Length=522
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/551 (83%), Positives = 490/551 (89%), Gaps = 32/551 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+N++PWLS+LWLVPLAG+VLIIL+PPG R+LAKW G+V VLTLAV+IVV A FK P
Sbjct 1 MNHLPWLSILWLVPLAGSVLIILMPPGLRQLAKWTGLVFGVLTLAVAIVVTAGFKTGGAP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKH WIPAFGAGYTLGVDGIAVVLVLLT VLIP+L VAGWND
Sbjct 61 YQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQVAGWND-------------- 106
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
GG+R RGVHAYVALTLAIESMVL+SVIALDVLLFYVFFEAMLIPMYFL
Sbjct 107 ------------GGDRQRGVHAYVALTLAIESMVLVSVIALDVLLFYVFFEAMLIPMYFL 154
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFG G+GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVT+Q+ +GTFDFR+IVAGVA+GR
Sbjct 155 IGGFGAGSGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTSQHGAGTFDFRDIVAGVASGR 214
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGADPAV KALFLGFMFAFAIKAPLWPFHRWLPDAAVE+TPATAVLMMAVMDKVGTFGML
Sbjct 215 YGADPAVSKALFLGFMFAFAIKAPLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGML 274
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPD +TYFRPLIV LA+IGVIYGAIVAIGQ D+MRLIAYTSISHFGFII GIFV
Sbjct 275 RYCLQLFPDAATYFRPLIVVLAVIGVIYGAIVAIGQADVMRLIAYTSISHFGFIILGIFV 334
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARR-GSRSIADYGGVQKVAPILAGTFMVS 419
MT+QGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+I DYGGVQKVAP+LAGTF+VS
Sbjct 335 MTSQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGGSRAIVDYGGVQKVAPVLAGTFLVS 394
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
AMAT+SLPGLAPF+SEFLVLLGTF+RYWLAAAFGVTALVLSAVYMLWLYQR+MTGPVA G
Sbjct 395 AMATLSLPGLAPFVSEFLVLLGTFNRYWLAAAFGVTALVLSAVYMLWLYQRMMTGPVAGG 454
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPV 539
NE+IGDL RE++VVAPLIALLLVLG+YPKPVLDIINPAVENTMTTIGQHDPAPSV
Sbjct 455 NEKIGDLRARELVVVAPLIALLLVLGIYPKPVLDIINPAVENTMTTIGQHDPAPSV---- 510
Query 540 PAVGASRTAEG 550
+G RTAEG
Sbjct 511 -PMGTPRTAEG 520
>gi|254819284|ref|ZP_05224285.1| NADH dehydrogenase subunit M [Mycobacterium intracellulare ATCC
13950]
Length=531
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/555 (84%), Positives = 492/555 (89%), Gaps = 31/555 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+ +VPWLSVLWLVPLAGAVLIIL+PPG R+LAKW G+V + TLAV+IVV FK P
Sbjct 5 MTSVPWLSVLWLVPLAGAVLIILMPPGLRQLAKWTGLVFGIATLAVAIVVTLGFKTGGAP 64
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVEKH WIPAFGAGYTLGVDGIAVVLVLLT VLIP+L +AGWND
Sbjct 65 YQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQIAGWND-------------- 110
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
GG+RTRGVHAYVALTLAIESMVL+SVIALDVLLFYVFFEAMLIPMYFL
Sbjct 111 ------------GGQRTRGVHAYVALTLAIESMVLISVIALDVLLFYVFFEAMLIPMYFL 158
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFG G+GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVT+Q+ SGTFDFREIVAGVA+GR
Sbjct 159 IGGFGGGSGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTSQHGSGTFDFREIVAGVASGR 218
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGAD AVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVE+TPATAVLMMAVMDKVGTFGML
Sbjct 219 YGADSAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGML 278
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFPD STYFRPLIV LA+IGV+YGAIVAIGQTD+MRLIAYTSISHFGFII GIFV
Sbjct 279 RYCLQLFPDASTYFRPLIVVLAVIGVVYGAIVAIGQTDIMRLIAYTSISHFGFIILGIFV 338
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MT+QGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+IADYGGVQKVAPILAGTF+VSA
Sbjct 339 MTSQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRAIADYGGVQKVAPILAGTFLVSA 398
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MAT+SLPGLAPFISEFLVLLGTF+RYWLAA FGVTALVLSAVYMLWLYQRVMTGPVA GN
Sbjct 399 MATLSLPGLAPFISEFLVLLGTFNRYWLAAGFGVTALVLSAVYMLWLYQRVMTGPVATGN 458
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPS---VAH 537
E+IGDL RE+IVVAPLIALLLVLG+YPKPVLDIINPAVENTMTTIGQHDP P+ V +
Sbjct 459 EKIGDLRARELIVVAPLIALLLVLGIYPKPVLDIINPAVENTMTTIGQHDPKPTVPVVGN 518
Query 538 PVPAVGASRTAEGPH 552
P PA +RTAEGP
Sbjct 519 PRPA--QARTAEGPR 531
>gi|342861065|ref|ZP_08717714.1| NADH:ubiquinone oxidoreductase subunit M [Mycobacterium colombiense
CECT 3035]
gi|342131509|gb|EGT84779.1| NADH:ubiquinone oxidoreductase subunit M [Mycobacterium colombiense
CECT 3035]
Length=527
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/554 (83%), Positives = 488/554 (89%), Gaps = 29/554 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+N+VPWLSVLWLVPLAG+VLIIL+PPG R+LAKW G+V LTLA+++VV FK P
Sbjct 1 MNSVPWLSVLWLVPLAGSVLIILMPPGLRQLAKWTGLVFGALTLAIAVVVTLGFKTGGAP 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE H WIPAFGAGYTLGVDGIAVVLVLLT VLIP+L VAGWND
Sbjct 61 YQFVESHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQVAGWND-------------- 106
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
GGER+RGV AY+ALTLAIESMVL+SVIALDVLLFYVFFEAML+PMYFL
Sbjct 107 ------------GGERSRGVQAYIALTLAIESMVLISVIALDVLLFYVFFEAMLVPMYFL 154
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFG G GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVT+++ SGTFDFREIVAGVA+GR
Sbjct 155 IGGFGGGTGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTSEHGSGTFDFREIVAGVASGR 214
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGAD AVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVE+TPATAVLMMAVMDKVGTFGML
Sbjct 215 YGADSAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGML 274
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFP STYFRPLIV LA+IGVIYGAIVAIGQTD+MRLIAYTSISHFGFII GIFV
Sbjct 275 RYCLQLFPGASTYFRPLIVVLAVIGVIYGAIVAIGQTDIMRLIAYTSISHFGFIILGIFV 334
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MT+QGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+IADYGGVQKVAPILAGTF+VSA
Sbjct 335 MTSQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRAIADYGGVQKVAPILAGTFLVSA 394
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MAT+SLPGLAPFISEFLVLLGTF+RYWLAAAFGVTALVLSAVYMLWLYQRVMTGPV +GN
Sbjct 395 MATLSLPGLAPFISEFLVLLGTFNRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVLKGN 454
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSV--AHP 538
ERIGDL RE++VVAPLIALLLVLG+YP+PVLDIINPAVENTMTTIGQHDP P+V P
Sbjct 455 ERIGDLRARELVVVAPLIALLLVLGIYPRPVLDIINPAVENTMTTIGQHDPKPAVPMGTP 514
Query 539 VPAVGASRTAEGPH 552
PA RTAEGP
Sbjct 515 RPA-DLHRTAEGPR 527
>gi|296169178|ref|ZP_06850832.1| NADH-quinone oxidoreductase subunit M [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896157|gb|EFG75823.1| NADH-quinone oxidoreductase subunit M [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=525
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/553 (84%), Positives = 488/553 (89%), Gaps = 30/553 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
VN +PWLS+LWLVPLAG+VL+ILLPPG RRLAKW G+VV V TLAV++VV FK
Sbjct 2 VNTLPWLSILWLVPLAGSVLVILLPPGLRRLAKWTGLVVGVATLAVAVVVTLGFKTGGST 61
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE HSWIPAFGA Y+LGVDGIAVVLVLLT VLIP+L VAGWND
Sbjct 62 YQFVESHSWIPAFGATYSLGVDGIAVVLVLLTAVLIPVLQVAGWNDG------------- 108
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
G ER RGV AYVALTLAIESMVL+SV+ALDVLLFYVFFEAMLIPMYFL
Sbjct 109 ------------GEERNRGVQAYVALTLAIESMVLVSVVALDVLLFYVFFEAMLIPMYFL 156
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGR 240
IGGFG GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTA++ SGTFDFREIVAGVA+GR
Sbjct 157 IGGFGGGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAEHGSGTFDFREIVAGVASGR 216
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
YGAD AVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVE+TPATAVLMMAVMDKVGTFGML
Sbjct 217 YGADSAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGML 276
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFP STYFRPLIV LA+IGVIYGAIVAIGQTD+MRLIAYTSISHFGFII GIFV
Sbjct 277 RYCLQLFPGASTYFRPLIVVLAVIGVIYGAIVAIGQTDIMRLIAYTSISHFGFIILGIFV 336
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MT+QGQSGSTLYMLNHGLSTAAVFLIAGFLI+R GSR+IADYGGVQKVAPILAGTF+VSA
Sbjct 337 MTSQGQSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRAIADYGGVQKVAPILAGTFLVSA 396
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
MAT+SLPGLAPFISEFLVLLGTF+RYWLAAAFGVTALVLSA+YMLWLYQRVMTGPVA GN
Sbjct 397 MATLSLPGLAPFISEFLVLLGTFNRYWLAAAFGVTALVLSAIYMLWLYQRVMTGPVAAGN 456
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVP 540
E+IGDL RE++VVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPS VP
Sbjct 457 EKIGDLRARELLVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPS----VP 512
Query 541 AVG-ASRTAEGPH 552
AV A RTAEGP
Sbjct 513 AVNQAPRTAEGPR 525
>gi|333991511|ref|YP_004524125.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase
chain M) [Mycobacterium sp. JDM601]
gi|333487479|gb|AEF36871.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase
chain M) [Mycobacterium sp. JDM601]
Length=505
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/541 (71%), Positives = 443/541 (82%), Gaps = 42/541 (7%)
Query 17 GAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFK--PSAEPYQFVEKHSWIPAFG 74
GA +I+LP G RLAK G++VS++TLA+++V+ EF P A PYQFVE H+WIPAFG
Sbjct 2 GAGAVIVLPAGAARLAKLTGLLVSLVTLAIAVVITVEFDTTPVAAPYQFVESHAWIPAFG 61
Query 75 AGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGG 134
A YTLGVDGIAVVL LLT L+PLL++AGWND G
Sbjct 62 ARYTLGVDGIAVVLALLTAGLVPLLMLAGWNDGE-------------------------G 96
Query 135 ERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAA 194
+R RG HA+ ALTLA+E+MVL+S+++LDVLLFYVFFEAMLIPMYF+IGGFG GA RS+AA
Sbjct 97 KRRRGPHAFAALTLAVEAMVLISLVSLDVLLFYVFFEAMLIPMYFMIGGFGNGAKRSQAA 156
Query 195 VKFLLYNLFGGLIMLAAVIGLYVVTAQYDS--GTFDFREIVAGVAAGRYGADPAVFKALF 252
+KFLLYNLFGGLIMLAAVIG+Y+V+A+ + GTFDFRE+V+ ++ DP V K LF
Sbjct 157 LKFLLYNLFGGLIMLAAVIGVYMVSAREGTSGGTFDFRELVSLFSSATTTVDPGVLKLLF 216
Query 253 LGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPST 312
GFMFAFA+KAPLWP HRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPD ST
Sbjct 217 AGFMFAFAVKAPLWPLHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDAST 276
Query 313 YFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLY 372
YFRP I+ LA+IGV+YGA+VAIGQ D+MRLIAYTSISHFGFII GIFVMT+QGQSGSTLY
Sbjct 277 YFRPAIIVLAVIGVVYGAMVAIGQRDIMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLY 336
Query 373 MLNHGLSTAAVFLIAGFLIARR-GSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAP 431
MLNHGLSTAA+FLIAGFLI+RR G+R+IADYGGVQKVAP++AGTFMV+AMAT+SLPGLAP
Sbjct 337 MLNHGLSTAALFLIAGFLISRRGGTRAIADYGGVQKVAPVMAGTFMVAAMATLSLPGLAP 396
Query 432 FISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNERIGDLVGREM 491
FISEFLVL+GTF+RYWLAAA G TALVLS++YMLWLYQRVMTGPV GNERI DLV RE+
Sbjct 397 FISEFLVLVGTFNRYWLAAAVGSTALVLSSIYMLWLYQRVMTGPVTAGNERIRDLVPREL 456
Query 492 IVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPAVGASRTAEGP 551
+VVAPLIALL+ LG YPKPVLDIINP V +T+TTIG+ DPAP TAEG
Sbjct 457 VVVAPLIALLVFLGFYPKPVLDIINPGVAHTLTTIGETDPAP------------LTAEGA 504
Query 552 H 552
H
Sbjct 505 H 505
>gi|119867635|ref|YP_937587.1| NADH dehydrogenase subunit M [Mycobacterium sp. KMS]
gi|119693724|gb|ABL90797.1| NADH dehydrogenase subunit M [Mycobacterium sp. KMS]
Length=518
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/547 (70%), Positives = 442/547 (81%), Gaps = 35/547 (6%)
Query 4 VPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQF 63
+PWLSVLW P+ GA +++L+P RR LAKW + VS++ LAV+ VVA F P E YQF
Sbjct 3 IPWLSVLWAAPIVGAGVVMLVP--RRTLAKWVALAVSLVALAVTAVVAVGFDPGGEQYQF 60
Query 64 VEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQR 123
VE WIP+FG GY LGVDGIA+ L++LT VL+PLL+VAGWNDA R PQR
Sbjct 61 VESRQWIPSFGTGYILGVDGIALALIVLTAVLVPLLIVAGWNDAD----------RAPQR 110
Query 124 PAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGG 183
R VH Y+ALTLA+E MV MS++ALDVLLFYVFFEAMLIPMYFLIGG
Sbjct 111 --------------RSVHTYLALTLAVEGMVFMSLVALDVLLFYVFFEAMLIPMYFLIGG 156
Query 184 FG-QGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS---GTFDFREIVAGVAAG 239
FG A S+AAVKFLLYNLFGGLIMLAAVIGLYV TA D+ GTFDFR IVA VAAG
Sbjct 157 FGADRAASSKAAVKFLLYNLFGGLIMLAAVIGLYVTTAASDAFEGGTFDFRAIVAAVAAG 216
Query 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299
+ +PAV +FLGFMFAFA+KAPLWP HRWLPDAAVE+TPA+AVLMMAVMDKVGTFGM
Sbjct 217 DFAVNPAVLNLMFLGFMFAFAVKAPLWPLHRWLPDAAVEATPASAVLMMAVMDKVGTFGM 276
Query 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359
LRYCLQLFPD +T FRPLI+TLA++G++YGA+VAIGQTD+MRLIAYTSISHFGFII GIF
Sbjct 277 LRYCLQLFPDAATLFRPLIITLAVVGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIF 336
Query 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419
VMT+QGQSGS LYM+NHG+STAA+FLIAGFL+++RGSR IA YGGVQKVAP+LAGTF+V+
Sbjct 337 VMTSQGQSGSALYMVNHGISTAALFLIAGFLVSQRGSRLIASYGGVQKVAPVLAGTFLVA 396
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
+AT+SLPGLAPFISEFLVL+GTF+RY + A TALVLSA+Y+LW+YQR+MTGPV +G
Sbjct 397 GLATLSLPGLAPFISEFLVLIGTFTRYPVLAVVAATALVLSAIYVLWMYQRMMTGPVRDG 456
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPV 539
NER+ DLV RE+ VV PLIALLLVLGVYPKP LD+I+PAV +T+TTI Q DP P VA
Sbjct 457 NERLRDLVPRELAVVTPLIALLLVLGVYPKPALDVIDPAVGHTLTTINQPDPTPKVAE-- 514
Query 540 PAVGASR 546
GA+R
Sbjct 515 ---GAAR 518
>gi|108798535|ref|YP_638732.1| NADH dehydrogenase subunit M [Mycobacterium sp. MCS]
gi|108768954|gb|ABG07676.1| NADH dehydrogenase subunit M [Mycobacterium sp. MCS]
Length=517
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/547 (70%), Positives = 442/547 (81%), Gaps = 35/547 (6%)
Query 4 VPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQF 63
+PWLSVLW P+ GA +++L+P RR LAKW + VS++ LAV+ VVA F P E YQF
Sbjct 2 IPWLSVLWAAPIVGAGVVMLVP--RRTLAKWVALAVSLVALAVTAVVAVGFDPGGEQYQF 59
Query 64 VEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQR 123
VE WIP+FG GY LGVDGIA+ L++LT VL+PLL+VAGWNDA R PQR
Sbjct 60 VESRQWIPSFGTGYILGVDGIALALIVLTAVLVPLLIVAGWNDAD----------RAPQR 109
Query 124 PAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGG 183
R VH Y+ALTLA+E MV MS++ALDVLLFYVFFEAMLIPMYFLIGG
Sbjct 110 --------------RSVHTYLALTLAVEGMVFMSLVALDVLLFYVFFEAMLIPMYFLIGG 155
Query 184 FG-QGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS---GTFDFREIVAGVAAG 239
FG A S+AAVKFLLYNLFGGLIMLAAVIGLYV TA D+ GTFDFR IVA VAAG
Sbjct 156 FGADRAASSKAAVKFLLYNLFGGLIMLAAVIGLYVTTAASDAFEGGTFDFRAIVAAVAAG 215
Query 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299
+ +PAV +FLGFMFAFA+KAPLWP HRWLPDAAVE+TPA+AVLMMAVMDKVGTFGM
Sbjct 216 DFAVNPAVLNLMFLGFMFAFAVKAPLWPLHRWLPDAAVEATPASAVLMMAVMDKVGTFGM 275
Query 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359
LRYCLQLFPD +T FRPLI+TLA++G++YGA+VAIGQTD+MRLIAYTSISHFGFII GIF
Sbjct 276 LRYCLQLFPDAATLFRPLIITLAVVGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIF 335
Query 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419
VMT+QGQSGS LYM+NHG+STAA+FLIAGFL+++RGSR IA YGGVQKVAP+LAGTF+V+
Sbjct 336 VMTSQGQSGSALYMVNHGISTAALFLIAGFLVSQRGSRLIASYGGVQKVAPVLAGTFLVA 395
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
+AT+SLPGLAPFISEFLVL+GTF+RY + A TALVLSA+Y+LW+YQR+MTGPV +G
Sbjct 396 GLATLSLPGLAPFISEFLVLIGTFTRYPVLAVVAATALVLSAIYVLWMYQRMMTGPVRDG 455
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPV 539
NER+ DLV RE+ VV PLIALLLVLGVYPKP LD+I+PAV +T+TTI Q DP P VA
Sbjct 456 NERLRDLVPRELAVVTPLIALLLVLGVYPKPALDVIDPAVGHTLTTINQPDPTPKVAE-- 513
Query 540 PAVGASR 546
GA+R
Sbjct 514 ---GAAR 517
>gi|126434133|ref|YP_001069824.1| NADH dehydrogenase subunit M [Mycobacterium sp. JLS]
gi|126233933|gb|ABN97333.1| NADH dehydrogenase subunit M [Mycobacterium sp. JLS]
Length=519
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/548 (70%), Positives = 441/548 (81%), Gaps = 36/548 (6%)
Query 4 VPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQF 63
+PWLSVLW P+ GA +++L+P RR LAKW + VS + LAV+ VVA F P E YQF
Sbjct 3 IPWLSVLWAAPIVGAGVVMLVP--RRTLAKWVALAVSSVALAVTAVVAVGFDPGGEQYQF 60
Query 64 VEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQR 123
VE WIP+FG GY LGVDGIA+ L++LT VL+PLL+VAGWNDA R PQR
Sbjct 61 VESRRWIPSFGTGYILGVDGIALALIVLTAVLVPLLIVAGWNDAD----------RAPQR 110
Query 124 PAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGG 183
R VH Y+ALTLA+E MV MS++ALDVLLFYVFFEAMLIPMYFLIGG
Sbjct 111 --------------RSVHTYLALTLAVEGMVFMSLVALDVLLFYVFFEAMLIPMYFLIGG 156
Query 184 FGQG--AGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS---GTFDFREIVAGVAA 238
FG G RS+AAVKFLLYNLFGGLIMLAAVIGLYV TA D+ GTFDFR IVA VAA
Sbjct 157 FGSGPSQDRSKAAVKFLLYNLFGGLIMLAAVIGLYVTTAASDAFEGGTFDFRAIVAAVAA 216
Query 239 GRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFG 298
G + +PAV +FLGFMFAFA+KAPLWP HRWLPDAAVE+TPA+AVLMMAVMDKVGTFG
Sbjct 217 GDFVVNPAVLNLMFLGFMFAFAVKAPLWPLHRWLPDAAVEATPASAVLMMAVMDKVGTFG 276
Query 299 MLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGI 358
MLRYCLQLFPD +T FRPLI+TLA++G++YGA+VAIGQTD+MRLIAYTSISHFGFII GI
Sbjct 277 MLRYCLQLFPDAATLFRPLIITLAVVGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGI 336
Query 359 FVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMV 418
FVMT+QGQSGS LYM+NHG+STAA+FLIAGFL+++ GSR IA YGGVQKVAP+LAGTF+V
Sbjct 337 FVMTSQGQSGSALYMVNHGISTAALFLIAGFLVSQHGSRLIASYGGVQKVAPVLAGTFLV 396
Query 419 SAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAE 478
+ +AT+SLPGLAPFISEFLVL+GTF+RY + A TALVLSA+Y+LW+YQR+MTGPV +
Sbjct 397 AGLATLSLPGLAPFISEFLVLIGTFTRYPVLAVVAATALVLSAIYVLWMYQRMMTGPVRD 456
Query 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHP 538
GNER+ DLV RE+ VV PLIALLLVLGVYPKP LD+I+PAV +T+TTI Q DP P VA
Sbjct 457 GNERLRDLVPRELAVVTPLIALLLVLGVYPKPALDVIDPAVGHTLTTINQPDPTPKVAE- 515
Query 539 VPAVGASR 546
GA+R
Sbjct 516 ----GAAR 519
>gi|118473357|ref|YP_886412.1| NADH dehydrogenase subunit M [Mycobacterium smegmatis str. MC2
155]
gi|118174644|gb|ABK75540.1| NADH-quinone oxidoreductase, M subunit [Mycobacterium smegmatis
str. MC2 155]
Length=529
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/551 (71%), Positives = 453/551 (83%), Gaps = 31/551 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
V+ PWL+VLW VP+ GA ++ILLP ++ LAKW + VSVLTLAV+ VVA F P+A
Sbjct 2 VSTFPWLTVLWAVPVVGAAVVILLPAAQQVLAKWLALAVSVLTLAVTAVVAIGFDPAAAQ 61
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE H WIP+FG GY LGVDGIA+ LV+LT VL+PLL++AGWNDA+ L+
Sbjct 62 YQFVESHRWIPSFGTGYILGVDGIALALVVLTAVLVPLLIIAGWNDASRQTGLA------ 115
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
R V AY+ALTLA+E MVLMS++ALD+LLFYVFFEAMLIPMYFL
Sbjct 116 ----------------GRSVQAYLALTLAVEGMVLMSLVALDILLFYVFFEAMLIPMYFL 159
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS---GTFDFREIVAGVA 237
IGGFG G RSRAAVKFLLYNLFGGLIMLAAVIGLYVVTA D+ GTFDFREIVA V+
Sbjct 160 IGGFG-GENRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAGSDAFAAGTFDFREIVAAVS 218
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
+G + +PA+ LFLGFMFAFA+KAPLWPFHRWLPDAAVE+TPA+AVLMMAVMDKVGTF
Sbjct 219 SGEFAVNPAIMNFLFLGFMFAFAVKAPLWPFHRWLPDAAVEATPASAVLMMAVMDKVGTF 278
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
GMLRYCLQLFPD STYFRP+++TLA IG++YGA++AIGQTD+MRLIAYTSISHFGFII G
Sbjct 279 GMLRYCLQLFPDASTYFRPVVITLAAIGIVYGAVLAIGQTDVMRLIAYTSISHFGFIILG 338
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IFVMT+QGQSGSTLYM+NHG+STAA+FLIAGFL++RRGSR I YGGVQKVAP+LAGTF+
Sbjct 339 IFVMTSQGQSGSTLYMINHGISTAALFLIAGFLVSRRGSRLIDSYGGVQKVAPVLAGTFL 398
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPV- 476
V+ +AT+SLPGLAPFISEFLVL+GTF+RY + A F TALVLSAVY+LW YQR+MTGPV
Sbjct 399 VAGLATLSLPGLAPFISEFLVLIGTFTRYPVVAVFAATALVLSAVYILWTYQRMMTGPVR 458
Query 477 ---AEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAP 533
+G+ + DLV RE++VVAPL+ALLLVLG+YPKP LD+INPAVE+T+TTIGQ DP P
Sbjct 459 DGIGDGDRPVRDLVPRELVVVAPLLALLLVLGIYPKPALDVINPAVEHTLTTIGQTDPEP 518
Query 534 SVAHPVPAVGA 544
+V P A GA
Sbjct 519 TVP-PTIAEGA 528
>gi|120402871|ref|YP_952700.1| NADH dehydrogenase subunit M [Mycobacterium vanbaalenii PYR-1]
gi|119955689|gb|ABM12694.1| NADH dehydrogenase subunit M [Mycobacterium vanbaalenii PYR-1]
Length=526
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/558 (67%), Positives = 440/558 (79%), Gaps = 42/558 (7%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
V + P L+ LW VP+ GAV+++LLP R LAKW + VS++ L V+ V+A F P+ +
Sbjct 2 VTSFPVLTALWAVPMVGAVVVMLLPAAARGLAKWVALSVSLIVLGVAAVIAVGFDPAGDQ 61
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
+QFVE + WIP+FG GY LGVDGIA+ LV+LT VL+PLL++AGWNDA D
Sbjct 62 FQFVENYRWIPSFGTGYILGVDGIALALVVLTAVLLPLLIMAGWNDARDE---------- 111
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
S GG R VH Y AL LA+E MVL+S+++LD+LLFYVFFEAMLIPMYFL
Sbjct 112 ---------LSWGG---RSVHIYFALILAVEGMVLISLVSLDILLFYVFFEAMLIPMYFL 159
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTA---QYDSGTFDFREIVAGVA 237
IGGFG GA RSRAAVKFLLYNLFGGLIMLA+V+GLYV TA +D+GTFDFR IVA VA
Sbjct 160 IGGFG-GADRSRAAVKFLLYNLFGGLIMLASVVGLYVATAGSDAFDAGTFDFRAIVAAVA 218
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
G + +P V LF GFMFAFA+KAPLWPFHRWLPDAAVE+TPA+AVLMMA+MDKVGTF
Sbjct 219 GGEFVVNPVVMHLLFGGFMFAFAVKAPLWPFHRWLPDAAVEATPASAVLMMAIMDKVGTF 278
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
GM+RYCL LFPD ++YF LI+TLA+IG++YGA+VAIGQTD+MRLIAYTSISHFGFII G
Sbjct 279 GMIRYCLPLFPDSASYFSGLIITLAVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILG 338
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IFVMTTQGQSGSTLYM+NHG+STAA+FLIAGFL++RRGSR I YGGVQK+AP+LAGTF+
Sbjct 339 IFVMTTQGQSGSTLYMVNHGISTAALFLIAGFLVSRRGSRLINAYGGVQKLAPVLAGTFL 398
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGP-- 475
V+ +AT+SLPGLAPFISEFLVL+GTF+RY + A +ALVLSA+Y+LW+YQR+MTGP
Sbjct 399 VAGLATLSLPGLAPFISEFLVLIGTFTRYPVFAVLAASALVLSAIYVLWMYQRMMTGPAP 458
Query 476 --VAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAP 533
+ EG +I DLV RE+ VVAPLIALLLVLGVYPKP LD+INPAV +T+TTI Q DPAP
Sbjct 459 LSLVEGEHKIRDLVPREIAVVAPLIALLLVLGVYPKPALDVINPAVTHTLTTIEQPDPAP 518
Query 534 SVAHPVPAVGASRTAEGP 551
R AEGP
Sbjct 519 ------------RMAEGP 524
>gi|111022884|ref|YP_705856.1| NADH dehydrogenase subunit M [Rhodococcus jostii RHA1]
gi|110822414|gb|ABG97698.1| probable NADH dehydrogenase subunit M [Rhodococcus jostii RHA1]
Length=523
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/549 (68%), Positives = 441/549 (81%), Gaps = 29/549 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
++ PWL+ LW++PL GA +++ LP +R LAK + VSV+ L +++V+A F P+ E
Sbjct 1 MSGFPWLTALWVLPLVGAGVVLALPVHKRALAKSVAVGVSVVVLCLAVVLAIRFDPTGEQ 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE H+WIPAFG Y LG+DGIA+VLVLLTT+L+PLLL+AGWND A D Y
Sbjct 61 YQFVESHAWIPAFGTRYILGLDGIALVLVLLTTILVPLLLLAGWNDGDTAPD-------Y 113
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
QR R H YVALTL +E+MV++S ALDVLLFY+FFEAMLIPMYFL
Sbjct 114 GQR--------------RMAHTYVALTLMVEAMVIVSFAALDVLLFYIFFEAMLIPMYFL 159
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS---GTFDFREIVAGVA 237
IGGFG G GR+ AAVKFLLYNLFGGLIMLAAVIG+YVVTA+ D+ GTFDFR IVA
Sbjct 160 IGGFG-GVGRTYAAVKFLLYNLFGGLIMLAAVIGVYVVTARQDAFGGGTFDFRVIVAE-- 216
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
ADP V KALFLGFMFAFA+KAPLWPFH WLP AAVE+TPA+AVLMMAV+DKVGTF
Sbjct 217 --GLDADPGVLKALFLGFMFAFAVKAPLWPFHTWLPGAAVEATPASAVLMMAVVDKVGTF 274
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
GMLRYCLQ+FP+ S YF P + LA+IG+IYGA++AIGQTD+MRLIAYTSISHFGFII G
Sbjct 275 GMLRYCLQMFPEASAYFAPFVTVLAVIGIIYGAVLAIGQTDVMRLIAYTSISHFGFIILG 334
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IF MT+QGQ+GSTLYM+NHG+STAA+FLIAGFL++RRG+R IADYGGVQKVAP++AGTF+
Sbjct 335 IFAMTSQGQAGSTLYMVNHGISTAALFLIAGFLVSRRGTRLIADYGGVQKVAPVMAGTFL 394
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVA 477
V+ +AT+SLPGLAPFISEFLVL+GTFSRY +AA ALVL+A+Y+LWLYQR+MTGP+
Sbjct 395 VAGLATLSLPGLAPFISEFLVLVGTFSRYQIAAVVATFALVLAAIYVLWLYQRMMTGPLK 454
Query 478 EGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAH 537
EGNE + DLV RE+ VVAPLIALLLVLGVYPKPVLD+I PAV + + T+GQHDPAP+VA
Sbjct 455 EGNETVRDLVRREIAVVAPLIALLLVLGVYPKPVLDVITPAVSHVLVTVGQHDPAPTVAG 514
Query 538 PVPAVGASR 546
P G R
Sbjct 515 QDPQGGTHR 523
>gi|315445441|ref|YP_004078320.1| NADH dehydrogenase subunit M [Mycobacterium sp. Spyr1]
gi|315263744|gb|ADU00486.1| NADH dehydrogenase subunit M [Mycobacterium sp. Spyr1]
Length=525
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/556 (66%), Positives = 439/556 (79%), Gaps = 42/556 (7%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+ LW+VP+ GAV ++LLP R LAKW +VVS++ LAV+ V+A F P+ + +Q
Sbjct 3 SFPLLTALWVVPMVGAVAVLLLPAAARHLAKWTALVVSLVVLAVTGVIAVGFDPAGDQFQ 62
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
FVE + WIP+FG GY LG+DGIA+ LV+LT VL+PLL++AGWNDA D
Sbjct 63 FVENYRWIPSFGTGYILGIDGIALALVVLTAVLLPLLIIAGWNDAGD------------- 109
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
RL G R H Y ALTLA+E MVL+S+++LD+LLFYVFFEAMLIPMYFLIG
Sbjct 110 -----RLSWGG----RSTHIYFALTLAVEGMVLISLVSLDILLFYVFFEAMLIPMYFLIG 160
Query 183 GFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQ---YDSGTFDFREIVAGVAAG 239
GFG G R RAAVKFLLYNL GGLIMLAAV+GLYV TA +D+GTFDFR IVA V++G
Sbjct 161 GFG-GEHRGRAAVKFLLYNLVGGLIMLAAVVGLYVATATSDAFDAGTFDFRAIVAAVSSG 219
Query 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299
+ DP V LF GFMFAFAIKAPLWP HRWLPD+AVE+TPA+AVLMMA+MDKVGTFGM
Sbjct 220 EFAVDPVVMHLLFGGFMFAFAIKAPLWPLHRWLPDSAVEATPASAVLMMAIMDKVGTFGM 279
Query 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359
+RYCL LFPD +T F P I+TLA+IG++YGA+VAIGQTD+MRLIAYTSISHFGFII GIF
Sbjct 280 IRYCLPLFPDSATLFGPAIITLAVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIF 339
Query 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419
VMT+QGQSGSTLYM+NHG+STAA+FLIAGFL++RRGSR I+ YGGVQKVAP+LAGTF+++
Sbjct 340 VMTSQGQSGSTLYMVNHGISTAALFLIAGFLVSRRGSRLISAYGGVQKVAPVLAGTFLIA 399
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPV--- 476
+AT+SLPGLAPFISEFLVL+GTF+RY + A +ALVLSA+Y+LW+YQR+MTGPV
Sbjct 400 GLATLSLPGLAPFISEFLVLIGTFTRYPVFAVLAASALVLSAIYILWMYQRMMTGPVPPS 459
Query 477 -AEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSV 535
+EG RI DLV RE++VV PLIALLL+LG+YPKP LDII+PAV +T+TT+ Q DPAP
Sbjct 460 LSEGENRIRDLVPRELVVVTPLIALLLLLGIYPKPALDIIDPAVAHTLTTVEQTDPAP-- 517
Query 536 AHPVPAVGASRTAEGP 551
R AEGP
Sbjct 518 ----------RMAEGP 523
>gi|226365392|ref|YP_002783175.1| NADH dehydrogenase subunit M [Rhodococcus opacus B4]
gi|226243882|dbj|BAH54230.1| NADH-quinone oxidoreductase chain M [Rhodococcus opacus B4]
Length=522
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/546 (69%), Positives = 440/546 (81%), Gaps = 29/546 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
++ PWL+ LW++PL GA +++ LP RR LAK G+ VSV+ L +++V+A F P+ E
Sbjct 1 MSGFPWLTALWVLPLVGAGVVLALPVDRRALAKTVGVGVSVVVLCLAVVLAIRFDPTGEQ 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE H+WIPAFG Y LG+DGIA+VLVLLT VL+PLLL+AGWND A D
Sbjct 61 YQFVESHAWIPAFGTRYILGLDGIALVLVLLTAVLVPLLLLAGWNDGDSAADYG------ 114
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
R R H YVALTL +E+MV++S ALDVLLFY+FFEAMLIPMYFL
Sbjct 115 ---------------RRRMAHTYVALTLMVEAMVIVSFTALDVLLFYIFFEAMLIPMYFL 159
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS---GTFDFREIVAGVA 237
IGGFG GAGRS AAVKFLLYNLFGGLIMLAAVIGLYVVTA+ D+ GTFDFR IVA
Sbjct 160 IGGFG-GAGRSYAAVKFLLYNLFGGLIMLAAVIGLYVVTARQDAFGGGTFDFRVIVAE-- 216
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
ADP V KALFLGFMFAFA+KAPLWPFH WLP AAVE+TPA+AVLMMAV+DKVGTF
Sbjct 217 --GLDADPGVLKALFLGFMFAFAVKAPLWPFHTWLPGAAVEATPASAVLMMAVVDKVGTF 274
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
GMLR+CLQ+FPD S YF P + LA+IG+IYGA++AIGQTD+MRLIAYTSISHFGFII G
Sbjct 275 GMLRFCLQMFPDASAYFAPFVTVLAVIGIIYGAVLAIGQTDVMRLIAYTSISHFGFIILG 334
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IF MT+QGQ+GSTLYM+NHG+STAA+FLIAGFL++RRG+R IADYGGVQKVAP++AGTF+
Sbjct 335 IFAMTSQGQAGSTLYMVNHGISTAALFLIAGFLVSRRGTRLIADYGGVQKVAPVMAGTFL 394
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVA 477
V+ +AT+SLPGLAPFISEFLVL+GTFSRY +AA ALVL+A+Y+LWLYQR+MTGP+
Sbjct 395 VAGLATLSLPGLAPFISEFLVLVGTFSRYRIAAVVATFALVLAAIYVLWLYQRMMTGPLK 454
Query 478 EGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAH 537
EGNE + DLV RE+ VVAPLIALLLVLGVYPKPVLD+I PAV + + T+GQHDPAP+VA
Sbjct 455 EGNETVRDLVRREIAVVAPLIALLLVLGVYPKPVLDVITPAVGHVLVTVGQHDPAPTVAG 514
Query 538 PVPAVG 543
P P G
Sbjct 515 PDPEGG 520
>gi|145225072|ref|YP_001135750.1| NADH dehydrogenase subunit M [Mycobacterium gilvum PYR-GCK]
gi|145217558|gb|ABP46962.1| NADH dehydrogenase subunit M [Mycobacterium gilvum PYR-GCK]
Length=511
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/544 (66%), Positives = 430/544 (80%), Gaps = 42/544 (7%)
Query 15 LAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFG 74
+ GAV ++LLP R LAKW +VVS++ LAV+ V+A F P+ + +QFVE + WIP+FG
Sbjct 1 MVGAVAVLLLPAAARHLAKWTALVVSLVVLAVTGVIAVGFDPAGDQFQFVENYRWIPSFG 60
Query 75 AGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGG 134
GY LG+DGIA+ LV+LT VL+PLL++AGWNDA D RL G
Sbjct 61 TGYILGIDGIALALVVLTAVLLPLLIIAGWNDAGD------------------RLSWGG- 101
Query 135 ERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAA 194
R H Y ALTLA+E MVL+S+++LD+LLFYVFFEAMLIPMYFLIGGFG G R RAA
Sbjct 102 ---RSTHIYFALTLAVEGMVLISLVSLDILLFYVFFEAMLIPMYFLIGGFG-GEHRGRAA 157
Query 195 VKFLLYNLFGGLIMLAAVIGLYVVTAQ---YDSGTFDFREIVAGVAAGRYGADPAVFKAL 251
VKFLLYNL GGLIMLAAV+GLYV TA +D+GTFDFR IVA V++G + DP V L
Sbjct 158 VKFLLYNLVGGLIMLAAVVGLYVATATSDAFDAGTFDFRAIVAAVSSGEFAVDPVVMHLL 217
Query 252 FLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPS 311
F GFMFAFAIKAPLWP HRWLPD+AVE+TPA+AVLMMA+MDKVGTFGM+RYCL LFPD +
Sbjct 218 FGGFMFAFAIKAPLWPLHRWLPDSAVEATPASAVLMMAIMDKVGTFGMIRYCLPLFPDSA 277
Query 312 TYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTL 371
T F P I+TLA+IG++YGA+VAIGQTD+MRLIAYTSISHFGFII GIFVMT+QGQSGSTL
Sbjct 278 TLFGPAIITLAVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTSQGQSGSTL 337
Query 372 YMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAP 431
YM+NHG+STAA+FLIAGFL++RRGSR I+ YGGVQKVAP+LAGTF+++ +AT+SLPGLAP
Sbjct 338 YMVNHGISTAALFLIAGFLVSRRGSRLISAYGGVQKVAPVLAGTFLIAGLATLSLPGLAP 397
Query 432 FISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPV----AEGNERIGDLV 487
FISEFLVL+GTF+RY + A +ALVLSA+Y+LW+YQR+MTGPV +EG RI DLV
Sbjct 398 FISEFLVLIGTFTRYPVFAVLAASALVLSAIYILWMYQRMMTGPVPPSLSEGENRIRDLV 457
Query 488 GREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAHPVPAVGASRT 547
RE++VV PLIALLL+LG+YPKP LDII+PAV +T+TT+ Q DPAP R
Sbjct 458 PRELVVVTPLIALLLLLGIYPKPALDIIDPAVAHTLTTVEQTDPAP------------RM 505
Query 548 AEGP 551
AEGP
Sbjct 506 AEGP 509
>gi|312139320|ref|YP_004006656.1| NADH dehydrogenase (quinone) chain m nuom [Rhodococcus equi 103S]
gi|311888659|emb|CBH47971.1| NADH dehydrogenase (quinone) chain M NuoM [Rhodococcus equi 103S]
Length=526
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/542 (67%), Positives = 426/542 (79%), Gaps = 28/542 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+N PWL+ LWL+PLAGA+ LP RR +W +VV TLA+++V+A F+P+ E
Sbjct 1 MNGFPWLTALWLLPLAGALAAAALPARRRTAVRWLALVVGFATLAIAVVLAVRFEPAGER 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE HSWIPAFG Y LG+DGIA+ LVLLT +L+PLLL+AGW D ADD P
Sbjct 61 YQFVESHSWIPAFGTRYELGLDGIALALVLLTAILVPLLLLAGWRD-VPADDARP----- 114
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
RG HAYVAL L +ESMVLMS +ALD+LLFYV FEAMLIPMYFL
Sbjct 115 -----------------RGTHAYVALILVVESMVLMSFLALDILLFYVLFEAMLIPMYFL 157
Query 181 IGGFGQ-GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS----GTFDFREIVAG 235
IGG+GQ G GRSRAAVKFLLYNL GGLIMLAAVIGLYVVTA DS GTFDFR IV
Sbjct 158 IGGYGQPGPGRSRAAVKFLLYNLLGGLIMLAAVIGLYVVTAGADSPFTSGTFDFRAIVDA 217
Query 236 VAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVG 295
V+ G V ALFLGFMFAFA+KAPLWP H WLPDAAV+STP TAVLMMAV+DKVG
Sbjct 218 VSTGELTMSGPVANALFLGFMFAFAVKAPLWPLHSWLPDAAVQSTPVTAVLMMAVVDKVG 277
Query 296 TFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFII 355
TF MLRYCLQLFPD + YF PL+VTLA++ ++YGA++AIGQTD+MRLIAYTSISHFGFI+
Sbjct 278 TFAMLRYCLQLFPDAAQYFAPLVVTLAVVSIVYGALLAIGQTDVMRLIAYTSISHFGFIV 337
Query 356 AGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGT 415
G+F MT+QGQSGSTLYM+NHG STAA+ L+AGFL+ RRG+R IADYGGVQKVAP+LAGT
Sbjct 338 LGVFAMTSQGQSGSTLYMVNHGFSTAALMLVAGFLVTRRGTRVIADYGGVQKVAPLLAGT 397
Query 416 FMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGP 475
F+++ +AT+SLPGLAPF+SEFLVL+GT++RY AA ALVL+A+Y+LWLYQR+MTGP
Sbjct 398 FLIAGLATLSLPGLAPFVSEFLVLIGTYTRYPAAAVVATVALVLAALYVLWLYQRMMTGP 457
Query 476 VAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSV 535
VA G +RI DL RE++VV PLIALLLVLGVYPKPVLD++ PAV +T+TTI + DPAP V
Sbjct 458 VASGTDRIRDLRRRELVVVTPLIALLLVLGVYPKPVLDVVTPAVADTLTTIDRQDPAPVV 517
Query 536 AH 537
A
Sbjct 518 AE 519
>gi|54024625|ref|YP_118867.1| NADH dehydrogenase subunit M [Nocardia farcinica IFM 10152]
gi|54016133|dbj|BAD57503.1| putative NADH dehydrogenase I chain M [Nocardia farcinica IFM
10152]
Length=543
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/542 (65%), Positives = 424/542 (79%), Gaps = 35/542 (6%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
V++ PWL++LWL+P+AGA+ ++ +P RR LA+ + VSV L V+ +A F+P
Sbjct 6 VSDFPWLTILWLLPVAGALAVLAVPAERRTLARGLALAVSVGVLGVAAGLAVAFEPGGAQ 65
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE WIPAFGAGYTLG+DGIA+VLV+LT L+PLL++AGW+D D SGR
Sbjct 66 YQFVESRQWIPAFGAGYTLGLDGIALVLVVLTAALVPLLILAGWHD-----DREVGSGR- 119
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
R H YVALTL +E+MVLMS +ALD+LLFYVFFEAMLIPMYFL
Sbjct 120 -----------------RVAHTYVALTLLVEAMVLMSFLALDILLFYVFFEAMLIPMYFL 162
Query 181 IGGFGQGAGR-------SRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYD-----SGTFD 228
IGGFG G SRAAVKFLLYNL GGLIMLAAVIGLYV+TA+ GTFD
Sbjct 163 IGGFGPRTGDLAARATRSRAAVKFLLYNLLGGLIMLAAVIGLYVLTARAGLGPDGGGTFD 222
Query 229 FREIVAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMM 288
R +VA +G GA PAV ALFLGFMFAFA+KAPLWP H WLPDAAV +TP++AVLMM
Sbjct 223 LRTVVAAANSGALGAGPAVLNALFLGFMFAFAVKAPLWPLHTWLPDAAVAATPSSAVLMM 282
Query 289 AVMDKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSI 348
AV+DKVGTFGMLR+CL LFP S + PL++TLA+IG++YGA++AIGQTD+MRLIAYTSI
Sbjct 283 AVVDKVGTFGMLRFCLTLFPGASQTYAPLVITLAVIGILYGALLAIGQTDVMRLIAYTSI 342
Query 349 SHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKV 408
SHFGFII GIF MT+Q QSG+TLYM+NHG+STAA+FLIAGFL++RRG+R IADYGGVQKV
Sbjct 343 SHFGFIILGIFAMTSQSQSGATLYMVNHGISTAALFLIAGFLVSRRGTRLIADYGGVQKV 402
Query 409 APILAGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLY 468
AP+LAGTF V+ +AT+SLPGLAPF+SEFLVL+GTFSRY +AA F ALVL+A+Y+LWLY
Sbjct 403 APVLAGTFFVAGLATLSLPGLAPFVSEFLVLVGTFSRYQVAAVFATGALVLAAIYVLWLY 462
Query 469 QRVMTGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQ 528
QR+MTGPV GNE++ DLV RE++VVAPLIA L+ LGVYPK VLD+++PAV T+TTIG+
Sbjct 463 QRMMTGPVKAGNEKLPDLVPRELLVVAPLIAGLVFLGVYPKAVLDVVDPAVGQTLTTIGR 522
Query 529 HD 530
D
Sbjct 523 QD 524
>gi|333922090|ref|YP_004495671.1| putative NADH dehydrogenase subunit M [Amycolicicoccus subflavus
DQS3-9A1]
gi|333484311|gb|AEF42871.1| putative NADH dehydrogenase subunit M [Amycolicicoccus subflavus
DQS3-9A1]
Length=531
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/539 (63%), Positives = 419/539 (78%), Gaps = 21/539 (3%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+N+ PWL+ LW+ PL GA+ I+ +P R+LAK + S++ L + + + F P+ E
Sbjct 1 MNSFPWLTALWVTPLIGALAIMFVPAPARQLAKSIALGASIVVLGIVVALLVSFDPAGEQ 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE +WIPA GA YTLG+DGI ++LVLLT L+PLLL+A W D DD S G +
Sbjct 61 YQFVESRTWIPALGASYTLGLDGIGLILVLLTAALMPLLLLAAWRD----DDDSLPGGGF 116
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
P R P H YVAL L +++MV+++ +LD+LLFY+FFEAMLIPMYFL
Sbjct 117 PGRRRP-------------THTYVALMLMVQAMVMVTFTSLDILLFYIFFEAMLIPMYFL 163
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTA---QYDSGTFDFREIVAGVA 237
IGGFG G R+ AAVKFLLYNLFGGLIMLAAVIGL+VVTA + GTFDFR +VA V+
Sbjct 164 IGGFG-GPNRAAAAVKFLLYNLFGGLIMLAAVIGLFVVTADIGENGRGTFDFRTVVAAVS 222
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
G G DPA+ K LFLGF FAFA+KAPLWPFH WLP AAV++TPA+AVLMMA++DKVGTF
Sbjct 223 TGELGIDPAIAKLLFLGFTFAFAVKAPLWPFHTWLPGAAVQATPASAVLMMAIVDKVGTF 282
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
MLRY LQLFPD S YF PLI+TLA+IG+IYGA++AI QTD+MRLIAYTSISHFGFII G
Sbjct 283 AMLRYSLQLFPDASQYFAPLIITLAVIGIIYGAVLAIAQTDVMRLIAYTSISHFGFIILG 342
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IF MT+Q Q+GS LYM+NHG++TAA+FL+AGFL+ RRG+R+I+DYGGVQKVAPI+AG+F+
Sbjct 343 IFAMTSQSQAGSALYMVNHGVATAALFLVAGFLVTRRGTRAISDYGGVQKVAPIMAGSFL 402
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVA 477
V+ +AT+SLPGLAPFISEFLVL+GTF RY +AA F T VL+A+Y+LW YQR+M GPV
Sbjct 403 VAGLATLSLPGLAPFISEFLVLIGTFGRYPVAAIFATTTFVLAAIYILWTYQRMMAGPVT 462
Query 478 EGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVA 536
GNE I DL RE V+ PLIA+L+VLGVYPKP LD+I PAVE+T+TT+ DPAP++A
Sbjct 463 TGNEHIRDLRLREAAVMGPLIAVLIVLGVYPKPALDVITPAVEHTLTTVHLQDPAPALA 521
>gi|325676671|ref|ZP_08156346.1| NADH-quinone oxidoreductase subunit M [Rhodococcus equi ATCC
33707]
gi|325552526|gb|EGD22213.1| NADH-quinone oxidoreductase subunit M [Rhodococcus equi ATCC
33707]
Length=526
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/542 (67%), Positives = 425/542 (79%), Gaps = 28/542 (5%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+N PWL+ LWL+PLAGAV LP R+ A+W +VV TLA+++++A F+P E
Sbjct 1 MNGFPWLTALWLLPLAGAVAAAALPARRKTAARWLALVVGSATLAIAVLLAVRFEPGGER 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
YQFVE HSWIPAFG Y LG+DGIA+ LVLLT VL+PLLL+AGW D DADD P
Sbjct 61 YQFVESHSWIPAFGTRYDLGLDGIALALVLLTAVLVPLLLLAGWRD-VDADDTRP----- 114
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
R H YVAL L +ESMVLMS +ALD+LLFYV FEAMLIPMYFL
Sbjct 115 -----------------RATHLYVALILVVESMVLMSFLALDILLFYVLFEAMLIPMYFL 157
Query 181 IGGFGQ-GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDS----GTFDFREIVAG 235
IGG+GQ G GRSRAAVKFLLYNL GGLIMLAAVIGLYVVTA DS GTFDFR IV
Sbjct 158 IGGYGQPGPGRSRAAVKFLLYNLLGGLIMLAAVIGLYVVTAGADSPFTSGTFDFRAIVDA 217
Query 236 VAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVG 295
V+ G V ALFLGFMFAFA+KAPLWP H WLPDAAV+STP TAVLMMAV+DKVG
Sbjct 218 VSTGELTMSGPVANALFLGFMFAFAVKAPLWPLHSWLPDAAVQSTPVTAVLMMAVVDKVG 277
Query 296 TFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFII 355
TF MLRYCLQLFPD + YF PL+VTLA++ ++YGA++AIGQTD+MRLIAYTSISHFGFI+
Sbjct 278 TFAMLRYCLQLFPDAAQYFAPLVVTLAVVSIVYGALLAIGQTDVMRLIAYTSISHFGFIV 337
Query 356 AGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGT 415
G+F MT+QGQSGSTLYM+NHG STAA+ L+AGFL+ RRG+R IADYGGVQKVAP+LAGT
Sbjct 338 LGVFAMTSQGQSGSTLYMVNHGFSTAALMLVAGFLVTRRGTRVIADYGGVQKVAPLLAGT 397
Query 416 FMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGP 475
F+++ +AT+SLPGLAPF+SEFLVL+GT++RY AA ALVL+A+Y+LWLYQR+MTGP
Sbjct 398 FLIAGLATLSLPGLAPFVSEFLVLIGTYTRYPAAAVVATVALVLAALYVLWLYQRMMTGP 457
Query 476 VAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSV 535
VA G +RI DL RE++VV PLIALLLVLGVYPKPVLD++ PAV +T+TTI + DPAP V
Sbjct 458 VASGTDRIRDLRRRELVVVTPLIALLLVLGVYPKPVLDVVTPAVADTLTTIDRQDPAPVV 517
Query 536 AH 537
A
Sbjct 518 AE 519
>gi|169629232|ref|YP_001702881.1| NADH dehydrogenase subunit M [Mycobacterium abscessus ATCC 19977]
gi|169241199|emb|CAM62227.1| NADH-quinone oxidoreductase, M subunit NuoM [Mycobacterium abscessus]
Length=535
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/538 (66%), Positives = 422/538 (79%), Gaps = 29/538 (5%)
Query 7 LSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEK 66
++ LWL+PL GA I++LP +R LAK+ + S+L L V++ VA F P YQFVE
Sbjct 7 VTALWLIPLVGAAAILVLPAHQRTLAKYTALGTSLLVLIVAVGVAIAFDPVGPQYQFVES 66
Query 67 HSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAP 126
SWIPAFG Y +G+DGI + LVLLTT L+P+LL+AGWND +A Y RP
Sbjct 67 VSWIPAFGMKYAVGLDGIGLALVLLTTGLLPVLLLAGWNDGAEAPG-------YGHRPLA 119
Query 127 PRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQ 186
R Y+AL L +E+MVL+S ALDVLLFY+FFEAMLIPMYFLIGGFG
Sbjct 120 QR--------------YMALMLIVEAMVLLSFSALDVLLFYIFFEAMLIPMYFLIGGFGS 165
Query 187 GAG----RSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQ----YDSGTFDFREIVAGVAA 238
RSRAAVKFL+YNLFGGL+MLAAVIGLYVVTAQ GTFD R+I VA
Sbjct 166 THSDVKQRSRAAVKFLMYNLFGGLVMLAAVIGLYVVTAQSPAGEHGGTFDLRDITEMVAT 225
Query 239 GRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFG 298
G G DP + KALFLGFMFAFA+KAPLWP H WLPDAAV +TP++AVLMMAV+DKVGTF
Sbjct 226 GTLGIDPGLAKALFLGFMFAFAVKAPLWPLHTWLPDAAVHATPSSAVLMMAVVDKVGTFA 285
Query 299 MLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGI 358
MLRYC+QLFPD S YF P+IVTLA+IG++YGA+VAIGQTD+MRLIAYTSISHFGFII GI
Sbjct 286 MLRYCVQLFPDASRYFTPVIVTLAVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGI 345
Query 359 FVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMV 418
F MT+QGQSGSTLYM+NHG+STAA+ L+AGFL+ R+GSR IA YGGVQKVAP+LAG+F+V
Sbjct 346 FAMTSQGQSGSTLYMVNHGISTAALMLVAGFLVTRKGSRLIASYGGVQKVAPVLAGSFLV 405
Query 419 SAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAE 478
+ +AT+SLPGLAPFISEFLVL+GTF+RY +AAA V ALVL+A+Y+LW+YQR+MTGP+A
Sbjct 406 AGLATLSLPGLAPFISEFLVLVGTFTRYPVAAACAVVALVLAAIYVLWMYQRMMTGPLAP 465
Query 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVA 536
GNE IGDL RE+ VVAPL+ALLLVLG+YPKP+LDI+NPAVE T+ T+ + DP P+VA
Sbjct 466 GNETIGDLKRRELTVVAPLVALLLVLGIYPKPLLDIVNPAVEQTLRTVNEKDPPPTVA 523
>gi|262200409|ref|YP_003271617.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gordonia
bronchialis DSM 43247]
gi|262083756|gb|ACY19724.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gordonia
bronchialis DSM 43247]
Length=535
Score = 636 bits (1641), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 356/546 (66%), Positives = 424/546 (78%), Gaps = 24/546 (4%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
N PWL++LW+ P GA+L++ +P R +AK + VSVL L ++I +A F P+ YQ
Sbjct 2 NTPWLTILWVAPAIGALLVLAIPNRRPEIAKDIALAVSVLVLVLAIGLAVGFDPNGARYQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
FVE HSWIPAFG Y LG+DGI +VLVLLT L+PLL++AGW DA +A L A GR +
Sbjct 62 FVEDHSWIPAFGTRYALGLDGIGLVLVLLTAALLPLLILAGWRDADEAGSLDAAGGRVQK 121
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
P H Y ALTLA+E+MVLMS +ALD+LLFY+FFEAMLIPMYFLIG
Sbjct 122 TP----------------HTYFALTLAVEAMVLMSFVALDILLFYIFFEAMLIPMYFLIG 165
Query 183 GFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYD-----SGTFDFREIVAGVA 237
GFG G RS AAVKFLLYNLFGGLIMLAAVIGLYVVT Q +GTF R I VA
Sbjct 166 GFGNGPRRSAAAVKFLLYNLFGGLIMLAAVIGLYVVTVQQGVGHNGAGTFSLRTISDAVA 225
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
AG + + K LFLGFMFAFA+KAPLWPFH WLPDAAV +TPA+AVLMMAV+DKVGTF
Sbjct 226 AGDIDSGTGLAKLLFLGFMFAFAVKAPLWPFHSWLPDAAVAATPASAVLMMAVVDKVGTF 285
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
MLR+CLQLFPD S YF PLI LA+IG+IYGA++AIGQTD+MRLIAYTSISHFGFII G
Sbjct 286 AMLRFCLQLFPDASQYFAPLICALAVIGIIYGAVLAIGQTDVMRLIAYTSISHFGFIILG 345
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IF +T+QGQ+GSTLYM+NHGLSTAA+FLIAGFL++RRGSR IADYGGVQKVAP+LAGTF+
Sbjct 346 IFALTSQGQTGSTLYMVNHGLSTAALFLIAGFLVSRRGSRLIADYGGVQKVAPVLAGTFL 405
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVA 477
V+ +AT+SLPGLAPFISEFLVL+GTF+RY +AA ALVLSA+Y+LW YQR+M GP
Sbjct 406 VAGLATLSLPGLAPFISEFLVLIGTFTRYPIAAIIASGALVLSAIYILWTYQRMMGGPPK 465
Query 478 EGNER---IGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPS 534
+ R + DL GRE++VV PLIALL+ LGVYPKP+LDI++PAV +T+TT+G HDP P+
Sbjct 466 LSDVRASSMRDLAGRELVVVVPLIALLIALGVYPKPLLDIVDPAVGHTLTTVGVHDPPPA 525
Query 535 VAHPVP 540
VA P
Sbjct 526 VADSPP 531
>gi|226306202|ref|YP_002766162.1| NADH-quinone oxidoreductase chain M [Rhodococcus erythropolis
PR4]
gi|226185319|dbj|BAH33423.1| NADH-quinone oxidoreductase chain M [Rhodococcus erythropolis
PR4]
Length=534
Score = 625 bits (1613), Expect = 5e-177, Method: Compositional matrix adjust.
Identities = 342/536 (64%), Positives = 410/536 (77%), Gaps = 30/536 (5%)
Query 5 PWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFV 64
P L+ LWL+PL GA +++ LP + AK + VSV L ++ + F +QFV
Sbjct 17 PALTALWLLPLIGAGVVLALPARSYQFAKSLALAVSVAVLVIAGGLGVAFDRGGGQFQFV 76
Query 65 EKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRP 124
E HSWIPAFG YTLG+DGIA+VLVLLT VL+PLLL+AGWND P P
Sbjct 77 ESHSWIPAFGTSYTLGLDGIALVLVLLTAVLVPLLLIAGWNDV-------------PADP 123
Query 125 APPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGF 184
A P+ R H Y AL L +ESMV++S ALD+LLFY+FFEAMLIPMYFLIGGF
Sbjct 124 ASPK---------RMPHTYFALILVVESMVMISFSALDILLFYIFFEAMLIPMYFLIGGF 174
Query 185 GQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQ----YDSGTFDFREIVAGVAAGR 240
G G GRSRAAVKFLLYNL GGL+MLAAVIGLYVVT + + SGTFDFR I + ++G
Sbjct 175 G-GVGRSRAAVKFLLYNLLGGLVMLAAVIGLYVVTTRDESPFTSGTFDFRAIASAASSGE 233
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
G P V ALFLGFMFAFA+KAPLWP H WLPD+AVESTP+TAVLMMAV+DKVGTF M+
Sbjct 234 LGVGPGVLNALFLGFMFAFAVKAPLWPLHSWLPDSAVESTPSTAVLMMAVVDKVGTFAMI 293
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFP+ S+ F P I+TLA+IG++YGAI+AI QTD+MRLIAYTSISHFGFII GIF
Sbjct 294 RYCLQLFPESSSTFAPWIITLAVIGIVYGAILAIAQTDVMRLIAYTSISHFGFIILGIFA 353
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MT+Q Q+GS LYM+NHG+STAA+FLIAGFL+++RG+RSIA YGGVQKVAP+LAGTF+V+
Sbjct 354 MTSQSQAGSALYMVNHGISTAALFLIAGFLVSQRGTRSIAAYGGVQKVAPVLAGTFLVAG 413
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
+AT+SLPGLAPF+SEFLVL+GT+SRY +AA ALVLSA+Y+LWLYQR+M GPV EG
Sbjct 414 LATLSLPGLAPFVSEFLVLIGTYSRYHVAAIAATVALVLSAIYILWLYQRMMGGPVKEGQ 473
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVA 536
I DL RE++VVAPLIALLL+LG+YPKP LD+I PAV +T+ P P VA
Sbjct 474 GTIRDLARRELVVVAPLIALLLLLGIYPKPALDVITPAVSHTVV---YEAPTPLVA 526
>gi|343926364|ref|ZP_08765869.1| NADH-quinone oxidoreductase chain M [Gordonia alkanivorans NBRC
16433]
gi|343763602|dbj|GAA12795.1| NADH-quinone oxidoreductase chain M [Gordonia alkanivorans NBRC
16433]
Length=545
Score = 620 bits (1598), Expect = 2e-175, Method: Compositional matrix adjust.
Identities = 343/544 (64%), Positives = 422/544 (78%), Gaps = 24/544 (4%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
N+PWL++LWL P GA L++ +P R +A+W V+V L +++ +A F P+ + YQ
Sbjct 2 NIPWLTILWLAPAVGAALVLAIPASRPAVARWFAFAVTVGVLVLAVGLAVGFDPAGQRYQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
F E SWIPA G Y LG+DGI +VL+LLT L+PLLL+AGW+DA D+D SGR Q
Sbjct 62 FTEDVSWIPALGTRYALGLDGIGLVLILLTAALLPLLLLAGWHDA-DSDGSLDHSGRRAQ 120
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
+ G H Y+AL LA E+MVLMS +ALD+LLFY+FFEAMLIPMYFLIG
Sbjct 121 K---------------GPHIYLALFLATEAMVLMSFVALDILLFYIFFEAMLIPMYFLIG 165
Query 183 GFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYD-----SGTFDFREIVAGVA 237
GFG G RS AAVKFLLYNLFGGL++LAAVIGLYVV+AQ GTF +IVA V+
Sbjct 166 GFGTGPNRSGAAVKFLLYNLFGGLLLLAAVIGLYVVSAQNGVGADGGGTFALGDIVAAVS 225
Query 238 AGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTF 297
+G+ + K LFLGFMFAFA+KAPLWP H WLPDAAV +TP +AVLMMAV+DKVGTF
Sbjct 226 SGQIDDTTGLAKLLFLGFMFAFAVKAPLWPLHSWLPDAAVAATPTSAVLMMAVIDKVGTF 285
Query 298 GMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAG 357
MLR+CLQLFPD S YF PLI LA++ +IYGA++AIGQTD+MRLIAYTSISHFGFII G
Sbjct 286 AMLRFCLQLFPDASQYFAPLICGLAVVSIIYGAVLAIGQTDVMRLIAYTSISHFGFIILG 345
Query 358 IFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFM 417
IFV+T QGQ+GSTLYM+NHGLSTAA+FLIAGFL+++RGSR IADYGGVQKVAP+LAGTF+
Sbjct 346 IFVLTDQGQTGSTLYMVNHGLSTAALFLIAGFLVSQRGSRLIADYGGVQKVAPVLAGTFL 405
Query 418 VSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVA 477
V+ +AT+SLPGLAPFISEFLVL+GTF+RY +AA +ALVLSA+Y+LW YQR+M GP
Sbjct 406 VAGLATLSLPGLAPFISEFLVLIGTFTRYPIAAVLACSALVLSAIYILWTYQRMMGGPAR 465
Query 478 EGNER---IGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPS 534
+ER I DL GRE+ VV PL+ALL+ LGVYPKP++D+I+PAV++T+TT+G DP P+
Sbjct 466 PDDERSTPIRDLAGRELAVVVPLLALLIALGVYPKPMIDLIDPAVQSTLTTVGVTDPEPA 525
Query 535 VAHP 538
VA P
Sbjct 526 VADP 529
>gi|229490929|ref|ZP_04384764.1| NADH-quinone oxidoreductase, m subunit [Rhodococcus erythropolis
SK121]
gi|229322319|gb|EEN88105.1| NADH-quinone oxidoreductase, m subunit [Rhodococcus erythropolis
SK121]
Length=524
Score = 615 bits (1586), Expect = 7e-174, Method: Compositional matrix adjust.
Identities = 347/536 (65%), Positives = 412/536 (77%), Gaps = 30/536 (5%)
Query 5 PWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFV 64
P L+VLWL+PL GA +++ LP + AK + VSV L V+ V+ F E +QFV
Sbjct 7 PALTVLWLLPLIGAGVVLALPARSYQFAKSLALAVSVAVLVVAAVLGVAFDRGGEQFQFV 66
Query 65 EKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRP 124
E HSWIPAFG YTLG+DGIA+VLVLLT VL+PLLL+AGWND P P
Sbjct 67 ESHSWIPAFGTSYTLGLDGIALVLVLLTAVLVPLLLIAGWNDV-------------PADP 113
Query 125 APPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGF 184
A P+ R H Y AL L +ESMV++S ALD+LLFY+FFEAMLIPMYFLIGGF
Sbjct 114 ASPK---------RMPHTYFALILVVESMVMISFSALDILLFYIFFEAMLIPMYFLIGGF 164
Query 185 GQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQ----YDSGTFDFREIVAGVAAGR 240
G G GRSRAAVKFLLYNL GGL+MLAAVIGLYVVT + + SGTFDFR I + +G
Sbjct 165 G-GVGRSRAAVKFLLYNLLGGLVMLAAVIGLYVVTTRDESPFASGTFDFRAIASAANSGE 223
Query 241 YGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGML 300
G P V ALFLGFMFAFA+KAPLWP H WLPD+AVESTP+TAVLMMAV+DKVGTF M+
Sbjct 224 LGVGPGVLNALFLGFMFAFAVKAPLWPLHSWLPDSAVESTPSTAVLMMAVVDKVGTFAMI 283
Query 301 RYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFV 360
RYCLQLFP+ S+ F P I+TLA+IG++YGAI+AI QTD+MRLIAYTSISHFGFII GIF
Sbjct 284 RYCLQLFPESSSTFAPWIITLAVIGIVYGAILAIAQTDVMRLIAYTSISHFGFIILGIFA 343
Query 361 MTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSA 420
MT+Q Q+GS LYM+NHG+STAA+FLIAGFL+++RG+RSIA YGGVQKVAP+LAGTF+V+
Sbjct 344 MTSQSQAGSALYMVNHGVSTAALFLIAGFLVSQRGTRSIAAYGGVQKVAPVLAGTFLVAG 403
Query 421 MATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGN 480
+AT+SLPGLAPFISEFLVL+GT+SRY +AA ALVLSA+Y+LWLYQR+M GPV EG
Sbjct 404 LATLSLPGLAPFISEFLVLIGTYSRYHVAAIAATAALVLSAIYILWLYQRMMGGPVKEGQ 463
Query 481 ERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVA 536
I DL RE++VVAPLIALLL+LG+YPKP LD+I PAV +T+ P P VA
Sbjct 464 GTIRDLARRELVVVAPLIALLLLLGIYPKPALDVITPAVSHTVV---DEAPTPLVA 516
>gi|337767481|emb|CCB76192.1| NADH-quinone oxidoreductase subunit M [Streptomyces cattleya
NRRL 8057]
Length=544
Score = 571 bits (1471), Expect = 1e-160, Method: Compositional matrix adjust.
Identities = 301/524 (58%), Positives = 372/524 (71%), Gaps = 31/524 (5%)
Query 28 RRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFGAGYTLGVDGIAVV 87
RR AKW + +++TLA++ V A F P YQ E H+WIP+FG Y LGVDGIAV+
Sbjct 27 RRTAAKWVALAFALVTLALAAVDTARFTPGGPRYQLTESHAWIPSFGVRYELGVDGIAVM 86
Query 88 LVLLTTVLIPLLLVAGWNDATDAD-----DLSPASGRYPQRPAPPRLRSSGGERTRGVHA 142
L LLT VL+P+++ AGW+DA + P GRY RP V
Sbjct 87 LTLLTAVLVPVVMAAGWHDADRPSSPAFGEEGPYRGRYHWRP---------------VQG 131
Query 143 YVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFG----------QGAGRSR 192
+ AL L +E+MV++S + DV LFY+FFEAMLIPMYFLIGGFG Q A RS
Sbjct 132 FFALILLVEAMVVISFESTDVFLFYLFFEAMLIPMYFLIGGFGDRAGSRGAEEQAAQRSY 191
Query 193 AAVKFLLYNLFGGLIMLAAVIGLYVVTA-QYDSGTFDFREIVAGVAAGRYGADPAVFKAL 251
AAVKFLLYNL GGL+MLAAVIGLY VTA Q SGTF EI+ A GR + +
Sbjct 192 AAVKFLLYNLAGGLVMLAAVIGLYAVTAHQLGSGTFSLTEILRARAEGRLQFSTTAERWI 251
Query 252 FLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPS 311
FLGF FAFA+KAPLWP H WLP+A EST AVL+ AV+DKVGTF MLRYCLQLFP S
Sbjct 252 FLGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRYCLQLFPGAS 311
Query 312 TYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTL 371
T+ P+++ LA +G++YGA++A+GQ D+ RL+A+ SISHFGFII GIF MT+QGQSG+ L
Sbjct 312 TWATPVVLALAAVGILYGALLAVGQRDIKRLVAFASISHFGFIILGIFAMTSQGQSGAAL 371
Query 372 YMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAP 431
YM+NHG+STAA L+AGFLI+RRGSR IADYGGVQKVAP+LAGTF+V +AT+SLPGLAP
Sbjct 372 YMVNHGISTAAWLLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLVGGLATLSLPGLAP 431
Query 432 FISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNERIGDLVGREM 491
F+SEFLVL+GTF+RY +V +A+Y+L L+QR MTGPV E I DL RE+
Sbjct 432 FVSEFLVLVGTFTRYPALGVVATVGIVFAALYVLVLHQRTMTGPVKEEVAAIKDLGVREL 491
Query 492 IVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSV 535
+VVAPLIALLL LGV+PKPV D+INPAV +T++ + + DPAP +
Sbjct 492 VVVAPLIALLLFLGVFPKPVTDVINPAVRDTLSDVHRTDPAPQI 535
>gi|256396780|ref|YP_003118344.1| proton-translocating NADH-quinone oxidoreductase, chain M [Catenulispora
acidiphila DSM 44928]
gi|256363006|gb|ACU76503.1| proton-translocating NADH-quinone oxidoreductase, chain M [Catenulispora
acidiphila DSM 44928]
Length=526
Score = 566 bits (1458), Expect = 5e-159, Method: Compositional matrix adjust.
Identities = 294/536 (55%), Positives = 392/536 (74%), Gaps = 24/536 (4%)
Query 1 VNNVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEP 60
+++ PWL+ L +VPL G+ + ++ + AK + SV TL + I +A +FK +
Sbjct 1 MSSFPWLTTLGVVPLVGSAAVAVVAKEKSAAAKKIALGFSVATLGIGIAMATQFKKGGDR 60
Query 61 YQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRY 120
+QF E H WI AF Y LGVDGIA+VL+L+T VL+P++++AGW+DA +A A GR
Sbjct 61 FQFTESHQWIKAFNINYGLGVDGIALVLILMTLVLMPVVMLAGWHDADEAQ----ADGR- 115
Query 121 PQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFL 180
R V AY +L L +E+M++ A D+ LFYVFFEAMLIPMYFL
Sbjct 116 -----------------RSVRAYFSLYLLLETMMIGVFAATDLFLFYVFFEAMLIPMYFL 158
Query 181 IGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQY-DSGTFDFREIVAGVAAG 239
IGGFG G RS AAVKFLLY+LFGGL MLAA+IGLYV + ++ +GTFDF+ + VA
Sbjct 159 IGGFG-GPQRSYAAVKFLLYSLFGGLFMLAALIGLYVASGKHLGTGTFDFQTLATAVAHD 217
Query 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299
+ G P + KALFLGF AFA+KAPL+PFH WLPDAA E+TP +AVL++ V+DKVGTFGM
Sbjct 218 QLGISPGLGKALFLGFFVAFAVKAPLFPFHTWLPDAAAEATPGSAVLLVGVLDKVGTFGM 277
Query 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359
LRYCL+LFP S +F PL++ +AI+G +YGA++AIGQTD+ RLIAYTSISHFG I G+F
Sbjct 278 LRYCLELFPGASKFFTPLVIGMAIVGTMYGALLAIGQTDIKRLIAYTSISHFGLITLGVF 337
Query 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419
MT+ GQSG++LYM+NHGLST A+F++AGFLI+RRGS+ I DYGGV KVAP LAG F+++
Sbjct 338 AMTSAGQSGASLYMVNHGLSTGALFIVAGFLISRRGSQLIDDYGGVNKVAPKLAGVFLIA 397
Query 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEG 479
+++++LPGL+ F+SEFLVL+GTF RY A A++L+A+Y+LWLYQR MTGP+ G
Sbjct 398 GLSSLALPGLSSFVSEFLVLVGTFERYKAVAIVATAAIILAALYVLWLYQRTMTGPLKAG 457
Query 480 NERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSV 535
E + DL RE+I VAPLIAL++ LG YPKPVLD++NP+V T+ + + DPAP++
Sbjct 458 LEGMKDLRAREVIAVAPLIALIIGLGFYPKPVLDVVNPSVNTTLQHVHKQDPAPAL 513
>gi|326382751|ref|ZP_08204441.1| NADH:ubiquinone oxidoreductase subunit M [Gordonia neofelifaecis
NRRL B-59395]
gi|326198341|gb|EGD55525.1| NADH:ubiquinone oxidoreductase subunit M [Gordonia neofelifaecis
NRRL B-59395]
Length=555
Score = 560 bits (1444), Expect = 2e-157, Method: Compositional matrix adjust.
Identities = 323/530 (61%), Positives = 394/530 (75%), Gaps = 33/530 (6%)
Query 4 VPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQF 63
VPWL+VLWL+P +V+++LLP R AK G+ ++LTL ++VVA EF +A +Q
Sbjct 19 VPWLTVLWLLPAVASVVVMLLPADRGDNAKKVGLGAALLTLVWAVVVATEFSSNAGGFQL 78
Query 64 VEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQR 123
VE SWIPAFGA YTL +DG+ + L+LLT VL P+LL+AGW DA D D P+S
Sbjct 79 VEDVSWIPAFGARYTLALDGVGLALILLTAVLTPILLLAGWRDA-DPGDTGPSS------ 131
Query 124 PAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGG 183
R R VH YVAL LA+E+MVLMS +A DVL+FY+FFEAML+PMYFLIGG
Sbjct 132 ------------RARRVHIYVALMLAVEAMVLMSFVATDVLMFYIFFEAMLVPMYFLIGG 179
Query 184 FGQGAG--RSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYD-----SGTFDFREIVAGV 236
FG+ RSRAAVKFLLYNLFGGLIMLAAVIGLYVV+A+ +GTFDF E+ A
Sbjct 180 FGRATEEVRSRAAVKFLLYNLFGGLIMLAAVIGLYVVSARSGLGPDGNGTFDFTELAAAA 239
Query 237 AAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGT 296
A GR A LFLGF+FAFA+KAPLWP H WLPDAAV +TPA AV+MMAVMDKVGT
Sbjct 240 ANGRLDASSTTLNLLFLGFLFAFAVKAPLWPLHAWLPDAAVSTTPAAAVMMMAVMDKVGT 299
Query 297 FGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIA 356
F MLR+C+ LFPD S F P I LA++ ++YGA+ AIGQ D+MRLIAYTSISHFGFI+
Sbjct 300 FAMLRFCIGLFPDASATFAPWISALAVVSIVYGAVCAIGQRDVMRLIAYTSISHFGFIVL 359
Query 357 GIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTF 416
G+F +TTQGQSGS LYM+NHGLSTAA+FLIAGFL+++RGS IADYGGVQK+AP+LAGTF
Sbjct 360 GVFALTTQGQSGSALYMVNHGLSTAALFLIAGFLVSQRGSALIADYGGVQKIAPVLAGTF 419
Query 417 MVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPV 476
+++ +AT+SLPGLAPF+SEFLV++GTF+RY +AA +ALVLSAVY+LW YQR+M GP
Sbjct 420 LIAGLATLSLPGLAPFVSEFLVVIGTFTRYPVAAIIASSALVLSAVYILWTYQRMMGGPE 479
Query 477 -------AEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAV 519
A I DL R+ VVAPL+ LLVLG +P+ VLD I+PAV
Sbjct 480 RLSATVDAASTPPIRDLDLRQKAVVAPLLVGLLVLGFFPRLVLDYIDPAV 529
>gi|311897902|dbj|BAJ30310.1| putative NADH-quinone oxidoreductase subunit M [Kitasatospora
setae KM-6054]
Length=537
Score = 559 bits (1440), Expect = 6e-157, Method: Compositional matrix adjust.
Identities = 321/549 (59%), Positives = 390/549 (72%), Gaps = 37/549 (6%)
Query 7 LSVLWLVPLAGAVLIILLPPG----RRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
LS VP AGAVL LP G RRR K + VS TL ++ VAA F+ YQ
Sbjct 5 LSATCAVPAAGAVLTAALPAGTTESRRRTTKAVALAVSAATLGLAAAVAASFETGGARYQ 64
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E +SWI +FG ++LG DGI LVLLT VL+PL+++AGW+DA
Sbjct 65 LTESYSWIRSFGISFSLGADGIGTALVLLTAVLVPLVMLAGWHDAD-------------- 110
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
PA P E R A+ AL LA+ESMVL+S +A DV +FYVFFEAMLIPMYFLIG
Sbjct 111 -PAAPE---GSFESKRRTQAFFALILAVESMVLVSFLATDVFVFYVFFEAMLIPMYFLIG 166
Query 183 GFGQGAG-------RSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAG 235
GFG AG RS AAVKFLLYNL GGL+MLAAVIGLYVV TF +
Sbjct 167 GFGDRAGGPDADRQRSYAAVKFLLYNLLGGLVMLAAVIGLYVVAGDQGHATFSLTGLTDA 226
Query 236 VAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVG 295
+++G+ +P +ALFLGF FAFA+KAPLWP H WLP+A EST TAVL+ AV+DKVG
Sbjct 227 ISSGQLVIEPNAQRALFLGFFFAFAVKAPLWPLHTWLPNAMGESTAGTAVLITAVVDKVG 286
Query 296 TFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFII 355
TF MLR+CL LFPD S F P+I+ LA++G++YGA+VAIGQ D+ RL+AY SISHFGFII
Sbjct 287 TFAMLRFCLGLFPDASKTFAPVIMVLALVGIVYGALVAIGQKDIKRLVAYASISHFGFII 346
Query 356 AGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGT 415
GIF MT+QGQSG+TLYM+NHG+STAA L+AGFLI+RRGSR IADYGGVQKVAP+LAGT
Sbjct 347 LGIFAMTSQGQSGATLYMVNHGISTAAWMLVAGFLISRRGSRLIADYGGVQKVAPVLAGT 406
Query 416 FMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTA---LVLSAVYMLWLYQRVM 472
F++ +AT+SLPGLAPF+SEFLVL+GTFSRY A GV A +VL+A+Y L LYQR M
Sbjct 407 FLIGGLATLSLPGLAPFVSEFLVLVGTFSRY---PALGVVATFGIVLAALYALLLYQRTM 463
Query 473 TGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPA 532
TGPV G E + DL RE+ VVAPL+AL L+LGVYPKP+ D++NPAV++T++ + + DPA
Sbjct 464 TGPVKAGVEGVKDLKVRELAVVAPLVALTLLLGVYPKPLTDLVNPAVDDTLSQVHRTDPA 523
Query 533 PSVAHPVPA 541
P AHPV A
Sbjct 524 P--AHPVAA 530
>gi|302536180|ref|ZP_07288522.1| NADH dehydrogenase subunit M [Streptomyces sp. C]
gi|302445075|gb|EFL16891.1| NADH dehydrogenase subunit M [Streptomyces sp. C]
Length=528
Score = 556 bits (1434), Expect = 3e-156, Method: Compositional matrix adjust.
Identities = 308/542 (57%), Positives = 385/542 (72%), Gaps = 35/542 (6%)
Query 5 PWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFV 64
P L++ VP AGA+L +P RR +AKW ++ S+ TLA++++VA F+P + YQ
Sbjct 4 PLLTLTAAVPAAGAILTAAVPAARRTVAKWLALLFSLATLALAVLVAVRFEPGGDRYQLT 63
Query 65 EKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRP 124
E H+WI FG Y LGVDGI V L+ LT +LIP ++VAGW+DA D L S R+ RP
Sbjct 64 ESHAWIADFGVRYELGVDGIGVALIALTALLIPFVIVAGWHDA---DPLETQSSRW--RP 118
Query 125 APPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGF 184
T+G + AL L +E+MV++S A DV LFY+FFEAMLIPMYFLIGGF
Sbjct 119 ------------TQG---FFALILLVEAMVVISFEATDVFLFYIFFEAMLIPMYFLIGGF 163
Query 185 GQ----------GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVA 234
G A RS AAVKFLLYNL GGLIMLAAVIGLYVV +G F +EI
Sbjct 164 GDRAHAGTDENAAAQRSYAAVKFLLYNLVGGLIMLAAVIGLYVV-----AGNFSLQEIAE 218
Query 235 GVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKV 294
AAG + LFLGF FAFA+KAPLWP H WLP+A EST AVL+ A++DKV
Sbjct 219 ARAAGTLDMATNTERLLFLGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAIVDKV 278
Query 295 GTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFI 354
GTF MLR+CL LFP+ S + P+I+ LA+I ++YGA++A+GQ D+ RLIAY SISHFGFI
Sbjct 279 GTFAMLRFCLGLFPEASKWATPVILVLALISIVYGALLAVGQRDIKRLIAYASISHFGFI 338
Query 355 IAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAG 414
I GIF MT+QGQSG+TLYM+NHG+STAA+ L+AGFLI+RRGSR IADYGGVQKVAP+LAG
Sbjct 339 ILGIFAMTSQGQSGATLYMVNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAG 398
Query 415 TFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG 474
TF++ +AT+SLPGLAPF+SEFLVL+GTF+RY + +VL+A+Y L LYQR MTG
Sbjct 399 TFLIGGLATLSLPGLAPFVSEFLVLVGTFARYPVVGIIATVGIVLAALYTLVLYQRTMTG 458
Query 475 PVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPS 534
PV E + DL RE++VVAPLIALL+ LGVYPK + I+NPAVE+TM+ + Q DP P
Sbjct 459 PVKEEVRSMPDLRARELLVVAPLIALLIGLGVYPKVLTAIVNPAVEHTMSDVKQTDPKPE 518
Query 535 VA 536
V+
Sbjct 519 VS 520
>gi|328884324|emb|CCA57563.1| NADH-ubiquinone oxidoreductase chain M [Streptomyces venezuelae
ATCC 10712]
Length=523
Score = 555 bits (1429), Expect = 1e-155, Method: Compositional matrix adjust.
Identities = 304/543 (56%), Positives = 379/543 (70%), Gaps = 35/543 (6%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+V VP GA+L +P RR AKW ++VS+ TLA++ VV F+P E YQ
Sbjct 2 SFPLLTVTAAVPAVGAILTAAVPAARRTAAKWLALLVSLATLALAAVVFVRFEPGGERYQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E H+WI FG Y LGVDGI V L+ LT +LIP +++AGW+DA D L +S R+
Sbjct 62 LTESHAWIKDFGVRYELGVDGIGVALIALTALLIPFIVLAGWHDA---DPLETSSKRW-- 116
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
R + AL L +E+MV++S A DV LFY+ FEAMLIPMYFLIG
Sbjct 117 ---------------RPTQGFFALILMVEAMVILSFEATDVFLFYILFEAMLIPMYFLIG 161
Query 183 GFGQ----------GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREI 232
GFG A RS AAVKFLLYNL GGLIMLAAVIGLYVV +G F EI
Sbjct 162 GFGDRAHSGSDENAAAQRSYAAVKFLLYNLVGGLIMLAAVIGLYVV-----AGNFSLTEI 216
Query 233 VAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMD 292
A G + + LFLGF FAFA+KAPLWP H WLP+A E+T AVL+ AV+D
Sbjct 217 AEARANGSLEMATSTERWLFLGFFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAVVD 276
Query 293 KVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFG 352
KVGTF MLR+CL LFP+ S + P IV LA+I ++YGA++A+GQ D+ RL+AY SISHFG
Sbjct 277 KVGTFAMLRFCLGLFPEASKWATPAIVVLALISIVYGALLAVGQRDIKRLVAYASISHFG 336
Query 353 FIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPIL 412
FII GIF MTTQGQSG+TLYM+NHG+STAA+ L+AGFLI+RRGSR IADYGGVQKVAP+L
Sbjct 337 FIILGIFAMTTQGQSGATLYMVNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVL 396
Query 413 AGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVM 472
AGTF++ +AT+SLPGLAPF+SEFLVL+GTF+RY +A T +VL+A+Y L LYQR M
Sbjct 397 AGTFLIGGLATLSLPGLAPFVSEFLVLVGTFARYPVAGVIATTGIVLAALYTLVLYQRTM 456
Query 473 TGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPA 532
TGPV E + DL RE+ VV PLIA+L+ LGV+PKP+ D++NPAV++TM+ + Q DP+
Sbjct 457 TGPVKEEVRTLPDLRARELAVVVPLIAVLIFLGVFPKPLTDVVNPAVQHTMSDVQQKDPS 516
Query 533 PSV 535
P V
Sbjct 517 PEV 519
>gi|254382430|ref|ZP_04997789.1| NADH dehydrogenase subunit M [Streptomyces sp. Mg1]
gi|194341334|gb|EDX22300.1| NADH dehydrogenase subunit M [Streptomyces sp. Mg1]
Length=532
Score = 553 bits (1425), Expect = 3e-155, Method: Compositional matrix adjust.
Identities = 311/550 (57%), Positives = 380/550 (70%), Gaps = 45/550 (8%)
Query 12 LVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIP 71
+VP GAVL +P RR AKW ++ S+ TLA++++VA F+P YQ E H+WIP
Sbjct 1 MVPAVGAVLTAAVPAARRTAAKWLALLFSLATLALAVLVAVRFEPGGARYQLTESHAWIP 60
Query 72 AFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRS 131
FG Y LGVDGI V L+ LT VL+P +++AGW+DA D L S R+
Sbjct 61 DFGVRYELGVDGIGVALIALTAVLMPFIILAGWHDA---DPLENKSRRW----------- 106
Query 132 SGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQ----- 186
R + AL L +E+MV++S A DV LFYVFFEAMLIPMYFLIGGFG
Sbjct 107 ------RPTQGFFALILLVEAMVIISFEATDVFLFYVFFEAMLIPMYFLIGGFGDRATSS 160
Query 187 --------------GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREI 232
A RS AAVKFLLYNL GGLIMLAAVIGLYVV +G F +EI
Sbjct 161 RSAAAAAGGSDENAAAQRSYAAVKFLLYNLAGGLIMLAAVIGLYVV-----AGNFSLQEI 215
Query 233 VAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMD 292
A AAG + LFLGF FAFA+KAPLWP H WLP+A EST AVL+ AV+D
Sbjct 216 TAARAAGTLDMAANTERLLFLGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAVVD 275
Query 293 KVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFG 352
KVGTF MLR+CL LFPD S + P+I+ LA+I ++YGA++A+GQ D+ RL+AY SISHFG
Sbjct 276 KVGTFAMLRFCLGLFPDASKWATPVILVLALISIVYGALLAVGQRDIKRLVAYASISHFG 335
Query 353 FIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPIL 412
FII GIF MT+QGQSG+TLYM+NHGLSTAA+ L+AGFLI+RRGSR IADYGGVQKVAP+L
Sbjct 336 FIILGIFAMTSQGQSGATLYMVNHGLSTAALMLVAGFLISRRGSRLIADYGGVQKVAPVL 395
Query 413 AGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVM 472
AGTF++ +AT+SLPGLAPF+SEFLVL+GT++RY + +VL+A+Y L LYQR M
Sbjct 396 AGTFLIGGLATLSLPGLAPFVSEFLVLVGTYARYPVVGIIATVGIVLAALYTLVLYQRTM 455
Query 473 TGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPA 532
TGPV E + DL REM+VVAPLIALL+ LGVYPK + DI+NPAVE TM+ + + DP
Sbjct 456 TGPVKEEVRAMPDLHLREMLVVAPLIALLIGLGVYPKVLTDIVNPAVEYTMSDVKRTDPK 515
Query 533 PSVA-HPVPA 541
P VA VPA
Sbjct 516 PEVAVEAVPA 525
>gi|345008480|ref|YP_004810834.1| proton-translocating NADH-quinone oxidoreductase subunit M [Streptomyces
violaceusniger Tu 4113]
gi|344034829|gb|AEM80554.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces
violaceusniger Tu 4113]
Length=554
Score = 546 bits (1408), Expect = 3e-153, Method: Compositional matrix adjust.
Identities = 313/552 (57%), Positives = 382/552 (70%), Gaps = 31/552 (5%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+ +VP GAV+ +P +R AKW + S+LTLA++ VV F P +Q
Sbjct 2 SFPLLTATAVVPALGAVVTAAVPAAQRAAAKWVALGFSLLTLALAAVVLVRFDPGGAHFQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E H+WI FG Y LGVDGIAV L+ LT VLIP +++AGW+DA P G P
Sbjct 62 LTESHAWIKDFGVRYELGVDGIAVALIALTAVLIPFIILAGWHDA------DPLEGARPN 115
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
R R + AL L +E+MV++S A DV LFY+FFEAMLIPMYFLIG
Sbjct 116 ------------SRWRPTQGFFALILMVEAMVVISFEATDVFLFYIFFEAMLIPMYFLIG 163
Query 183 GFGQGAG----------RSRAAVKFLLYNLFGGLIMLAAVIGLYVVTA-QYDSGTFDFRE 231
GFG AG RS AAVKFLLYNL GGLIMLAAV+GLY VTA Q +GTF +E
Sbjct 164 GFGDRAGGRSEEETATQRSYAAVKFLLYNLAGGLIMLAAVVGLYAVTADQLGTGTFSLQE 223
Query 232 IVAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVM 291
IV A G + + LFLGF FAFA+KAPLWP H WLP+A E+T AVL+ AV+
Sbjct 224 IVQARAGGHLDMASSTERLLFLGFFFAFAVKAPLWPLHTWLPNAMGEATTPVAVLITAVV 283
Query 292 DKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHF 351
DKVGTF MLR+CLQLFP+ S + P I+ LA+I +IYGA++AIGQ D+ RLIAY SISHF
Sbjct 284 DKVGTFAMLRFCLQLFPEASKWATPAIMILALISIIYGALLAIGQRDIKRLIAYASISHF 343
Query 352 GFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPI 411
GFII GIF MTTQGQ G+TLYM+NHG+STAA+ L+AGFLI RRGSR I DYGGVQKVAP+
Sbjct 344 GFIILGIFAMTTQGQGGATLYMVNHGVSTAALMLVAGFLITRRGSRLIEDYGGVQKVAPV 403
Query 412 LAGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRV 471
LAGTF++ +AT+SLPGLAPFISEFLVL+GTFSRY + +VL+A+Y+L LYQR
Sbjct 404 LAGTFLIGGLATLSLPGLAPFISEFLVLVGTFSRYPVFGVIATVGIVLAALYVLILYQRT 463
Query 472 MTGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDP 531
MTGPV + DL RE++VVAPLIALL+ LGVYPKP+ DI+NPAV++TM+ + + DP
Sbjct 464 MTGPVKAEVRSMPDLRVRELVVVAPLIALLIFLGVYPKPLADIVNPAVDHTMSVVDKKDP 523
Query 532 APSVAHPVPAVG 543
P HPV G
Sbjct 524 RPD--HPVTDAG 533
>gi|271962167|ref|YP_003336363.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
gi|270505342|gb|ACZ83620.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
Length=509
Score = 545 bits (1405), Expect = 6e-153, Method: Compositional matrix adjust.
Identities = 293/535 (55%), Positives = 384/535 (72%), Gaps = 33/535 (6%)
Query 4 VPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPS-AEPYQ 62
+PWLS+L VP+ GAV + L +LAK + VS++ LA++ V+AA+F PS A +Q
Sbjct 1 MPWLSILMAVPVLGAVGVSLTK--SDKLAKQLALAVSLVVLALTGVMAAQFNPSSATRFQ 58
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
F E + WIP FG Y +GVDGIA+VL+ L+ VL+P++++A W+DA D A
Sbjct 59 FAEVYDWIPRFGVHYGVGVDGIALVLIALSAVLVPIVILASWHDA---DGTGAA------ 109
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
APP+ R V Y AL L +E+M++ A DV LFYVFFEAMLIPMYF+IG
Sbjct 110 --APPK---------RSVKTYFALLLVLEAMMIGVFAATDVFLFYVFFEAMLIPMYFMIG 158
Query 183 GFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYG 242
+G GA RS AAVKFLLY+LFGGL+ML AVI LYV+ D GTF F E+V +
Sbjct 159 SYG-GAQRSYAAVKFLLYSLFGGLLMLVAVIALYVIA---DKGTFMFPELVGVIQ----- 209
Query 243 ADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRY 302
DP K LFLGF AFA+KAPLWPFH WLPDAA ++ AVL++ V+DKVGT+GMLR+
Sbjct 210 -DPNTQKWLFLGFFIAFAVKAPLWPFHTWLPDAAAQAPAGAAVLLVGVLDKVGTYGMLRF 268
Query 303 CLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMT 362
CL+LFPD + +F PL++ L+++G++YGAIVAIGQTD+ RLIAYTSISHFGFI G+F MT
Sbjct 269 CLELFPDAAKFFTPLVIVLSVVGIVYGAIVAIGQTDIKRLIAYTSISHFGFIALGVFAMT 328
Query 363 TQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMA 422
G +G+TLYM+NHG ST A+FLIAGFLI RRGS IADYGGVQKVAP+LAGTF+++ ++
Sbjct 329 AHGGAGATLYMVNHGFSTGALFLIAGFLIYRRGSSQIADYGGVQKVAPLLAGTFLIAGLS 388
Query 423 TVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNER 482
+SLPGL+ F+SEF+VL+GT+ RY + A + ++L+A+Y+LW+YQR MTGP AE +
Sbjct 389 GLSLPGLSSFVSEFMVLMGTYERYAVPAIIATSGVILAAIYILWMYQRTMTGPTAESVKG 448
Query 483 IGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPAPSVAH 537
DL RE VVAPLIA+++ LG +PKPVLD+INPAV+ T++ + P+VA
Sbjct 449 FTDLNIRERWVVAPLIAVIIALGFFPKPVLDVINPAVDQTLSNVHVDQFTPAVAD 503
>gi|297192775|ref|ZP_06910173.1| NADH dehydrogenase subunit I M (NuoM) [Streptomyces pristinaespiralis
ATCC 25486]
gi|197721036|gb|EDY64944.1| NADH dehydrogenase subunit I M (NuoM) [Streptomyces pristinaespiralis
ATCC 25486]
Length=523
Score = 543 bits (1399), Expect = 3e-152, Method: Compositional matrix adjust.
Identities = 298/543 (55%), Positives = 377/543 (70%), Gaps = 35/543 (6%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+ ++P GA++ +P RR AKW ++ S+ TL ++ +V F+P + YQ
Sbjct 2 SFPILTATAVLPAVGAIVTAAVPATRRTAAKWVALLFSLATLVMAAIVLVRFEPGGDRYQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E H+WI FG Y LGVDGI VV+V LT +LIP +++AGW+DA D L S R+
Sbjct 62 LTESHAWIADFGVRYELGVDGIGVVMVALTALLIPFVILAGWHDA---DPLENKSSRW-- 116
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
R + AL L +E+MV++S A DV LFY+ FEAMLIPMYFLIG
Sbjct 117 ---------------RPTQGFFALILMVEAMVVLSFEATDVFLFYILFEAMLIPMYFLIG 161
Query 183 GFGQ----------GAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREI 232
GFG A RS AAVKFLLYNL GGLIMLAAVIGLYVV +G+F EI
Sbjct 162 GFGDRAHSGTDENAAAQRSYAAVKFLLYNLAGGLIMLAAVIGLYVV-----AGSFSLSEI 216
Query 233 VAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMD 292
A+G + LFLGF FAFAIKAPLWP H WLP+A E+T AVL+ AV+D
Sbjct 217 AEARASGSLDMATTTERLLFLGFFFAFAIKAPLWPLHTWLPNAMGEATAPVAVLITAVVD 276
Query 293 KVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFG 352
KVGTF MLR+CLQLFP+ S + P+I+ LA++ ++YGA++A+GQ D+ RLIAY S+SHFG
Sbjct 277 KVGTFAMLRFCLQLFPEASKWATPVIIVLALVSIVYGALLAVGQRDIKRLIAYASVSHFG 336
Query 353 FIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPIL 412
FI+ GIF MT+QGQSG+TLYM+NHGLSTAA+ L+AGFLI+RRGSR IADYGGVQKVAP+L
Sbjct 337 FIVLGIFAMTSQGQSGATLYMVNHGLSTAALMLVAGFLISRRGSRLIADYGGVQKVAPVL 396
Query 413 AGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVM 472
AGTF++ +AT+SLPGLAPF+SEFLVL+GTF+ Y +A +VL+A+Y L LYQR M
Sbjct 397 AGTFLIGGLATLSLPGLAPFVSEFLVLVGTFAVYPVAGIIATLGIVLAALYTLVLYQRTM 456
Query 473 TGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPA 532
TGPV + DL RE+ VVAPLIALLL LGV+PKP+ +IINPAVE+TM+ + + DP
Sbjct 457 TGPVRTEVRTMPDLKVRELAVVAPLIALLLFLGVFPKPLTEIINPAVEHTMSDVQKQDPR 516
Query 533 PSV 535
P V
Sbjct 517 PDV 519
>gi|294630808|ref|ZP_06709368.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. e14]
gi|292834141|gb|EFF92490.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. e14]
Length=526
Score = 541 bits (1395), Expect = 9e-152, Method: Compositional matrix adjust.
Identities = 306/543 (57%), Positives = 371/543 (69%), Gaps = 35/543 (6%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+ ++P GAV +P RR AKW ++VS+ TLA++I V F P YQ
Sbjct 5 SFPLLTATAVLPAIGAVATAAVPAARRTAAKWLALLVSLATLALAITVLVRFDPDGARYQ 64
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E HSWI AFG Y LGVDGI V LV LT +L+P +++AGWNDA +
Sbjct 65 LTESHSWIAAFGVRYELGVDGIGVALVALTALLMPFVILAGWNDAEPLE----------- 113
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
+G R R + AL LA+E+MV++S A DV LFY+FFEAMLIPMYFLIG
Sbjct 114 ---------TGSRRWRPTQGFFALILAVEAMVIISFEATDVFLFYIFFEAMLIPMYFLIG 164
Query 183 GFGQGA----------GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREI 232
GFG A RS AAVKFLLYNL GGLIMLAAVIGLY VT G F EI
Sbjct 165 GFGDRAHEHGEETAATQRSYAAVKFLLYNLAGGLIMLAAVIGLYTVT-----GNFSLAEI 219
Query 233 VAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMD 292
A G + LFLGF FAFA+KAPLWP H WLP+A EST AVL+ AV+D
Sbjct 220 AQARANGSLHMATGTERWLFLGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAVVD 279
Query 293 KVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFG 352
KVGTF MLR+CLQLFP+ S + P+I+ LA+I +IYGA++A+GQ D+ RLIAY SISHFG
Sbjct 280 KVGTFAMLRFCLQLFPEASKWATPVILVLALISIIYGALLAVGQRDIKRLIAYASISHFG 339
Query 353 FIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPIL 412
FII GIF MT+QGQSG+TLYM+NHG+STAA+ L+AGFLI+RRGSR IADYGGVQKVAP+L
Sbjct 340 FIIMGIFAMTSQGQSGATLYMVNHGISTAALLLVAGFLISRRGSRLIADYGGVQKVAPVL 399
Query 413 AGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVM 472
AGTF++ +AT+SLPGLAPF+SEFLVL+GTF+R+ +VL+A+Y L LYQR M
Sbjct 400 AGTFLIGGLATLSLPGLAPFVSEFLVLVGTFTRHPAIGIIATFGIVLAALYTLVLYQRTM 459
Query 473 TGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPA 532
TG V + DL RE++VVAPLI LLL LGVYPKPV DI+NPAV+ TM+ + Q DP
Sbjct 460 TGQVKPEVSAMPDLKVRELVVVAPLIVLLLFLGVYPKPVTDIVNPAVKQTMSDVHQTDPK 519
Query 533 PSV 535
P V
Sbjct 520 PEV 522
>gi|302543432|ref|ZP_07295774.1| NADH-quinone oxidoreductase, M subunit [Streptomyces hygroscopicus
ATCC 53653]
gi|302461050|gb|EFL24143.1| NADH-quinone oxidoreductase, M subunit [Streptomyces himastatinicus
ATCC 53653]
Length=554
Score = 540 bits (1391), Expect = 3e-151, Method: Compositional matrix adjust.
Identities = 298/515 (58%), Positives = 367/515 (72%), Gaps = 31/515 (6%)
Query 40 SVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLL 99
S++TLA++ V+ F P +Q E H+WI FG Y LGVDGIAV L+ LT VLIP +
Sbjct 39 SLVTLALAAVILVRFDPDGGRFQLTESHAWIKDFGVRYELGVDGIAVALIALTAVLIPFI 98
Query 100 LVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVI 159
++AGW+DA P G P R R R + AL L +E+MV++S
Sbjct 99 ILAGWHDA------DPLEGARPNR------------RWRPTQGFFALILLVEAMVVISFE 140
Query 160 ALDVLLFYVFFEAMLIPMYFLIGGFGQGAG----------RSRAAVKFLLYNLFGGLIML 209
A DV +FY+FFEAMLIPMYFLIGGFG AG RS AAVKFLLYNL GGLIML
Sbjct 141 ATDVFVFYIFFEAMLIPMYFLIGGFGDRAGERSEEETATQRSYAAVKFLLYNLAGGLIML 200
Query 210 AAVIGLYVVTAQ-YDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPF 268
AAV+GLY VTA +GTF ++IV A+G+ + + LFLGF FAFA+KAPLWP
Sbjct 201 AAVVGLYAVTADDLGTGTFSLQQIVDARASGQLDMAASTERLLFLGFFFAFAVKAPLWPL 260
Query 269 HRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIY 328
H WLP+A EST AVL+ AV+DKVGTF MLR+CLQLFP+ S + P+I+ LA+I +IY
Sbjct 261 HTWLPNAMGESTSPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWATPVILVLALISIIY 320
Query 329 GAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAG 388
GA++AIGQ D+ RLIAY SISHFGFII GIF MTTQGQ G+TLYM+NHG+STAA+ L+AG
Sbjct 321 GALLAIGQRDIKRLIAYASISHFGFIILGIFAMTTQGQGGATLYMVNHGISTAALMLVAG 380
Query 389 FLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWL 448
FLI RRGSR IADYGGVQKVAP+LAGTF++ +AT+SLPGLAPFISEFLVL+G F+RY +
Sbjct 381 FLITRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFISEFLVLVGAFARYPV 440
Query 449 AAAFGVTALVLSAVYMLWLYQRVMTGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYP 508
A +VL+A+Y+L LYQR MTGPV E + DL RE++VVAPLIALLL LGVYP
Sbjct 441 AGVIATLGIVLAALYVLILYQRTMTGPVKEEVRSMPDLRPRELLVVAPLIALLLFLGVYP 500
Query 509 KPVLDIINPAVENTMTTIGQHDPAPSVAHPVPAVG 543
KP+ I+NPAV++T++ + + DP P HPV G
Sbjct 501 KPLTAIVNPAVDHTLSVVDEKDPKPD--HPVTDAG 533
>gi|21222957|ref|NP_628736.1| NADH dehydrogenase subunit M [Streptomyces coelicolor A3(2)]
gi|289769822|ref|ZP_06529200.1| NuoM [Streptomyces lividans TK24]
gi|5042265|emb|CAB44519.1| NuoM, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
gi|289700021|gb|EFD67450.1| NuoM [Streptomyces lividans TK24]
Length=523
Score = 538 bits (1386), Expect = 1e-150, Method: Compositional matrix adjust.
Identities = 303/543 (56%), Positives = 376/543 (70%), Gaps = 35/543 (6%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+V +P GA+ +P +R AKW ++VS+ TL ++I V F P + YQ
Sbjct 2 SFPLLTVTAALPAVGAIATAAVPAAKRTAAKWLALLVSLATLGLAIAVLVRFDPDGDRYQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E HSWI FG Y LGVDGIAV L+ LT +LIP +++AGW+DA D L S R+
Sbjct 62 LTESHSWIADFGVRYELGVDGIAVALIALTALLIPFIILAGWHDA---DPLETGSSRW-- 116
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
R + AL LA+E+MV++S A DV LFY+FFEAMLIP+YFLIG
Sbjct 117 ---------------RPTQGFFALILAVEAMVIISFEATDVFLFYIFFEAMLIPLYFLIG 161
Query 183 GFGQGA----------GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREI 232
GFG A RS AAVKFLLYNL GGLIMLAAVIGLYVV +G F EI
Sbjct 162 GFGDRAHEHGEKTAATQRSYAAVKFLLYNLAGGLIMLAAVIGLYVV-----AGNFSLTEI 216
Query 233 VAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMD 292
A G + + LFLGF FAFA+KAPL+P H WLP+A EST AVL+ AV+D
Sbjct 217 AEARANGSLDMATSTERWLFLGFFFAFAVKAPLFPLHTWLPNAMGESTAPVAVLITAVVD 276
Query 293 KVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFG 352
KVGTF MLR+CLQLFP+ S + P+I+ LA+I +IYGA++A+GQ D+ RLIAY SISHFG
Sbjct 277 KVGTFAMLRFCLQLFPEASKWATPVILVLAVISIIYGALLAVGQRDIKRLIAYASISHFG 336
Query 353 FIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPIL 412
FII GIF MT+QGQSG+TLYM+NHG+STA + LIAGFLI+RRGSR IAD+GGVQKVAPIL
Sbjct 337 FIIMGIFAMTSQGQSGATLYMVNHGISTAVLMLIAGFLISRRGSRLIADFGGVQKVAPIL 396
Query 413 AGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVM 472
AGTF++ +AT+SLPGLAPF+SEFLVL+GTF+RY + +VL+A+Y L LYQR M
Sbjct 397 AGTFLIGGLATLSLPGLAPFVSEFLVLVGTFTRYPVIGIIATLGIVLAALYTLVLYQRTM 456
Query 473 TGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTMTTIGQHDPA 532
TGPV + DL RE++VVAPL+ALL+ LGV+PKPV DI+NPAVE TM+ + + DP
Sbjct 457 TGPVKAEVNGMPDLRVRELVVVAPLVALLIFLGVFPKPVTDIVNPAVEQTMSDVHKTDPQ 516
Query 533 PSV 535
P V
Sbjct 517 PEV 519
>gi|29831392|ref|NP_826026.1| NADH dehydrogenase subunit M [Streptomyces avermitilis MA-4680]
gi|29608507|dbj|BAC72561.1| putative NADH dehydrogenase I chain M (complex I) [Streptomyces
avermitilis MA-4680]
Length=532
Score = 537 bits (1383), Expect = 2e-150, Method: Compositional matrix adjust.
Identities = 303/552 (55%), Positives = 374/552 (68%), Gaps = 44/552 (7%)
Query 3 NVPWLSVLWLVPLAGAVLIILLPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQ 62
+ P L+ ++P GA+ +P RR AKW + VS+ TL ++ VV F+P YQ
Sbjct 2 SFPLLTATAVLPALGALATAAVPAARRTAAKWLALAVSLATLVLAAVVLVRFEPGGARYQ 61
Query 63 FVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQ 122
E H WI FG Y LGVDGI V LV LT +LIP +++AGW+DA
Sbjct 62 LTESHPWIKDFGVRYELGVDGIGVALVALTALLIPFIILAGWHDAD-------------- 107
Query 123 RPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIG 182
P RSS R R + AL LA+E+MV++S A DV LFY+FFEAMLIPMYFLIG
Sbjct 108 ---PLETRSS---RWRPTQGFFALILAVEAMVILSFEATDVFLFYIFFEAMLIPMYFLIG 161
Query 183 GFGQGA-------------------GRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYD 223
GFG A RS AAVKFLLYNL GGLIMLAAVIGLYVV
Sbjct 162 GFGDRAHGAYQSAVTAAQRDEAAATQRSYAAVKFLLYNLVGGLIMLAAVIGLYVV----- 216
Query 224 SGTFDFREIVAGVAAGRYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPAT 283
+G F +EIV A G + + LFLGF FAFA+KAPLWP H WLP+A EST
Sbjct 217 AGNFSLQEIVQARANGSLHMATSTERWLFLGFFFAFAVKAPLWPLHTWLPNAMGESTAPV 276
Query 284 AVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLI 343
AVL+ AV+DKVGTF MLR+CL LFP+ S + P+I+ LA+I ++YGA++A+GQ D+ RL+
Sbjct 277 AVLITAVVDKVGTFAMLRFCLGLFPEASKWATPVILVLALISIVYGALLAVGQRDIKRLV 336
Query 344 AYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYG 403
AY SISHFGFI+ GIF MT+QGQSG+TLYM+NHG+STAA+ L+AGFLI+RRGSR IADYG
Sbjct 337 AYASISHFGFIVLGIFAMTSQGQSGATLYMVNHGISTAALMLVAGFLISRRGSRLIADYG 396
Query 404 GVQKVAPILAGTFMVSAMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVY 463
GVQKVAP+LAGTF++ +AT+SLPGLAPF+SEFLVL+GTF+RY +VL+A+Y
Sbjct 397 GVQKVAPVLAGTFLIGGLATLSLPGLAPFVSEFLVLVGTFTRYPAVGIIATFGIVLAALY 456
Query 464 MLWLYQRVMTGPVAEGNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDIINPAVENTM 523
L LYQR MTGPV + DL RE++VVAPLIALL+ LGVYPKPV DI+NPAV+ TM
Sbjct 457 TLVLYQRTMTGPVKAEVAEMPDLRARELLVVAPLIALLIFLGVYPKPVTDIVNPAVQQTM 516
Query 524 TTIGQHDPAPSV 535
+ + + DP P V
Sbjct 517 SDVHEKDPKPEV 528
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1228723937424
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40