BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3160c Length=213 Score E Sequences producing significant alignments: (Bits) Value gi|15842737|ref|NP_337774.1| TetR family transcriptional regulat... 419 1e-115 gi|167970173|ref|ZP_02552450.1| transcriptional regulator, TetR ... 418 3e-115 gi|15610296|ref|NP_217676.1| TetR family transcriptional regulat... 418 3e-115 gi|340628137|ref|YP_004746589.1| putative transcriptional regula... 417 6e-115 gi|240168071|ref|ZP_04746730.1| TetR family transcriptional regu... 251 4e-65 gi|54024192|ref|YP_118434.1| putative transcriptional regulator ... 77.4 1e-12 gi|333991305|ref|YP_004523919.1| transcription regulator AmtR [M... 76.3 3e-12 gi|169631167|ref|YP_001704816.1| TetR family transcriptional reg... 73.6 2e-11 gi|118470544|ref|YP_888577.1| transcription regulator AmtR [Myco... 73.2 2e-11 gi|118472773|ref|YP_885989.1| TetR family transcriptional regula... 72.0 5e-11 gi|262203753|ref|YP_003274961.1| TetR family transcriptional reg... 72.0 5e-11 gi|226366296|ref|YP_002784079.1| TetR family transcriptional reg... 71.6 8e-11 gi|111023870|ref|YP_706842.1| MalT family transcriptional regula... 71.2 8e-11 gi|312139511|ref|YP_004006847.1| tetr family transcriptional reg... 69.3 3e-10 gi|317505887|ref|ZP_07963727.1| tetR family bacterial regulatory... 68.9 5e-10 gi|325672599|ref|ZP_08152295.1| TetR family transcriptional regu... 68.6 5e-10 gi|229493562|ref|ZP_04387347.1| transcriptional regulator, MalT ... 67.4 1e-09 gi|226306438|ref|YP_002766398.1| TetR family transcriptional reg... 66.2 3e-09 gi|119964272|ref|YP_946013.1| TetR family transcriptional regula... 65.1 6e-09 gi|326329894|ref|ZP_08196209.1| transcriptional regulator, TetR ... 65.1 6e-09 gi|146275919|ref|YP_001166079.1| TetR family transcriptional reg... 65.1 6e-09 gi|302342059|ref|YP_003806588.1| TetR family transcriptional reg... 64.3 1e-08 gi|343926067|ref|ZP_08765579.1| putative TetR family transcripti... 63.9 1e-08 gi|163760735|ref|ZP_02167815.1| transcriptional regulator, TetR ... 63.9 1e-08 gi|194016628|ref|ZP_03055242.1| TetR family transcriptional regu... 63.9 1e-08 gi|333918744|ref|YP_004492325.1| transcription regulator AmtR [A... 63.9 2e-08 gi|227820121|ref|YP_002824092.1| TetR family transcriptional reg... 63.5 2e-08 gi|29833243|ref|NP_827877.1| TetR family transcriptional regulat... 63.2 3e-08 gi|257791035|ref|YP_003181641.1| TetR family transcriptional reg... 61.6 7e-08 gi|325830706|ref|ZP_08164090.1| transcriptional regulator, TetR ... 61.6 8e-08 gi|311900046|dbj|BAJ32454.1| putative TetR family transcriptiona... 61.6 8e-08 gi|108798810|ref|YP_639007.1| TetR family transcriptional regula... 61.2 1e-07 gi|296139307|ref|YP_003646550.1| TetR family transcriptional reg... 60.5 1e-07 gi|118468120|ref|YP_885944.1| TetR family transcriptional regula... 60.1 2e-07 gi|229494137|ref|ZP_04387900.1| transcriptional regulator, TetR ... 60.1 2e-07 gi|84501810|ref|ZP_00999968.1| transcriptional regulator, TetR f... 60.1 2e-07 gi|288922880|ref|ZP_06417043.1| transcriptional regulator, TetR ... 60.1 2e-07 gi|271968981|ref|YP_003343177.1| TetR family transcriptional reg... 60.1 2e-07 gi|295695869|ref|YP_003589107.1| TetR family transcriptional reg... 60.1 2e-07 gi|163854670|ref|YP_001628968.1| TetR family transcriptional reg... 59.3 3e-07 gi|300784545|ref|YP_003764836.1| TetR family transcriptional reg... 59.3 4e-07 gi|145225177|ref|YP_001135855.1| TetR family transcriptional reg... 59.3 4e-07 gi|300767812|ref|ZP_07077722.1| transcription regulator [Lactoba... 59.3 4e-07 gi|154247994|ref|YP_001418952.1| TetR family transcriptional reg... 58.5 5e-07 gi|229017860|ref|ZP_04174743.1| Transcriptional regulator, TetR ... 58.5 5e-07 gi|229076815|ref|ZP_04209725.1| Transcriptional regulator, TetR ... 58.5 6e-07 gi|300781697|ref|ZP_07091551.1| transcription regulator AmtR [Co... 58.5 6e-07 gi|209526291|ref|ZP_03274820.1| transcriptional regulator, TetR ... 58.5 6e-07 gi|311895237|dbj|BAJ27645.1| putative TetR family transcriptiona... 58.5 7e-07 gi|119492809|ref|ZP_01623895.1| Transcriptional Regulator, TetR ... 58.5 7e-07 >gi|15842737|ref|NP_337774.1| TetR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13883060|gb|AAK47588.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] Length=225 Score = 419 bits (1077), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA Sbjct 13 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 72 Query 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 120 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV Sbjct 73 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 132 Query 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 180 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF Sbjct 133 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 192 Query 181 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 213 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL Sbjct 193 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 225 >gi|167970173|ref|ZP_02552450.1| transcriptional regulator, TetR family protein [Mycobacterium tuberculosis H37Ra] gi|254365785|ref|ZP_04981830.1| hypothetical transcriptional regulatory protein (probably tetR-family) [Mycobacterium tuberculosis str. Haarlem] gi|254552250|ref|ZP_05142697.1| TetR family transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289746973|ref|ZP_06506351.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|134151298|gb|EBA43343.1| hypothetical transcriptional regulatory protein (probably tetR-family) [Mycobacterium tuberculosis str. Haarlem] gi|289687501|gb|EFD54989.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length=220 Score = 418 bits (1074), Expect = 3e-115, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA Sbjct 8 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 67 Query 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 120 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV Sbjct 68 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 127 Query 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 180 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF Sbjct 128 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 187 Query 181 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 213 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL Sbjct 188 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 220 >gi|15610296|ref|NP_217676.1| TetR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|31794337|ref|NP_856830.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121639044|ref|YP_979268.1| TetR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] 68 more sequence titles Length=213 Score = 418 bits (1074), Expect = 3e-115, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA Sbjct 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 Query 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 120 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV Sbjct 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 120 Query 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 180 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF Sbjct 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 180 Query 181 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 213 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL Sbjct 181 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 213 >gi|340628137|ref|YP_004746589.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340006327|emb|CCC45506.1| putative transcriptional regulatory protein (probably TETR-family) [Mycobacterium canettii CIPT 140010059] Length=213 Score = 417 bits (1072), Expect = 6e-115, Method: Compositional matrix adjust. Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 MPRQAGRWSPTALRILGAAAELIA+RGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA Sbjct 1 MPRQAGRWSPTALRILGAAAELIAVRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 Query 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 120 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV Sbjct 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFV 120 Query 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 180 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF Sbjct 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVEF 180 Query 181 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 213 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL Sbjct 181 AMTALLSDPDRLAEIRAAADALEIQTAPPDRGL 213 >gi|240168071|ref|ZP_04746730.1| TetR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=214 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 130/207 (63%), Positives = 167/207 (81%), Gaps = 1/207 (0%) Query 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 M +A R SPTA RIL AAAELI+LRGYS+TSTR+IAAAVGVEQPA+YKHFS+K+DILAA Sbjct 1 MSGEAARRSPTADRILRAAAELISLRGYSATSTREIAAAVGVEQPALYKHFSSKKDILAA 60 Query 61 LVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQ-ESF 119 LVRLA+E PL + + A+ PAVVKLHRWL E+ ++++ SP VL +++ITP+L Q ++F Sbjct 61 LVRLALERPLAVADELAAVRAPAVVKLHRWLQEAYEYVNRSPNVLAALIITPELQQDDAF 120 Query 120 VAERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDEIVE 179 AE+ LV+++E +V LI GQ EGDVR ++P+SAARL++A+FDA+ P+ AV P EIVE Sbjct 121 AAEQALVSKIEPVIVDLIRAGQDEGDVRELNPVSAARLIEAMFDAVTFPDLAVDPVEIVE 180 Query 180 FAMTALLSDPDRLAEIRAAADALEIQT 206 F + ALLSDP RL EIR+AADALEI T Sbjct 181 FTLVALLSDPARLPEIRSAADALEIST 207 >gi|54024192|ref|YP_118434.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54015700|dbj|BAD57070.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=227 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/122 (41%), Positives = 70/122 (58%), Gaps = 1/122 (0%) Query 2 PRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAAL 61 PR+ +P A IL AAAEL +GY+STSTR +A AVG+ Q ++Y HF+AK DIL AL Sbjct 19 PRRRQGRTPRA-EILDAAAELFTTQGYASTSTRAVADAVGIRQASLYHHFAAKDDILEAL 77 Query 62 VRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVA 121 + V PL L + A PV V+L+ + L ++ + L ++ + P+L F A Sbjct 78 LAETVSGPLALAERLRAEPVAPAVRLYALARFDVRQLCSARWNLGALYLLPELRSARFAA 137 Query 122 ER 123 R Sbjct 138 FR 139 >gi|333991305|ref|YP_004523919.1| transcription regulator AmtR [Mycobacterium sp. JDM601] gi|333487273|gb|AEF36665.1| transcription regulator AmtR [Mycobacterium sp. JDM601] Length=219 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/115 (41%), Positives = 63/115 (55%), Gaps = 0/115 (0%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAAEL GYS TSTR IA AVG+ Q ++Y HF+AK DIL AL+ V+ L+L Sbjct 25 ILDAAAELFTTIGYSGTSTRRIAEAVGMRQASLYHHFAAKEDILDALLAGTVDASLQLAA 84 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEM 129 + A PA +LH + L + + L S+ + P+L E F R E+ Sbjct 85 ELRAEDGPAAPRLHTLVVADTAQLCSGAWNLGSLYLLPELRVERFAVFRRRRDEL 139 >gi|169631167|ref|YP_001704816.1| TetR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243134|emb|CAM64162.1| Putative transcriptional regulator, TetR family [Mycobacterium abscessus] Length=219 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/110 (39%), Positives = 62/110 (57%), Gaps = 0/110 (0%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL A+AEL G+++T+TR IA +VG++Q ++Y HF K DIL AL+ + ++ PL Sbjct 21 ILDASAELFTTDGFAATTTRRIAESVGIQQASLYYHFKTKDDILDALLAMTIDQPLHYAA 80 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERE 124 I P VV+L+ L AS + L ++ + PDL E F A R Sbjct 81 LIADRPEAPVVRLYALALGDAAQLAASRWNLGALYLLPDLRAERFSAFRR 130 >gi|118470544|ref|YP_888577.1| transcription regulator AmtR [Mycobacterium smegmatis str. MC2 155] gi|118171831|gb|ABK72727.1| transcription regulator AmtR [Mycobacterium smegmatis str. MC2 155] Length=225 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/207 (36%), Positives = 99/207 (48%), Gaps = 20/207 (9%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAAEL GY STSTR IA VGV Q ++Y HF+ K DIL AL+ V+ PLEL Sbjct 26 ILDAAAELFTTHGYGSTSTRRIADEVGVRQASLYHHFATKDDILDALLAGTVDEPLELAH 85 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEMERALV 134 + PA +LH + L A + L ++ + P+L + F R AE+ A Sbjct 86 GLLGESGPAAPRLHALVIYDASQLCAGRWNLGALYLLPELRTDRFAPFRRRRAELRSAYR 145 Query 135 GLIET------GQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDE----IVEFAMTA 184 L G E D RLV+++ ++ + + AV P E I E A+ Sbjct 146 SLAAAVIAECGGPPEADDLPF------RLVESVINSRS--DDAVVPPEQPWVIGEGALRV 197 Query 185 LLSDPDRLAEIRAAADALEIQTAPPDR 211 L D D AE+ AAA A + PP R Sbjct 198 LGFDGD-FAEL-AAATASRLGVRPPGR 222 >gi|118472773|ref|YP_885989.1| TetR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174060|gb|ABK74956.1| transcriptional regulator, TetR family protein, putative [Mycobacterium smegmatis str. MC2 155] Length=225 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/211 (31%), Positives = 95/211 (46%), Gaps = 11/211 (5%) Query 8 WSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVE 67 W+ T RIL AA++L A RGY TSTRDIA AV + QP+++ HF+AK++I LV L + Sbjct 14 WASTRGRILLAASQLFAARGYFGTSTRDIADAVSIRQPSLFHHFTAKQEIFRTLVELDLG 73 Query 68 WPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVA 127 ++ A KLH + + + A P+ + L F ER + Sbjct 74 PSIDRVRQRLAEESTWAEKLHLTVACDVREILAQPFDARGLYQDAVLAMPEFDEERRGID 133 Query 128 EMERALVGLIETGQGEG---DVRAMHPLSAARLVQALFDAL------ALPEFAVSPDEIV 178 + LI +G G D A L AA V +F+ L A P + Sbjct 134 LFHDLVETLIRSGTDAGEFVDFEASFVLRAANGV--MFETLREQGGPAGRMRVQRPLQAA 191 Query 179 EFAMTALLSDPDRLAEIRAAADALEIQTAPP 209 +F + A++ DP L IRA + ++ P Sbjct 192 DFVLRAVMVDPTDLPRIRAVTENRLVKGVLP 222 >gi|262203753|ref|YP_003274961.1| TetR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262087100|gb|ACY23068.1| regulatory protein TetR [Gordonia bronchialis DSM 43247] Length=214 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/149 (37%), Positives = 75/149 (51%), Gaps = 4/149 (2%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAAEL GY+ TSTR IA AVG+ Q ++Y +FS K DILA L+ V PLE Sbjct 32 ILDAAAELFTSHGYTGTSTRMIADAVGIRQASMYHYFSTKDDILATLLETTVISPLERAR 91 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEMERALV 134 H+ PA+ +L + L AS + L ++ + P+L + F R E+ A Sbjct 92 HLLTEDGPALERLLDLARFDVTQLAASRWNLGALYLLPELRNDRFSEFRTARTELADAYT 151 Query 135 GLIETGQGE-GDVRAMHPLSAARLVQALF 162 L G D R + P RLV+++ Sbjct 152 QLATEVLGTASDRRNLLPF---RLVESVI 177 >gi|226366296|ref|YP_002784079.1| TetR family transcriptional regulator [Rhodococcus opacus B4] gi|226244786|dbj|BAH55134.1| putative TetR family transcriptional regulator [Rhodococcus opacus B4] Length=235 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/149 (35%), Positives = 74/149 (50%), Gaps = 7/149 (4%) Query 3 RQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALV 62 R+ GR +P IL AA EL +G+++TSTR IA VG+ Q ++Y HF K +ILAAL+ Sbjct 14 RRPGRTTPE--EILDAAGELFTTKGFAATSTRQIADMVGIRQASLYHHFPNKEEILAALL 71 Query 63 RLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDL---HQESF 119 V L ++ PA V+LH T + L + + L ++ + P+L E F Sbjct 72 EETVSPALAAAERLSDADAPATVRLHALATYDVTQLTTTRWNLGALYLLPELLADRFEPF 131 Query 120 VAERELVAEMERALV--GLIETGQGEGDV 146 +R L+ R L L E GD Sbjct 132 RTQRTLLRGHYRLLADGALTEMSDASGDT 160 >gi|111023870|ref|YP_706842.1| MalT family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823400|gb|ABG98684.1| transcriptional regulator, MalT family protein [Rhodococcus jostii RHA1] Length=235 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/149 (36%), Positives = 76/149 (52%), Gaps = 7/149 (4%) Query 3 RQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALV 62 R+ G+ +P IL AA EL +G+++TSTR IA VG+ Q ++Y HF K +ILAAL+ Sbjct 14 RRPGQTTPE--EILDAAGELFTTKGFAATSTRQIAEMVGIRQASLYHHFPNKEEILAALL 71 Query 63 RLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDL---HQESF 119 V L G + PA V+LH T + L A+ + L ++ + P+L E F Sbjct 72 EETVSPALAAAGRLADAAAPATVRLHALATYDVTQLTATKWNLGALYLLPELLTDRFEPF 131 Query 120 VAERELVAEMERALV--GLIETGQGEGDV 146 A+R L+ R L L E GD Sbjct 132 RAQRTLLRRHYRQLADQALTEITDDSGDT 160 >gi|312139511|ref|YP_004006847.1| tetr family transcriptional regulator [Rhodococcus equi 103S] gi|311888850|emb|CBH48162.1| putative TetR family transcriptional regulator [Rhodococcus equi 103S] Length=235 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/131 (37%), Positives = 66/131 (51%), Gaps = 3/131 (2%) Query 2 PRQAGRWSPTAL---RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDIL 58 PR R P A IL AAAEL RG++ TSTR IA AVG+ Q ++Y HF+ K DIL Sbjct 9 PRLKTRTRPGATAREEILDAAAELFTTRGFTGTSTRMIADAVGIRQASMYHHFATKDDIL 68 Query 59 AALVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQES 118 AAL+ V PL + VV+L+ L S + L ++ + P++ + Sbjct 69 AALLLDTVAGPLACAEMLRQNCPDPVVRLYALTLFDTAQLAESRWNLGALYLLPEVTTDR 128 Query 119 FVAERELVAEM 129 F R L E+ Sbjct 129 FTEFRSLRGEL 139 >gi|317505887|ref|ZP_07963727.1| tetR family bacterial regulatory protein [Segniliparus rugosus ATCC BAA-974] gi|316255810|gb|EFV15040.1| tetR family bacterial regulatory protein [Segniliparus rugosus ATCC BAA-974] Length=251 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/204 (34%), Positives = 95/204 (47%), Gaps = 17/204 (8%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAAEL GY+S STR IA + G Q ++Y +F +K DIL AL+ V+ L L Sbjct 54 ILDAAAELFTTEGYASVSTRKIAESAGFRQASLYHYFGSKEDILTALLGQTVDVALALAE 113 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEMERALV 134 + A V+L+ + L S + L ++ + P++ E FVA E AL Sbjct 114 RLKDGRESAAVRLYALALSDSEQLITSRWNLGALYLLPEVRAERFVA----FQEKRTALR 169 Query 135 GLIETGQGEGDVRAMH--PLSAARLVQALFDALAL--PEFAVSPD-----EIVEFAMTAL 185 G E Q V A H P RL L +++ + EFA +P E++ A + Sbjct 170 GCYE--QLASAVAAEHGAPTGMRRLPFRLVESVIIERAEFAGAPGSGASPELIAEAALRM 227 Query 186 LSDPDRLAEIRAAADALEIQTAPP 209 L D L IR AL + APP Sbjct 228 LGCADGLEAIR--GQALALLDAPP 249 >gi|325672599|ref|ZP_08152295.1| TetR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325556476|gb|EGD26142.1| TetR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=235 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/131 (37%), Positives = 66/131 (51%), Gaps = 3/131 (2%) Query 2 PRQAGRWSPTAL---RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDIL 58 PR R P A IL AAAEL RG++ TSTR IA AVG+ Q ++Y HF+ K DIL Sbjct 9 PRLKTRTRPGATAREEILDAAAELFTTRGFTGTSTRMIADAVGIRQASMYHHFATKDDIL 68 Query 59 AALVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQES 118 AAL+ V PL + VV+L+ L S + L ++ + P++ + Sbjct 69 AALLLDTVAGPLACAEMLRRNCPDPVVRLYALTLFDTAQLAESRWNLGALYLLPEVTTDR 128 Query 119 FVAERELVAEM 129 F R L E+ Sbjct 129 FAEFRSLRGEL 139 >gi|229493562|ref|ZP_04387347.1| transcriptional regulator, MalT family [Rhodococcus erythropolis SK121] gi|229319523|gb|EEN85359.1| transcriptional regulator, MalT family [Rhodococcus erythropolis SK121] Length=243 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/138 (36%), Positives = 70/138 (51%), Gaps = 6/138 (4%) Query 2 PRQAGRWSPTAL---RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDIL 58 PR R P IL AAAEL RG+++TSTR IA AVG+ Q ++Y HF+ K DIL Sbjct 12 PRLTARRRPGGTARAEILDAAAELFTTRGFAATSTRHIAEAVGMRQASLYNHFATKDDIL 71 Query 59 AALVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQE- 117 AL+ V L+ ++ + VKL+ L + L + + P+L + Sbjct 72 VALLADTVTPALDFAENLRPLDTAPEVKLYALSYIDAAQLITGRWNLGVLYLLPELRSDR 131 Query 118 --SFVAERELVAEMERAL 133 SF A+R+ + E RAL Sbjct 132 FMSFRADRDRLREQYRAL 149 >gi|226306438|ref|YP_002766398.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226185555|dbj|BAH33659.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=240 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/138 (36%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query 2 PRQAGRWSPTAL---RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDIL 58 PR R P IL AAAEL RG+++TSTR IA AVG+ Q ++Y HF+ K DIL Sbjct 9 PRLTARRRPGGTARAEILDAAAELFTTRGFAATSTRHIAEAVGMRQASLYNHFATKDDIL 68 Query 59 AALVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQE- 117 AL+ V L+ ++ VKL+ L + L + + P+L + Sbjct 69 VALLADTVTPALDFAENLRPRGTSPEVKLYALSYIDAAQLITGRWNLGVLYLLPELRSDR 128 Query 118 --SFVAERELVAEMERAL 133 SF A+R+ + E RAL Sbjct 129 FMSFRADRDRLREQYRAL 146 >gi|119964272|ref|YP_946013.1| TetR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951131|gb|ABM10042.1| putative transcriptional regulator, TetR family [Arthrobacter aurescens TC1] Length=232 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/159 (35%), Positives = 80/159 (51%), Gaps = 17/159 (10%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAAEL +G+++TSTR IA AVG+ Q ++Y HFS K +IL L+ V L+ Sbjct 25 ILDAAAELFTGQGFANTSTRAIADAVGIRQSSLYHHFSTKDEILGELLGGTVSTSLDFAR 84 Query 75 HI---TAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESF----VAEREL-- 125 I +A V A +LH + L S + L + P+ E F A +EL Sbjct 85 AIRQHSADAVSAAARLHAVVLFDGSQLCNSRWNLGVLYHLPEARAEIFQPFMAARKELRT 144 Query 126 -VAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFD 163 +E+ R L + + QG GD +A RLV++L + Sbjct 145 IYSELGRELARVSDADQGLGD-------TAFRLVESLIN 176 >gi|326329894|ref|ZP_08196209.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium Broad-1] gi|325952285|gb|EGD44310.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium Broad-1] Length=248 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/103 (39%), Positives = 57/103 (56%), Gaps = 2/103 (1%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF 73 +IL AAAEL RGY+ T+TR+IA G+ Q +IY HF +K +ILA L+ +V+ +E Sbjct 48 QILAAAAELFVGRGYAGTTTREIAEGAGLRQASIYYHFGSKEEILAELLERSVQDRVEQA 107 Query 74 GHITAMPVPAV--VKLHRWLTESLDHLHASPYVLVSILITPDL 114 G I A A V L+ + L A PY + + PD+ Sbjct 108 GKIEAGMASATPDVGLYALAVSDMSALVAMPYNIGMLYRLPDV 150 >gi|146275919|ref|YP_001166079.1| TetR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|145322610|gb|ABP64553.1| transcriptional regulator, TetR family [Novosphingobium aromaticivorans DSM 12444] Length=222 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/85 (42%), Positives = 49/85 (58%), Gaps = 0/85 (0%) Query 11 TALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPL 70 TA RIL A EL A +GY +TS RDIA+ VG++QP +YKHFS K D+ + A++ + Sbjct 22 TANRILDVAEELFARKGYGATSLRDIASQVGLQQPGLYKHFSGKEDLYRQVYERALKPMI 81 Query 71 ELFGHITAMPVPAVVKLHRWLTESL 95 +L I P L +T+ L Sbjct 82 DLMDEILMRPNSDFSDLTDHITDLL 106 >gi|302342059|ref|YP_003806588.1| TetR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638672|gb|ADK83994.1| transcriptional regulator, TetR family [Desulfarculus baarsii DSM 2075] Length=196 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/185 (29%), Positives = 88/185 (48%), Gaps = 17/185 (9%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 I AA EL A +G+ ST ++A GV + I+ HF K IL +L+ + + + G Sbjct 11 IRAAAIELFAAKGFQGASTAEVAKLAGVSEGTIFYHFQTKEGILLSLIDDMFDGYVAVIG 70 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILI--------TPDLHQESFVAERELV 126 A + + +L L H+ + +S+LI D Q + V R + Sbjct 71 QSIAEAATGLEAIECYLRGHLRHVE-ERWNEISLLIRDVPPSFKDDDSPQRAHVLSR--I 127 Query 127 AEMERALVGLIETGQGEGDVRAMHPLSAARL----VQALFDALALPEFAVS--PDEIVEF 180 A++E +V IE GQ +G +R P + AR+ ++ L +AL +F+++ DE+ +F Sbjct 128 AQLEALIVAAIEKGQIDGSIRPCDPAAIARILRGRLKGLTSMMALEKFSITEMSDELCQF 187 Query 181 AMTAL 185 AL Sbjct 188 CRRAL 192 >gi|343926067|ref|ZP_08765579.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343763993|dbj|GAA12505.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=213 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/149 (34%), Positives = 75/149 (51%), Gaps = 4/149 (2%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAAEL GY+ TSTR IA AVG+ Q ++Y HFS K DILA L+ V +E Sbjct 33 ILDAAAELFTRHGYTGTSTRMIAEAVGIRQASMYHHFSTKDDILAHLLETTVVGSVEQAR 92 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEMERALV 134 + PA+ +L ++ L + + L ++ + P++ + FV R E+ A Sbjct 93 TLLDADGPALERLLTLARYDVEQLARARWNLGALYLLPEVGEPRFVEFRSARQELAAAYA 152 Query 135 GLIETGQGE-GDVRAMHPLSAARLVQALF 162 L G+ D R + P RLV+++ Sbjct 153 ALTSAVLGDPADKRCLLPF---RLVESVI 178 >gi|163760735|ref|ZP_02167815.1| transcriptional regulator, TetR family protein [Hoeflea phototrophica DFL-43] gi|162282057|gb|EDQ32348.1| transcriptional regulator, TetR family protein [Hoeflea phototrophica DFL-43] Length=200 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/169 (31%), Positives = 80/169 (48%), Gaps = 6/169 (3%) Query 1 MPRQAGR-WSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILA 59 M R+AG + TA ++ A EL A GY++ S R IAAA GV+ AIY HF K+D+L Sbjct 1 MARRAGSSGAETAEKLRNVALELFAQSGYAAVSMRAIAAATGVQAGAIYNHFPTKQDLLN 60 Query 60 ALVRLAVEWPLELFGHITA---MPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQ 116 L+++ +E L MP A+ + R+ HL S V +S + +L Sbjct 61 ELLQVHMETLLASCAEAEQPGLMPPDALEEFVRFHIRY--HLDRSREVFISYMELRNLEG 118 Query 117 ESFVAERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDAL 165 E+F L + ER ++E G +G + P + A+ + + Sbjct 119 ENFNEIERLRRQYERVPYAILERGAADGSFSIIDPQVTTMAIIAMLNGM 167 >gi|194016628|ref|ZP_03055242.1| TetR family transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012101|gb|EDW21669.1| TetR family transcriptional regulator [Bacillus pumilus ATCC 7061] Length=216 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/157 (27%), Positives = 77/157 (50%), Gaps = 11/157 (7%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AA EL + +GY T+ DI AVG+ + Y +FS+K +++ A++ ++ + + Sbjct 14 ILNAAEELFSTKGYQQTTIIDILKAVGIAKGTFYYYFSSKEEVMDAIIDRIIKADIIVAK 73 Query 75 HITAMP-VPAVVKLHRWLTESLDHLHASPYVLVSILITP---DLHQESFVAERELVAEME 130 I A P +P V KL R + ++ ++ P ++HQ+S + + + E+ Sbjct 74 RIAAEPDLPVVDKLFRIIMAQSPQQGSNKQGMIEQFHQPSNAEMHQKSLI---KAIKELS 130 Query 131 RALVGLIETGQGEGDVRAMHPLSAARLV----QALFD 163 L +I+ G GEG + +P + Q +FD Sbjct 131 PVLADVIQQGVGEGTFKTKYPQETVEFLLASAQVIFD 167 >gi|333918744|ref|YP_004492325.1| transcription regulator AmtR [Amycolicicoccus subflavus DQS3-9A1] gi|333480965|gb|AEF39525.1| Transcription regulator AmtR [Amycolicicoccus subflavus DQS3-9A1] Length=234 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 6/136 (4%) Query 2 PRQAGRWSPTAL---RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDIL 58 PR A R P IL AAAEL GY+STSTR IA AVGV Q IY +F K DIL Sbjct 10 PRSAQRRRPGETAREEILDAAAELFTTHGYASTSTRKIAEAVGVRQATIYHYFGTKDDIL 69 Query 59 AALVRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQES 118 AL+ V L+ + A +LH L S + + ++ + P+L E Sbjct 70 EALLSGTVSHTLDAAFALHATTGDPAARLHSLAWYDGIQLWNSHWNIGALYLLPELRAER 129 Query 119 ---FVAERELVAEMER 131 FVA R+ + ++ R Sbjct 130 FAPFVASRDELRQVYR 145 >gi|227820121|ref|YP_002824092.1| TetR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339120|gb|ACP23339.1| putative transcriptional regulator protein, TetR family [Sinorhizobium fredii NGR234] Length=202 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/189 (32%), Positives = 85/189 (45%), Gaps = 24/189 (12%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF 73 RIL +A L GY+ T+ DIA +G+ IY+ FS+K +I AL +E + Sbjct 19 RILESAERLFRHYGYTKTNVADIARDLGMSPANIYRFFSSKTEIHQALCARMLEASYQQA 78 Query 74 GHITAMPVPA-------VVKLHRWLTES-LDHLHASPYVLVSILITPDLHQESFVAEREL 125 I +P+ A V+ HR E+ LD V+V+I QE V E+ L Sbjct 79 YEIARLPLSAPERLRRYVLAQHRMTVETMLDEQKVHEMVVVAI------EQEWHVIEKHL 132 Query 126 VAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAV---------SPDE 176 ++R L G+I G G+ P AAR A L P+ +PDE Sbjct 133 -DRIDRLLAGIIREGIEAGEFAEQDPEIAARCFGASIVTLCHPQIVAQCLAKENRPTPDE 191 Query 177 IVEFAMTAL 185 ++EFA+ AL Sbjct 192 LIEFAVRAL 200 >gi|29833243|ref|NP_827877.1| TetR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29610365|dbj|BAC74412.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length=207 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/117 (34%), Positives = 63/117 (54%), Gaps = 1/117 (0%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 +L AAAEL RGY++T+TR +A G+ Q ++Y + S K ++LAAL+ V L L Sbjct 27 LLTAAAELFTTRGYAATTTRAVAERAGMRQASMYHYVSGKEELLAALLESTVTPSLALAR 86 Query 75 HITAM-PVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEME 130 H+ A PA +L ++ L P+ L + + P++H E F + AE++ Sbjct 87 HLLAEDAAPAESRLWELCRTDVELLCGGPHNLGGLYLLPEVHTERFAGFHAVRAELK 143 >gi|257791035|ref|YP_003181641.1| TetR family transcriptional regulator [Eggerthella lenta DSM 2243] gi|317488249|ref|ZP_07946816.1| tetR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|257474932|gb|ACV55252.1| transcriptional regulator, TetR family [Eggerthella lenta DSM 2243] gi|316912631|gb|EFV34173.1| tetR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] Length=212 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/109 (34%), Positives = 54/109 (50%), Gaps = 10/109 (9%) Query 7 RWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAV 66 R T RI+ A L A RG+ + S RDIAAAVG++ ++Y HFS K+ I A+VR A+ Sbjct 2 RGKDTKERIVEEAFALFASRGFHAVSVRDIAAAVGIKDASLYNHFSGKQAIFDAIVRDAL 61 Query 67 EWPLELFGHIT--------AMPVPAVV--KLHRWLTESLDHLHASPYVL 105 E FG A P + ++H + S + PY++ Sbjct 62 ERTRRFFGERNILFDVSDDATPYEEMNAERMHEMVLPSFRYFFEDPYMV 110 >gi|325830706|ref|ZP_08164090.1| transcriptional regulator, TetR family [Eggerthella sp. HGA1] gi|325487113|gb|EGC89556.1| transcriptional regulator, TetR family [Eggerthella sp. HGA1] Length=212 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/109 (34%), Positives = 55/109 (51%), Gaps = 10/109 (9%) Query 7 RWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAV 66 R T RI+ A L A RG+ + S RDIAAAVG++ ++Y HFS K+ I A+VR A+ Sbjct 2 RGKDTKERIVEEAFALFASRGFHAVSVRDIAAAVGIKDASLYNHFSGKQAIFDAIVRDAL 61 Query 67 EWPLELFGHIT--------AMPVPAVV--KLHRWLTESLDHLHASPYVL 105 E FG + A P + ++H + S + PY++ Sbjct 62 ERTRRFFGERSILFDVSDDATPYEEMNAERIHEMVLPSFRYFFEDPYMV 110 >gi|311900046|dbj|BAJ32454.1| putative TetR family transcriptional regulator [Kitasatospora setae KM-6054] Length=235 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/125 (35%), Positives = 63/125 (51%), Gaps = 1/125 (0%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 +L AAAEL GY++T+TR +A G+ Q ++Y +F+ K DILA L+ VE L L G Sbjct 31 VLAAAAELFTENGYAATTTRAVAEKAGLRQASMYHYFARKEDILATLLESTVEPSLLLAG 90 Query 75 HITAMP-VPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEMERAL 133 + A P + +L LH Y L ++ P++ E F R AE+ A Sbjct 91 TLLARPGLDPAARLWTLAAADAALLHRGLYNLGALYQLPEVRGERFARFRGARAELRSAY 150 Query 134 VGLIE 138 L+E Sbjct 151 GALLE 155 >gi|108798810|ref|YP_639007.1| TetR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867927|ref|YP_937879.1| TetR family transcriptional regulator [Mycobacterium sp. KMS] gi|126434411|ref|YP_001070102.1| TetR family transcriptional regulator [Mycobacterium sp. JLS] gi|108769229|gb|ABG07951.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS] gi|119694016|gb|ABL91089.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS] gi|126234211|gb|ABN97611.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS] Length=226 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/159 (34%), Positives = 77/159 (49%), Gaps = 8/159 (5%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF- 73 IL AA EL GY+STSTR IA VG+ Q ++Y +F K DIL AL+ V L Sbjct 25 ILDAAGELFTTLGYASTSTRHIAELVGIRQASLYHYFRTKDDILCALLSQTVSPTLGFIP 84 Query 74 GHITAMP-VPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQ---ESFVAERELVAEM 129 + A P + A LH T D L + P+ L ++ + P+L E F ++RE + Sbjct 85 SLLGAQPALTAAEHLHALATFDGDQLLSGPWNLGALYLLPELRDARLEPFWSDRERLRLH 144 Query 130 ERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALP 168 AL + G + A P RLV++L + + P Sbjct 145 YLALSRAVVEQTGVHEAAADLPF---RLVESLVNMWSTP 180 >gi|296139307|ref|YP_003646550.1| TetR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027441|gb|ADG78211.1| transcriptional regulator, TetR family [Tsukamurella paurometabola DSM 20162] Length=231 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/161 (35%), Positives = 82/161 (51%), Gaps = 6/161 (3%) Query 2 PRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAAL 61 PR+ G + A IL AAAEL RGY+ TSTR IA AVG+ Q ++Y HFS K +IL AL Sbjct 22 PRRPG--ATAADEILDAAAELFTSRGYAGTSTRAIAEAVGIRQASLYHHFSTKDEILTAL 79 Query 62 VRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVA 121 + V+ PL L + A + +L + + L + + L ++ P+L ++F Sbjct 80 LEATVQAPLALARQLAAADGEPIDRLVQLAAFDAEQLATARFNLGALYHLPELAGDAFAE 139 Query 122 ERELVAEMERALVGLIETGQGEGDV-RAMHPLSAARLVQAL 161 R AE+ L G+ D R + P RLV+++ Sbjct 140 FRRDRAELAEHYRSLSAAAIGDKDDPRTLLPF---RLVESV 177 >gi|118468120|ref|YP_885944.1| TetR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169407|gb|ABK70303.1| transcriptional regulator, TetR family protein [Mycobacterium smegmatis str. MC2 155] Length=207 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/190 (30%), Positives = 81/190 (43%), Gaps = 25/190 (13%) Query 3 RQAGRWS-PTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAAL 61 R AG S T R++ AA A GY + IA GV ++Y HF K + A+ Sbjct 13 RPAGTDSVDTRQRVIDAACRCFAQFGYGPATNNQIAEMAGVTAGSVYYHFGTKNKLFEAV 72 Query 62 VRLAVEWPLELFGHITAMPVPAVVKLHR-------WLTESLDHLHASPYVLVSILITP-D 113 +++G I + AV H LTES+ H SP + + P D Sbjct 73 CD-------DVYGKILTRVMLAVSGSHSVVGLLRAVLTESMRINHESPELAGFVATAPID 125 Query 114 LHQ-----ESFVAERELVAEMERALVGLIETGQGEGDVRA-MHPLSAARLVQALFDALAL 167 + ESF + A M AL + +GQ GD+ A + P+ ARL+ A+ D A Sbjct 126 ARRHRELAESFATQG---ARMADALTDAVRSGQDAGDIAADLDPVRVARLISAVVDGFAH 182 Query 168 PEFAVSPDEI 177 + PDE+ Sbjct 183 AAVSADPDEM 192 >gi|229494137|ref|ZP_04387900.1| transcriptional regulator, TetR family [Rhodococcus erythropolis SK121] gi|229318499|gb|EEN84357.1| transcriptional regulator, TetR family [Rhodococcus erythropolis SK121] Length=211 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/194 (29%), Positives = 87/194 (45%), Gaps = 21/194 (10%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF 73 +IL AA+ + GY STS DI +A + + A+Y HFS+K ++ A++ + + F Sbjct 11 QILQGAADRFEVTGYGSTSMNDIVSAAQMTKGAVYFHFSSKDELAQAVIEEQHQISISAF 70 Query 74 GHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILIT-----PDLHQESFVAERELVAE 128 + A PA+ +L E L A P V I +T PD Q +VA Sbjct 71 TAVAATGAPALEQLVMVCHEMGRQLVAEPIVRAGIRLTLELASPDGSQGPYVA------- 123 Query 129 MERALVGLIETGQGEGDVR-AMHPLSAARLVQALFDALALPEFAVSP--------DEIVE 179 R L L E + EGD+R + P S R+V + F + L ++ DE+ Sbjct 124 WIRELRKLAEAAKLEGDIRDDVEPESVGRVVISAFTGVQLVSNVLTRRSDLNDRIDELFT 183 Query 180 FAMTALLSDPDRLA 193 + ++SD R A Sbjct 184 LLLAGVVSDKRRSA 197 >gi|84501810|ref|ZP_00999968.1| transcriptional regulator, TetR family protein [Oceanicola batsensis HTCC2597] gi|84389805|gb|EAQ02439.1| transcriptional regulator, TetR family protein [Oceanicola batsensis HTCC2597] Length=212 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 67/132 (51%), Gaps = 5/132 (3%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF 73 RIL AAEL + +GYS S ++A +GV +P IY + K+DIL + ++ P + Sbjct 23 RILSTAAELFSQKGYSGASVSELANMIGVTKPFIYYYTKNKQDILEQICIATIDLPHLVM 82 Query 74 GHITAMPVPAVVKLHRWL-----TESLDHLHASPYVLVSILITPDLHQESFVAERELVAE 128 + + + A V L++++ + + + S + + ++P++ + ++ A Sbjct 83 NEVFSEDLSATVSLYKFVRRFAWVQGQNQNYVSVFFREELNLSPEVSRYVLAQRKKFDAR 142 Query 129 MERALVGLIETG 140 +E L+ +ETG Sbjct 143 LEELLLKGVETG 154 >gi|288922880|ref|ZP_06417043.1| transcriptional regulator, TetR family [Frankia sp. EUN1f] gi|288345771|gb|EFC80137.1| transcriptional regulator, TetR family [Frankia sp. EUN1f] Length=226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/140 (31%), Positives = 66/140 (48%), Gaps = 12/140 (8%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 IL AAEL A RG+ T+ RDI G+ ++Y HF +K +LA ++R +E F Sbjct 27 ILAIAAELFATRGFPQTTVRDIGDEAGILSGSLYHHFDSKEAMLAEILRDFMENLRARFA 86 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLV-------SILITPDLHQESFVAERELVA 127 + A P +L + S +H P+ + ++ P+ FV + L Sbjct 87 EVVAQDRPPRARLDELVRGSFATIHQQPHAVALYQKESGALAGVPEFR---FVGQISL-- 141 Query 128 EMERALVGLIETGQGEGDVR 147 E+E+ VG+I GQ GD R Sbjct 142 EIEKMWVGVIVAGQQVGDFR 161 >gi|271968981|ref|YP_003343177.1| TetR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512156|gb|ACZ90434.1| putative transcriptional regulator, TetR family [Streptosporangium roseum DSM 43021] Length=194 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/147 (33%), Positives = 72/147 (49%), Gaps = 9/147 (6%) Query 10 PTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWP 69 P R++G A L A RG+ STS ++I AA GV + A+Y +F +K D+L + + Sbjct 7 PVRQRLIGEATRLFAERGFESTSVQEIVAAAGVTKGAMYHYFDSKDDLLHEIYGRVLRMQ 66 Query 70 LELFGHITAMPVPAVVKLHRWLTE----SLDHLHASPYVLVSI-LITPDLHQESFVAERE 124 +E + P P +LH + ++++L S S+ L+ PD ++S AER Sbjct 67 MERLTLLADGPGPVAERLHAAAADVVLTTVENLDDSKIFFRSMHLLAPDT-RKSVRAERR 125 Query 125 LVAEMERALVGLIETGQGEGDVRAMHP 151 E R LV GQ EG RA P Sbjct 126 RYHERFRDLV---TEGQREGVFRADTP 149 >gi|295695869|ref|YP_003589107.1| TetR family transcriptional regulator [Bacillus tusciae DSM 2912] gi|295411471|gb|ADG05963.1| transcriptional regulator, TetR family [Bacillus tusciae DSM 2912] Length=192 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/181 (32%), Positives = 80/181 (45%), Gaps = 26/181 (14%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF 73 +IL A+ L + +GY T+ RDIA A G+ ++Y H +K D+L +V + L Sbjct 9 QILAASERLFSEKGYHGTTIRDIAEASGILSGSLYAHIDSKEDLLFEIVNQGADNFLGAL 68 Query 74 GHITAMPVPAVVKLHRWLTESL----DHLHASPYVLVSILITPDLHQESFVAERELVAEM 129 I A P KL R L + +HLHA+ L D R+++ E Sbjct 69 EPIVASPGNPEEKLRRGLAAHIRVVGEHLHAAKVFLHDWRALSD-------ERRQIILEK 121 Query 130 ER---ALVG-LIETGQGEGDVRAMHP-------LSAARLVQALFDALALPEFAVSPDEIV 178 R AL G L+E G G R +HP LS A V +D PE + PDEI Sbjct 122 RRRYEALWGALLEEGIQAGVFRPVHPKFAQLVILSVANWVYQWYD----PEGPLGPDEIA 177 Query 179 E 179 + Sbjct 178 D 178 >gi|163854670|ref|YP_001628968.1| TetR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258398|emb|CAP40697.1| transcriptional regulator, TetR-family [Bordetella petrii] Length=220 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/164 (30%), Positives = 80/164 (49%), Gaps = 21/164 (12%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELF 73 RIL AA L A GY ++S D+AAA+GV + AIY +++ K+DI A++ LE+ Sbjct 39 RILEEAARLFARSGYENSSVADLAAALGVSKAAIYHYYTTKQDIYDAII-------LEVV 91 Query 74 GHITAMPVPAVV-------KLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELV 126 G +T AV +L +++ + V++L+ + + ER+ Sbjct 92 GGLTVAVSQAVAQADTASGRLRQFMLAHARYFEEHHPEFVTMLVG---YSGMAIPERDDA 148 Query 127 AEM----ERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALA 166 A + ER L G++ G G+ RAM S R V ++ + +A Sbjct 149 ARLRDGYERMLRGILADGMASGEFRAMDVASTGRAVLSMLNWMA 192 >gi|300784545|ref|YP_003764836.1| TetR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|208969091|dbj|BAG74314.1| gamma-butyrolactone autoregulator receptor [Amycolatopsis mediterranei] gi|299794059|gb|ADJ44434.1| TetR family transcriptional regulator [Amycolatopsis mediterranei U32] Length=221 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/123 (35%), Positives = 63/123 (52%), Gaps = 0/123 (0%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 +L AA EL GY++T+TR IA G+ Q ++Y HF AK DILAAL+ V L L Sbjct 26 VLEAAGELFTGAGYAATTTRAIAERAGLRQASLYYHFPAKEDILAALLAETVRPSLALAA 85 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVAERELVAEMERALV 134 + A PA V+L + L + + L ++ + P++ S R AE++ A Sbjct 86 RLVAGEAPAAVRLWALAYADIGLLGGARHNLGALYLLPEVGSPSLARFRIERAELKAAYG 145 Query 135 GLI 137 L+ Sbjct 146 RLV 148 >gi|145225177|ref|YP_001135855.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145217663|gb|ABP47067.1| transcriptional regulator, TetR family [Mycobacterium gilvum PYR-GCK] Length=220 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/58 (54%), Positives = 39/58 (68%), Gaps = 0/58 (0%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLE 71 RIL +A ELIA RGY + S DI A GV PAIY+HF++K D+LAAL V+ L+ Sbjct 19 RILASATELIAERGYHAVSMADIGVASGVVGPAIYRHFNSKSDLLAALFERVVDKLLK 76 >gi|300767812|ref|ZP_07077722.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494797|gb|EFK29955.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length=200 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/62 (47%), Positives = 38/62 (62%), Gaps = 0/62 (0%) Query 1 MPRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAA 60 M +A + + T ILG A EL GY +TSTRDIA A+G+ QPA+Y HF K I A Sbjct 1 MATRAEQMAKTHQAILGTARELFLRNGYDATSTRDIANAIGITQPALYHHFKDKEVIFLA 60 Query 61 LV 62 ++ Sbjct 61 VI 62 >gi|154247994|ref|YP_001418952.1| TetR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162079|gb|ABS69295.1| transcriptional regulator, TetR family [Xanthobacter autotrophicus Py2] Length=223 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/168 (29%), Positives = 82/168 (49%), Gaps = 7/168 (4%) Query 15 ILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLAVEWPLELFG 74 +L AAA L +G+ +TS D+A + V +P +Y +F +K D+L R+ +E Sbjct 34 VLKAAARLFNEKGFHATSLDDVARQLNVTKPTLYHYFRSKDDVLFECCRMGLEMIEAAAA 93 Query 75 HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPD--LHQESFVAERELVAEMERA 132 + + +L R L E + + SI TPD L E+ R L A+++RA Sbjct 94 TVPGSQASGLERL-RALMEQYAEAMTMDFGM-SISRTPDTALSPENRAELRRLKAQIDRA 151 Query 133 LVGLIETGQGEGDVRAMHPLSAARLVQALFDALA---LPEFAVSPDEI 177 L G+I++G +G + +AA + +A+A P+ ++P EI Sbjct 152 LRGVIQSGIEDGSIAPCDVRTAAFAIAGALNAIAHWYKPDGPLAPAEI 199 >gi|229017860|ref|ZP_04174743.1| Transcriptional regulator, TetR [Bacillus cereus AH1273] gi|229024063|ref|ZP_04180537.1| Transcriptional regulator, TetR [Bacillus cereus AH1272] gi|228737241|gb|EEL87762.1| Transcriptional regulator, TetR [Bacillus cereus AH1272] gi|228743451|gb|EEL93568.1| Transcriptional regulator, TetR [Bacillus cereus AH1273] Length=217 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (28%), Positives = 84/176 (48%), Gaps = 16/176 (9%) Query 13 LRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALV-----RLAVE 67 +RIL AA ++ +GY+STST +IA GV + I++++ K+D+L A+V + A Sbjct 23 MRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLFAVVMPTLTKFAAP 82 Query 68 WPLELFG-HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILI-----TPDLHQE-SFV 120 + ++ F I + L R + + + ++ ILI P+L E + Sbjct 83 FFIQAFAKEIFKKDYKSYEGLLRVVIHNRFEFAKKHFPMIKILIQEVPFQPELKSEIQQL 142 Query 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDE 176 E EL++ ++ +V Q EG++ M P S RL + L F + P+E Sbjct 143 VETELLSHFKKLIVKF----QEEGEIIEMPPSSVLRLTLSAVLGFLLTRFLLLPEE 194 >gi|229076815|ref|ZP_04209725.1| Transcriptional regulator, TetR [Bacillus cereus Rock4-18] gi|228706304|gb|EEL58567.1| Transcriptional regulator, TetR [Bacillus cereus Rock4-18] Length=217 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (28%), Positives = 85/176 (49%), Gaps = 16/176 (9%) Query 13 LRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALV-----RLAVE 67 +RIL AA ++ +GY+STST +IA GV + I++++ K+D+L A+V + A Sbjct 23 MRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLAVVMPTLTKFAAP 82 Query 68 WPLELFG-HITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILI-----TPDLHQE-SFV 120 + ++ F I + +L R + + + ++ ILI P+L E + Sbjct 83 FFVQAFAKEIFKTDYESYEELLRVVIHNRFEFAKKHFPMIKILIQEVPFQPELKSEIQQL 142 Query 121 AERELVAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALPEFAVSPDE 176 E EL++ ++ +V Q EG++ M P S RL + L F + P+E Sbjct 143 VETELLSHFKKLIVKF----QEEGEIIEMPPPSVLRLTLSAVLGFLLTRFLLLPEE 194 >gi|300781697|ref|ZP_07091551.1| transcription regulator AmtR [Corynebacterium genitalium ATCC 33030] gi|300533404|gb|EFK54465.1| transcription regulator AmtR [Corynebacterium genitalium ATCC 33030] Length=220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/129 (34%), Positives = 66/129 (52%), Gaps = 2/129 (1%) Query 2 PRQAGRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAAL 61 PR++GR + IL A+AEL +G+++TST +IA AVGV Q ++Y HF +K DI L Sbjct 13 PRRSGRTARE--EILDASAELFTKQGFATTSTHEIADAVGVRQASLYYHFPSKADIFLTL 70 Query 62 VRLAVEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQESFVA 121 ++ +E L L + A KL + L +S + + + P E FV Sbjct 71 LKSTIEPSLALGAVLRDSDASANQKLWALVAAQTRLLLSSKWNIGRLYQLPVATSEEFVE 130 Query 122 ERELVAEME 130 + AE+E Sbjct 131 YHKERAELE 139 >gi|209526291|ref|ZP_03274820.1| transcriptional regulator, TetR family [Arthrospira maxima CS-328] gi|209493220|gb|EDZ93546.1| transcriptional regulator, TetR family [Arthrospira maxima CS-328] Length=208 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/179 (28%), Positives = 87/179 (49%), Gaps = 17/179 (9%) Query 14 RILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLA-VEWPLEL 72 RIL AA +L A RGY +T+ +D+AA VGV + I+++F K+ IL +V VE +L Sbjct 17 RILKAATKLFARRGYEATTIKDLAAKVGVAEGTIFRYFPNKKAILVEVVTQGWVEILTDL 76 Query 73 FGHITAMPVPAVVKLHRWLTESLDH----LHASPYVLVSILITPDLHQE-SFVAERELVA 127 ++ V ++ +++ + H LH++ +L + H E S + E++A Sbjct 77 LTELSE------VANYQGISQIMRHRMMGLHSNADLLRVCFLEAQFHPELSDRIQSEIIA 130 Query 128 EMERALVGLIETGQGEGDVRAMHPLSAARLVQALFDALALP-----EFAVSPDEIVEFA 181 +M +T +G R M+P A++ +F + A SP+++ E A Sbjct 131 KMTDVAEAFFQTAIEKGVYRPMNPRIVAQVFLGMFAVAGFSYRTIIDPAASPNDMQEMA 189 >gi|311895237|dbj|BAJ27645.1| putative TetR family transcriptional regulator [Kitasatospora setae KM-6054] Length=210 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/132 (36%), Positives = 66/132 (50%), Gaps = 5/132 (3%) Query 6 GRWSPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLA 65 G + A R+L AA + A RGY +T+TRDIA A G+ A+Y H+ +K +LA + R Sbjct 14 GERTEAARRLLLAAVDSFARRGYHATTTRDIATAAGMSPAALYIHYPSKAALLAEISRTG 73 Query 66 VEWPLELFGHITAMPVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLH---QESFVAE 122 LEL A V ++ R L ES HA + L I I +LH +E F A Sbjct 74 HRVALELVERAEAAGTDPVERM-RALAESFTAWHARGHTLGRI-INHELHALPEEDFAAV 131 Query 123 RELVAEMERALV 134 EL +E ++ Sbjct 132 AELRVRIEETVL 143 >gi|119492809|ref|ZP_01623895.1| Transcriptional Regulator, TetR family protein [Lyngbya sp. PCC 8106] gi|119452962|gb|EAW34134.1| Transcriptional Regulator, TetR family protein [Lyngbya sp. PCC 8106] Length=207 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/157 (29%), Positives = 75/157 (48%), Gaps = 6/157 (3%) Query 9 SPTALRILGAAAELIALRGYSSTSTRDIAAAVGVEQPAIYKHFSAKRDILAALVRLA-VE 67 + T+ RIL AA L A +GY T+TRD+A A GV + I++HF K+ IL + +E Sbjct 12 TETSARILKAAQRLFAHKGYDGTTTRDLAQAAGVAEGTIFRHFPNKKAILIEVATEGWIE 71 Query 68 WPLELFGHITAM-PVPAVVKLHRWLTESLDHLHASPYVLVSILITPDLHQE-SFVAEREL 125 +L ++ M AV ++ R + LH + ++ + H E + E+ Sbjct 72 ILTDLLTELSEMGSYKAVAQVMR---RRMLSLHENTDLMRVCFLEAQFHPELRDRIQSEV 128 Query 126 VAEMERALVGLIETGQGEGDVRAMHPLSAARLVQALF 162 +A+M ET +G R M+P A++ +F Sbjct 129 IAKMTDVAEAFFETAMEKGAYRPMNPRIVAQVFLGMF 165 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 251148961304 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40