BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3162c

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610298|ref|NP_217678.1|  integral membrane protein [Mycobact...   267    3e-70
gi|339295996|gb|AEJ48107.1|  integral membrane protein [Mycobacte...   231    2e-59
gi|240169652|ref|ZP_04748311.1|  hypothetical protein MkanA1_1008...   134    3e-30
gi|296169176|ref|ZP_06850830.1|  conserved hypothetical protein [...   134    3e-30
gi|254819286|ref|ZP_05224287.1|  hypothetical protein MintA_05133...   129    1e-28
gi|342861069|ref|ZP_08717718.1|  putative integral membrane prote...   124    6e-27
gi|183981424|ref|YP_001849715.1|  hypothetical protein MMAR_1401 ...   122    2e-26
gi|118617961|ref|YP_906293.1|  hypothetical protein MUL_2475 [Myc...   121    4e-26
gi|31794339|ref|NP_856832.1|  integral membrane protein [Mycobact...   105    2e-21
gi|118463088|ref|YP_883201.1|  hypothetical protein MAV_4049 [Myc...  80.9    6e-14
gi|254776471|ref|ZP_05217987.1|  hypothetical protein MaviaA2_176...  80.1    1e-13
gi|118469609|ref|YP_888157.1|  hypothetical protein MSMEG_3866 [M...  57.4    7e-07
gi|333990623|ref|YP_004523237.1|  hypothetical protein JDM601_198...  54.7    5e-06
gi|108797136|ref|YP_637333.1|  hypothetical protein Mmcs_0156 [My...  52.4    2e-05
gi|126432759|ref|YP_001068450.1|  hypothetical protein Mjls_0146 ...  52.0    3e-05
gi|336459330|gb|EGO38273.1|  hypothetical protein MAPs_04282 [Myc...  51.6    4e-05
gi|145221078|ref|YP_001131756.1|  hypothetical protein Mflv_0474 ...  45.1    0.004
gi|120401210|ref|YP_951039.1|  hypothetical protein Mvan_0182 [My...  37.0    0.84 
gi|336459329|gb|EGO38272.1|  hypothetical protein MAPs_04281 [Myc...  34.7    5.3  
gi|54022425|ref|YP_116667.1|  hypothetical protein nfa4610 [Nocar...  33.9    8.6  


>gi|15610298|ref|NP_217678.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15842739|ref|NP_337776.1| hypothetical protein MT3251 [Mycobacterium tuberculosis CDC1551]
 gi|148663017|ref|YP_001284540.1| putative integral membrane protein [Mycobacterium tuberculosis 
H37Ra]
 69 more sequence titles
 Length=145

 Score =  267 bits (683),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  1    MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS  60
            MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS
Sbjct  1    MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS  60

Query  61   VVMIVVSGPTHVLAALSGFCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQ  120
            VVMIVVSGPTHVLAALSGFCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQ
Sbjct  61   VVMIVVSGPTHVLAALSGFCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQ  120

Query  121  VPWLPLAAPLAVLATYVLATRPFSR  145
            VPWLPLAAPLAVLATYVLATRPFSR
Sbjct  121  VPWLPLAAPLAVLATYVLATRPFSR  145


>gi|339295996|gb|AEJ48107.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
 gi|339299605|gb|AEJ51715.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=127

 Score =  231 bits (590),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)

Query  19   MMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAALSG  78
            MMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAALSG
Sbjct  1    MMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAALSG  60

Query  79   FCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVL  138
            FCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVL
Sbjct  61   FCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVL  120

Query  139  ATRPFSR  145
            ATRPFSR
Sbjct  121  ATRPFSR  127


>gi|240169652|ref|ZP_04748311.1| hypothetical protein MkanA1_10082 [Mycobacterium kansasii ATCC 
12478]
Length=152

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 84/135 (63%), Positives = 101/135 (75%), Gaps = 4/135 (2%)

Query  13   STVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHV  72
            S++FGL+MV SA  GSHG AV  G+AA +AV     FR AAT+AV+LSV ++++S P+  
Sbjct  16   SSLFGLLMVASAVAGSHGPAVAAGIAAAVAVAAGIAFRPAATIAVLLSVSVLLMSDPSQG  75

Query  73   LAALSGFCAAVYLVCRYGA----GVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAA  128
            LAALSG CAA YLVCR+      G+VAGS PT V+A GF  AGL ATSFPLQVPWLPL A
Sbjct  76   LAALSGLCAAAYLVCRHAVGTAIGLVAGSLPTIVSAAGFAVAGLVATSFPLQVPWLPLVA  135

Query  129  PLAVLATYVLATRPF  143
            P+AV+A YVLA RPF
Sbjct  136  PVAVVAIYVLAARPF  150


>gi|296169176|ref|ZP_06850830.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896155|gb|EFG75821.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=168

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 88/138 (64%), Positives = 96/138 (70%), Gaps = 4/138 (2%)

Query  10   RGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGP  69
            R  S  FGL+MVG AA G  G AV  G AA+IAV    VFR AAT+AVVLSV  +++S P
Sbjct  29   RVFSLAFGLLMVGLAADGPRGPAVAAGAAALIAVAAGTVFRPAATIAVVLSVATVMLSEP  88

Query  70   THVLAALSGFCAAVYLVCRYGAGVVA----GSWPTTVAAVGFTFAGLAATSFPLQVPWLP  125
              V  ALSG CAA YLVCR+  G  A    GSWPT V AVGFT AGL ATSFPLQ+PWLP
Sbjct  89   PPVFVALSGLCAAAYLVCRHAVGPSAAGVLGSWPTAVGAVGFTLAGLVATSFPLQLPWLP  148

Query  126  LAAPLAVLATYVLATRPF  143
            L APLA LA YVLA RPF
Sbjct  149  LTAPLAALAVYVLAVRPF  166


>gi|254819286|ref|ZP_05224287.1| hypothetical protein MintA_05133 [Mycobacterium intracellulare 
ATCC 13950]
Length=168

 Score =  129 bits (324),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 88/136 (65%), Positives = 102/136 (75%), Gaps = 4/136 (2%)

Query  12   LSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTH  71
             +T FGL+MVGSAA GSHG AV   +AA+++VG   VFR AAT+AV+L+VV + +S P  
Sbjct  31   FATGFGLLMVGSAAGGSHGFAVAAWVAALVSVGAGTVFRFAATVAVLLAVVTVTLSDPPV  90

Query  72   VLAALSGFCAAVYLVCRYGAG----VVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLA  127
            V  ALSG CAA YLVCR+ AG    VV  SWPT VAAVGFTFAGL ATSFPLQ+PWLPLA
Sbjct  91   VFVALSGLCAAAYLVCRHAAGAAAPVVLSSWPTAVAAVGFTFAGLVATSFPLQLPWLPLA  150

Query  128  APLAVLATYVLATRPF  143
            APL  L  Y+LA RPF
Sbjct  151  APLGALVIYLLAIRPF  166


>gi|342861069|ref|ZP_08717718.1| putative integral membrane protein [Mycobacterium colombiense 
CECT 3035]
 gi|342131513|gb|EGT84783.1| putative integral membrane protein [Mycobacterium colombiense 
CECT 3035]
Length=143

 Score =  124 bits (310),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 79/140 (57%), Positives = 97/140 (70%), Gaps = 4/140 (2%)

Query  8    GTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVS  67
            G    +T FGL+MVG AA G    AV   +AA+IAV V  VFR AAT+AV+L+V+ ++++
Sbjct  2    GAPAFATGFGLLMVGLAADGWQAPAVAAWVAALIAVAVGTVFRRAATVAVLLTVITVMLT  61

Query  68   GPTHVLAALSGFCAAVYLVCRYGAG----VVAGSWPTTVAAVGFTFAGLAATSFPLQVPW  123
             P  +  ALSG  AA YLVCR+G G    VV  SWP+ V AVGFTFAGL AT+FPLQ+PW
Sbjct  62   DPPLIFVALSGLSAAAYLVCRHGGGAAAAVVLDSWPSAVGAVGFTFAGLVATAFPLQLPW  121

Query  124  LPLAAPLAVLATYVLATRPF  143
            LPL APL  L  Y+LA RPF
Sbjct  122  LPLVAPLGALVIYLLAIRPF  141


>gi|183981424|ref|YP_001849715.1| hypothetical protein MMAR_1401 [Mycobacterium marinum M]
 gi|183174750|gb|ACC39860.1| conserved hypothetical transmembrane protein [Mycobacterium marinum 
M]
Length=149

 Score =  122 bits (306),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 89/147 (61%), Positives = 108/147 (74%), Gaps = 4/147 (2%)

Query  1    MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS  60
            M S A  G+R LS VFGL+MVG+A  G+ G  +V    AVIA+    + R AAT+AV+L+
Sbjct  1    MGSVAGTGSRVLSPVFGLLMVGAAGAGAQGPVIVALAGAVIALVAGILVRAAATVAVLLT  60

Query  61   VVMIVVSGPTHVLAALSGFCAAVYLVCRYGAGVVAG----SWPTTVAAVGFTFAGLAATS  116
            V+ +V+S P+ +LAAL G CA  YLV R+ AG  AG    +WPT VAA+GF FAGLAAT+
Sbjct  61   VLALVLSAPSQLLAALCGLCAVAYLVSRHAAGAPAGVAMATWPTIVAALGFAFAGLAATA  120

Query  117  FPLQVPWLPLAAPLAVLATYVLATRPF  143
            FPLQVPWLPLAAPLAVLA YVLATRPF
Sbjct  121  FPLQVPWLPLAAPLAVLAIYVLATRPF  147


>gi|118617961|ref|YP_906293.1| hypothetical protein MUL_2475 [Mycobacterium ulcerans Agy99]
 gi|118570071|gb|ABL04822.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans 
Agy99]
Length=149

 Score =  121 bits (303),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 89/147 (61%), Positives = 107/147 (73%), Gaps = 4/147 (2%)

Query  1    MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS  60
            M S A  G+R LS VFGL+MVG+A  G+ G  +V    AVIA+    + R AAT+AV+L+
Sbjct  1    MGSVAGTGSRVLSPVFGLLMVGAAGAGAQGPVIVALAGAVIALVAGILVRAAATVAVLLT  60

Query  61   VVMIVVSGPTHVLAALSGFCAAVYLVCRYGAGVVAG----SWPTTVAAVGFTFAGLAATS  116
            V+ +V+S P  +LAAL G CA  YLV R+ AG  AG    +WPT VAA+GF FAGLAAT+
Sbjct  61   VLALVLSAPPQLLAALCGLCAVAYLVSRHAAGAPAGVAMATWPTIVAALGFAFAGLAATA  120

Query  117  FPLQVPWLPLAAPLAVLATYVLATRPF  143
            FPLQVPWLPLAAPLAVLA YVLATRPF
Sbjct  121  FPLQVPWLPLAAPLAVLAIYVLATRPF  147


>gi|31794339|ref|NP_856832.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 gi|121639046|ref|YP_979270.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224991538|ref|YP_002646227.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|31619935|emb|CAD95279.1| POSSIBLE INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494694|emb|CAL73175.1| Possible integral membrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774653|dbj|BAH27459.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|341603085|emb|CCC65763.1| possible integral membrane protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=196

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)

Query  1   MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS  60
           MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS
Sbjct  1   MTSFAHPGTRGLSTVFGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLS  60

Query  61  VVMIVVSGPTHVLAALSGF  79
           VVMIVVSGPTHVLAALSGF
Sbjct  61  VVMIVVSGPTHVLAALSGF  79


>gi|118463088|ref|YP_883201.1| hypothetical protein MAV_4049 [Mycobacterium avium 104]
 gi|118164375|gb|ABK65272.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=150

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 77/132 (59%), Positives = 88/132 (67%), Gaps = 4/132 (3%)

Query  16   FGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAA  75
            FGL+MVG AA G    A V   AA+IAV    V R AAT+AV+L+ V +V S P     A
Sbjct  17   FGLLMVGLAAGGRPESAAVAVAAALIAVAAGTVLRPAATIAVLLAAVTVVTSNPPPACVA  76

Query  76   LSGFCAAVYLVCRYGAG----VVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLA  131
            LSG CA  YLVCR+  G    V+ GS  T VAAVGF+FAGL ATSFPLQ+PWLPL APL 
Sbjct  77   LSGLCATAYLVCRHAVGTPVPVILGSRTTAVAAVGFSFAGLVATSFPLQLPWLPLLAPLG  136

Query  132  VLATYVLATRPF  143
             LA Y+LA RPF
Sbjct  137  ALAIYLLAIRPF  148


>gi|254776471|ref|ZP_05217987.1| hypothetical protein MaviaA2_17629 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=164

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 77/132 (59%), Positives = 88/132 (67%), Gaps = 4/132 (3%)

Query  16   FGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAA  75
            FGL+MVG AA G    A V   AA+IAV    V R AAT+AV+L+ V +V S P     A
Sbjct  31   FGLLMVGLAAGGRPESAAVAVAAALIAVAAGTVLRPAATIAVLLAAVTVVTSNPPPACVA  90

Query  76   LSGFCAAVYLVCRYGAG----VVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLA  131
            LSG CA  YLVCR+  G    V+ GS  T VAAVGF+FAGL ATSFPLQ+PWLPL APL 
Sbjct  91   LSGLCATAYLVCRHAVGTPVPVILGSRTTAVAAVGFSFAGLVATSFPLQLPWLPLLAPLG  150

Query  132  VLATYVLATRPF  143
             LA Y+LA RPF
Sbjct  151  ALAIYLLAIRPF  162


>gi|118469609|ref|YP_888157.1| hypothetical protein MSMEG_3866 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170896|gb|ABK71792.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=158

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 49/77 (64%), Gaps = 2/77 (2%)

Query  69   PTHVLAALSGFCAAVYLVCRYGAG--VVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPL  126
            P  + AAL+G  AAVYL  R+ AG  VV  + P  + A+GFT A +    + L +PW+PL
Sbjct  68   PDVLYAALAGLSAAVYLAVRHAAGTSVVTTTRPMMLCALGFTAAAMLVGFWQLTLPWVPL  127

Query  127  AAPLAVLATYVLATRPF  143
            AAP+AV A Y++  RPF
Sbjct  128  AAPVAVGAVYLIVLRPF  144


>gi|333990623|ref|YP_004523237.1| hypothetical protein JDM601_1983 [Mycobacterium sp. JDM601]
 gi|333486591|gb|AEF35983.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=148

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 32/60 (54%), Positives = 42/60 (70%), Gaps = 3/60 (5%)

Query  84   YLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVLATRPF  143
            YLV R+ AG +  + PT +A +GFT AG+AAT+FP  +PWLPL AP AVL   V+  +PF
Sbjct  87   YLVLRH-AGTM--TLPTVIAVLGFTVAGVAATAFPWSLPWLPLLAPFAVLGVCVVVAQPF  143


>gi|108797136|ref|YP_637333.1| hypothetical protein Mmcs_0156 [Mycobacterium sp. MCS]
 gi|119866221|ref|YP_936173.1| hypothetical protein Mkms_0165 [Mycobacterium sp. KMS]
 gi|108767555|gb|ABG06277.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119692310|gb|ABL89383.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=156

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/55 (51%), Positives = 34/55 (62%), Gaps = 0/55 (0%)

Query  90   GAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVLATRPFS  144
            G G    + PT VAAV F     A  + P+ +PWLPLAAP+A+L  YVL  RPFS
Sbjct  85   GHGEARATPPTMVAAVAFALTATAVVALPVDIPWLPLAAPVALLVGYVLTLRPFS  139


>gi|126432759|ref|YP_001068450.1| hypothetical protein Mjls_0146 [Mycobacterium sp. JLS]
 gi|126232559|gb|ABN95959.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=156

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 26/46 (57%), Positives = 31/46 (68%), Gaps = 0/46 (0%)

Query  99   PTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVLATRPFS  144
            PT VAAV F     A  + P+ +PWLPLAAP+A+L  YVL  RPFS
Sbjct  94   PTMVAAVAFALTATAVVALPVDIPWLPLAAPVALLVGYVLTLRPFS  139


>gi|336459330|gb|EGO38273.1| hypothetical protein MAPs_04282 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=71

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 45/68 (67%), Positives = 50/68 (74%), Gaps = 4/68 (5%)

Query  80   CAAVYLVCRYGAG----VVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLAT  135
            CA  YLVCR+  G    V+ GS  T VAAVGF+FAGL ATSFPLQ+PWLPL APL  LA 
Sbjct  2    CATAYLVCRHAVGTPVPVILGSRTTAVAAVGFSFAGLVATSFPLQLPWLPLLAPLGALAI  61

Query  136  YVLATRPF  143
            Y+LA RPF
Sbjct  62   YLLAIRPF  69


>gi|145221078|ref|YP_001131756.1| hypothetical protein Mflv_0474 [Mycobacterium gilvum PYR-GCK]
 gi|145213564|gb|ABP42968.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=135

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 66/140 (48%), Positives = 82/140 (59%), Gaps = 9/140 (6%)

Query  9    TRGLSTV-FGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVV-  66
            TR L  V FG++M G+AA  + G A++V  AAV AV  +A  R A T+AVVL V  IV+ 
Sbjct  2    TRSLLPVAFGVLMTGAAAYRASGPALLVLGAAVAAVVASAWLRPAGTVAVVLVVGAIVLT  61

Query  67   -SGPTHVLAALSGFCAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLP  125
             S P H +  L+G  A VYLV  +    V    PT V AVGF        + PL VPWLP
Sbjct  62   PSAPLHTV--LAGLAATVYLVVLHTVATV----PTMVFAVGFGAVAAVVAALPLGVPWLP  115

Query  126  LAAPLAVLATYVLATRPFSR  145
            L A  A+LA Y+LA RPF+R
Sbjct  116  LIAAPALLAGYLLALRPFTR  135


>gi|120401210|ref|YP_951039.1| hypothetical protein Mvan_0182 [Mycobacterium vanbaalenii PYR-1]
 gi|119954028|gb|ABM11033.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=122

 Score = 37.0 bits (84),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 60/126 (48%), Positives = 78/126 (62%), Gaps = 4/126 (3%)

Query  20   MVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAALSGF  79
            MV +AA   HG  VV   AA+ AV V+A +R AAT AV+L+V+  V++    +   L+G 
Sbjct  1    MVAAAAYRVHGYGVVAAAAALAAVVVSAWWRPAATGAVLLAVLTTVLADAAPMHTVLAGL  60

Query  80   CAAVYLVCRYGAGVVAGSWPTTVAAVGFTFAGLAATSFPLQVPWLPLAAPLAVLATYVLA  139
             AAVYLV R+         PT   AVGF  A  A  + P+ VPWLPLAAPLA+LA Y+LA
Sbjct  61   AAAVYLVLRHTNPTA----PTAFFAVGFAAAAAAVLALPVHVPWLPLAAPLALLAGYLLA  116

Query  140  TRPFSR  145
             +PF+R
Sbjct  117  LKPFTR  122


>gi|336459329|gb|EGO38272.1| hypothetical protein MAPs_04281 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=97

 Score = 34.7 bits (78),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 32/72 (45%), Positives = 39/72 (55%), Gaps = 1/72 (1%)

Query  16  FGLMMVGSAAVGSHGLAVVVGLAAVIAVGVAAVFRLAATLAVVLSVVMIVVSGPTHVLAA  75
           FGL+MVG AA G    A V   AA+IAV    V R AAT+AV+L+ V +V S P    + 
Sbjct  17  FGLLMVGLAAGGRPESAAVAAAAALIAVAAGTVLRPAATIAVLLAAVTVVTSNPRRRASR  76

Query  76  LSGFCAAVYLVC  87
             G CA     C
Sbjct  77  CPG-CAPPPTWC  87


>gi|54022425|ref|YP_116667.1| hypothetical protein nfa4610 [Nocardia farcinica IFM 10152]
 gi|54013933|dbj|BAD55303.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=152

 Score = 33.9 bits (76),  Expect = 8.6, Method: Compositional matrix adjust.
 Identities = 36/93 (39%), Positives = 51/93 (55%), Gaps = 5/93 (5%)

Query  49   FRLAATLAVVLSVVMIVVSGPTHVL-AALSGFCAAVYLV----CRYGAGVVAGSWPTTVA  103
            FR AA  AV+L+V ++ ++    V+ AA +G  A  YL+        AGVV  + P+ + 
Sbjct  38   FRSAAVGAVLLTVAVLALAADIGVVEAAATGLVATAYLLNAATVAAPAGVVPTTLPSVLG  97

Query  104  AVGFTFAGLAATSFPLQVPWLPLAAPLAVLATY  136
            AVG T     A   PL + WLP  AP+AV+A Y
Sbjct  98   AVGGTACAATAAVLPLHLAWLPALAPVAVIALY  130



Lambda     K      H
   0.327    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128154014136


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40