BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3164c Length=320 Score E Sequences producing significant alignments: (Bits) Value gi|15610300|ref|NP_217680.1| methanol dehydrogenase transcriptio... 642 0.0 gi|253800198|ref|YP_003033199.1| methanol dehydrogenase transcri... 640 0.0 gi|31794341|ref|NP_856834.1| methanol dehydrogenase transcriptio... 639 0.0 gi|308373657|ref|ZP_07433219.2| methanol dehydrogenase transcrip... 638 0.0 gi|296169174|ref|ZP_06850828.1| methanol dehydrogenase transcrip... 598 3e-169 gi|240169650|ref|ZP_04748309.1| methanol dehydrogenase transcrip... 595 2e-168 gi|41409316|ref|NP_962152.1| MoxR3 [Mycobacterium avium subsp. p... 594 5e-168 gi|254819288|ref|ZP_05224289.1| MoxR3 [Mycobacterium intracellul... 593 2e-167 gi|183981422|ref|YP_001849713.1| methanol dehydrogenase transcri... 592 2e-167 gi|342861071|ref|ZP_08717720.1| MoxR3 [Mycobacterium colombiense... 590 7e-167 gi|118617963|ref|YP_906295.1| methanol dehydrogenase transcripti... 586 1e-165 gi|118462684|ref|YP_883204.1| ATPase [Mycobacterium avium 104] >... 555 5e-156 gi|108797134|ref|YP_637331.1| ATPase [Mycobacterium sp. MCS] >gi... 539 2e-151 gi|126432757|ref|YP_001068448.1| ATPase [Mycobacterium sp. JLS] ... 538 3e-151 gi|333990621|ref|YP_004523235.1| methanol dehydrogenase transcri... 536 2e-150 gi|120401208|ref|YP_951037.1| ATPase [Mycobacterium vanbaalenii ... 531 6e-149 gi|145221080|ref|YP_001131758.1| ATPase [Mycobacterium gilvum PY... 525 6e-147 gi|226363852|ref|YP_002781634.1| hypothetical protein ROP_44420 ... 504 6e-141 gi|54022423|ref|YP_116665.1| putative regulator [Nocardia farcin... 503 1e-140 gi|111021499|ref|YP_704471.1| magnesium chelatase [Rhodococcus j... 501 8e-140 gi|169628997|ref|YP_001702646.1| methanol dehydrogenase transcri... 500 1e-139 gi|333918363|ref|YP_004491944.1| hypothetical protein AS9A_0690 ... 478 5e-133 gi|256392262|ref|YP_003113826.1| ATPase AAA [Catenulispora acidi... 402 3e-110 gi|21224461|ref|NP_630240.1| regulatory protein [Streptomyces co... 374 8e-102 gi|271965375|ref|YP_003339571.1| methanol dehydrogenase regulato... 373 2e-101 gi|289768226|ref|ZP_06527604.1| ATPase [Streptomyces lividans TK... 373 2e-101 gi|118471031|ref|YP_888158.1| ATPase AAA [Mycobacterium smegmati... 370 2e-100 gi|329934284|ref|ZP_08284363.1| regulatory protein [Streptomyces... 367 1e-99 gi|119715714|ref|YP_922679.1| ATPase [Nocardioides sp. JS614] >g... 365 4e-99 gi|254167968|ref|ZP_04874816.1| ATPase, AAA family, putative [Ac... 365 6e-99 gi|84494292|ref|ZP_00993411.1| MoxR3 [Janibacter sp. HTCC2649] >... 360 2e-97 gi|317124511|ref|YP_004098623.1| ATPase associated with various ... 359 3e-97 gi|302865408|ref|YP_003834045.1| ATPase [Micromonospora aurantia... 359 4e-97 gi|315501953|ref|YP_004080840.1| ATPase [Micromonospora sp. L5] ... 359 4e-97 gi|332159057|ref|YP_004424336.1| hypothetical protein PNA2_1417 ... 358 9e-97 gi|257068032|ref|YP_003154287.1| MoxR-like ATPase [Brachybacteri... 356 3e-96 gi|238062764|ref|ZP_04607473.1| ATPase [Micromonospora sp. ATCC ... 355 6e-96 gi|14521486|ref|NP_126962.1| methanol dehydrogenase regulatory p... 354 8e-96 gi|212224834|ref|YP_002308070.1| protein TON_1683 [Thermococcus ... 354 8e-96 gi|18976889|ref|NP_578246.1| methanol dehydrogenase regulatory p... 354 1e-95 gi|159036501|ref|YP_001535754.1| ATPase [Salinispora arenicola C... 353 2e-95 gi|145593460|ref|YP_001157757.1| ATPase [Salinispora tropica CNB... 353 3e-95 gi|330465824|ref|YP_004403567.1| ATPase [Verrucosispora maris AB... 352 3e-95 gi|57641781|ref|YP_184259.1| MoxR-like AAA family ATPase [Thermo... 352 4e-95 gi|291301395|ref|YP_003512673.1| ATPase [Stackebrandtia nassauen... 352 4e-95 gi|14590644|ref|NP_142712.1| hypothetical protein PH0776 [Pyroco... 350 1e-94 gi|315231669|ref|YP_004072105.1| methanol dehydrogenase regulato... 350 1e-94 gi|341582467|ref|YP_004762959.1| hypothetical protein GQS_06920 ... 350 1e-94 gi|336322187|ref|YP_004602155.1| ATPase [Cellvibrio gilvus ATCC ... 348 6e-94 gi|291299107|ref|YP_003510385.1| ATPase [Stackebrandtia nassauen... 347 1e-93 >gi|15610300|ref|NP_217680.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium tuberculosis H37Rv] gi|15842741|ref|NP_337778.1| magnesium chelatase, putative [Mycobacterium tuberculosis CDC1551] gi|121639048|ref|YP_979272.1| putative methanol dehydrogenase transcriptional regulatory protein moxR3 [Mycobacterium bovis BCG str. Pasteur 1173P2] 66 more sequence titles Length=320 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/320 (100%), Positives = 320/320 (100%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH Sbjct 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA Sbjct 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 Query 301 GADVVSELLRRLPVPRISGT 320 GADVVSELLRRLPVPRISGT Sbjct 301 GADVVSELLRRLPVPRISGT 320 >gi|253800198|ref|YP_003033199.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN 1435] gi|289555437|ref|ZP_06444647.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN 605] gi|297635807|ref|ZP_06953587.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN 4207] gi|297732804|ref|ZP_06961922.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN R506] gi|313660137|ref|ZP_07817017.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN V2475] gi|253321701|gb|ACT26304.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN 1435] gi|289440069|gb|EFD22562.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN 605] gi|328459935|gb|AEB05358.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis KZN 4207] Length=320 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/320 (99%), Positives = 320/320 (100%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANAT+HH Sbjct 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATQHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA Sbjct 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 Query 301 GADVVSELLRRLPVPRISGT 320 GADVVSELLRRLPVPRISGT Sbjct 301 GADVVSELLRRLPVPRISGT 320 >gi|31794341|ref|NP_856834.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium bovis AF2122/97] gi|31619937|emb|CAD95281.1| PROBABLE METHANOL DEHYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN MOXR3 [Mycobacterium bovis AF2122/97] Length=320 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/320 (99%), Positives = 319/320 (99%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 MIMPAATTTAHCEAVLDEI RVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MIMPAATTTAHCEAVLDEIGRVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH Sbjct 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA Sbjct 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 Query 301 GADVVSELLRRLPVPRISGT 320 GADVVSELLRRLPVPRISGT Sbjct 301 GADVVSELLRRLPVPRISGT 320 >gi|308373657|ref|ZP_07433219.2| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis SUMu005] gi|308376008|ref|ZP_07445817.2| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis SUMu007] gi|308336703|gb|EFP25554.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis SUMu005] gi|308344483|gb|EFP33334.1| methanol dehydrogenase transcriptional regulator moxR3 [Mycobacterium tuberculosis SUMu007] Length=318 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%), Gaps = 0/318 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA Sbjct 1 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 60 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA Sbjct 61 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 120 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER Sbjct 121 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 180 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ Sbjct 181 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 240 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA Sbjct 241 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 300 Query 303 DVVSELLRRLPVPRISGT 320 DVVSELLRRLPVPRISGT Sbjct 301 DVVSELLRRLPVPRISGT 318 >gi|296169174|ref|ZP_06850828.1| methanol dehydrogenase transcriptional regulatory protein MoxR [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896153|gb|EFG75819.1| methanol dehydrogenase transcriptional regulatory protein MoxR [Mycobacterium parascrofulaceum ATCC BAA-614] Length=325 Score = 598 bits (1542), Expect = 3e-169, Method: Compositional matrix adjust. Identities = 298/319 (94%), Positives = 305/319 (96%), Gaps = 0/319 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M +PAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MTLPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL FTRVQFTPDLLPADLLGSTIYDMQSGRF FR+GPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLQFTRVQFTPDLLPADLLGSTIYDMQSGRFAFRSGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDGQTH+L PFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGQTHQLPRPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDE +MLRRRLERGS +PTVNQVVD HDLLAMRESVEQV+VHEDVLHYVVSLANATRHH Sbjct 181 ERDEAAMLRRRLERGSNEPTVNQVVDAHDLLAMRESVEQVSVHEDVLHYVVSLANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQL+RARALLLGRDYVIPEDVK LA AVAHRITLRPEMWVRKI Sbjct 241 PQVAVGASPRAELDLVQLARARALLLGRDYVIPEDVKALAIPAVAHRITLRPEMWVRKIQ 300 Query 301 GADVVSELLRRLPVPRISG 319 GADVV ELLRRLPVPR SG Sbjct 301 GADVVGELLRRLPVPRASG 319 >gi|240169650|ref|ZP_04748309.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium kansasii ATCC 12478] Length=325 Score = 595 bits (1535), Expect = 2e-168, Method: Compositional matrix adjust. Identities = 294/320 (92%), Positives = 307/320 (96%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MP ATTTA CEAVLDEIER+VVGKR+ALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MNMPVATTTARCEAVLDEIERIVVGKRAALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL+F RVQFTPDLLPADLLGSTIYDMQSGRFEFR GPIFTNLL+ADEINRTPPKTQ Sbjct 61 AAALGLEFKRVQFTPDLLPADLLGSTIYDMQSGRFEFRPGPIFTNLLMADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDG+THKL PFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGKTHKLPTPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDET+MLRRRL+RGSA+PTVNQVVD HDLLAMRESVEQVTVHEDVLHYVVSLA ATRHH Sbjct 181 ERDETAMLRRRLDRGSAEPTVNQVVDLHDLLAMRESVEQVTVHEDVLHYVVSLATATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQL+RARALLLGRDYVIPEDVK LATA++AHRITLRPEMWVRK+ Sbjct 241 PQVAVGASPRAELDLVQLARARALLLGRDYVIPEDVKALATASIAHRITLRPEMWVRKVQ 300 Query 301 GADVVSELLRRLPVPRISGT 320 GADVV ELLRRLPVPR +GT Sbjct 301 GADVVGELLRRLPVPRTNGT 320 >gi|41409316|ref|NP_962152.1| MoxR3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776473|ref|ZP_05217989.1| MoxR3 [Mycobacterium avium subsp. avium ATCC 25291] gi|41398136|gb|AAS05766.1| MoxR3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459327|gb|EGO38270.1| MoxR-like ATPase [Mycobacterium avium subsp. paratuberculosis S397] Length=325 Score = 594 bits (1532), Expect = 5e-168, Method: Compositional matrix adjust. Identities = 295/316 (94%), Positives = 304/316 (97%), Gaps = 0/316 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M +PAATTTAHCEA+LDEIERVVVGKR+AL LILTAVLARGH+LIEDLPGLGKTLIARSF Sbjct 1 MTLPAATTTAHCEAILDEIERVVVGKRNALRLILTAVLARGHILIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL FTRVQFTPDLLPADLLGSTIYDMQSGRF FRAGPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLQFTRVQFTPDLLPADLLGSTIYDMQSGRFAFRAGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDG+TH+L PFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGETHRLPKPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDETSMLRRRLERGSA+P VNQVVD HDLLAMRESVEQVTVHEDVLHYVVSLANATRHH Sbjct 181 ERDETSMLRRRLERGSAEPAVNQVVDAHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQL+RARALLLGRDYVIPEDVK LATAAVAHRITLRPEMWVRKI Sbjct 241 PQVAVGASPRAELDLVQLARARALLLGRDYVIPEDVKALATAAVAHRITLRPEMWVRKIQ 300 Query 301 GADVVSELLRRLPVPR 316 GADV+ ELL RLPVPR Sbjct 301 GADVIGELLHRLPVPR 316 >gi|254819288|ref|ZP_05224289.1| MoxR3 [Mycobacterium intracellulare ATCC 13950] Length=325 Score = 593 bits (1528), Expect = 2e-167, Method: Compositional matrix adjust. Identities = 294/320 (92%), Positives = 305/320 (96%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M +PAATTTAHCEA+LDEIERVVVGKR+AL LILTAVLARGH+LIEDLPGLGKTLIARSF Sbjct 1 MTLPAATTTAHCEAILDEIERVVVGKRAALKLILTAVLARGHILIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL FTRVQFTPDLLPADLLGSTIYDMQSGRF FR GPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLQFTRVQFTPDLLPADLLGSTIYDMQSGRFAFRPGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAE QVSIDG+TH+L+ PFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAERQVSIDGETHQLSRPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 ERDETSMLRRRLERGSA+PTVNQVVD HDLLAMRESVEQVTVHEDVLHYVVSLANATRHH Sbjct 181 ERDETSMLRRRLERGSAEPTVNQVVDAHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQL+RARALLLGRDYVIPEDVK LATAAVAHRITLRPEMWVRKI Sbjct 241 PQVAVGASPRAELDLVQLARARALLLGRDYVIPEDVKALATAAVAHRITLRPEMWVRKIQ 300 Query 301 GADVVSELLRRLPVPRISGT 320 GADV+ ELL RLPVPR + Sbjct 301 GADVIGELLHRLPVPRTGAS 320 >gi|183981422|ref|YP_001849713.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium marinum M] gi|183174748|gb|ACC39858.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium marinum M] Length=322 Score = 592 bits (1527), Expect = 2e-167, Method: Compositional matrix adjust. Identities = 293/318 (93%), Positives = 307/318 (97%), Gaps = 0/318 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MPAA TTA CEAV+DEIERVVVGKR+ALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MTMPAALTTAACEAVIDEIERVVVGKRAALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL+F RVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLL+ADEINRTPPKTQ Sbjct 61 AAALGLEFKRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLMADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDGQTHKL MPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGQTHKLPMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 E+DET+MLRRRLERGSA+ TVNQVVD HDLLAMRESVEQVTVH+DVLHYVVSLA ATR+H Sbjct 181 EQDETAMLRRRLERGSAEATVNQVVDLHDLLAMRESVEQVTVHDDVLHYVVSLATATRNH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVK LATA++AHRITLRPEMWVRKI Sbjct 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKALATASIAHRITLRPEMWVRKIQ 300 Query 301 GADVVSELLRRLPVPRIS 318 GADV++ELLRRLPVPR + Sbjct 301 GADVIAELLRRLPVPRTN 318 >gi|342861071|ref|ZP_08717720.1| MoxR3 [Mycobacterium colombiense CECT 3035] gi|342131515|gb|EGT84785.1| MoxR3 [Mycobacterium colombiense CECT 3035] Length=325 Score = 590 bits (1522), Expect = 7e-167, Method: Compositional matrix adjust. Identities = 292/320 (92%), Positives = 304/320 (95%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M +PAATTTAHCEA+LDEIERVVVGKRSAL LILT VLARGH+LIEDLPGLGKTLIARSF Sbjct 1 MTLPAATTTAHCEAILDEIERVVVGKRSALRLILTTVLARGHILIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL FTRVQFTPDLLPADLLGSTIYDMQSGRF FR GPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLQFTRVQFTPDLLPADLLGSTIYDMQSGRFAFRPGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDG+TH+L PFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGETHQLPKPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 E+DETSMLRRRLERGSA+PTVNQVVD HDLLAMRESVEQVTVHEDVLHYVVSLANATRHH Sbjct 181 EQDETSMLRRRLERGSAEPTVNQVVDAHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQL+RARALLLGRDYVIPEDVK LA AAV+HRITLRPEMWVRKI Sbjct 241 PQVAVGASPRAELDLVQLARARALLLGRDYVIPEDVKALAIAAVSHRITLRPEMWVRKIQ 300 Query 301 GADVVSELLRRLPVPRISGT 320 GADV++ELL RLPVPR + Sbjct 301 GADVIAELLHRLPVPRTGAS 320 >gi|118617963|ref|YP_906295.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium ulcerans Agy99] gi|118570073|gb|ABL04824.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium ulcerans Agy99] Length=322 Score = 586 bits (1511), Expect = 1e-165, Method: Compositional matrix adjust. Identities = 290/319 (91%), Positives = 306/319 (96%), Gaps = 0/319 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MPAA TTA CEAV+DEIERVVVGKR+ALTLILTAVLARGHVLIEDLPGLGKTLIARSF Sbjct 1 MTMPAALTTAACEAVIDEIERVVVGKRAALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL+F RVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLL+ADEINRTPPKTQ Sbjct 61 AAALGLEFKRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLMADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDGQTHKL +PFIVLATDNPIE+EGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAEGQVSIDGQTHKLPVPFIVLATDNPIEHEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 E+DET+MLRRRLERGSA+ TVNQVVD HDLLAMRESVEQVTVH+DVL YVVSLA ATR+H Sbjct 181 EQDETAMLRRRLERGSAEATVNQVVDLHDLLAMRESVEQVTVHDDVLQYVVSLATATRNH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVK LATA++AHRITLRPEMWVRKI Sbjct 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKALATASIAHRITLRPEMWVRKIQ 300 Query 301 GADVVSELLRRLPVPRISG 319 GADV++ELLRRLPVPR + Sbjct 301 GADVIAELLRRLPVPRTNA 319 >gi|118462684|ref|YP_883204.1| ATPase [Mycobacterium avium 104] gi|118163971|gb|ABK64868.1| ATPase family protein associated with various cellular activities (AAA) [Mycobacterium avium 104] Length=304 Score = 555 bits (1429), Expect = 5e-156, Method: Compositional matrix adjust. Identities = 276/295 (94%), Positives = 284/295 (97%), Gaps = 0/295 (0%) Query 22 VVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQFTPDLLPAD 81 +VVGKR+AL LILTAVLARGH+LIEDLPGLGKTLIARSFAAALGL FTRVQFTPDLLPAD Sbjct 1 MVVGKRNALRLILTAVLARGHILIEDLPGLGKTLIARSFAAALGLQFTRVQFTPDLLPAD 60 Query 82 LLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSIDGQTHKL 141 LLGSTIYDMQSGRF FRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSIDG+TH+L Sbjct 61 LLGSTIYDMQSGRFAFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSIDGETHRL 120 Query 142 AMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLERGSADPTV 201 PFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLERGSA+P V Sbjct 121 PKPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLERGSAEPAV 180 Query 202 NQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAELDLVQLSRA 261 NQVVD HDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAELDLVQL+RA Sbjct 181 NQVVDAHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAELDLVQLARA 240 Query 262 RALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLPVPR 316 RALLLGRDYVIPEDVK LATAAVAHRITLRPEMWVRKI GADV+ ELL RLPVPR Sbjct 241 RALLLGRDYVIPEDVKALATAAVAHRITLRPEMWVRKIQGADVIGELLHRLPVPR 295 >gi|108797134|ref|YP_637331.1| ATPase [Mycobacterium sp. MCS] gi|119866219|ref|YP_936171.1| ATPase [Mycobacterium sp. KMS] gi|108767553|gb|ABG06275.1| ATPase associated with various cellular activities, AAA_3 [Mycobacterium sp. MCS] gi|119692308|gb|ABL89381.1| ATPase associated with various cellular activities, AAA_3 [Mycobacterium sp. KMS] Length=320 Score = 539 bits (1389), Expect = 2e-151, Method: Compositional matrix adjust. Identities = 273/316 (87%), Positives = 284/316 (90%), Gaps = 0/316 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MPA TTTAHCEAVLDEI VVVGKR AL LILTAVLARGH+LIEDLPGLGKTLIARSF Sbjct 1 MNMPATTTTAHCEAVLDEIGEVVVGKRRALALILTAVLARGHILIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL FTRVQFTPDLLPADLLGSTIYDM SGRFEFR GPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLQFTRVQFTPDLLPADLLGSTIYDMHSGRFEFRHGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAE QVSIDG TH L PF+VLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAERQVSIDGVTHPLPTPFLVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 DE +MLRRRL+RGSA PTV QVVD LLAM+ESVEQVTVHEDVL YVVSLA A+R H Sbjct 181 GPDEVTMLRRRLDRGSAAPTVQQVVDGDGLLAMQESVEQVTVHEDVLQYVVSLAAASRQH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVG SPRAELDLVQLSRARALL GRD+VIPEDVK LA A+AHRI+LRPEMWVR++ Sbjct 241 PQVAVGVSPRAELDLVQLSRARALLAGRDFVIPEDVKSLAVPALAHRISLRPEMWVRRVQ 300 Query 301 GADVVSELLRRLPVPR 316 GADVV ELLRRLPVPR Sbjct 301 GADVVEELLRRLPVPR 316 >gi|126432757|ref|YP_001068448.1| ATPase [Mycobacterium sp. JLS] gi|126232557|gb|ABN95957.1| ATPase associated with various cellular activities, AAA_3 [Mycobacterium sp. JLS] Length=320 Score = 538 bits (1387), Expect = 3e-151, Method: Compositional matrix adjust. Identities = 273/316 (87%), Positives = 284/316 (90%), Gaps = 0/316 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MPA TTTAHCEAVLDEI VVVGKR AL LILTAVLARGH+LIEDLPGLGKTLIARSF Sbjct 1 MNMPAMTTTAHCEAVLDEIGEVVVGKRRALALILTAVLARGHILIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGL FTRVQFTPDLLPADLLGSTIYDM SGRFEFR GPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLQFTRVQFTPDLLPADLLGSTIYDMHSGRFEFRHGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAE QVSIDG TH L PF+VLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS Sbjct 121 AALLEAMAERQVSIDGVTHPLPTPFLVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 DE +MLRRRL+RGSA PTV QVVD LLAM+ESVEQVTVHEDVL YVVSLA A+R H Sbjct 181 GPDEVTMLRRRLDRGSAAPTVQQVVDGDGLLAMQESVEQVTVHEDVLQYVVSLAAASRQH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQVAVG SPRAELDLVQLSRARALL GRD+VIPEDVK LA A+AHRI+LRPEMWVR++ Sbjct 241 PQVAVGVSPRAELDLVQLSRARALLAGRDFVIPEDVKSLAVPALAHRISLRPEMWVRRVQ 300 Query 301 GADVVSELLRRLPVPR 316 GADVV ELLRRLPVPR Sbjct 301 GADVVEELLRRLPVPR 316 >gi|333990621|ref|YP_004523235.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium sp. JDM601] gi|333486589|gb|AEF35981.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium sp. JDM601] Length=334 Score = 536 bits (1380), Expect = 2e-150, Method: Compositional matrix adjust. Identities = 268/315 (86%), Positives = 285/315 (91%), Gaps = 0/315 (0%) Query 5 AATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAAL 64 A TT C AVLDEIE+ VVGKR ALTLILTAVLA GHVLIEDLPGLGKTLIARSFAAAL Sbjct 9 AETTAERCAAVLDEIEQAVVGKRPALTLILTAVLAGGHVLIEDLPGLGKTLIARSFAAAL 68 Query 65 GLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALL 124 GLDFTRVQFTPDLLPADLLG+TIYDM SGRFEFR GPIFTNL+LADEINRTPPKTQAALL Sbjct 69 GLDFTRVQFTPDLLPADLLGTTIYDMASGRFEFRRGPIFTNLVLADEINRTPPKTQAALL 128 Query 125 EAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDE 184 EAMAEGQVSIDGQTH+L PFIVLATDNPIEYEGTYPLPEAQLDRFAIRL L YL E+ E Sbjct 129 EAMAEGQVSIDGQTHRLPSPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLRLGYLPEQGE 188 Query 185 TSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVA 244 +MLRRRL+RG+A PTV +VVD D+ AMRESVEQV+VH+DVL YVVSLAN TRHHPQVA Sbjct 189 AAMLRRRLDRGAALPTVRKVVDADDVTAMRESVEQVSVHDDVLRYVVSLANGTRHHPQVA 248 Query 245 VGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADV 304 VGASPR+ELDL+QL+RARALLLGRDYVIPEDVK LAT+AVAHRI LRPEMWVR+I GADV Sbjct 249 VGASPRSELDLIQLARARALLLGRDYVIPEDVKALATSAVAHRIALRPEMWVRRIQGADV 308 Query 305 VSELLRRLPVPRISG 319 V ELLRRLPVPR G Sbjct 309 VDELLRRLPVPRTQG 323 >gi|120401208|ref|YP_951037.1| ATPase [Mycobacterium vanbaalenii PYR-1] gi|119954026|gb|ABM11031.1| ATPase associated with various cellular activities, AAA_3 [Mycobacterium vanbaalenii PYR-1] Length=320 Score = 531 bits (1367), Expect = 6e-149, Method: Compositional matrix adjust. Identities = 261/315 (83%), Positives = 282/315 (90%), Gaps = 0/315 (0%) Query 6 ATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALG 65 A TTA CEAVLDEI R VVGKR+AL LIL VLARGHVL+EDLPGLGKTLIA+SFAAALG Sbjct 5 ALTTARCEAVLDEIGRAVVGKRNALNLILITVLARGHVLVEDLPGLGKTLIAKSFAAALG 64 Query 66 LDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLE 125 L+FTRVQFTPDLLPADLLGSTIYDMQSGRFEFR GPIFTNLLL DEINRTPPKTQAALLE Sbjct 65 LEFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRRGPIFTNLLLGDEINRTPPKTQAALLE 124 Query 126 AMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDET 185 AMAEGQVS+DG TH+L PF+VLATDNPIEYEGTYPLPEAQLDRFAIRLEL+YL+E +E Sbjct 125 AMAEGQVSVDGVTHRLPQPFLVLATDNPIEYEGTYPLPEAQLDRFAIRLELKYLNESEEV 184 Query 186 SMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAV 245 +MLRRRLERGS PTV QVVD HDLLAM+ESVE VTVH+DVL Y+VSLA A+R HPQVAV Sbjct 185 TMLRRRLERGSTAPTVQQVVDSHDLLAMQESVENVTVHDDVLQYIVSLATASRQHPQVAV 244 Query 246 GASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVV 305 G SPRAELDLVQL+RARALLLGRDYVIPEDVK LA A+AHRI+ RPEMWVR++ GADV+ Sbjct 245 GTSPRAELDLVQLARARALLLGRDYVIPEDVKALAVPALAHRISPRPEMWVRRVQGADVI 304 Query 306 SELLRRLPVPRISGT 320 ELLRR PVPR T Sbjct 305 EELLRRTPVPRARET 319 >gi|145221080|ref|YP_001131758.1| ATPase [Mycobacterium gilvum PYR-GCK] gi|145213566|gb|ABP42970.1| ATPase associated with various cellular activities, AAA_3 [Mycobacterium gilvum PYR-GCK] Length=317 Score = 525 bits (1351), Expect = 6e-147, Method: Compositional matrix adjust. Identities = 259/311 (84%), Positives = 280/311 (91%), Gaps = 0/311 (0%) Query 6 ATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALG 65 A TTA CEAVLDEI R VVGKR AL LIL VLARGHVL+EDLPGLGKTLIA+SFAAALG Sbjct 5 ALTTARCEAVLDEIGRAVVGKRGALNLILITVLARGHVLVEDLPGLGKTLIAKSFAAALG 64 Query 66 LDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLE 125 L+FTRVQFTPDLLPADLLGSTIYDMQSGRFEFR GP+FTNLLL DEINRTPPKTQAALLE Sbjct 65 LEFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRRGPVFTNLLLGDEINRTPPKTQAALLE 124 Query 126 AMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDET 185 AMAE QVSIDG TH+L PF+VLATDNPIEYEGTYPLPEAQLDRFAIRLEL+YLSE +E Sbjct 125 AMAERQVSIDGATHRLPEPFLVLATDNPIEYEGTYPLPEAQLDRFAIRLELKYLSESEEA 184 Query 186 SMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAV 245 +MLRRRL+RGSA TVNQ+VD DLL M+ESVEQV+VH+DV+ YVVSLA A+R HPQVAV Sbjct 185 TMLRRRLDRGSAPATVNQIVDAQDLLHMQESVEQVSVHDDVVQYVVSLAAASRQHPQVAV 244 Query 246 GASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVV 305 GASPRAELDLVQL+RARALLLGRDYVIPEDVK LA +AHRI+LRPEMWVR++ GADVV Sbjct 245 GASPRAELDLVQLARARALLLGRDYVIPEDVKALAVPTMAHRISLRPEMWVRRVQGADVV 304 Query 306 SELLRRLPVPR 316 ELLRR PVPR Sbjct 305 EELLRRTPVPR 315 >gi|226363852|ref|YP_002781634.1| hypothetical protein ROP_44420 [Rhodococcus opacus B4] gi|226242341|dbj|BAH52689.1| hypothetical protein [Rhodococcus opacus B4] Length=318 Score = 504 bits (1299), Expect = 6e-141, Method: Compositional matrix adjust. Identities = 255/316 (81%), Positives = 273/316 (87%), Gaps = 0/316 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MPA TTA AVL E+ER VVGK LT IL AVLA GHVLIEDLPGLGKTL+ARSF Sbjct 1 MTMPAEVTTARAHAVLAEVERAVVGKHDELTSILLAVLAGGHVLIEDLPGLGKTLVARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGLDFTRVQFTPDLLPADLLG+TIYDM SGRFEFR GPIFTNLLLADEINRTPPKTQ Sbjct 61 AAALGLDFTRVQFTPDLLPADLLGATIYDMPSGRFEFRPGPIFTNLLLADEINRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVS+DG T L PF+VLATDNPIEYEGTYPLPEAQLDRFA+RL L YL+ Sbjct 121 AALLEAMAEGQVSVDGTTRMLPRPFVVLATDNPIEYEGTYPLPEAQLDRFALRLRLGYLT 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 E DE MLRRRL+RGSA V QVVD DLLAMRES+EQV+VH DVL YVV+LANATRHH Sbjct 181 ETDEHEMLRRRLDRGSAAAVVQQVVDAADLLAMRESLEQVSVHHDVLGYVVALANATRHH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQV VGASPRAELDLVQL+RARALL GRD+VIPED+K LA AVAHRI+LRPEMWVR+I Sbjct 241 PQVEVGASPRAELDLVQLARARALLAGRDFVIPEDIKALAVPAVAHRISLRPEMWVRRIR 300 Query 301 GADVVSELLRRLPVPR 316 DV++ELLRRLP PR Sbjct 301 SDDVLAELLRRLPAPR 316 >gi|54022423|ref|YP_116665.1| putative regulator [Nocardia farcinica IFM 10152] gi|54013931|dbj|BAD55301.1| putative regulator [Nocardia farcinica IFM 10152] Length=320 Score = 503 bits (1296), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 251/320 (79%), Positives = 274/320 (86%), Gaps = 0/320 (0%) Query 1 MIMPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSF 60 M MP T EAVL E+ RVVVGK+ L LI+ AVL+ GHVLIEDLPGLGKTLIARSF Sbjct 1 MTMPLDVTVQRAEAVLRELSRVVVGKQEELRLIMIAVLSGGHVLIEDLPGLGKTLIARSF 60 Query 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQ 120 AAALGLDFTRVQFTPDLLPADLLGSTIYDM SGRF FR GP+FTN+LLADE+NRTPPKTQ Sbjct 61 AAALGLDFTRVQFTPDLLPADLLGSTIYDMNSGRFNFRRGPVFTNVLLADEVNRTPPKTQ 120 Query 121 AALLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLS 180 AALLEAMAEGQVSIDG+T L PFIVLATDNPIEYEGTYPLPEAQLDRFA++L L YLS Sbjct 121 AALLEAMAEGQVSIDGETFPLPQPFIVLATDNPIEYEGTYPLPEAQLDRFAVQLRLGYLS 180 Query 181 ERDETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHH 240 E DET M+RRRLERGS P V+QVVD H LL MR+SVE V+VH DV+ YVV+LA ATR H Sbjct 181 EADETQMIRRRLERGSVQPEVDQVVDAHALLEMRQSVEYVSVHPDVVGYVVALAGATRGH 240 Query 241 PQVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIA 300 PQV VGASPRAELDLVQ++RARALLLGRDYVIPEDVK LA A+AHRITLRPEMWVR++ Sbjct 241 PQVEVGASPRAELDLVQMARARALLLGRDYVIPEDVKALAIPAMAHRITLRPEMWVRRVR 300 Query 301 GADVVSELLRRLPVPRISGT 320 G DV+ ELLRRLPVPR + T Sbjct 301 GEDVIGELLRRLPVPRATTT 320 >gi|111021499|ref|YP_704471.1| magnesium chelatase [Rhodococcus jostii RHA1] gi|110821029|gb|ABG96313.1| possible magnesium chelatase [Rhodococcus jostii RHA1] Length=316 Score = 501 bits (1289), Expect = 8e-140, Method: Compositional matrix adjust. Identities = 254/314 (81%), Positives = 272/314 (87%), Gaps = 0/314 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 MPA TTA AVL E+ER VVGK LT IL AVLA GHVLIEDLPGLGKTL+ARSFAA Sbjct 1 MPAEVTTARAHAVLAEVERAVVGKHDELTSILLAVLAGGHVLIEDLPGLGKTLVARSFAA 60 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDFTRVQFTPDLLPADLLG+TIYDM SGRFEFR GPIFTNLLLADEINRTPPKTQAA Sbjct 61 ALGLDFTRVQFTPDLLPADLLGATIYDMPSGRFEFRPGPIFTNLLLADEINRTPPKTQAA 120 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAMAEGQVS+DG T L PF+VLATDNPIEYEGTYPLPEAQLDRFA+RL L YL+E Sbjct 121 LLEAMAEGQVSVDGTTRILPRPFVVLATDNPIEYEGTYPLPEAQLDRFALRLRLGYLTET 180 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 DE MLRRRL+RGSA V QVVD DLLAMRES+EQV+VH DVL YVV+LANATRHHPQ Sbjct 181 DEHEMLRRRLDRGSAAVVVEQVVDAADLLAMRESLEQVSVHHDVLGYVVALANATRHHPQ 240 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 V VGASPRAELDLVQL+RARALL GRD+VIPED+K LA AVAHRI+LRPEMWVR+I Sbjct 241 VEVGASPRAELDLVQLARARALLSGRDFVIPEDIKALAVPAVAHRISLRPEMWVRRIRSD 300 Query 303 DVVSELLRRLPVPR 316 DV++ELLRRLP PR Sbjct 301 DVLAELLRRLPAPR 314 >gi|169628997|ref|YP_001702646.1| methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium abscessus ATCC 19977] gi|169240964|emb|CAM61992.1| Probable methanol dehydrogenase transcriptional regulatory protein MoxR3 [Mycobacterium abscessus] Length=320 Score = 500 bits (1288), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 250/317 (79%), Positives = 274/317 (87%), Gaps = 0/317 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 +P + T H +AVL EIERVVVGKR AL LIL +LARGHVLIEDLPGLGKTLIARSFA+ Sbjct 4 VPISIATRHADAVLTEIERVVVGKRDALQLILLTILARGHVLIEDLPGLGKTLIARSFAS 63 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDFTRVQFTPDLLPADLLGSTIYDM SG FEFR GPIFTNLLLADEINRTPPKTQ+A Sbjct 64 ALGLDFTRVQFTPDLLPADLLGSTIYDMSSGSFEFRTGPIFTNLLLADEINRTPPKTQSA 123 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAMAEGQVS+DGQT +L PF+VLATDNPIEYEGTYPLPEAQLDRFA+RL+L YL+E Sbjct 124 LLEAMAEGQVSLDGQTRQLPSPFVVLATDNPIEYEGTYPLPEAQLDRFAVRLQLGYLAED 183 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 E ML+RRL RGS PTV+QV+ DL+AMRE+VE V+VH DVL Y+V+LA ATR H Sbjct 184 LEIEMLQRRLSRGSTLPTVSQVIAADDLIAMREAVEAVSVHPDVLRYIVALAAATRSHSH 243 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 V VGASPRAELDLVQ+SRARALLLGRD+VIPEDVK LA AVAHRI+LRPEMWVR+I GA Sbjct 244 VEVGASPRAELDLVQMSRARALLLGRDFVIPEDVKALAVPAVAHRISLRPEMWVRRITGA 303 Query 303 DVVSELLRRLPVPRISG 319 VV ELL RLPVPR SG Sbjct 304 HVVDELLHRLPVPRASG 320 >gi|333918363|ref|YP_004491944.1| hypothetical protein AS9A_0690 [Amycolicicoccus subflavus DQS3-9A1] gi|333480584|gb|AEF39144.1| hypothetical protein AS9A_0690 [Amycolicicoccus subflavus DQS3-9A1] Length=333 Score = 478 bits (1230), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 239/319 (75%), Positives = 269/319 (85%), Gaps = 2/319 (0%) Query 4 PAAT-TTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 P+AT TT AVL EIE VVGKR ALT IL AVLA GHVLIEDLPGLGKTLIARSFAA Sbjct 9 PSATETTRRANAVLAEIEHAVVGKREALTNILLAVLAGGHVLIEDLPGLGKTLIARSFAA 68 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 A GL F+R+QFTPDLLP+DLLG+T+YDM+SG FEFR GP FTNLLLADEINRTPPKTQ+A Sbjct 69 AFGLKFSRIQFTPDLLPSDLLGATVYDMRSGAFEFREGPAFTNLLLADEINRTPPKTQSA 128 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAMAEGQ++IDG TH L PFIVLATDNPIEYEGTYPLPEAQLDRF++RL L YL Sbjct 129 LLEAMAEGQITIDGLTHTLPSPFIVLATDNPIEYEGTYPLPEAQLDRFSMRLSLGYLDPE 188 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +ML+RRL+RGS V+QV+ DLL MRES+EQV VH DVL YV+S+ANATRHH Q Sbjct 189 NEQAMLQRRLDRGSKPAVVSQVLSASDLLDMRESLEQVVVHPDVLKYVISIANATRHHSQ 248 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 + VGASPRAELDLVQL+R ALL GRD+V PEDVKELA A +AHRITLRPEMWVR+++GA Sbjct 249 IEVGASPRAELDLVQLARGHALLHGRDFVTPEDVKELAVATIAHRITLRPEMWVRRVSGA 308 Query 303 DVVSELLRRLPVPRI-SGT 320 +VSELL RLP PRI +GT Sbjct 309 QIVSELLNRLPAPRIDAGT 327 >gi|256392262|ref|YP_003113826.1| ATPase AAA [Catenulispora acidiphila DSM 44928] gi|256358488|gb|ACU71985.1| ATPase associated with various cellular activities AAA_3 [Catenulispora acidiphila DSM 44928] Length=387 Score = 402 bits (1034), Expect = 3e-110, Method: Compositional matrix adjust. Identities = 203/303 (67%), Positives = 242/303 (80%), Gaps = 0/303 (0%) Query 14 AVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQF 73 AVLDE+E+ VVGKR+AL L+L VLA GHVLIEDLPGLGKTL+ARSFA ALGLDFTR+QF Sbjct 50 AVLDEVEKAVVGKRAALELVLLGVLAGGHVLIEDLPGLGKTLMARSFATALGLDFTRIQF 109 Query 74 TPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVS 133 TPDLLP+D+ G+ YD +SG FR GP+FT LLLADEINRTPPKTQAALLEAMAEGQVS Sbjct 110 TPDLLPSDVTGAPFYDQRSGDMVFRPGPVFTQLLLADEINRTPPKTQAALLEAMAEGQVS 169 Query 134 IDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLE 193 +DG++H L F+VLATDNPIEYEGTY LPEAQLDRF +R+ + YL DE +ML RRL+ Sbjct 170 VDGKSHLLDPTFVVLATDNPIEYEGTYALPEAQLDRFLLRVRMGYLPPADEAAMLMRRLD 229 Query 194 RGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAEL 253 R + + ++VD +LLAMR S+E V V DV+ YVV+L NATR QV VGASPR L Sbjct 230 RRAERVDLARIVDAPELLAMRASLETVEVSADVVDYVVALVNATRAATQVQVGASPRGGL 289 Query 254 DLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLP 313 LVQL+RARA+L GRDYVIPEDVK +A A+AHRI+LRPE+WVR+++ +VV+ LL P Sbjct 290 ALVQLARARAVLSGRDYVIPEDVKAVAVPALAHRISLRPELWVRRVSADEVVASLLTATP 349 Query 314 VPR 316 PR Sbjct 350 TPR 352 >gi|21224461|ref|NP_630240.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|4160330|emb|CAA22801.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length=332 Score = 374 bits (961), Expect = 8e-102, Method: Compositional matrix adjust. Identities = 182/305 (60%), Positives = 237/305 (78%), Gaps = 0/305 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 AVL EI R VVGK AL ++ AVLA GHVL+EDLPGLGKTL+ARSFA LGLDF R Sbjct 18 QAGAVLREIGRAVVGKPDALEHVMLAVLAGGHVLVEDLPGLGKTLLARSFATTLGLDFRR 77 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 +QFTPDLLP+D+ G+ +YD +SG F GP+FT+LLLADEINRTPPKTQAALLEAMAE Sbjct 78 IQFTPDLLPSDVTGTPLYDQRSGEMVFHPGPVFTHLLLADEINRTPPKTQAALLEAMAES 137 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV++DG+T LA PF+V+AT NP+EYEGTY LPEAQLDRF +R+ + YL+ R+E +MLR Sbjct 138 QVTVDGETRPLADPFLVIATANPVEYEGTYSLPEAQLDRFQLRVRMGYLAAREELAMLRA 197 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPR 250 R++R + + + ++ D++A R VE+V + +D+L Y V+L ATR HPQ+++GASPR Sbjct 198 RIDRAAPEAVLERLAGPDDVVAWRAVVERVEIDDDLLEYAVALVGATRDHPQISIGASPR 257 Query 251 AELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLR 310 L LVQL+RARA+L GRDYV+PEDVK LA A+AHR++LRPE+WVR+++ DV+ E++ Sbjct 258 GGLALVQLARARAVLDGRDYVVPEDVKGLAVPALAHRVSLRPELWVREMSTDDVLREIVD 317 Query 311 RLPVP 315 + P Sbjct 318 SVGTP 322 >gi|271965375|ref|YP_003339571.1| methanol dehydrogenase regulatory protein [Streptosporangium roseum DSM 43021] gi|270508550|gb|ACZ86828.1| methanol dehydrogenase regulatory protein [Streptosporangium roseum DSM 43021] Length=325 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 188/313 (61%), Positives = 227/313 (73%), Gaps = 0/313 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 M A H VLD + VVVGKR AL L+L +LA GHVL+ED PGL KTL AR F Sbjct 1 MEPAEVGRHAREVLDRVNTVVVGKREALELVLAGILAGGHVLLEDFPGLAKTLTARCFGQ 60 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 LGLDFTR+QFTPDLLPAD+ GS +Y+ + G F FR GP+FTNLLLADEINRTPPKTQAA Sbjct 61 VLGLDFTRLQFTPDLLPADVTGSFLYNQRDGDFVFRRGPVFTNLLLADEINRTPPKTQAA 120 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QVS++G TH L PF VLAT NPIEYEGTYPLPEAQLDRF +R+ Y S Sbjct 121 LLEAMQERQVSVEGVTHPLRAPFHVLATANPIEYEGTYPLPEAQLDRFLLRVSFGYPSPE 180 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +ML RR+ R + + T+ VVD L M+ ++E V V + V Y+V L +ATR HPQ Sbjct 181 EEWTMLGRRMARRTEESTLEPVVDAVTLQEMQRALEDVAVEDSVGRYIVDLVSATREHPQ 240 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 + VGASPR L L+ SRARA+L GRDYVIPEDVK +A AA++HRI+LRPEMW+R++ Sbjct 241 LQVGASPRGSLALLLTSRARAVLDGRDYVIPEDVKRVAPAALSHRISLRPEMWLRRVDPV 300 Query 303 DVVSELLRRLPVP 315 ++ E+ R PVP Sbjct 301 SIIEEVCARTPVP 313 >gi|289768226|ref|ZP_06527604.1| ATPase [Streptomyces lividans TK24] gi|289698425|gb|EFD65854.1| ATPase [Streptomyces lividans TK24] Length=792 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 182/305 (60%), Positives = 237/305 (78%), Gaps = 0/305 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 AVL EI R VVGK AL ++ AVLA GHVL+EDLPGLGKTL+ARSFA LGLDF R Sbjct 18 QAGAVLREIGRAVVGKPDALEHVMLAVLAGGHVLVEDLPGLGKTLLARSFATTLGLDFRR 77 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 +QFTPDLLP+D+ G+ +YD +SG F GP+FT+LLLADEINRTPPKTQAALLEAMAE Sbjct 78 IQFTPDLLPSDVTGTPLYDQRSGEMVFHPGPVFTHLLLADEINRTPPKTQAALLEAMAES 137 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV++DG+T LA PF+V+AT NP+EYEGTY LPEAQLDRF +R+ + YL+ R+E +MLR Sbjct 138 QVTVDGETRPLADPFLVIATANPVEYEGTYSLPEAQLDRFQLRVRMGYLAAREELAMLRA 197 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPR 250 R++R + + + ++ D++A R VE+V + +D+L Y V+L ATR HPQ+++GASPR Sbjct 198 RIDRAAPEAVLERLAGPDDVVAWRAVVERVEIDDDLLEYAVALVGATRDHPQISIGASPR 257 Query 251 AELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLR 310 L LVQL+RARA+L GRDYV+PEDVK LA A+AHR++LRPE+WVR+++ DV+ E++ Sbjct 258 GGLALVQLARARAVLDGRDYVVPEDVKGLAVPALAHRVSLRPELWVREMSTDDVLREIVD 317 Query 311 RLPVP 315 + P Sbjct 318 SVGTP 322 >gi|118471031|ref|YP_888158.1| ATPase AAA [Mycobacterium smegmatis str. MC2 155] gi|118172318|gb|ABK73214.1| ATPase family protein associated with various cellular activities (AAA) [Mycobacterium smegmatis str. MC2 155] Length=739 Score = 370 bits (949), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 190/226 (85%), Positives = 207/226 (92%), Gaps = 0/226 (0%) Query 8 TTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLD 67 T A +VLDEIE+ VVGKR ALTLILT +LARGHVLIEDLPGLGKTLIARSFAAALGL Sbjct 11 TAAAARSVLDEIEKAVVGKRDALTLILTTLLARGHVLIEDLPGLGKTLIARSFAAALGLK 70 Query 68 FTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAM 127 FTRVQFTPDLLPADLLGST+YDMQSGRFEFR GPIFTNLLLADEINRTPPKTQAALLEAM Sbjct 71 FTRVQFTPDLLPADLLGSTVYDMQSGRFEFRPGPIFTNLLLADEINRTPPKTQAALLEAM 130 Query 128 AEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSM 187 AEGQVSIDGQTH+L PFIVLATDNPIEYEGTYPLPEAQLDRF++RLEL+YLSE+DET+M Sbjct 131 AEGQVSIDGQTHRLPAPFIVLATDNPIEYEGTYPLPEAQLDRFSVRLELKYLSEQDETAM 190 Query 188 LRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSL 233 LRRRL+RGSA+ V +VVD LAMRE+VEQV+VH+DVL YVV+L Sbjct 191 LRRRLDRGSAEAGVAEVVDGPRFLAMREAVEQVSVHDDVLRYVVAL 236 >gi|329934284|ref|ZP_08284363.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329305880|gb|EGG49735.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length=358 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 184/303 (61%), Positives = 227/303 (75%), Gaps = 0/303 (0%) Query 14 AVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQF 73 AVL+EI VVG L++ VLA GHVLIEDLPGLGKTL+ARSFA LGLDF R+QF Sbjct 47 AVLEEIRTAVVGSPDPPHLVMLGVLAGGHVLIEDLPGLGKTLLARSFATTLGLDFRRIQF 106 Query 74 TPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVS 133 TPDLLP+D+ G+ YD ++ FR GP+F+ LLLADEINRTPPKTQAALLEAMAE QV+ Sbjct 107 TPDLLPSDVTGAPFYDQRTADMVFRPGPVFSQLLLADEINRTPPKTQAALLEAMAESQVT 166 Query 134 IDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLE 193 IDG T L PF+V+AT NPIEYEGTY LPEAQLDRF +R+ + YL+ +E MLR R++ Sbjct 167 IDGSTRSLPSPFVVVATANPIEYEGTYTLPEAQLDRFLLRVRMGYLAASEEKDMLRARVD 226 Query 194 RGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAEL 253 R + + + ++LAMR +VE+V V ED+L YVV+L ATR HP V VGASPR L Sbjct 227 RARPEAVLRALSSPGEVLAMRAAVERVEVDEDLLEYVVALVRATREHPHVQVGASPRGGL 286 Query 254 DLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLP 313 LVQL+RARA+L RDYV PEDVK +A A+AHR+TL+PE+WVR+I G DVV E+ + +P Sbjct 287 ALVQLARARAVLDLRDYVTPEDVKSVAVPALAHRVTLKPELWVRQIDGDDVVREIAQSVP 346 Query 314 VPR 316 P+ Sbjct 347 APQ 349 >gi|119715714|ref|YP_922679.1| ATPase [Nocardioides sp. JS614] gi|119536375|gb|ABL80992.1| ATPase associated with various cellular activities, AAA_3 [Nocardioides sp. JS614] Length=340 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 186/301 (62%), Positives = 223/301 (75%), Gaps = 0/301 (0%) Query 15 VLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQFT 74 VLDE+E+ VVGKR AL +L AVLA+GHVL+ED PGLGKTL ARS A ALG+DF R QFT Sbjct 33 VLDEVEKAVVGKRKALVQVLAAVLAKGHVLLEDYPGLGKTLAARSLARALGIDFARAQFT 92 Query 75 PDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSI 134 PDLLPADL GS IYD + G FEFR GP+FT LLLADEINRTPPKTQAALLEAM E QV++ Sbjct 93 PDLLPADLTGSFIYDQRRGEFEFRRGPLFTGLLLADEINRTPPKTQAALLEAMQERQVTV 152 Query 135 DGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLER 194 +G+T L+ PF VLAT NPIEYEGT+PLPEAQLDRF +R+ Y S +E +L RR+ R Sbjct 153 EGETFPLSAPFHVLATANPIEYEGTFPLPEAQLDRFLLRVSFGYPSPHEEYDVLARRMAR 212 Query 195 GSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAELD 254 + +++V D LLAM+ +VE V V E V Y V LA ATRHHP V GASPR L Sbjct 213 RQEEVELDRVTDGAGLLAMQAAVETVAVDESVGRYCVELAVATRHHPDVLTGASPRGSLG 272 Query 255 LVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLPV 314 LV +RA ALL GRDYV+PEDVK +A +AHRIT++PE+W+ +G VV +L ++P Sbjct 273 LVLTARAFALLRGRDYVVPEDVKAIARPVLAHRITVKPELWMSDASGRRVVDAVLGQVPT 332 Query 315 P 315 P Sbjct 333 P 333 >gi|254167968|ref|ZP_04874816.1| ATPase, AAA family, putative [Aciduliprofundum boonei T469] gi|254168084|ref|ZP_04874931.1| ATPase, AAA family, putative [Aciduliprofundum boonei T469] gi|289596022|ref|YP_003482718.1| ATPase AAA [Aciduliprofundum boonei T469] gi|197622850|gb|EDY35418.1| ATPase, AAA family, putative [Aciduliprofundum boonei T469] gi|197623011|gb|EDY35578.1| ATPase, AAA family, putative [Aciduliprofundum boonei T469] gi|289533809|gb|ADD08156.1| ATPase associated with various cellular activities AAA_3 [Aciduliprofundum boonei T469] Length=310 Score = 365 bits (936), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 165/307 (54%), Positives = 231/307 (76%), Gaps = 0/307 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 E +++E+ +V+VGK L +L +LA GH+L ED PGL KTLI +SFA LG +F R Sbjct 4 KMEKIIEEVSKVIVGKDEVLRQVLYTILAGGHILFEDYPGLAKTLIVKSFAQVLGCEFKR 63 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 VQFTPDL+P+D+ G+ I+D ++ F+F GP+FTN+LLADEINR+PPKTQAALLEAM E Sbjct 64 VQFTPDLMPSDITGTYIFDRKTSEFKFMQGPVFTNILLADEINRSPPKTQAALLEAMQER 123 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV+I+G+T+KL PFIV+AT NPIEYEGTYPLPEAQLDRF ++L + Y S++DE +L+R Sbjct 124 QVTIEGETYKLEEPFIVIATQNPIEYEGTYPLPEAQLDRFLVKLAVGYPSKKDEIEILKR 183 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPR 250 R+ + +N++V +LL M++ VE + V +D+L Y+V + ATR H QV VGASPR Sbjct 184 RIAWKRDEIPLNKIVTREELLEMKKMVENIYVQDDILDYIVRIVRATRTHSQVEVGASPR 243 Query 251 AELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLR 310 L +++LSRARAL+ GRDYV+P+DVK + A+ HRI L+PE W+R + D+V ++L+ Sbjct 244 GSLAIMRLSRARALVYGRDYVVPDDVKAVTRIALVHRIILKPEPWIRGVRPGDIVEDVLK 303 Query 311 RLPVPRI 317 ++PVP++ Sbjct 304 KVPVPKV 310 >gi|84494292|ref|ZP_00993411.1| MoxR3 [Janibacter sp. HTCC2649] gi|84383785|gb|EAP99665.1| MoxR3 [Janibacter sp. HTCC2649] Length=331 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 180/311 (58%), Positives = 226/311 (73%), Gaps = 3/311 (0%) Query 9 TAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDF 68 TAH +L +ER VVGKR++L L+L VLA GHVL+ED PGLGKTL ARSFA ALGLDF Sbjct 14 TAH---ILAAVERAVVGKRASLELVLAGVLAGGHVLMEDFPGLGKTLAARSFAQALGLDF 70 Query 69 TRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMA 128 R QFTPDLLP+DL G+ IYD ++ F FR GP+FT LLLADEINRTPPKTQ+ALLEAM Sbjct 71 ARAQFTPDLLPSDLTGAFIYDQRTHEFVFRRGPLFTELLLADEINRTPPKTQSALLEAMQ 130 Query 129 EGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSML 188 EGQ++++G+T LA PF VLAT NP+EYEGTYPLPEAQ DRF +R+ Y + +E +L Sbjct 131 EGQITVEGETFALARPFHVLATANPVEYEGTYPLPEAQHDRFLLRISFGYPTAGEEWEVL 190 Query 189 RRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGAS 248 RRR+ER TV+ + D L+AM+ +VE VTV E V Y V LA ATR H + +GAS Sbjct 191 RRRVERQQEAQTVSAITDAAGLVAMQRAVETVTVDEGVGRYCVRLAAATRSHASLVLGAS 250 Query 249 PRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSEL 308 PR L L+ SRA A++ GRDYV PEDVK +A AA+ HR+T+RPE+W+ + V++ + Sbjct 251 PRGSLALMLTSRAYAVIRGRDYVTPEDVKAVAHAALDHRVTVRPELWINDVTARSVIASI 310 Query 309 LRRLPVPRISG 319 L +P P +G Sbjct 311 LSTVPTPSPTG 321 >gi|317124511|ref|YP_004098623.1| ATPase associated with various cellular activities AAA_3 [Intrasporangium calvum DSM 43043] gi|315588599|gb|ADU47896.1| ATPase associated with various cellular activities AAA_3 [Intrasporangium calvum DSM 43043] Length=348 Score = 359 bits (921), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 180/304 (60%), Positives = 223/304 (74%), Gaps = 0/304 (0%) Query 12 CEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRV 71 AVL E+ER VVGKR L L+L AVLA GHVL+ED PGLGKTL ARSFA LGL F R Sbjct 21 SNAVLTEVERAVVGKREPLRLVLAAVLAGGHVLLEDFPGLGKTLAARSFAQTLGLTFKRA 80 Query 72 QFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQ 131 QFTPDLLP D+ GS ++D +SG F FR GPIFT LLLADEINRTPPKTQAALLEAM E Q Sbjct 81 QFTPDLLPGDITGSFVFDQRSGDFGFRPGPIFTGLLLADEINRTPPKTQAALLEAMQERQ 140 Query 132 VSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRR 191 V+++G+T L PF VLAT NP+EYEGTYPLPEAQLDRF +R+ Y + +E +L R Sbjct 141 VTVEGRTFPLPRPFHVLATANPVEYEGTYPLPEAQLDRFLMRVSFGYPTVDEEWQILTNR 200 Query 192 LERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRA 251 + R + T+ V+ +LLAM+ +VE+V V E V Y V+LA ATR H V +GASPR Sbjct 201 MARQQEEQTLAAVISPDELLAMQAAVERVVVDESVGRYCVALAAATRSHGDVLMGASPRG 260 Query 252 ELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRR 311 L L+ SRA A++ GRDYV PEDVK +A +AHR+T++PE+W+ +++G++VVS LLR Sbjct 261 ALGLLLCSRAYAIIDGRDYVTPEDVKAVAKPVLAHRVTVKPELWMSEVSGSNVVSRLLRS 320 Query 312 LPVP 315 +P P Sbjct 321 VPTP 324 >gi|302865408|ref|YP_003834045.1| ATPase [Micromonospora aurantiaca ATCC 27029] gi|302568267|gb|ADL44469.1| ATPase associated with various cellular activities AAA_3 [Micromonospora aurantiaca ATCC 27029] Length=332 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 187/304 (62%), Positives = 226/304 (75%), Gaps = 0/304 (0%) Query 12 CEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRV 71 AVL+ + VVVGKR AL L+L +LA GHVL+EDLPGLGKTL AR FA ALGLDF R+ Sbjct 17 ARAVLEAVGTVVVGKRDALELVLAGILAGGHVLLEDLPGLGKTLTARCFAQALGLDFRRL 76 Query 72 QFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQ 131 QFTPDLLPAD+ GS +YD SG F FRAGP+FTNLLLADEINRTPPKTQ+ALLEAM E Q Sbjct 77 QFTPDLLPADVTGSFLYDQSSGDFAFRAGPVFTNLLLADEINRTPPKTQSALLEAMQEKQ 136 Query 132 VSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRR 191 VS++G T++L PF VLAT NPIEYEGTYPLPEAQLDRF +R+ Y + +E +LRRR Sbjct 137 VSVEGVTYRLDEPFHVLATANPIEYEGTYPLPEAQLDRFLLRVSFGYPTHDEEWDVLRRR 196 Query 192 LERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRA 251 + R + + VVD L AM+ ++E V V + + Y+V+L ATR HP V VGASPR Sbjct 197 IARRREEAEIKPVVDAATLRAMQAALEDVVVEDSIGRYIVALTAATREHPSVLVGASPRG 256 Query 252 ELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRR 311 L L+ LSR RA+L RDYV+PEDVK +A A+AHRITLRPEMW+R++ + VV E+L Sbjct 257 SLALLLLSRVRAVLANRDYVVPEDVKAVAAPALAHRITLRPEMWLRRVDPSFVVGEVLES 316 Query 312 LPVP 315 P P Sbjct 317 TPAP 320 >gi|315501953|ref|YP_004080840.1| ATPase [Micromonospora sp. L5] gi|315408572|gb|ADU06689.1| ATPase associated with various cellular activities AAA_3 [Micromonospora sp. L5] Length=332 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 188/304 (62%), Positives = 225/304 (75%), Gaps = 0/304 (0%) Query 12 CEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRV 71 AVL+ + VVVGKR AL L+L +LA GHVL+EDLPGLGKTL AR FA ALGLDF R+ Sbjct 17 ARAVLEAVGTVVVGKRDALELVLAGILAGGHVLLEDLPGLGKTLTARCFAQALGLDFRRL 76 Query 72 QFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQ 131 QFTPDLLPAD+ GS +YD SG F FRAGP+FTNLLLADEINRTPPKTQ+ALLEAM E Q Sbjct 77 QFTPDLLPADVTGSFLYDQSSGDFAFRAGPVFTNLLLADEINRTPPKTQSALLEAMQEKQ 136 Query 132 VSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRR 191 VS++G T++L PF VLAT NPIEYEGTYPLPEAQLDRF +R+ Y S +E +LRRR Sbjct 137 VSVEGVTYRLDEPFHVLATANPIEYEGTYPLPEAQLDRFLLRVSFGYPSHDEEWDVLRRR 196 Query 192 LERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRA 251 + R + + VVD L AM+ ++E V V + + Y+V L ATR HP V VGASPR Sbjct 197 IARRREEAEIKPVVDAATLRAMQAALEDVVVEDSIGRYIVVLTAATREHPSVLVGASPRG 256 Query 252 ELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRR 311 L L+ LSR RA+L RDYV+PEDVK +A A+AHRITLRPEMW+R++ + VV E+L Sbjct 257 SLALLLLSRVRAVLANRDYVVPEDVKAVAAPALAHRITLRPEMWLRRVDPSFVVGEVLES 316 Query 312 LPVP 315 P P Sbjct 317 TPAP 320 >gi|332159057|ref|YP_004424336.1| hypothetical protein PNA2_1417 [Pyrococcus sp. NA2] gi|331034520|gb|AEC52332.1| hypothetical protein PNA2_1417 [Pyrococcus sp. NA2] Length=314 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 167/309 (55%), Positives = 232/309 (76%), Gaps = 1/309 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 + V++E+++ +VGK L LILTA+LA GH+LIEDLPGL KTL+A+SFA ALGL+F R Sbjct 6 KAQKVIEEVKKAIVGKDHVLKLILTAILADGHILIEDLPGLAKTLMAKSFAKALGLEFRR 65 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 VQFTPDLLP+D+LG +++ ++ FEF+ GPIFTN+LLADEINR PPKTQ+ALLEAM E Sbjct 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPIFTNILLADEINRAPPKTQSALLEAMQER 125 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV+I+G T++L PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S+ +E +LRR Sbjct 126 QVTIEGVTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRIGYPSKEEEKEILRR 185 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHP-QVAVGASP 249 R+ER D + V+ D+L M++ VE+V V + ++ Y+ SL ATR + ++ +G SP Sbjct 186 RIERKQDDVEIRTVISPKDILEMQKEVEEVYVSDAIIEYITSLVWATRENKREIEIGVSP 245 Query 250 RAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELL 309 R L L++LSRA A + GRDYVIP+DVK +A A++HRI L+ E+W +++ V+ ++L Sbjct 246 RGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYTRVSQESVIEKIL 305 Query 310 RRLPVPRIS 318 ++PVP+ Sbjct 306 EKVPVPKFE 314 >gi|257068032|ref|YP_003154287.1| MoxR-like ATPase [Brachybacterium faecium DSM 4810] gi|256558850|gb|ACU84697.1| MoxR-like ATPase [Brachybacterium faecium DSM 4810] Length=332 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 177/302 (59%), Positives = 224/302 (75%), Gaps = 0/302 (0%) Query 14 AVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQF 73 AVLD +ER VVGKR +L L+L +LA GHVLIEDLPGLGKTL ARSFA ALGL FTR QF Sbjct 18 AVLDTVERAVVGKRDSLELVLAGILAGGHVLIEDLPGLGKTLAARSFAQALGLPFTRAQF 77 Query 74 TPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVS 133 TPDLLP+DL G+ ++D ++G F FR GP+FT LLLADE+NRTPPKTQ+ALLEAM E QV+ Sbjct 78 TPDLLPSDLTGAEVFDQRNGEFLFRPGPVFTGLLLADEVNRTPPKTQSALLEAMQERQVT 137 Query 134 IDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLE 193 ++G T L PF VLAT NPIE+EGTYPLPEAQLDRF +RL Y + DE ++ RRL+ Sbjct 138 VEGTTRALPRPFHVLATANPIEHEGTYPLPEAQLDRFLLRLSFGYPTAADEWDVVSRRLD 197 Query 194 RGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAEL 253 R + +V +V+D LLA++E+VE V V + + HY V L ATR H VGASPR L Sbjct 198 RRREEQSVTEVLDREGLLAVQEAVEDVHVEDAIGHYAVELVAATRTHQHSLVGASPRGTL 257 Query 254 DLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLP 313 L+ +RA A++ GR YV+PED+K LA A+ HR+T++PE+W++ GA VV +L ++P Sbjct 258 ALITCARALAVIRGRTYVVPEDIKALAHPALDHRVTVKPELWLQNATGAGVVESVLSQVP 317 Query 314 VP 315 VP Sbjct 318 VP 319 >gi|238062764|ref|ZP_04607473.1| ATPase [Micromonospora sp. ATCC 39149] gi|237884575|gb|EEP73403.1| ATPase [Micromonospora sp. ATCC 39149] Length=336 Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 191/313 (62%), Positives = 233/313 (75%), Gaps = 0/313 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 +P A AVLD + VVVGKR AL L+L +LA GHVL+EDLPGLGKTL ARSFA Sbjct 9 VPVAEVGRLARAVLDAVGSVVVGKRDALELVLAGILAGGHVLLEDLPGLGKTLTARSFAQ 68 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDF R+QFTPDLLPAD+ GS +YD ++G F FRAGP+FTNLLLADEINRTPPKTQ+A Sbjct 69 ALGLDFRRLQFTPDLLPADVTGSFLYDQRTGDFSFRAGPVFTNLLLADEINRTPPKTQSA 128 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QVS++G T++L PF VLAT NPIEYEGTYPLPEAQLDRF +R+ Y Sbjct 129 LLEAMQEKQVSVEGVTYRLDEPFHVLATANPIEYEGTYPLPEAQLDRFLLRVSFGYPERE 188 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +LRRR+ R + + VVD L AM+ ++E V V + + Y+V+L ATR HP Sbjct 189 EEWEVLRRRMGRRREEADIAPVVDAATLRAMQAALEDVVVEDSIGRYIVALTAATREHPS 248 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 V VGASPR L L+ L+RARA+ GRDYV+PEDVKE+A A+AHRITLRPEMW+R++ + Sbjct 249 VLVGASPRGSLALLLLARARAVFAGRDYVVPEDVKEVAAPALAHRITLRPEMWLRRVDPS 308 Query 303 DVVSELLRRLPVP 315 VV E+L + P P Sbjct 309 FVVGEVLDQTPAP 321 >gi|14521486|ref|NP_126962.1| methanol dehydrogenase regulatory protein [Pyrococcus abyssi GE5] gi|5458705|emb|CAB50192.1| moxR-3 methanol dehydrogenase regulatory protein [Pyrococcus abyssi GE5] Length=314 Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 165/313 (53%), Positives = 231/313 (74%), Gaps = 1/313 (0%) Query 7 TTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGL 66 + VL+E+++ +VGK + L L+L ++LA GH+LIEDLPGL KTL+A+SFA ALGL Sbjct 2 NVQVKAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGL 61 Query 67 DFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEA 126 +F RVQFTPDLLP+D+LG +++ ++ FEF+ GP+FTN+LLADEINR PPKTQ+ALLEA Sbjct 62 EFRRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEA 121 Query 127 MAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETS 186 M E QV+I+G T++L PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S+ +E Sbjct 122 MQERQVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKE 181 Query 187 MLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHP-QVAV 245 +L+RR+ER D +N V+ D+L M+ +E+V V + ++ Y+ SL ATR ++ V Sbjct 182 ILKRRIERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEV 241 Query 246 GASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVV 305 G SPR L L++LSRA A + GRDYVIP+DVK +A A++HRI L+ E+W +I D++ Sbjct 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDII 301 Query 306 SELLRRLPVPRIS 318 ++L ++PVP+ Sbjct 302 KKILEKVPVPKFE 314 >gi|212224834|ref|YP_002308070.1| protein TON_1683 [Thermococcus onnurineus NA1] gi|212009791|gb|ACJ17173.1| hypothetical protein TON_1683 [Thermococcus onnurineus NA1] Length=317 Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 167/316 (53%), Positives = 233/316 (74%), Gaps = 1/316 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 M + VL+E++R +VGK L LILT +LA GHVL+EDLPGL KTL+A+SFA Sbjct 1 MKVEEVSLKGNLVLEEVKRAIVGKDEVLKLILTTILADGHVLLEDLPGLAKTLMAKSFAK 60 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDF RVQFTPDLLP+D+LG +++D ++ FEF+ GP+FTN+LLADEINR PPKTQ+A Sbjct 61 ALGLDFKRVQFTPDLLPSDILGVSVFDQKTLEFEFKKGPVFTNILLADEINRAPPKTQSA 120 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QV+++G+T++L+ PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S+ Sbjct 121 LLEAMQERQVTVEGKTYELSKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKD 180 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRH-HP 241 +E +LRRR+ R + +N ++ +++ M+ ++E V V + +L Y+ + ATR Sbjct 181 EEIEILRRRMARKKEEVDINSILTPEEVVEMQRAIEDVYVSDAILEYITDIVIATREDRR 240 Query 242 QVAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAG 301 ++ VGASPR L L++LSRA A L GRDYVIP+DVK +A A++HR+ L+ E+W K++ Sbjct 241 EIEVGASPRGSLALLKLSRAYAALEGRDYVIPDDVKAIAVPALSHRLILKRELWYTKVSQ 300 Query 302 ADVVSELLRRLPVPRI 317 ++ +LL R+PVP+ Sbjct 301 ESIMEKLLERVPVPKF 316 >gi|18976889|ref|NP_578246.1| methanol dehydrogenase regulatory protein [Pyrococcus furiosus DSM 3638] gi|18892502|gb|AAL80641.1| methanol dehydrogenase regulatory protein [Pyrococcus furiosus DSM 3638] Length=314 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 163/309 (53%), Positives = 230/309 (75%), Gaps = 1/309 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 E V++E+++ +VGK L L+LT++LA GH+LIEDLPGL KTL+A+SFA ALGL+F R Sbjct 6 KAERVIEEVKKAIVGKDDVLKLVLTSILADGHILIEDLPGLAKTLMAKSFAKALGLEFKR 65 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 VQFTPDLLP+D++G +++ ++ FEF+ GP+FTN+LLADEINR PPKTQ+ALLEAM E Sbjct 66 VQFTPDLLPSDIIGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQEK 125 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV+++G+T++L PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S+ DE +LRR Sbjct 126 QVTVEGKTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEDEKEILRR 185 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRH-HPQVAVGASP 249 R+ER + ++ V+ +LL M+ +E V V E ++ Y+ S+ ATR + VG SP Sbjct 186 RIERKQEEVEIDTVLSPEELLEMQREIEDVYVSEAIIEYITSIVWATREDRKNIEVGVSP 245 Query 250 RAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELL 309 R L L++LSRA A + GRDYVIP+DVK +A A++HRI L+ E+W +++ V+ ++L Sbjct 246 RGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYTRVSQESVIMKIL 305 Query 310 RRLPVPRIS 318 ++PVP+ Sbjct 306 EKVPVPKFE 314 >gi|159036501|ref|YP_001535754.1| ATPase [Salinispora arenicola CNS-205] gi|157915336|gb|ABV96763.1| ATPase associated with various cellular activities AAA_3 [Salinispora arenicola CNS-205] Length=335 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 190/313 (61%), Positives = 231/313 (74%), Gaps = 0/313 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 +P AVLD + VVVGKR AL L+L +LA GHVL+EDLPGLGKTL ARSFA Sbjct 8 LPPTEVGQLAHAVLDAVGEVVVGKREALELVLAGILAGGHVLLEDLPGLGKTLTARSFAQ 67 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDF R+QFTPDLLPAD+ GS +YD +SG F FRAGP+FTNLLLADEINRTPPKTQ+A Sbjct 68 ALGLDFRRLQFTPDLLPADVTGSFLYDQRSGDFAFRAGPVFTNLLLADEINRTPPKTQSA 127 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QVS++G T++L PF VLAT NP+EYEGTYPLPEAQLDRF +R+ Y Sbjct 128 LLEAMQEKQVSVEGVTYRLDEPFHVLATANPVEYEGTYPLPEAQLDRFLLRVSFGYPDAG 187 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +LRRR+ R + + VVD L AM+ ++E V V + + Y+V+L ATR HP Sbjct 188 EEWEVLRRRMSRRREEAEIKPVVDAATLRAMQAALEDVVVEDSIGRYIVALTAATREHPS 247 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 V VGASPR L L+ L+R RA+ GRDYV+PEDVKE+A A+AHRITLRPE+W+R++A A Sbjct 248 VLVGASPRGSLALLLLARVRAVTAGRDYVVPEDVKEVAAPALAHRITLRPELWLRRVAPA 307 Query 303 DVVSELLRRLPVP 315 VV E+L P P Sbjct 308 FVVDEVLAATPAP 320 >gi|145593460|ref|YP_001157757.1| ATPase [Salinispora tropica CNB-440] gi|145302797|gb|ABP53379.1| ATPase associated with various cellular activities, AAA_3 [Salinispora tropica CNB-440] Length=335 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 189/313 (61%), Positives = 233/313 (75%), Gaps = 0/313 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 +PA VLD + VVVGKR AL L+L +LA GHVL+EDLPGLGKTL ARSFA Sbjct 8 LPATKVGHLAHTVLDAVGEVVVGKRDALELVLAGILAGGHVLLEDLPGLGKTLTARSFAQ 67 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDF R+QFTPDLLPAD+ GS +YD +SG F FRAGP+FTNLLLADEINRTPPKTQ+A Sbjct 68 ALGLDFRRLQFTPDLLPADVTGSFLYDQRSGDFAFRAGPVFTNLLLADEINRTPPKTQSA 127 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QVS++G T++L PF VLAT NP+EYEGTYPLPEAQLDRF +R+ Y Sbjct 128 LLEAMQEKQVSVEGVTYRLDEPFHVLATANPVEYEGTYPLPEAQLDRFLLRVSFGYPDPG 187 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +LRRR+ R + + VV+ L AM+ ++E V V + + Y+V+LA ATR HP Sbjct 188 EEWEVLRRRISRRREEAEIKPVVNAATLRAMQAALEDVVVEDSIGRYLVALAAATREHPS 247 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 V VGASPR L L+ L+R RA++ GRDYV+PEDVKE+A A+AHRITLRPE+W+R++A A Sbjct 248 VLVGASPRGSLALLLLARVRAVMAGRDYVVPEDVKEVAVPALAHRITLRPELWLRRVAPA 307 Query 303 DVVSELLRRLPVP 315 +V E+L P P Sbjct 308 VIVDEVLAATPAP 320 >gi|330465824|ref|YP_004403567.1| ATPase [Verrucosispora maris AB-18-032] gi|328808795|gb|AEB42967.1| ATPase [Verrucosispora maris AB-18-032] Length=335 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 192/313 (62%), Positives = 234/313 (75%), Gaps = 0/313 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 MP AVLD + +VVVGKR AL L+L +LA GHVL+EDLPGLGKTL AR FA Sbjct 8 MPPTEVGHLARAVLDAVGQVVVGKRDALELVLAGILAGGHVLLEDLPGLGKTLTARCFAQ 67 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 ALGLDF R+QFTPDLLPAD+ GS +YD +SG F FRAGP+FTNLLLADEINRTPPKTQ+A Sbjct 68 ALGLDFRRLQFTPDLLPADVTGSFLYDQRSGDFTFRAGPVFTNLLLADEINRTPPKTQSA 127 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QVS++G T++L PF VLAT NPIEYEGTYPLPEAQLDRF +R+ Y + Sbjct 128 LLEAMQEKQVSVEGVTYRLDEPFHVLATANPIEYEGTYPLPEAQLDRFLLRVSFGYPPQD 187 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +LRRR+ R + + VVD L AM+ ++E VTV + V Y+V+L ATR HP Sbjct 188 EEWEVLRRRMARRREEADIKPVVDAATLRAMQAALEDVTVEDSVGRYMVALTAATREHPS 247 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 V VGASPR L L+ L+R RA+L GRD+V+PEDVKE+A A+AHRITLRPEMW+R++ + Sbjct 248 VLVGASPRGSLALLLLARVRAVLSGRDFVVPEDVKEVAVPALAHRITLRPEMWLRRVDPS 307 Query 303 DVVSELLRRLPVP 315 VV E+L + P P Sbjct 308 FVVGEVLDQTPAP 320 >gi|57641781|ref|YP_184259.1| MoxR-like AAA family ATPase [Thermococcus kodakarensis KOD1] gi|57160105|dbj|BAD86035.1| MoxR-related ATPase, AAA superfamily [Thermococcus kodakarensis KOD1] Length=317 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 167/308 (55%), Positives = 234/308 (76%), Gaps = 1/308 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 + VL E+ +V+VGK + L +IL +LA GHVLIEDLPGL KTL+A+SFA ALGLDF R Sbjct 9 KADLVLSEVGKVIVGKENVLKMILATILADGHVLIEDLPGLAKTLMAKSFAGALGLDFKR 68 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 VQFTPDLLP+D++G ++++ ++ FEFR GP+FTN+LLADE+NR+PPKTQ+ALLEAM E Sbjct 69 VQFTPDLLPSDIIGVSVFNQKTLEFEFRKGPVFTNILLADEVNRSPPKTQSALLEAMQER 128 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV+++G+T+ L PF+V+AT NPIE EGTYPLPEAQLDRF +RL + Y ++ +E +LRR Sbjct 129 QVTVEGKTYPLPRPFVVIATQNPIEQEGTYPLPEAQLDRFLVRLHVGYPTKEEELEILRR 188 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ-VAVGASP 249 R+ R S + +V+ VV ++L M+ +VE V V + VL Y+V + ATR + V VGASP Sbjct 189 RIGRKSDEVSVSPVVTAEEVLEMQRAVEDVYVSDPVLEYIVDIVEATRRDKKDVEVGASP 248 Query 250 RAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELL 309 R L L++L+RA A + GRDYVIP+DVK +A A++HR+ L+ E+W K++ V++++L Sbjct 249 RGSLALLKLARAYAAIEGRDYVIPDDVKAVAIPALSHRLILKRELWYTKVSQEKVMAKIL 308 Query 310 RRLPVPRI 317 R+PVP+ Sbjct 309 ERVPVPKF 316 >gi|291301395|ref|YP_003512673.1| ATPase [Stackebrandtia nassauensis DSM 44728] gi|290570615|gb|ADD43580.1| ATPase associated with various cellular activities AAA_3 [Stackebrandtia nassauensis DSM 44728] Length=336 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 177/313 (57%), Positives = 228/313 (73%), Gaps = 0/313 (0%) Query 3 MPAATTTAHCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAA 62 MP + T VLD + +VVVGKR +L L+L +LA GHVL EDLPGL KTL AR FA Sbjct 7 MPLSEVTKRATEVLDAVNQVVVGKRESLELVLAGILAGGHVLFEDLPGLAKTLTARUFAQ 66 Query 63 ALGLDFTRVQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAA 122 LGL F R+QFTPDLLPAD+ GS +Y+ + F+FR GPIFTNLLLADEINRTPPKTQAA Sbjct 67 TLGLHFNRLQFTPDLLPADVTGSFLYNQKQADFQFRQGPIFTNLLLADEINRTPPKTQAA 126 Query 123 LLEAMAEGQVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSER 182 LLEAM E QVS++G T++L PF VLAT NPIE EGTYPLPEAQLDRF +R+ Y Sbjct 127 LLEAMQERQVSVEGTTYRLPQPFFVLATANPIEQEGTYPLPEAQLDRFLLRVTFGYPDRG 186 Query 183 DETSMLRRRLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ 242 +E +LRRRL R + ++ +VD ++AM++++E V + + Y+V + ATR HPQ Sbjct 187 EEWEVLRRRLSRRREEAQLSPIVDAATVVAMQDALEDVAFDDSIGQYIVEIVAATREHPQ 246 Query 243 VAVGASPRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGA 302 + VGASPR L L LSRA+A+L GRDYVIPEDVK +A AA+ HR++L+PE+W++++ A Sbjct 247 LQVGASPRGSLALTLLSRAKAVLAGRDYVIPEDVKTVAPAALTHRVSLKPELWLQQVDPA 306 Query 303 DVVSELLRRLPVP 315 V++E+ R+P P Sbjct 307 AVIAEVCARVPAP 319 >gi|14590644|ref|NP_142712.1| hypothetical protein PH0776 [Pyrococcus horikoshii OT3] gi|3257185|dbj|BAA29868.1| 314aa long hypothetical protein [Pyrococcus horikoshii OT3] Length=314 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/309 (54%), Positives = 228/309 (74%), Gaps = 1/309 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 + V++E+++ +VGK + L L+L +LA GH+LIEDLPGL KTL+A+SFA ALGL+F R Sbjct 6 KAQMVIEEVKKAIVGKDNVLKLVLATILADGHILIEDLPGLAKTLMAKSFAKALGLEFKR 65 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 VQFTPDLLP+D+LG +++ ++ FEF+ GP+FTN+LLADEINR PPKTQ+ALLEAM E Sbjct 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQER 125 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QV+I+G T+KL PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S+ +E +LRR Sbjct 126 QVTIEGVTYKLPKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRMGYPSKDEEKEILRR 185 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQ-VAVGASP 249 R+ER + + V+ D+L M+ VE V V + ++ Y+ SL ATR + + +G SP Sbjct 186 RIERKQDEVEIETVLSPKDVLKMQREVEDVYVSDAIIEYITSLVWATREDKRDIEIGVSP 245 Query 250 RAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELL 309 R L L++LSRA A + GRDYVIP+DVK +A A++HRI L+ E+W +++ V+ ++L Sbjct 246 RGSLALLKLSRAYAAIEGRDYVIPDDVKAVAIPALSHRIILKRELWYTRVSQESVIEKIL 305 Query 310 RRLPVPRIS 318 R+PVP+ Sbjct 306 ERVPVPKFE 314 >gi|315231669|ref|YP_004072105.1| methanol dehydrogenase regulatory protein [Thermococcus barophilus MP] gi|315184697|gb|ADT84882.1| methanol dehydrogenase regulatory protein [Thermococcus barophilus MP] Length=317 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 163/305 (54%), Positives = 231/305 (76%), Gaps = 1/305 (0%) Query 15 VLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQFT 74 +L+E+ + +VGK L LILT +LA GH+LIEDLPGL KTL+A+SFA ALG+ F RVQFT Sbjct 13 ILNEVGKAIVGKEEVLKLILTTILADGHILIEDLPGLAKTLMAKSFATALGVKFRRVQFT 72 Query 75 PDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSI 134 PDLLP+D+LG ++++ ++ FEFR GPIFTN+LLADEINR PPKTQ+ALLEAM E QV+I Sbjct 73 PDLLPSDILGVSVFNQKTLEFEFRKGPIFTNILLADEINRAPPKTQSALLEAMQERQVTI 132 Query 135 DGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLER 194 +G+T+ L PF+V+AT NPIE EGTYPLPEAQLDRF +RL + Y ++++E +LRRR+ER Sbjct 133 EGKTYYLDRPFVVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPTKQEEIEILRRRIER 192 Query 195 GSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHP-QVAVGASPRAEL 253 + +N +V +++ M+++VE V V + VL Y+ + ATR + ++ +GASPR L Sbjct 193 KKEEVDINPIVTPEEVVEMQKAVEDVYVSDAVLEYITDIVKATRENKREIDIGASPRGSL 252 Query 254 DLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLP 313 L++LSRA A L GRDYVIP+DVK++A A++HR+ L+ E+W +++ V+ +L ++P Sbjct 253 ALLKLSRAYAALEGRDYVIPDDVKKVAVPALSHRLILKRELWYTRVSQESVMQRILEKIP 312 Query 314 VPRIS 318 VP+ Sbjct 313 VPKFE 317 >gi|341582467|ref|YP_004762959.1| hypothetical protein GQS_06920 [Thermococcus sp. 4557] gi|340810125|gb|AEK73282.1| hypothetical protein GQS_06920 [Thermococcus sp. 4557] Length=317 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 167/305 (55%), Positives = 226/305 (75%), Gaps = 1/305 (0%) Query 14 AVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQF 73 AVL E+ + +VGK L LILT +LA GHVL+EDLPGL KTL+A+SFA ALG+ FTRVQF Sbjct 12 AVLGEVRKAIVGKDEVLRLILTTILADGHVLLEDLPGLAKTLMAKSFAKALGVQFTRVQF 71 Query 74 TPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVS 133 TPDLLP+D+LG ++++ ++ FEFR GP+FTN+LLADEINR PPKTQ+ALLEAM E Q + Sbjct 72 TPDLLPSDILGVSVFNQKTLEFEFRKGPVFTNVLLADEINRAPPKTQSALLEAMQERQAT 131 Query 134 IDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLE 193 I+G T+ L PFIV+AT NPIE EGTYPLPEAQLDRF +RL + Y S +E +LRRR+ Sbjct 132 IEGNTYSLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSRAEEIEILRRRMA 191 Query 194 RGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHP-QVAVGASPRAE 252 R +P V V+ +++ M+ +VE+V V + +L Y+ + ATR ++ +GASPR Sbjct 192 RKKEEPDVQTVLSAEEVVEMQRAVEEVYVSDAILEYITDIVTATREDKREIEIGASPRGS 251 Query 253 LDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRL 312 L L++LSRA A L GRDYVIP+DVK +A A++HR+ L+ E+W K++ ++ +LL R+ Sbjct 252 LALLKLSRAYAALNGRDYVIPDDVKAVAVPALSHRLILKRELWYTKVSQESIMGKLLERV 311 Query 313 PVPRI 317 PVP+ Sbjct 312 PVPKF 316 >gi|336322187|ref|YP_004602155.1| ATPase [Cellvibrio gilvus ATCC 13127] gi|336105768|gb|AEI13587.1| ATPase associated with various cellular activities AAA_3 [Cellvibrio gilvus ATCC 13127] Length=328 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 180/302 (60%), Positives = 217/302 (72%), Gaps = 0/302 (0%) Query 14 AVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQF 73 AVLDE+ VVVG R LT+ L A+LA GHVL ED+PGLGKTL ARS A ALGLDF RVQ Sbjct 17 AVLDEVATVVVGMREPLTVALAAILAGGHVLFEDVPGLGKTLAARSLATALGLDFHRVQC 76 Query 74 TPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVS 133 TPDLLP+D+ GS+++D S FEFR GP+F LLLADEINRT PKTQ+ALLEAMAE QV+ Sbjct 77 TPDLLPSDITGSSVFDPASATFEFRPGPVFAGLLLADEINRTAPKTQSALLEAMAERQVT 136 Query 134 IDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLE 193 +DG T +L PF V+AT NP+EYEGTYPLPEAQLDRF +RL + Y + E +L RRL Sbjct 137 VDGVTRRLPEPFHVVATSNPVEYEGTYPLPEAQLDRFMVRLAVGYPAHEAEVDVLARRLA 196 Query 194 RGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAEL 253 R TV QVVD L AM++ VE V+V +DVL Y V LA ATR H V VGASPR Sbjct 197 RRQEAATVRQVVDAATLRAMQQGVEAVSVDDDVLGYCVDLAAATRRHESVEVGASPRGSQ 256 Query 254 DLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLP 313 LV ++RA A+L GRD+V PEDVK + A +AHR++L P+ W +A +V E+LR +P Sbjct 257 ALVLVARAVAVLAGRDFVAPEDVKAVGVATLAHRLSLSPQAWAAGLAPQRIVDEVLRAVP 316 Query 314 VP 315 P Sbjct 317 GP 318 >gi|291299107|ref|YP_003510385.1| ATPase [Stackebrandtia nassauensis DSM 44728] gi|290568327|gb|ADD41292.1| ATPase associated with various cellular activities AAA_3 [Stackebrandtia nassauensis DSM 44728] Length=341 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 174/305 (58%), Positives = 226/305 (75%), Gaps = 0/305 (0%) Query 11 HCEAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTR 70 H VLD + V+VGKR L L+L +LA+GHVL ED PGLGKTL AR FA +LGL+F R Sbjct 16 HAADVLDAVNTVIVGKREPLELVLAGILAKGHVLFEDYPGLGKTLTARCFAQSLGLEFNR 75 Query 71 VQFTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEG 130 +QFTPDLLPAD+ GS +Y+ +SG F+FR GP+FTNLLLADEINRTPPKTQAALLEAM E Sbjct 76 LQFTPDLLPADVTGSFMYNQKSGDFDFRPGPVFTNLLLADEINRTPPKTQAALLEAMQEQ 135 Query 131 QVSIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRR 190 QVS++G T +L PF VLAT NPIEYEGTYPLPEAQLDRF R+ Y +E +E ++L+R Sbjct 136 QVSVEGSTRRLEPPFCVLATANPIEYEGTYPLPEAQLDRFLARVSFGYPNEDEEWTVLKR 195 Query 191 RLERGSADPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPR 250 R+ R + ++ VVD L+ M+ ++E V+V + + Y+V + ATR H + VGASPR Sbjct 196 RMARQQEESFLDPVVDASTLVRMQRALETVSVEDSIGQYIVRIVAATRDHDDIQVGASPR 255 Query 251 AELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLR 310 L L+ L RARA++ GRDYVIPEDVK +A AA++HR++LRPE+W+R + +++E+ Sbjct 256 GSLALLLLGRARAVMAGRDYVIPEDVKTVAPAALSHRVSLRPELWLRHASPERIIAEICE 315 Query 311 RLPVP 315 PVP Sbjct 316 STPVP 320 Lambda K H 0.321 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 561634707666 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40