BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3165c
Length=160
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610301|ref|NP_217681.1| hypothetical protein Rv3165c [Mycob... 317 3e-85
gi|289448846|ref|ZP_06438590.1| conserved hypothetical protein [... 316 6e-85
gi|296169173|ref|ZP_06850827.1| conserved hypothetical protein [... 249 1e-64
gi|41409317|ref|NP_962153.1| hypothetical protein MAP3219c [Myco... 245 2e-63
gi|254776474|ref|ZP_05217990.1| hypothetical protein MaviaA2_176... 245 2e-63
gi|118466660|ref|YP_883205.1| hypothetical protein MAV_4053 [Myc... 239 9e-62
gi|183981421|ref|YP_001849712.1| hypothetical protein MMAR_1398 ... 238 2e-61
gi|254819289|ref|ZP_05224290.1| hypothetical protein MintA_05148... 237 5e-61
gi|342861072|ref|ZP_08717721.1| hypothetical protein MCOL_19412 ... 229 8e-59
gi|240169649|ref|ZP_04748308.1| hypothetical protein MkanA1_1006... 221 2e-56
gi|120401207|ref|YP_951036.1| hypothetical protein Mvan_0179 [My... 180 7e-44
gi|126432756|ref|YP_001068447.1| hypothetical protein Mjls_0143 ... 169 1e-40
gi|333990620|ref|YP_004523234.1| hypothetical protein JDM601_198... 169 2e-40
gi|108797133|ref|YP_637330.1| hypothetical protein Mmcs_0153 [My... 162 2e-38
gi|145221081|ref|YP_001131759.1| hypothetical protein Mflv_0477 ... 157 4e-37
gi|118472541|ref|YP_888159.1| hypothetical protein MSMEG_3868 [M... 147 3e-34
gi|213861712|ref|ZP_03386182.1| hypothetical protein SentesT_296... 145 2e-33
gi|169628998|ref|YP_001702647.1| hypothetical protein MAB_1910c ... 126 9e-28
gi|226363851|ref|YP_002781633.1| hypothetical protein ROP_44410 ... 115 2e-24
gi|111021498|ref|YP_704470.1| hypothetical protein RHA1_ro04526 ... 114 4e-24
gi|54022422|ref|YP_116664.1| hypothetical protein nfa4580 [Nocar... 100 7e-20
gi|333918364|ref|YP_004491945.1| hypothetical protein AS9A_0691 ... 94.4 5e-18
gi|320583618|gb|EFW97831.1| putative GRAM domain protein [Pichia... 35.8 2.2
>gi|15610301|ref|NP_217681.1| hypothetical protein Rv3165c [Mycobacterium tuberculosis H37Rv]
gi|15842742|ref|NP_337779.1| hypothetical protein MT3254 [Mycobacterium tuberculosis CDC1551]
gi|31794342|ref|NP_856835.1| hypothetical protein Mb3190c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=160
Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD
Sbjct 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM
Sbjct 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV
Sbjct 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
>gi|289448846|ref|ZP_06438590.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421804|gb|EFD19005.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=160
Score = 316 bits (810), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 159/160 (99%), Positives = 160/160 (100%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MKRLIALGIFLI+GIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD
Sbjct 1 MKRLIALGIFLIMGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM
Sbjct 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV
Sbjct 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
>gi|296169173|ref|ZP_06850827.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896152|gb|EFG75818.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=160
Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/160 (79%), Positives = 136/160 (85%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MKR + LG+ LIVGIELLALI HDRR VL SG ALALVLL VRR+LG A PD D
Sbjct 1 MKRTLVLGVCLIVGIELLALIQHDRRFVLVASGGALALVLLTVRRVLGRGRYPDAEPDPD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
D+G+ LRRWLSNTETTIRWSESTR DWDRHLRPMLARR+E+ATG RQ+KD VA+ A+GRM
Sbjct 61 DVGDSLRRWLSNTETTIRWSESTRRDWDRHLRPMLARRYEMATGQRQSKDRVAYHASGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG ELWEWVNPNNVT TGDRQPGPGRAALEEIL+KLEQV
Sbjct 121 LFGAELWEWVNPNNVTRTGDRQPGPGRAALEEILRKLEQV 160
>gi|41409317|ref|NP_962153.1| hypothetical protein MAP3219c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398137|gb|AAS05767.1| hypothetical protein MAP_3219c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=160
Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/160 (76%), Positives = 136/160 (85%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MK+ +ALG+ LI+GIELLAL HDRRLVL SG+ LALVLL++RR LG E + D+D
Sbjct 1 MKKTVALGLCLIIGIELLALTQHDRRLVLTASGVGLALVLLSLRRALGRGAERESKHDAD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
DLG+ LRRWL+ TETTIRWSESTRADWDRHLRPMLARR+ IATG RQAKDP +F ATG+M
Sbjct 61 DLGDSLRRWLAATETTIRWSESTRADWDRHLRPMLARRYAIATGQRQAKDPASFQATGQM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG ELWEWVNPNNVT TG RQPGPGRAALEEIL+KLEQV
Sbjct 121 LFGAELWEWVNPNNVTRTGGRQPGPGRAALEEILRKLEQV 160
>gi|254776474|ref|ZP_05217990.1| hypothetical protein MaviaA2_17644 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|336459326|gb|EGO38269.1| hypothetical protein MAPs_04250 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=160
Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/160 (76%), Positives = 136/160 (85%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MK+ +ALG+ LI+GIELLAL HDRRLVL SG+ LALVLL++RR LG E + D+D
Sbjct 1 MKKTVALGLCLIIGIELLALTQHDRRLVLTASGVGLALVLLSLRRALGRGAERESEHDAD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
DLG+ LRRWL+ TETTIRWSESTRADWDRHLRPMLARR+ IATG RQAKDP +F ATG+M
Sbjct 61 DLGDSLRRWLAATETTIRWSESTRADWDRHLRPMLARRYAIATGQRQAKDPASFQATGQM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG ELWEWVNPNNVT TG RQPGPGRAALEEIL+KLEQV
Sbjct 121 LFGAELWEWVNPNNVTRTGGRQPGPGRAALEEILRKLEQV 160
>gi|118466660|ref|YP_883205.1| hypothetical protein MAV_4053 [Mycobacterium avium 104]
gi|118167947|gb|ABK68844.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=156
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 119/156 (77%), Positives = 133/156 (86%), Gaps = 0/156 (0%)
Query 5 IALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSDDLGE 64
+ALG+ LI+GIELLAL HDRRLVL SG+ LALVLL++RR LG E + D+DDLG+
Sbjct 1 MALGLCLIIGIELLALTQHDRRLVLTASGVGLALVLLSLRRALGRGAERESEHDADDLGD 60
Query 65 GLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRMLFGD 124
LRRWL+ TETTIRWSESTRADWDRHLRPMLARR+ IATG RQAKDP +F ATG+MLFG
Sbjct 61 SLRRWLAATETTIRWSESTRADWDRHLRPMLARRYAIATGQRQAKDPASFQATGQMLFGA 120
Query 125 ELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
ELWEWVNPNNVT TG RQPGPGRAALEEIL+KLEQV
Sbjct 121 ELWEWVNPNNVTRTGGRQPGPGRAALEEILRKLEQV 156
>gi|183981421|ref|YP_001849712.1| hypothetical protein MMAR_1398 [Mycobacterium marinum M]
gi|183174747|gb|ACC39857.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=160
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/160 (74%), Positives = 134/160 (84%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MK+LI LG+ LIV +ELL L + D RLVLA SG+A+ALVLLN+RR++G+ A D D
Sbjct 1 MKKLIVLGVLLIVAVELLTLAVRDHRLVLAASGVAVALVLLNIRRVVGHAMAPPAETDPD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
D+G+GLRRWLS TETTIR SESTRADWDRHLRPMLARR+EIATG RQAKDP AF ATGRM
Sbjct 61 DVGDGLRRWLSGTETTIRRSESTRADWDRHLRPMLARRYEIATGQRQAKDPAAFHATGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG++LWEWVNPNNV TGDRQ GPGRA LE ILQ+LEQV
Sbjct 121 LFGEDLWEWVNPNNVARTGDRQAGPGRATLEAILQRLEQV 160
>gi|254819289|ref|ZP_05224290.1| hypothetical protein MintA_05148 [Mycobacterium intracellulare
ATCC 13950]
Length=160
Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/160 (74%), Positives = 131/160 (82%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MK+ LG+ LI+ IELL L HDRRLVLA SG+ LA+VLL +RR LG E P++D
Sbjct 1 MKKTATLGVCLIIAIELLTLTQHDRRLVLAASGIGLAVVLLGLRRTLGRGPEAGTEPEAD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
D+G+ LRRWLS TETTIR SE+TRADWDRHLRPMLARR+EIATG RQAKDP AF ATGRM
Sbjct 61 DIGDSLRRWLSTTETTIRRSEATRADWDRHLRPMLARRYEIATGQRQAKDPAAFHATGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG ELW+WVNPNNV GDRQPGPGRAALEEIL+KLEQV
Sbjct 121 LFGVELWDWVNPNNVIRNGDRQPGPGRAALEEILRKLEQV 160
>gi|342861072|ref|ZP_08717721.1| hypothetical protein MCOL_19412 [Mycobacterium colombiense CECT
3035]
gi|342131516|gb|EGT84786.1| hypothetical protein MCOL_19412 [Mycobacterium colombiense CECT
3035]
Length=160
Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/160 (72%), Positives = 131/160 (82%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
M + I+LG+ LIVGIELLAL HDRR VLA +G+ LA+VLL +RR L + A +D
Sbjct 1 MNKTISLGVCLIVGIELLALSQHDRRWVLAAAGIGLAVVLLGLRRALARGFDAGAEAGAD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
+LG+ LRRWLS TETTIRWSE+TRADWDRHLRPMLARR+EI TG RQ+KDP AF ATGRM
Sbjct 61 ELGDSLRRWLSTTETTIRWSEATRADWDRHLRPMLARRYEITTGQRQSKDPAAFHATGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG ELWEWVNPNNV +GDR+PGPGRAALEEIL +LEQV
Sbjct 121 LFGAELWEWVNPNNVRRSGDREPGPGRAALEEILLRLEQV 160
>gi|240169649|ref|ZP_04748308.1| hypothetical protein MkanA1_10067 [Mycobacterium kansasii ATCC
12478]
Length=160
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/160 (74%), Positives = 132/160 (83%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
MK+L+ LG+ L+VG+ELL L++ DRR VLA SG+A+ LVLLNVRR+LG A PD D
Sbjct 1 MKKLVVLGVCLVVGVELLGLVVQDRRFVLAASGVAVGLVLLNVRRVLGRGSSPAAEPDHD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
DLG+GLRRWLSNTETTIRWSESTRADWDRHLRPMLARR+EIATG R AKDP AF ATG+M
Sbjct 61 DLGDGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRYEIATGQRLAKDPAAFHATGQM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
LFG ELWEWVNPNNV +G QPGPGR ALE IL+K E V
Sbjct 121 LFGAELWEWVNPNNVVRSGAHQPGPGREALEAILEKFELV 160
>gi|120401207|ref|YP_951036.1| hypothetical protein Mvan_0179 [Mycobacterium vanbaalenii PYR-1]
gi|119954025|gb|ABM11030.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=160
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/160 (54%), Positives = 119/160 (75%), Gaps = 0/160 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSD 60
M +++ +G FLIV +++LA+ DR +VL +G ALA VL+ VR L +++ P +D
Sbjct 1 MTKVVVVGAFLIVVVQMLAVTQLDRDIVLTVTGGALACVLIAVRTHLTHQEGDVDDPVTD 60
Query 61 DLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRM 120
+ +RRWLS TET I WSES+R+DWDR LRPMLAR+FE+A G R+ KDP AF ATGRM
Sbjct 61 EAAASMRRWLSRTETLISWSESSRSDWDRRLRPMLARQFELAAGRRKIKDPRAFDATGRM 120
Query 121 LFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
+FGDELW+WV+P N++ TG ++ GPGR L+EILQ+LE++
Sbjct 121 VFGDELWQWVDPENISRTGGQEQGPGRRTLDEILQRLEKL 160
>gi|126432756|ref|YP_001068447.1| hypothetical protein Mjls_0143 [Mycobacterium sp. JLS]
gi|126232556|gb|ABN95956.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=161
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/161 (54%), Positives = 114/161 (71%), Gaps = 1/161 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRML-GNRDELTAAPDS 59
M R +A + ++V +E+ A++ DR VL S +ALA L+ R L G + A D+
Sbjct 1 MTRAVAAAMLMLVAVEIYAVVRLDRDDVLTVSAVALAGALIAARFALRGEAAPASTATDA 60
Query 60 DDLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGR 119
D+ G LRRW+ TET I WSE++RADWDR LRPMLAR+FE+ATG R+A+D AF ATG+
Sbjct 61 DERGAALRRWVDRTETMIGWSEASRADWDRRLRPMLARQFELATGQRKARDARAFHATGQ 120
Query 120 MLFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
MLFG ELW+WV+P NV+ TG +PGPGR AL EIL++LE+V
Sbjct 121 MLFGPELWQWVDPENVSRTGADEPGPGREALGEILRRLERV 161
>gi|333990620|ref|YP_004523234.1| hypothetical protein JDM601_1980 [Mycobacterium sp. JDM601]
gi|333486588|gb|AEF35980.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=160
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/161 (56%), Positives = 114/161 (71%), Gaps = 4/161 (2%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRML--GNRDELTAAPD 58
MK + G+ L++ ++L L H R+L+L +G+A+A+ LL +R++L G R A P
Sbjct 1 MKTVALQGVLLVLAVQLAVLFTHQRQLLLWAAGIAVAVPLLGIRQLLRTGGRGP-AAEPA 59
Query 59 SDDLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATG 118
D+ GE LRRWLS TE IRW+ESTRADWDR RP+LARRFE++TG R+AK+ AF ATG
Sbjct 60 LDEPGESLRRWLSGTEARIRWAESTRADWDRRWRPILARRFEVSTGQRRAKNE-AFNATG 118
Query 119 RMLFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQ 159
MLFG ELW WV+P NV + DR GPGRA LEEIL +LEQ
Sbjct 119 AMLFGAELWPWVDPGNVAPSADRGAGPGRAVLEEILYRLEQ 159
>gi|108797133|ref|YP_637330.1| hypothetical protein Mmcs_0153 [Mycobacterium sp. MCS]
gi|119866218|ref|YP_936170.1| hypothetical protein Mkms_0162 [Mycobacterium sp. KMS]
gi|108767552|gb|ABG06274.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692307|gb|ABL89380.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=161
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/161 (52%), Positives = 112/161 (70%), Gaps = 1/161 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRML-GNRDELTAAPDS 59
M R +A + ++V +E+ A++ DR VL S + LA L+ R L G + A D+
Sbjct 1 MTRAVAAAMLMLVAVEIYAVVRLDRDDVLTVSAVMLAGALIAARFALRGEVAPASTATDA 60
Query 60 DDLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGR 119
D+ G LRRW+ TET I WSE++RADWD LRP+LAR+FE+ATG R+A+D AF ATG+
Sbjct 61 DERGAALRRWVDRTETMIGWSEASRADWDGRLRPLLARQFELATGQRKARDARAFHATGQ 120
Query 120 MLFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
MLFG ELW+WV+P NV+ TG +PGPGR AL EIL++LE+V
Sbjct 121 MLFGPELWQWVDPENVSRTGADEPGPGREALGEILRRLERV 161
>gi|145221081|ref|YP_001131759.1| hypothetical protein Mflv_0477 [Mycobacterium gilvum PYR-GCK]
gi|145213567|gb|ABP42971.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=160
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/148 (53%), Positives = 108/148 (73%), Gaps = 0/148 (0%)
Query 13 VGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSDDLGEGLRRWLSN 72
+ ++ AL +R +V+A +G ALA VL+ VR L + +DD +RRWLS
Sbjct 13 IAVQAFALTQLEREVVVAVTGGALACVLIAVRARLDHDAVPDDDARADDAAAAIRRWLSR 72
Query 73 TETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNP 132
TET I WSES+R+DWDR LRPMLAR+FE+A G R+AKDP AF ATGRM+FGDELW+WV+P
Sbjct 73 TETLISWSESSRSDWDRRLRPMLARQFELAAGRRKAKDPRAFEATGRMVFGDELWQWVDP 132
Query 133 NNVTHTGDRQPGPGRAALEEILQKLEQV 160
+N++ +G +PGPGR L++IL++LE++
Sbjct 133 DNISRSGSLEPGPGRRTLDDILRRLERL 160
>gi|118472541|ref|YP_888159.1| hypothetical protein MSMEG_3868 [Mycobacterium smegmatis str.
MC2 155]
gi|118173828|gb|ABK74724.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=161
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/161 (51%), Positives = 103/161 (64%), Gaps = 1/161 (0%)
Query 1 MKRLIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTA-APDS 59
MKR + G L+V +EL AL + R ++ +G ALA++L++VR L A + S
Sbjct 1 MKRFVVAGFALVVFVELAALAVPGRSMIGWATGAALAVLLVSVRLALREDPVHDARSTAS 60
Query 60 DDLGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGR 119
+D E L RW S TE I ++STR+ WDRHLRP LAR F A+G R D AF ATGR
Sbjct 61 EDAAELLARWQSETEILISRADSTRSQWDRHLRPRLAREFAAASGQRLVGDQSAFQATGR 120
Query 120 MLFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
MLFG+ LW+WV+PNNV D PGPGRA L EILQ+LEQ+
Sbjct 121 MLFGERLWQWVDPNNVASARDDGPGPGRAVLAEILQRLEQL 161
>gi|213861712|ref|ZP_03386182.1| hypothetical protein SentesT_29615 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length=70
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/70 (98%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 91 LRPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNPNNVTHTGDRQPGPGRAAL 150
+RPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNPNNVT+TGDRQPGPGRAAL
Sbjct 1 MRPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNPNNVTYTGDRQPGPGRAAL 60
Query 151 EEILQKLEQV 160
EEILQKLEQV
Sbjct 61 EEILQKLEQV 70
>gi|169628998|ref|YP_001702647.1| hypothetical protein MAB_1910c [Mycobacterium abscessus ATCC
19977]
gi|169240965|emb|CAM61993.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=161
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/128 (50%), Positives = 83/128 (65%), Gaps = 3/128 (2%)
Query 33 GLALALVLLNVRRMLGNRDELTAAPDSDDLGEGLRRWLSNTETTIRWSESTRADWDRHLR 92
G AL L+ N+R R ++ ++P S E LRRW + E I W+E TR DWDR LR
Sbjct 37 GTALGLLWGNLR---SARADMPSSPASLPADETLRRWHARAEARISWAERTRGDWDRQLR 93
Query 93 PMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNPNNVTHTGDRQPGPGRAALEE 152
P++A FE A GHRQ+++P A AATGRM FG ELW WV+PN + T P PGRA L+
Sbjct 94 PLIAADFETAAGHRQSRNPAALAATGRMTFGPELWRWVDPNGASDTDRAAPAPGRAVLQS 153
Query 153 ILQKLEQV 160
IL++LE++
Sbjct 154 ILERLERM 161
>gi|226363851|ref|YP_002781633.1| hypothetical protein ROP_44410 [Rhodococcus opacus B4]
gi|226242340|dbj|BAH52688.1| hypothetical protein [Rhodococcus opacus B4]
Length=160
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/159 (42%), Positives = 97/159 (62%), Gaps = 6/159 (3%)
Query 4 LIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLG--NRDELTAAPDSDD 61
+I +G L V + L+A + +++AG+ ALVL +RR + + D T+ P+++
Sbjct 6 VIGVGAVLAVEVPLVAAGRYAAAVLIAGA--VTALVLFEIRRRMAPADADAETSGPEAER 63
Query 62 LGEGLRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRML 121
RW++ TE+ I W++ TR DWD HLRP+LAR F+ +TG RQ DP AA G +
Sbjct 64 AEA-AARWMARTESLISWADGTRGDWDHHLRPLLAREFQQSTGQRQGLDPADTAAAGEVF 122
Query 122 FGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
FGD LW WV+P+ V +PGPGR L+ ILQ+LEQ+
Sbjct 123 FGD-LWRWVDPDGVRRFDRTEPGPGRDVLDRILQRLEQL 160
>gi|111021498|ref|YP_704470.1| hypothetical protein RHA1_ro04526 [Rhodococcus jostii RHA1]
gi|110821028|gb|ABG96312.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=160
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/130 (45%), Positives = 79/130 (61%), Gaps = 2/130 (1%)
Query 32 SGLALALVLLNVRRMLGNRDELTAAPDSD-DLGEGLRRWLSNTETTIRWSESTRADWDRH 90
+G ALVL +RR + + P + + E RW++ TE+ I W++ TR DWD H
Sbjct 32 AGAVTALVLFEIRRRMAPGEVDDQPPGLEAERAEATARWMARTESLISWADGTRGDWDHH 91
Query 91 LRPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNPNNVTHTGDRQPGPGRAAL 150
LRP+LAR F+ +TG RQ DP AA G + FGD LW+WV+P V + PGPGR L
Sbjct 92 LRPLLAREFQQSTGQRQGLDPADTAAAGEVFFGD-LWQWVDPECVQRSDRAAPGPGRDVL 150
Query 151 EEILQKLEQV 160
+ ILQ+LEQ+
Sbjct 151 DRILQRLEQL 160
>gi|54022422|ref|YP_116664.1| hypothetical protein nfa4580 [Nocardia farcinica IFM 10152]
gi|54013930|dbj|BAD55300.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=165
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/161 (41%), Positives = 91/161 (57%), Gaps = 7/161 (4%)
Query 4 LIALGIFLIVGIELLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSDDLG 63
+ A+G L++ + A L + L LA +A+ALVLL L R A +D++
Sbjct 8 VTAIGAVLLLEA-IAAARLREALLPLAAVPVAIALVLLLAS--LRERTARAADDRADEID 64
Query 64 EG----LRRWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGR 119
G LRRW + + ++ TRADWDRHLRP+LA+ FE++ G R AK+ A A G
Sbjct 65 NGPVEMLRRWEARAQMLADRADGTRADWDRHLRPLLAKEFELSAGMRVAKNRRAMEAAGL 124
Query 120 MLFGDELWEWVNPNNVTHTGDRQPGPGRAALEEILQKLEQV 160
FG ELW WV+P N P PGRAAL+EIL +L+++
Sbjct 125 HQFGPELWRWVDPANSELRDQTTPAPGRAALDEILHRLQRM 165
>gi|333918364|ref|YP_004491945.1| hypothetical protein AS9A_0691 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480585|gb|AEF39145.1| hypothetical protein AS9A_0691 [Amycolicicoccus subflavus DQS3-9A1]
Length=151
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/152 (38%), Positives = 80/152 (53%), Gaps = 11/152 (7%)
Query 17 LLALILHDRRLVLAGSGLALALVLLNVRRMLGNRDELTAAPDSDD---------LGEGLR 67
+L L L + L+ +G A+A+VL + M R + A D++D E L
Sbjct 1 MLLLALGEYALLATVTGFAVAVVLALL--MYRTRRSIEAPTDTEDPRGVRAEQSQQELLD 58
Query 68 RWLSNTETTIRWSESTRADWDRHLRPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELW 127
RW S E TI W++ +R DWD HLRP+LAR FE T R + + A G +LFG LW
Sbjct 59 RWRSRAEFTISWADGSRGDWDLHLRPVLAREFEQVTKVRARGNRAQYQAAGELLFGPVLW 118
Query 128 EWVNPNNVTHTGDRQPGPGRAALEEILQKLEQ 159
+WV+ + + PGPGR L +IL +LE
Sbjct 119 KWVDASQTSRAHRDDPGPGRTVLADILARLEH 150
>gi|320583618|gb|EFW97831.1| putative GRAM domain protein [Pichia angusta DL-1]
Length=839
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 18/73 (25%), Positives = 33/73 (46%), Gaps = 12/73 (16%)
Query 87 WDRHLRPMLARRFEIATGHRQAKDPVAFAATGRMLFGDELWEWVNPNNVTHTGDRQPGPG 146
WD+ RP + RR HR D + + +LW W++ + D+ P G
Sbjct 769 WDKFTRPDVERR------HRALDDQIFMTSEA------DLWNWIDQRQNGFSADQYPEIG 816
Query 147 RAALEEILQKLEQ 159
L+E+++ +E+
Sbjct 817 AQQLKEVIRVVEK 829
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127750398496
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40